https://launchpad.net/ubuntu/+archive/test-rebuild-20200925-groovy/+build/20036112 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-018 4.15.0-118-generic #119-Ubuntu SMP Tue Sep 8 12:21:56 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 30 Sep 18:34:26 ntpdate[1651]: adjust time server 10.211.37.1 offset 0.007380 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-20036112 --image-type chroot /home/buildd/filecache-default/6f3c84eb9e6a781060c5439a51cfc1d7c8c4fc5d Creating target for build PACKAGEBUILD-20036112 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-20036112 Starting target for build PACKAGEBUILD-20036112 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-20036112 'deb http://ftpmaster.internal/ubuntu groovy main universe' Overriding sources.list in build-PACKAGEBUILD-20036112 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-20036112 Updating target for build PACKAGEBUILD-20036112 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main armhf Packages [1331 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main Translation-en [507 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/universe armhf Packages [12.1 MB] Get:5 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5260 kB] Fetched 19.5 MB in 6s (3067 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi7 libjson-c4 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libffi8ubuntu1 libgssapi-krb5-2 libjson-c5 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnsl-dev libnsl2 libnss-nis libnss-nisplus libtirpc-common libtirpc-dev libtirpc3 rpcsvc-proto The following packages will be upgraded: apt base-files binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential ca-certificates coreutils cpp cpp-10 debianutils dpkg dpkg-dev g++ g++-10 gcc gcc-10 gcc-10-base libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libgcc-10-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libip4tc2 liblzma5 libmount1 libmpc3 libmpfr6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpng16-16 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev mount openssl sensible-utils systemd systemd-sysv systemd-timesyncd util-linux xz-utils zlib1g 79 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 56.2 MB of archives. After this operation, 2078 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main armhf libkrb5support0 armhf 1.17-10 [27.9 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main armhf libk5crypto3 armhf 1.17-10 [79.5 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main armhf libkeyutils1 armhf 1.6.1-2ubuntu1 [9028 B] Get:4 http://ftpmaster.internal/ubuntu groovy/main armhf libssl1.1 armhf 1.1.1f-1ubuntu4 [1078 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf libkrb5-3 armhf 1.17-10 [287 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main armhf libgssapi-krb5-2 armhf 1.17-10 [101 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main armhf libtirpc-common all 1.2.6-1build1 [7472 B] Get:8 http://ftpmaster.internal/ubuntu groovy/main armhf libtirpc3 armhf 1.2.6-1build1 [65.9 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main armhf libnsl2 armhf 1.3.0-0ubuntu3 [33.4 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main armhf libnss-nis armhf 3.1-0ubuntu4 [21.7 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main armhf libnss-nisplus armhf 1.3-0ubuntu4 [18.5 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main armhf libc6 armhf 2.32-0ubuntu3 [2120 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main armhf libc-dev-bin armhf 2.32-0ubuntu3 [29.6 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main armhf libc6-dev armhf 2.32-0ubuntu3 [1581 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu3 [58.5 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main armhf libtirpc-dev armhf 1.2.6-1build1 [175 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main armhf libnsl-dev armhf 1.3.0-0ubuntu3 [61.2 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main armhf libc-bin armhf 2.32-0ubuntu3 [492 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main armhf linux-libc-dev armhf 5.8.0-20.21 [1125 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main armhf libcc1-0 armhf 10.2.0-11ubuntu1 [34.6 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main armhf libctf0 armhf 2.35.1-1ubuntu1 [37.6 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main armhf libctf-nobfd0 armhf 2.35.1-1ubuntu1 [38.4 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main armhf binutils-arm-linux-gnueabihf armhf 2.35.1-1ubuntu1 [2054 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main armhf libbinutils armhf 2.35.1-1ubuntu1 [322 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main armhf binutils-common armhf 2.35.1-1ubuntu1 [212 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main armhf binutils armhf 2.35.1-1ubuntu1 [3372 B] Get:27 http://ftpmaster.internal/ubuntu groovy/main armhf gcc-10-base armhf 10.2.0-11ubuntu1 [19.5 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main armhf libgcc-s1 armhf 10.2.0-11ubuntu1 [36.2 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main armhf libgomp1 armhf 10.2.0-11ubuntu1 [87.2 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main armhf libatomic1 armhf 10.2.0-11ubuntu1 [7212 B] Get:31 http://ftpmaster.internal/ubuntu groovy/main armhf libasan6 armhf 10.2.0-11ubuntu1 [328 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main armhf libubsan1 armhf 10.2.0-11ubuntu1 [122 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main armhf g++-10 armhf 10.2.0-11ubuntu1 [7259 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main armhf libstdc++-10-dev armhf 10.2.0-11ubuntu1 [1810 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main armhf libgcc-10-dev armhf 10.2.0-11ubuntu1 [717 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main armhf gcc-10 armhf 10.2.0-11ubuntu1 [12.9 MB] Get:37 http://ftpmaster.internal/ubuntu groovy/main armhf cpp-10 armhf 10.2.0-11ubuntu1 [6376 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main armhf libstdc++6 armhf 10.2.0-11ubuntu1 [440 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main armhf zlib1g armhf 1:1.2.11.dfsg-2ubuntu2 [47.8 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main armhf libgmp10 armhf 2:6.2.0+dfsg-6ubuntu1 [188 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main armhf libmpfr6 armhf 4.1.0-3 [199 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main armhf libmpc3 armhf 1.2.0~rc1-1 [36.1 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main armhf libzstd1 armhf 1.4.5+dfsg-4 [254 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main armhf base-files armhf 11ubuntu13 [60.1 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main armhf bsdutils armhf 1:2.36-3ubuntu1 [78.7 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main armhf libselinux1 armhf 3.1-2 [60.4 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main armhf coreutils armhf 8.32-3ubuntu1 [1207 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main armhf debianutils armhf 4.11.1 [84.4 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main armhf dpkg armhf 1.20.5ubuntu2 [1129 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main armhf util-linux armhf 2.36-3ubuntu1 [1001 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main armhf liblzma5 armhf 5.2.4-1ubuntu1 [83.6 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main armhf libffi8ubuntu1 armhf 3.4~20200819gead65ca871-0ubuntu3 [16.4 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main armhf libp11-kit0 armhf 0.23.21-2build1 [170 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main armhf libgnutls30 armhf 3.6.15-4ubuntu2 [713 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main armhf systemd-sysv armhf 246.6-1ubuntu1 [10.3 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main armhf systemd-timesyncd armhf 246.6-1ubuntu1 [27.8 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main armhf libapparmor1 armhf 3.0.0~beta1-0ubuntu6 [31.3 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main armhf libaudit-common all 1:2.8.5-3ubuntu1 [4076 B] Get:59 http://ftpmaster.internal/ubuntu groovy/main armhf libaudit1 armhf 1:2.8.5-3ubuntu1 [36.0 kB] Get:60 http://ftpmaster.internal/ubuntu groovy/main armhf libcap2 armhf 1:2.43-1 [15.2 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main armhf libjson-c5 armhf 0.15-1 [27.2 kB] Get:62 http://ftpmaster.internal/ubuntu groovy/main armhf libblkid1 armhf 2.36-3ubuntu1 [119 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main armhf libuuid1 armhf 2.36-3ubuntu1 [20.5 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main armhf libcryptsetup12 armhf 2:2.3.3-1ubuntu6 [173 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main armhf libip4tc2 armhf 1.8.5-3ubuntu1 [17.1 kB] Get:66 http://ftpmaster.internal/ubuntu groovy/main armhf libmount1 armhf 2.36-3ubuntu1 [133 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main armhf libpam0g armhf 1.3.1-5ubuntu6 [50.3 kB] Get:68 http://ftpmaster.internal/ubuntu groovy/main armhf mount armhf 2.36-3ubuntu1 [113 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main armhf systemd armhf 246.6-1ubuntu1 [3973 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main armhf libsystemd0 armhf 246.6-1ubuntu1 [248 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main armhf libudev1 armhf 246.6-1ubuntu1 [60.2 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main armhf libapt-pkg6.0 armhf 2.1.10 [774 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/main armhf apt armhf 2.1.10 [1254 kB] Get:74 http://ftpmaster.internal/ubuntu groovy/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu6 [33.5 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/main armhf libpam-modules armhf 1.3.1-5ubuntu6 [232 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.6ubuntu3 [596 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/main armhf libpam-runtime all 1.3.1-5ubuntu6 [37.3 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main armhf libsemanage-common all 3.1-1 [10.2 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main armhf libsemanage1 armhf 3.1-1 [75.0 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main armhf libsmartcols1 armhf 2.36-3ubuntu1 [84.4 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/main armhf sensible-utils all 0.0.13 [15.1 kB] Get:82 http://ftpmaster.internal/ubuntu groovy/main armhf openssl armhf 1.1.1f-1ubuntu4 [597 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main armhf ca-certificates all 20200601 [147 kB] Get:84 http://ftpmaster.internal/ubuntu groovy/main armhf libsqlite3-0 armhf 3.33.0-1 [501 kB] Get:85 http://ftpmaster.internal/ubuntu groovy/main armhf xz-utils armhf 5.2.4-1ubuntu1 [80.9 kB] Get:86 http://ftpmaster.internal/ubuntu groovy/main armhf libgdbm6 armhf 1.18.1-5.1 [24.5 kB] Get:87 http://ftpmaster.internal/ubuntu groovy/main armhf libpng16-16 armhf 1.6.37-3 [163 kB] Get:88 http://ftpmaster.internal/ubuntu groovy/main armhf g++ armhf 4:10.2.0-1ubuntu1 [1616 B] Get:89 http://ftpmaster.internal/ubuntu groovy/main armhf gcc armhf 4:10.2.0-1ubuntu1 [5224 B] Get:90 http://ftpmaster.internal/ubuntu groovy/main armhf cpp armhf 4:10.2.0-1ubuntu1 [27.7 kB] Get:91 http://ftpmaster.internal/ubuntu groovy/main armhf dpkg-dev all 1.20.5ubuntu2 [758 kB] Get:92 http://ftpmaster.internal/ubuntu groovy/main armhf libdpkg-perl all 1.20.5ubuntu2 [232 kB] Get:93 http://ftpmaster.internal/ubuntu groovy/main armhf build-essential armhf 12.8ubuntu3 [4636 B] Get:94 http://ftpmaster.internal/ubuntu groovy/main armhf libgdbm-compat4 armhf 1.18.1-5.1 [5892 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 56.2 MB in 3s (19.7 MB/s) Selecting previously unselected package libkrb5support0:armhf. (Reading database ... 12533 files and directories currently installed.) Preparing to unpack .../libkrb5support0_1.17-10_armhf.deb ... Unpacking libkrb5support0:armhf (1.17-10) ... Setting up libkrb5support0:armhf (1.17-10) ... Selecting previously unselected package libk5crypto3:armhf. (Reading database ... 12538 files and directories currently installed.) Preparing to unpack .../libk5crypto3_1.17-10_armhf.deb ... Unpacking libk5crypto3:armhf (1.17-10) ... Setting up libk5crypto3:armhf (1.17-10) ... Selecting previously unselected package libkeyutils1:armhf. (Reading database ... 12543 files and directories currently installed.) Preparing to unpack .../libkeyutils1_1.6.1-2ubuntu1_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.1-2ubuntu1) ... Setting up libkeyutils1:armhf (1.6.1-2ubuntu1) ... (Reading database ... 12548 files and directories currently installed.) Preparing to unpack .../libssl1.1_1.1.1f-1ubuntu4_armhf.deb ... 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Setting up binutils-arm-linux-gnueabihf (2.35.1-1ubuntu1) ... Setting up libstdc++-10-dev:armhf (10.2.0-11ubuntu1) ... Setting up binutils (2.35.1-1ubuntu1) ... Setting up dpkg-dev (1.20.5ubuntu2) ... Setting up gcc-10 (10.2.0-11ubuntu1) ... Setting up g++-10 (10.2.0-11ubuntu1) ... Setting up gcc (4:10.2.0-1ubuntu1) ... Setting up g++ (4:10.2.0-1ubuntu1) ... Setting up build-essential (12.8ubuntu3) ... Setting up systemd (246.6-1ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Removing obsolete conffile /etc/dhcp/dhclient-enter-hooks.d/resolved ... Setting up systemd-timesyncd (246.6-1ubuntu1) ... Setting up systemd-sysv (246.6-1ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... Processing triggers for ca-certificates (20200601) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20036112 armhf groovy -c chroot:build-PACKAGEBUILD-20036112 --arch=armhf --dist=groovy --nolog openstructure_2.0.0-3.dsc Initiating build PACKAGEBUILD-20036112 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-118-generic #119-Ubuntu SMP Tue Sep 8 12:21:56 UTC 2020 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-018.buildd +==============================================================================+ | openstructure 2.0.0-3 (armhf) Wed, 30 Sep 2020 18:35:26 +0000 | +==============================================================================+ Package: openstructure Version: 2.0.0-3 Source Version: 2.0.0-3 Distribution: groovy Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20036112/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- openstructure_2.0.0-3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/openstructure-iwaimR/openstructure-2.0.0' with '<>' I: NOTICE: Log filtering will replace 'build/openstructure-iwaimR' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Lrf6Fa/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-Lrf6Fa/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Lrf6Fa/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-Lrf6Fa/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Lrf6Fa/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-Lrf6Fa/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (47.5 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi7 libjson-c4 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Lrf6Fa/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (66.8 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12780 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: clustalw, cmake, debhelper-compat (= 12), dh-python, dssp, libboost-all-dev, libeigen3-dev, libfftw3-dev, libglu1-mesa-dev, libpng-dev, libqt5opengl5-dev, libsqlite3-dev, libtiff-dev, python3-dev, python3-matplotlib, python3-numpy, python3-pil, python3-pyqt5, python3-scipy, qtbase5-dev, sip-dev, voronota Filtered Build-Depends: clustalw, cmake, debhelper-compat (= 12), dh-python, dssp, libboost-all-dev, libeigen3-dev, libfftw3-dev, libglu1-mesa-dev, libpng-dev, libqt5opengl5-dev, libsqlite3-dev, libtiff-dev, python3-dev, python3-matplotlib, python3-numpy, python3-pil, python3-pyqt5, python3-scipy, qtbase5-dev, sip-dev, voronota dpkg-deb: building package 'sbuild-build-depends-openstructure-dummy' in '/<>/resolver-Lrf6Fa/apt_archive/sbuild-build-depends-openstructure-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-openstructure-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-Lrf6Fa/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Lrf6Fa/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Lrf6Fa/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Lrf6Fa/apt_archive ./ Sources [643 B] Get:5 copy:/<>/resolver-Lrf6Fa/apt_archive ./ Packages [703 B] Fetched 2309 B in 0s (62.3 kB/s) Reading package lists... Reading package lists... Install openstructure build dependencies (apt-based resolver) ------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi7 libjson-c4 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils clustalw cmake cmake-data cpp-9 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dssp dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gcc-9 gcc-9-base gettext gettext-base gfortran-9 groff-base ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl libarchive13 libasan5 libasn1-8-heimdal libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-all-dev libboost-atomic-dev libboost-atomic1.71-dev libboost-atomic1.71.0 libboost-chrono-dev libboost-chrono1.71-dev libboost-chrono1.71.0 libboost-container-dev libboost-container1.71-dev libboost-container1.71.0 libboost-context-dev libboost-context1.71-dev libboost-context1.71.0 libboost-coroutine-dev libboost-coroutine1.71-dev libboost-coroutine1.71.0 libboost-date-time-dev libboost-date-time1.71-dev libboost-date-time1.71.0 libboost-dev libboost-exception-dev libboost-exception1.71-dev libboost-fiber-dev libboost-fiber1.71-dev libboost-fiber1.71.0 libboost-filesystem-dev libboost-filesystem1.71-dev libboost-filesystem1.71.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.71-dev libboost-graph-parallel1.71.0 libboost-graph1.71-dev libboost-graph1.71.0 libboost-iostreams-dev libboost-iostreams1.71-dev libboost-iostreams1.71.0 libboost-locale-dev libboost-locale1.71-dev libboost-locale1.71.0 libboost-log-dev libboost-log1.71-dev libboost-log1.71.0 libboost-math-dev libboost-math1.71-dev libboost-math1.71.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.71-dev libboost-mpi-python1.71.0 libboost-mpi1.71-dev libboost-mpi1.71.0 libboost-numpy-dev libboost-numpy1.71-dev libboost-numpy1.71.0 libboost-program-options-dev libboost-program-options1.71-dev libboost-program-options1.71.0 libboost-python-dev libboost-python1.71-dev libboost-python1.71.0 libboost-random-dev libboost-random1.71-dev libboost-random1.71.0 libboost-regex-dev libboost-regex1.71-dev libboost-regex1.71.0 libboost-serialization-dev libboost-serialization1.71-dev libboost-serialization1.71.0 libboost-stacktrace-dev libboost-stacktrace1.71-dev libboost-stacktrace1.71.0 libboost-system-dev libboost-system1.71-dev libboost-system1.71.0 libboost-test-dev libboost-test1.71-dev libboost-test1.71.0 libboost-thread-dev libboost-thread1.71-dev libboost-thread1.71.0 libboost-timer-dev libboost-timer1.71-dev libboost-timer1.71.0 libboost-tools-dev libboost-type-erasure-dev libboost-type-erasure1.71-dev libboost-type-erasure1.71.0 libboost-wave-dev libboost-wave1.71-dev libboost-wave1.71.0 libboost1.71-dev libboost1.71-tools-dev libbrotli1 libbsd0 libcbor0.6 libcroco3 libcups2 libcurl4 libdbus-1-3 libdebhelper-perl libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3 libfido2-1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgcc-9-dev libgfortran-9-dev libgfortran5 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphite2-3 libgssapi3-heimdal libgudev-1.0-0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc15 libhx509-5-heimdal libibverbs-dev libibverbs1 libice6 libicu-dev libicu67 libimagequant0 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjsoncpp1 libkrb5-26-heimdal liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libllvm10 libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1 libmd4c0 libmtdev1 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopengl-dev libopengl0 libopenmpi-dev libopenmpi3 libpciaccess0 libpcre2-16-0 libpipeline1 libpmix2 libpng-dev libpsl5 libpthread-stubs0-dev libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libqt5concurrent5 libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 libqt5network5 libqt5opengl5 libqt5opengl5-dev libqt5printsupport5 libqt5sql5 libqt5test5 libqt5widgets5 libqt5xml5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsm6 libsqlite3-dev libssh-4 libsub-override-perl libtiff-dev libtiff5 libtiffxx5 libtool libuchardet0 libuv1 libvulkan-dev libvulkan1 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxnvctrl0 libxshmfence1 libxxf86vm1 m4 man-db mime-support mpi-default-bin mpi-default-dev node-jquery ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf python-matplotlib-data python3 python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-numpy python3-pil python3-pkg-resources python3-pyparsing python3-pyqt5 python3-scipy python3-sip python3-six python3.8 python3.8-dev python3.8-minimal qt5-qmake qt5-qmake-bin qtbase5-dev qtbase5-dev-tools qtchooser shared-mime-info sip-dev ttf-bitstream-vera ucf voronota x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc clustalx seaview cmake-doc ninja-build gcc-9-locales dh-make gcc-9-multilib gcc-9-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-9-multilib gfortran-9-doc libcoarrays-dev groff lrzip libboost-doc graphviz libboost1.71-doc gccxml libboost-contract1.71-dev libmpfrc++-dev libntl-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop cups-common libeigen3-doc libfftw3-doc icu-doc libjs-jquery-ui-docs liblcms2-utils libtool-doc liblzma-doc openmpi-doc pciutils libthai0 qt5-image-formats-plugins qtwayland5 lm-sensors sqlite3-doc gcj-jdk libx11-doc libxcb-doc libxext-doc m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl python3-doc python3-tk python3-venv python-cycler-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft gfortran python-numpy-doc python3-pytest python3-numpy-dbg python-pil-doc python3-pil-dbg python3-setuptools python-pyparsing-doc python3-pyqt5-dbg python-scipy-doc python3.8-venv python3.8-doc binfmt-support default-libmysqlclient-dev firebird-dev libpq-dev unixodbc-dev python-sip-doc Recommended packages: curl | wget | lynx dbus libarchive-cpio-perl libglib2.0-data xdg-user-dirs javascript-common libldap-common libcoarrays-openmpi-dev libpng-tools publicsuffix qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase libsasl2-modules mesa-vulkan-drivers | vulkan-icd libwacom-bin xauth libmail-sendmail-perl python3-tk python3-olefile python3-sip-dev The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils clustalw cmake cmake-data cpp-9 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dssp dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gcc-9 gcc-9-base gettext gettext-base gfortran-9 groff-base ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl libarchive13 libasan5 libasn1-8-heimdal libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-all-dev libboost-atomic-dev libboost-atomic1.71-dev libboost-atomic1.71.0 libboost-chrono-dev libboost-chrono1.71-dev libboost-chrono1.71.0 libboost-container-dev libboost-container1.71-dev libboost-container1.71.0 libboost-context-dev libboost-context1.71-dev libboost-context1.71.0 libboost-coroutine-dev libboost-coroutine1.71-dev libboost-coroutine1.71.0 libboost-date-time-dev libboost-date-time1.71-dev libboost-date-time1.71.0 libboost-dev libboost-exception-dev libboost-exception1.71-dev libboost-fiber-dev libboost-fiber1.71-dev libboost-fiber1.71.0 libboost-filesystem-dev libboost-filesystem1.71-dev libboost-filesystem1.71.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.71-dev libboost-graph-parallel1.71.0 libboost-graph1.71-dev libboost-graph1.71.0 libboost-iostreams-dev libboost-iostreams1.71-dev libboost-iostreams1.71.0 libboost-locale-dev libboost-locale1.71-dev libboost-locale1.71.0 libboost-log-dev libboost-log1.71-dev libboost-log1.71.0 libboost-math-dev libboost-math1.71-dev libboost-math1.71.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.71-dev libboost-mpi-python1.71.0 libboost-mpi1.71-dev libboost-mpi1.71.0 libboost-numpy-dev libboost-numpy1.71-dev libboost-numpy1.71.0 libboost-program-options-dev libboost-program-options1.71-dev libboost-program-options1.71.0 libboost-python-dev libboost-python1.71-dev libboost-python1.71.0 libboost-random-dev libboost-random1.71-dev libboost-random1.71.0 libboost-regex-dev libboost-regex1.71-dev libboost-regex1.71.0 libboost-serialization-dev libboost-serialization1.71-dev libboost-serialization1.71.0 libboost-stacktrace-dev libboost-stacktrace1.71-dev libboost-stacktrace1.71.0 libboost-system-dev libboost-system1.71-dev libboost-system1.71.0 libboost-test-dev libboost-test1.71-dev libboost-test1.71.0 libboost-thread-dev libboost-thread1.71-dev libboost-thread1.71.0 libboost-timer-dev libboost-timer1.71-dev libboost-timer1.71.0 libboost-tools-dev libboost-type-erasure-dev libboost-type-erasure1.71-dev libboost-type-erasure1.71.0 libboost-wave-dev libboost-wave1.71-dev libboost-wave1.71.0 libboost1.71-dev libboost1.71-tools-dev libbrotli1 libbsd0 libcbor0.6 libcroco3 libcups2 libcurl4 libdbus-1-3 libdebhelper-perl libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3 libfido2-1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgcc-9-dev libgfortran-9-dev libgfortran5 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphite2-3 libgssapi3-heimdal libgudev-1.0-0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc15 libhx509-5-heimdal libibverbs-dev libibverbs1 libice6 libicu-dev libicu67 libimagequant0 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjsoncpp1 libkrb5-26-heimdal liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libllvm10 libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1 libmd4c0 libmtdev1 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopengl-dev libopengl0 libopenmpi-dev libopenmpi3 libpciaccess0 libpcre2-16-0 libpipeline1 libpmix2 libpng-dev libpsl5 libpthread-stubs0-dev libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libqt5concurrent5 libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 libqt5network5 libqt5opengl5 libqt5opengl5-dev libqt5printsupport5 libqt5sql5 libqt5test5 libqt5widgets5 libqt5xml5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsm6 libsqlite3-dev libssh-4 libsub-override-perl libtiff-dev libtiff5 libtiffxx5 libtool libuchardet0 libuv1 libvulkan-dev libvulkan1 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxnvctrl0 libxshmfence1 libxxf86vm1 m4 man-db mime-support mpi-default-bin mpi-default-dev node-jquery ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf python-matplotlib-data python3 python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-numpy python3-pil python3-pkg-resources python3-pyparsing python3-pyqt5 python3-scipy python3-sip python3-six python3.8 python3.8-dev python3.8-minimal qt5-qmake qt5-qmake-bin qtbase5-dev qtbase5-dev-tools qtchooser sbuild-build-depends-openstructure-dummy shared-mime-info sip-dev ttf-bitstream-vera ucf voronota x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 387 newly installed, 0 to remove and 0 not upgraded. Need to get 170 MB of archives. After this operation, 847 MB of additional disk space will be used. 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groovy/main armhf libx11-6 armhf 2:1.6.10-3 [515 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main armhf libxext6 armhf 2:1.3.4-0ubuntu1 [24.2 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main armhf openssh-client armhf 1:8.3p1-1 [595 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main armhf libsigsegv2 armhf 2.12-2build1 [13.0 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main armhf m4 armhf 1.4.18-4 [187 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main armhf autoconf all 2.69-11.1 [321 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main armhf automake all 1:1.16.2-4ubuntu1 [548 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main armhf autopoint all 0.19.8.1-10build1 [412 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/universe armhf clustalw armhf 2.1+lgpl-6build1 [244 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main armhf cmake-data all 3.16.3-3ubuntu2 [1612 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main armhf libarchive13 armhf 3.4.3-2 [294 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main armhf libbrotli1 armhf 1.0.9-2 [270 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main armhf libroken18-heimdal armhf 7.7.0+dfsg-2 [34.5 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main armhf libasn1-8-heimdal armhf 7.7.0+dfsg-2 [140 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main armhf libheimbase1-heimdal armhf 7.7.0+dfsg-2 [24.3 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main armhf libhcrypto4-heimdal armhf 7.7.0+dfsg-2 [78.5 kB] Get:59 http://ftpmaster.internal/ubuntu groovy/main armhf libwind0-heimdal armhf 7.7.0+dfsg-2 [47.2 kB] Get:60 http://ftpmaster.internal/ubuntu groovy/main armhf libhx509-5-heimdal armhf 7.7.0+dfsg-2 [88.8 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main armhf libkrb5-26-heimdal armhf 7.7.0+dfsg-2 [170 kB] Get:62 http://ftpmaster.internal/ubuntu groovy/main armhf libheimntlm0-heimdal armhf 7.7.0+dfsg-2 [13.2 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main armhf libgssapi3-heimdal armhf 7.7.0+dfsg-2 [79.9 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2 [13.4 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main armhf libsasl2-2 armhf 2.1.27+dfsg-2 [42.7 kB] Get:66 http://ftpmaster.internal/ubuntu groovy/main armhf libldap-2.4-2 armhf 2.4.53+dfsg-1ubuntu1 [135 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main armhf libnghttp2-14 armhf 1.41.0-3 [57.8 kB] Get:68 http://ftpmaster.internal/ubuntu groovy/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build2 [48.9 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main armhf libssh-4 armhf 0.9.4-1ubuntu3 [147 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main armhf libcurl4 armhf 7.68.0-1ubuntu4 [202 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main armhf libjsoncpp1 armhf 1.7.4-3.1ubuntu2 [65.1 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main armhf librhash0 armhf 1.4.0-1 [126 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/main armhf cmake armhf 3.16.3-3ubuntu2 [3014 kB] Get:74 http://ftpmaster.internal/ubuntu groovy/universe armhf gcc-9-base armhf 9.3.0-18ubuntu1 [19.1 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/universe armhf cpp-9 armhf 9.3.0-18ubuntu1 [5884 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/universe armhf libasan5 armhf 9.3.0-18ubuntu1 [387 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/universe armhf libgcc-9-dev armhf 9.3.0-18ubuntu1 [685 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/universe armhf gcc-9 armhf 9.3.0-18ubuntu1 [6562 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main armhf libtool all 2.4.6-14 [161 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main armhf dh-autoreconf all 19 [16.1 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/main armhf libdebhelper-perl all 13.2.1ubuntu1 [63.6 kB] Get:82 http://ftpmaster.internal/ubuntu groovy/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:84 http://ftpmaster.internal/ubuntu groovy/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:85 http://ftpmaster.internal/ubuntu groovy/main armhf dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:86 http://ftpmaster.internal/ubuntu groovy/main armhf dwz armhf 0.13-5 [153 kB] Get:87 http://ftpmaster.internal/ubuntu groovy/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:88 http://ftpmaster.internal/ubuntu groovy/main armhf gettext armhf 0.19.8.1-10build1 [835 kB] Get:89 http://ftpmaster.internal/ubuntu groovy/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:90 http://ftpmaster.internal/ubuntu groovy/main armhf po-debconf all 1.0.21 [233 kB] Get:91 http://ftpmaster.internal/ubuntu groovy/main armhf debhelper all 13.2.1ubuntu1 [879 kB] Get:92 http://ftpmaster.internal/ubuntu groovy/main armhf python3-lib2to3 all 3.8.5-1 [75.6 kB] Get:93 http://ftpmaster.internal/ubuntu groovy/main armhf python3-distutils all 3.8.5-1 [141 kB] Get:94 http://ftpmaster.internal/ubuntu groovy/universe armhf dh-python all 4.20200925 [92.2 kB] Get:95 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-program-options1.71.0 armhf 1.71.0-6ubuntu9 [313 kB] Get:96 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-thread1.71.0 armhf 1.71.0-6ubuntu9 [236 kB] Get:97 http://ftpmaster.internal/ubuntu groovy/universe armhf dssp armhf 3.0.0-3build1 [229 kB] Get:98 http://ftpmaster.internal/ubuntu groovy/main armhf libfreetype6 armhf 2.10.2+dfsg-3 [289 kB] Get:99 http://ftpmaster.internal/ubuntu groovy/main armhf fonts-dejavu-core all 2.37-2 [1041 kB] Get:100 http://ftpmaster.internal/ubuntu groovy/universe armhf ttf-bitstream-vera all 1.10-8 [352 kB] Get:101 http://ftpmaster.internal/ubuntu groovy/main armhf fontconfig-config all 2.13.1-2ubuntu3 [28.8 kB] Get:102 http://ftpmaster.internal/ubuntu groovy/main armhf libfontconfig1 armhf 2.13.1-2ubuntu3 [96.1 kB] Get:103 http://ftpmaster.internal/ubuntu groovy/main armhf fontconfig armhf 2.13.1-2ubuntu3 [170 kB] Get:104 http://ftpmaster.internal/ubuntu groovy/universe armhf fonts-lyx all 2.3.5.2-1 [154 kB] Get:105 http://ftpmaster.internal/ubuntu groovy/main armhf libgfortran5 armhf 10.2.0-11ubuntu1 [250 kB] Get:106 http://ftpmaster.internal/ubuntu groovy/universe armhf libgfortran-9-dev armhf 9.3.0-18ubuntu1 [305 kB] Get:107 http://ftpmaster.internal/ubuntu groovy/universe armhf gfortran-9 armhf 9.3.0-18ubuntu1 [6261 kB] Get:108 http://ftpmaster.internal/ubuntu groovy/main armhf libnl-3-200 armhf 3.4.0-1 [46.1 kB] Get:109 http://ftpmaster.internal/ubuntu groovy/main armhf libnl-route-3-200 armhf 3.4.0-1 [124 kB] Get:110 http://ftpmaster.internal/ubuntu groovy/main armhf libibverbs1 armhf 31.0-1 [49.2 kB] Get:111 http://ftpmaster.internal/ubuntu groovy/main armhf ibverbs-providers armhf 31.0-1 [22.4 kB] Get:112 http://ftpmaster.internal/ubuntu groovy/main armhf icu-devtools armhf 67.1-4 [169 kB] Get:113 http://ftpmaster.internal/ubuntu groovy/main armhf libavahi-common-data armhf 0.8-3ubuntu1 [25.1 kB] Get:114 http://ftpmaster.internal/ubuntu groovy/main armhf libavahi-common3 armhf 0.8-3ubuntu1 [18.5 kB] Get:115 http://ftpmaster.internal/ubuntu groovy/main armhf libavahi-client3 armhf 0.8-3ubuntu1 [22.0 kB] Get:116 http://ftpmaster.internal/ubuntu groovy/main armhf libblas3 armhf 3.9.0-3ubuntu1 [97.8 kB] Get:117 http://ftpmaster.internal/ubuntu groovy/main armhf libboost1.71-dev armhf 1.71.0-6ubuntu9 [9070 kB] Get:118 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-dev armhf 1.71.0.0ubuntu4 [3504 B] Get:119 http://ftpmaster.internal/ubuntu groovy/main armhf libboost1.71-tools-dev armhf 1.71.0-6ubuntu9 [1269 kB] Get:120 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-tools-dev armhf 1.71.0.0ubuntu4 [3468 B] Get:121 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-atomic1.71.0 armhf 1.71.0-6ubuntu9 [205 kB] Get:122 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-atomic1.71-dev armhf 1.71.0-6ubuntu9 [205 kB] Get:123 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-atomic-dev armhf 1.71.0.0ubuntu4 [3608 B] Get:124 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-chrono1.71.0 armhf 1.71.0-6ubuntu9 [212 kB] Get:125 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-chrono1.71-dev armhf 1.71.0-6ubuntu9 [220 kB] Get:126 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-chrono-dev armhf 1.71.0.0ubuntu4 [3924 B] Get:127 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-container1.71.0 armhf 1.71.0-6ubuntu9 [228 kB] Get:128 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-container1.71-dev armhf 1.71.0-6ubuntu9 [233 kB] Get:129 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-container-dev armhf 1.71.0.0ubuntu4 [3772 B] Get:130 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-date-time1.71.0 armhf 1.71.0-6ubuntu9 [215 kB] Get:131 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-serialization1.71.0 armhf 1.71.0-6ubuntu9 [282 kB] Get:132 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-serialization1.71-dev armhf 1.71.0-6ubuntu9 [356 kB] Get:133 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-date-time1.71-dev armhf 1.71.0-6ubuntu9 [229 kB] Get:134 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-system1.71.0 armhf 1.71.0-6ubuntu9 [205 kB] Get:135 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-system1.71-dev armhf 1.71.0-6ubuntu9 [205 kB] Get:136 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-thread1.71-dev armhf 1.71.0-6ubuntu9 [252 kB] Get:137 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-context1.71.0 armhf 1.71.0-6ubuntu9 [207 kB] Get:138 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-context1.71-dev armhf 1.71.0-6ubuntu9 [208 kB] Get:139 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-context-dev armhf 1.71.0.0ubuntu4 [3500 B] Get:140 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-coroutine1.71.0 armhf 1.71.0-6ubuntu9 [213 kB] Get:141 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-coroutine1.71-dev armhf 1.71.0-6ubuntu9 [220 kB] Get:142 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-coroutine-dev armhf 1.71.0.0ubuntu4 [3576 B] Get:143 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-date-time-dev armhf 1.71.0.0ubuntu4 [3300 B] Get:144 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-exception1.71-dev armhf 1.71.0-6ubuntu9 [203 kB] Get:145 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-exception-dev armhf 1.71.0.0ubuntu4 [3288 B] Get:146 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-filesystem1.71.0 armhf 1.71.0-6ubuntu9 [234 kB] Get:147 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-filesystem1.71-dev armhf 1.71.0-6ubuntu9 [246 kB] Get:148 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-fiber1.71.0 armhf 1.71.0-6ubuntu9 [223 kB] Get:149 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-fiber1.71-dev armhf 1.71.0-6ubuntu9 [238 kB] Get:150 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-fiber-dev armhf 1.71.0.0ubuntu4 [3728 B] Get:151 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-filesystem-dev armhf 1.71.0.0ubuntu4 [3336 B] Get:152 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-regex1.71.0 armhf 1.71.0-6ubuntu9 [422 kB] Get:153 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-graph1.71.0 armhf 1.71.0-6ubuntu9 [277 kB] Get:154 http://ftpmaster.internal/ubuntu groovy/main armhf libicu-dev armhf 67.1-4 [9338 kB] Get:155 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-regex1.71-dev armhf 1.71.0-6ubuntu9 [557 kB] Get:156 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-test1.71.0 armhf 1.71.0-6ubuntu9 [397 kB] Get:157 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-test1.71-dev armhf 1.71.0-6ubuntu9 [511 kB] Get:158 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-graph1.71-dev armhf 1.71.0-6ubuntu9 [318 kB] Get:159 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-graph-dev armhf 1.71.0.0ubuntu4 [3404 B] Get:160 http://ftpmaster.internal/ubuntu groovy/main armhf libevent-2.1-7 armhf 2.1.12-stable-1 [119 kB] Get:161 http://ftpmaster.internal/ubuntu groovy/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-1 [78.2 kB] Get:162 http://ftpmaster.internal/ubuntu groovy/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-1 [6904 B] Get:163 http://ftpmaster.internal/ubuntu groovy/universe armhf libhwloc15 armhf 2.2.0+dfsg-3 [110 kB] Get:164 http://ftpmaster.internal/ubuntu groovy/main armhf libpciaccess0 armhf 0.16-1 [15.4 kB] Get:165 http://ftpmaster.internal/ubuntu groovy/main armhf libxnvctrl0 armhf 440.82-0ubuntu1 [10.1 kB] Get:166 http://ftpmaster.internal/ubuntu groovy/main armhf ocl-icd-libopencl1 armhf 2.2.11-1ubuntu1 [28.7 kB] Get:167 http://ftpmaster.internal/ubuntu groovy/universe armhf libhwloc-plugins armhf 2.2.0+dfsg-3 [12.7 kB] Get:168 http://ftpmaster.internal/ubuntu groovy/universe armhf libpmix2 armhf 3.1.5-1 [394 kB] Get:169 http://ftpmaster.internal/ubuntu groovy/universe armhf libopenmpi3 armhf 4.0.3-6ubuntu2 [1728 kB] Get:170 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-mpi1.71.0 armhf 1.71.0-6ubuntu9 [237 kB] Get:171 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-graph-parallel1.71.0 armhf 1.71.0-6ubuntu9 [246 kB] Get:172 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-graph-parallel1.71-dev armhf 1.71.0-6ubuntu9 [259 kB] Get:173 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-graph-parallel-dev armhf 1.71.0.0ubuntu4 [3428 B] Get:174 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-iostreams1.71.0 armhf 1.71.0-6ubuntu9 [228 kB] Get:175 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-iostreams1.71-dev armhf 1.71.0-6ubuntu9 [246 kB] Get:176 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-iostreams-dev armhf 1.71.0.0ubuntu4 [3288 B] Get:177 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-locale1.71.0 armhf 1.71.0-6ubuntu9 [406 kB] Get:178 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-locale1.71-dev armhf 1.71.0-6ubuntu9 [554 kB] Get:179 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-locale-dev armhf 1.71.0.0ubuntu4 [3620 B] Get:180 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-log1.71.0 armhf 1.71.0-6ubuntu9 [528 kB] Get:181 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-log1.71-dev armhf 1.71.0-6ubuntu9 [799 kB] Get:182 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-log-dev armhf 1.71.0.0ubuntu4 [3500 B] Get:183 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-math1.71.0 armhf 1.71.0-6ubuntu9 [325 kB] Get:184 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-math1.71-dev armhf 1.71.0-6ubuntu9 [449 kB] Get:185 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-math-dev armhf 1.71.0.0ubuntu4 [3492 B] Get:186 http://ftpmaster.internal/ubuntu groovy/universe armhf openmpi-common all 4.0.3-6ubuntu2 [151 kB] Get:187 http://ftpmaster.internal/ubuntu groovy/main armhf libnl-3-dev armhf 3.4.0-1 [87.1 kB] Get:188 http://ftpmaster.internal/ubuntu groovy/main armhf libnl-route-3-dev armhf 3.4.0-1 [150 kB] Get:189 http://ftpmaster.internal/ubuntu groovy/main armhf libibverbs-dev armhf 31.0-1 [176 kB] Get:190 http://ftpmaster.internal/ubuntu groovy/main armhf libnuma-dev armhf 2.0.12-1build1 [30.4 kB] Get:191 http://ftpmaster.internal/ubuntu groovy/main armhf libltdl7 armhf 2.4.6-14 [35.4 kB] Get:192 http://ftpmaster.internal/ubuntu groovy/main armhf libltdl-dev armhf 2.4.6-14 [160 kB] Get:193 http://ftpmaster.internal/ubuntu groovy/universe armhf libhwloc-dev armhf 2.2.0+dfsg-3 [182 kB] Get:194 http://ftpmaster.internal/ubuntu groovy/main armhf libevent-extra-2.1-7 armhf 2.1.12-stable-1 [50.7 kB] Get:195 http://ftpmaster.internal/ubuntu groovy/main armhf libevent-openssl-2.1-7 armhf 2.1.12-stable-1 [11.7 kB] Get:196 http://ftpmaster.internal/ubuntu groovy/main armhf libevent-dev armhf 2.1.12-stable-1 [247 kB] Get:197 http://ftpmaster.internal/ubuntu groovy/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu2 [149 kB] Get:198 http://ftpmaster.internal/ubuntu groovy/universe armhf openmpi-bin armhf 4.0.3-6ubuntu2 [65.9 kB] Get:199 http://ftpmaster.internal/ubuntu groovy/universe armhf libopenmpi-dev armhf 4.0.3-6ubuntu2 [804 kB] Get:200 http://ftpmaster.internal/ubuntu groovy/universe armhf mpi-default-dev armhf 1.13 [3748 B] Get:201 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-mpi1.71-dev armhf 1.71.0-6ubuntu9 [276 kB] Get:202 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-mpi-dev armhf 1.71.0.0ubuntu4 [3376 B] Get:203 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-python1.71.0 armhf 1.71.0-6ubuntu9 [265 kB] Get:204 http://ftpmaster.internal/ubuntu groovy/universe armhf mpi-default-bin armhf 1.13 [2968 B] Get:205 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-mpi-python1.71.0 armhf 1.71.0-6ubuntu9 [308 kB] Get:206 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-mpi-python1.71-dev armhf 1.71.0-6ubuntu9 [210 kB] Get:207 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-mpi-python-dev armhf 1.71.0.0ubuntu4 [3416 B] Get:208 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-numpy1.71.0 armhf 1.71.0-6ubuntu9 [212 kB] Get:209 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-numpy1.71-dev armhf 1.71.0-6ubuntu9 [218 kB] Get:210 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-numpy-dev armhf 1.71.0.0ubuntu4 [3332 B] Get:211 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-program-options1.71-dev armhf 1.71.0-6ubuntu9 [376 kB] Get:212 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-program-options-dev armhf 1.71.0.0ubuntu4 [3312 B] Get:213 http://ftpmaster.internal/ubuntu groovy/main armhf libpython3.8 armhf 3.8.6-1 [1374 kB] Get:214 http://ftpmaster.internal/ubuntu groovy/main armhf libexpat1-dev armhf 2.2.9-1build1 [99.8 kB] Get:215 http://ftpmaster.internal/ubuntu groovy/main armhf libpython3.8-dev armhf 3.8.6-1 [3014 kB] Get:216 http://ftpmaster.internal/ubuntu groovy/main armhf libpython3-dev armhf 3.8.2-0ubuntu2 [7236 B] Get:217 http://ftpmaster.internal/ubuntu groovy/main armhf python3.8-dev armhf 3.8.6-1 [516 kB] Get:218 http://ftpmaster.internal/ubuntu groovy/main armhf python3-dev armhf 3.8.2-0ubuntu2 [1212 B] Get:219 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-python1.71-dev armhf 1.71.0-6ubuntu9 [294 kB] Get:220 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-python-dev armhf 1.71.0.0ubuntu4 [3588 B] Get:221 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-random1.71.0 armhf 1.71.0-6ubuntu9 [211 kB] Get:222 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-random1.71-dev armhf 1.71.0-6ubuntu9 [214 kB] Get:223 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-random-dev armhf 1.71.0.0ubuntu4 [3300 B] Get:224 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-regex-dev armhf 1.71.0.0ubuntu4 [3560 B] Get:225 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-serialization-dev armhf 1.71.0.0ubuntu4 [3520 B] Get:226 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-stacktrace1.71.0 armhf 1.71.0-6ubuntu9 [236 kB] Get:227 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-stacktrace1.71-dev armhf 1.71.0-6ubuntu9 [216 kB] Get:228 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-stacktrace-dev armhf 1.71.0.0ubuntu4 [3304 B] Get:229 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-system-dev armhf 1.71.0.0ubuntu4 [3440 B] Get:230 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-test-dev armhf 1.71.0.0ubuntu4 [3328 B] Get:231 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-thread-dev armhf 1.71.0.0ubuntu4 [3324 B] Get:232 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-timer1.71.0 armhf 1.71.0-6ubuntu9 [208 kB] Get:233 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-timer1.71-dev armhf 1.71.0-6ubuntu9 [210 kB] Get:234 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-timer-dev armhf 1.71.0.0ubuntu4 [3420 B] Get:235 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-type-erasure1.71.0 armhf 1.71.0-6ubuntu9 [216 kB] Get:236 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-type-erasure1.71-dev armhf 1.71.0-6ubuntu9 [222 kB] Get:237 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-type-erasure-dev armhf 1.71.0.0ubuntu4 [3396 B] Get:238 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-wave1.71.0 armhf 1.71.0-6ubuntu9 [364 kB] Get:239 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-wave1.71-dev armhf 1.71.0-6ubuntu9 [450 kB] Get:240 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-wave-dev armhf 1.71.0.0ubuntu4 [3332 B] Get:241 http://ftpmaster.internal/ubuntu groovy/universe armhf libboost-all-dev armhf 1.71.0.0ubuntu4 [2468 B] Get:242 http://ftpmaster.internal/ubuntu groovy/main armhf libcups2 armhf 2.3.3-3ubuntu1 [199 kB] Get:243 http://ftpmaster.internal/ubuntu groovy/universe armhf libdouble-conversion3 armhf 3.1.5-5ubuntu1 [35.5 kB] Get:244 http://ftpmaster.internal/ubuntu groovy/main armhf libdrm-amdgpu1 armhf 2.4.102-1ubuntu1 [16.7 kB] Get:245 http://ftpmaster.internal/ubuntu groovy/main armhf libdrm-nouveau2 armhf 2.4.102-1ubuntu1 [14.1 kB] Get:246 http://ftpmaster.internal/ubuntu groovy/main armhf libdrm-radeon1 armhf 2.4.102-1ubuntu1 [17.2 kB] Get:247 http://ftpmaster.internal/ubuntu groovy/main armhf libglvnd0 armhf 1.3.2-1 [49.1 kB] Get:248 http://ftpmaster.internal/ubuntu groovy/main armhf libwayland-server0 armhf 1.18.0-2~exp1.1 [24.8 kB] Get:249 http://ftpmaster.internal/ubuntu groovy/main armhf libgbm1 armhf 20.1.8-1 [27.9 kB] Get:250 http://ftpmaster.internal/ubuntu groovy/main armhf libglapi-mesa armhf 20.1.8-1 [32.4 kB] Get:251 http://ftpmaster.internal/ubuntu groovy/main armhf libwayland-client0 armhf 1.18.0-2~exp1.1 [18.8 kB] Get:252 http://ftpmaster.internal/ubuntu groovy/main armhf libx11-xcb1 armhf 2:1.6.10-3 [8744 B] Get:253 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-dri2-0 armhf 1.14-2 [6688 B] Get:254 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-dri3-0 armhf 1.14-2 [6288 B] Get:255 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-present0 armhf 1.14-2 [5476 B] Get:256 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-sync1 armhf 1.14-2 [8336 B] Get:257 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-xfixes0 armhf 1.14-2 [9204 B] Get:258 http://ftpmaster.internal/ubuntu groovy/main armhf libxshmfence1 armhf 1.3-1 [4792 B] Get:259 http://ftpmaster.internal/ubuntu groovy/main armhf libegl-mesa0 armhf 20.1.8-1 [80.5 kB] Get:260 http://ftpmaster.internal/ubuntu groovy/main armhf libegl1 armhf 1.3.2-1 [27.2 kB] Get:261 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-glx0 armhf 1.14-2 [20.8 kB] Get:262 http://ftpmaster.internal/ubuntu groovy/main armhf libxdamage1 armhf 1:1.1.5-2 [6232 B] Get:263 http://ftpmaster.internal/ubuntu groovy/main armhf libxfixes3 armhf 1:5.0.3-2 [9340 B] Get:264 http://ftpmaster.internal/ubuntu groovy/main armhf libxxf86vm1 armhf 1:1.1.4-1build1 [9364 B] Get:265 http://ftpmaster.internal/ubuntu groovy/main armhf libllvm10 armhf 1:10.0.1-6 [14.3 MB] Get:266 http://ftpmaster.internal/ubuntu groovy/main armhf libsensors-config all 1:3.6.0-2ubuntu1 [6092 B] Get:267 http://ftpmaster.internal/ubuntu groovy/main armhf libsensors5 armhf 1:3.6.0-2ubuntu1 [24.3 kB] Get:268 http://ftpmaster.internal/ubuntu groovy/main armhf libgl1-mesa-dri armhf 20.1.8-1 [5855 kB] Get:269 http://ftpmaster.internal/ubuntu groovy/main armhf libglx-mesa0 armhf 20.1.8-1 [122 kB] Get:270 http://ftpmaster.internal/ubuntu groovy/main armhf libglx0 armhf 1.3.2-1 [30.3 kB] Get:271 http://ftpmaster.internal/ubuntu groovy/main armhf libgl1 armhf 1.3.2-1 [86.0 kB] Get:272 http://ftpmaster.internal/ubuntu groovy/main armhf xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:273 http://ftpmaster.internal/ubuntu groovy/main armhf x11proto-dev all 2020.1-1 [594 kB] Get:274 http://ftpmaster.internal/ubuntu groovy/main armhf x11proto-core-dev all 2020.1-1 [2620 B] Get:275 http://ftpmaster.internal/ubuntu groovy/main armhf libxau-dev armhf 1:1.0.9-0ubuntu1 [8952 B] Get:276 http://ftpmaster.internal/ubuntu groovy/main armhf libxdmcp-dev armhf 1:1.1.3-0ubuntu1 [24.0 kB] Get:277 http://ftpmaster.internal/ubuntu groovy/main armhf xtrans-dev all 1.4.0-1 [68.9 kB] Get:278 http://ftpmaster.internal/ubuntu groovy/main armhf libpthread-stubs0-dev armhf 0.4-1 [5384 B] Get:279 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb1-dev armhf 1.14-2 [79.0 kB] Get:280 http://ftpmaster.internal/ubuntu groovy/main armhf libx11-dev armhf 2:1.6.10-3 [589 kB] Get:281 http://ftpmaster.internal/ubuntu groovy/main armhf libglx-dev armhf 1.3.2-1 [14.0 kB] Get:282 http://ftpmaster.internal/ubuntu groovy/main armhf libgl-dev armhf 1.3.2-1 [97.8 kB] Get:283 http://ftpmaster.internal/ubuntu groovy/main armhf libegl-dev armhf 1.3.2-1 [17.2 kB] Get:284 http://ftpmaster.internal/ubuntu groovy/main armhf libfftw3-double3 armhf 3.3.8-2ubuntu6 [427 kB] Get:285 http://ftpmaster.internal/ubuntu groovy/main armhf libfftw3-single3 armhf 3.3.8-2ubuntu6 [410 kB] Get:286 http://ftpmaster.internal/ubuntu groovy/main armhf libfftw3-bin armhf 3.3.8-2ubuntu6 [24.6 kB] Get:287 http://ftpmaster.internal/ubuntu groovy/main armhf libfftw3-dev armhf 3.3.8-2ubuntu6 [807 kB] Get:288 http://ftpmaster.internal/ubuntu groovy/main armhf libgles1 armhf 1.3.2-1 [10.3 kB] Get:289 http://ftpmaster.internal/ubuntu groovy/main armhf libgles2 armhf 1.3.2-1 [15.8 kB] Get:290 http://ftpmaster.internal/ubuntu groovy/main armhf libgles-dev armhf 1.3.2-1 [47.9 kB] Get:291 http://ftpmaster.internal/ubuntu groovy/main armhf libglu1-mesa armhf 9.0.1-1build1 [130 kB] Get:292 http://ftpmaster.internal/ubuntu groovy/main armhf libopengl0 armhf 1.3.2-1 [30.2 kB] Get:293 http://ftpmaster.internal/ubuntu groovy/main armhf libopengl-dev armhf 1.3.2-1 [3572 B] Get:294 http://ftpmaster.internal/ubuntu groovy/main armhf libglvnd-dev armhf 1.3.2-1 [11.5 kB] Get:295 http://ftpmaster.internal/ubuntu groovy/main armhf libgl1-mesa-dev armhf 20.1.8-1 [6136 B] Get:296 http://ftpmaster.internal/ubuntu groovy/main armhf libglu1-mesa-dev armhf 9.0.1-1build1 [170 kB] Get:297 http://ftpmaster.internal/ubuntu groovy/main armhf libgraphite2-3 armhf 1.3.14-1 [62.7 kB] Get:298 http://ftpmaster.internal/ubuntu groovy/main armhf libgudev-1.0-0 armhf 1:233-1 [12.0 kB] Get:299 http://ftpmaster.internal/ubuntu groovy/main armhf libharfbuzz0b armhf 2.6.4-1ubuntu5 [288 kB] Get:300 http://ftpmaster.internal/ubuntu groovy/main armhf x11-common all 1:7.7+19ubuntu14 [22.3 kB] Get:301 http://ftpmaster.internal/ubuntu groovy/main armhf libice6 armhf 2:1.0.10-1 [33.5 kB] Get:302 http://ftpmaster.internal/ubuntu groovy/main armhf libimagequant0 armhf 2.12.2-1.1 [26.2 kB] Get:303 http://ftpmaster.internal/ubuntu groovy/main armhf libevdev2 armhf 1.9.1+dfsg-1 [25.6 kB] Get:304 http://ftpmaster.internal/ubuntu groovy/main armhf libwacom-common all 1.3-2ubuntu1 [44.3 kB] Get:305 http://ftpmaster.internal/ubuntu groovy/main armhf libwacom2 armhf 1.3-2ubuntu1 [16.8 kB] Get:306 http://ftpmaster.internal/ubuntu groovy/main armhf libinput-bin armhf 1.16.1-1 [17.7 kB] Get:307 http://ftpmaster.internal/ubuntu groovy/main armhf libmtdev1 armhf 1.1.6-1 [12.9 kB] Get:308 http://ftpmaster.internal/ubuntu groovy/main armhf libinput10 armhf 1.16.1-1 [96.3 kB] Get:309 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg-turbo8 armhf 2.0.3-0ubuntu2 [90.4 kB] Get:310 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg-turbo8-dev armhf 2.0.3-0ubuntu2 [203 kB] Get:311 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:312 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:313 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:314 http://ftpmaster.internal/ubuntu groovy/main armhf node-jquery all 3.5.1+dfsg-4 [309 kB] Get:315 http://ftpmaster.internal/ubuntu groovy/main armhf libjs-jquery all 3.5.1+dfsg-4 [2308 B] Get:316 http://ftpmaster.internal/ubuntu groovy/universe armhf libjs-jquery-ui all 1.12.1+dfsg-6 [231 kB] Get:317 http://ftpmaster.internal/ubuntu groovy/main armhf liblapack3 armhf 3.9.0-3ubuntu1 [1637 kB] Get:318 http://ftpmaster.internal/ubuntu groovy/universe armhf liblbfgsb0 armhf 3.0+dfsg.3-9 [24.9 kB] Get:319 http://ftpmaster.internal/ubuntu groovy/main armhf liblcms2-2 armhf 2.9-4 [115 kB] Get:320 http://ftpmaster.internal/ubuntu groovy/universe armhf libmd4c0 armhf 0.4.4-1 [35.0 kB] Get:321 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre2-16-0 armhf 10.34-7 [156 kB] Get:322 http://ftpmaster.internal/ubuntu groovy/main armhf libpng-dev armhf 1.6.37-3 [163 kB] Get:323 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5core5a armhf 5.14.2+dfsg-6 [1482 kB] Get:324 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5concurrent5 armhf 5.14.2+dfsg-6 [32.5 kB] Get:325 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5dbus5 armhf 5.14.2+dfsg-6 [179 kB] Get:326 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5network5 armhf 5.14.2+dfsg-6 [574 kB] Get:327 http://ftpmaster.internal/ubuntu groovy/main armhf libsm6 armhf 2:1.2.3-1 [14.1 kB] Get:328 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [9704 B] Get:329 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-shm0 armhf 1.14-2 [5540 B] Get:330 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-util1 armhf 0.4.0-0ubuntu3 [10.3 kB] Get:331 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-image0 armhf 0.4.0-1build1 [11.1 kB] Get:332 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-keysyms1 armhf 0.4.0-1build1 [7732 B] Get:333 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-randr0 armhf 1.14-2 [15.6 kB] Get:334 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-render0 armhf 1.14-2 [14.2 kB] Get:335 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-render-util0 armhf 0.3.9-1build1 [8924 B] Get:336 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-shape0 armhf 1.14-2 [5796 B] Get:337 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-xinerama0 armhf 1.14-2 [5052 B] Get:338 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-xinput0 armhf 1.14-2 [26.8 kB] Get:339 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-xkb1 armhf 1.14-2 [26.5 kB] Get:340 http://ftpmaster.internal/ubuntu groovy/main armhf libxkbcommon0 armhf 0.10.0-1 [87.6 kB] Get:341 http://ftpmaster.internal/ubuntu groovy/main armhf libxkbcommon-x11-0 armhf 0.10.0-1 [12.0 kB] Get:342 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5gui5 armhf 5.14.2+dfsg-6 [2480 kB] Get:343 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5widgets5 armhf 5.14.2+dfsg-6 [2043 kB] Get:344 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5xml5 armhf 5.14.2+dfsg-6 [93.8 kB] Get:345 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5designer5 armhf 5.14.2-3 [2625 kB] Get:346 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5sql5 armhf 5.14.2+dfsg-6 [98.8 kB] Get:347 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5help5 armhf 5.14.2-3 [108 kB] Get:348 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5opengl5 armhf 5.14.2+dfsg-6 [116 kB] Get:349 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5printsupport5 armhf 5.14.2+dfsg-6 [177 kB] Get:350 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5test5 armhf 5.14.2+dfsg-6 [120 kB] Get:351 http://ftpmaster.internal/ubuntu groovy/main armhf libvulkan1 armhf 1.2.141.0-1 [83.0 kB] Get:352 http://ftpmaster.internal/ubuntu groovy/main armhf libvulkan-dev armhf 1.2.141.0-1 [525 kB] Get:353 http://ftpmaster.internal/ubuntu groovy/main armhf x11proto-xext-dev all 2020.1-1 [2620 B] Get:354 http://ftpmaster.internal/ubuntu groovy/main armhf libxext-dev armhf 2:1.3.4-0ubuntu1 [78.4 kB] Get:355 http://ftpmaster.internal/ubuntu groovy/universe armhf qt5-qmake-bin armhf 5.14.2+dfsg-6 [868 kB] Get:356 http://ftpmaster.internal/ubuntu groovy/universe armhf qtchooser armhf 66-2build1 [22.3 kB] Get:357 http://ftpmaster.internal/ubuntu groovy/universe armhf qt5-qmake armhf 5.14.2+dfsg-6 [201 kB] Get:358 http://ftpmaster.internal/ubuntu groovy/universe armhf qtbase5-dev-tools armhf 5.14.2+dfsg-6 [616 kB] Get:359 http://ftpmaster.internal/ubuntu groovy/universe armhf qtbase5-dev armhf 5.14.2+dfsg-6 [968 kB] Get:360 http://ftpmaster.internal/ubuntu groovy/universe armhf libqt5opengl5-dev armhf 5.14.2+dfsg-6 [40.5 kB] Get:361 http://ftpmaster.internal/ubuntu groovy/main armhf libsqlite3-dev armhf 3.33.0-1 [678 kB] Get:362 http://ftpmaster.internal/ubuntu groovy/main armhf libjbig0 armhf 2.1-3.1build1 [23.9 kB] Get:363 http://ftpmaster.internal/ubuntu groovy/main armhf libjbig-dev armhf 2.1-3.1build1 [22.9 kB] Get:364 http://ftpmaster.internal/ubuntu groovy/main armhf liblzma-dev armhf 5.2.4-1ubuntu1 [139 kB] Get:365 http://ftpmaster.internal/ubuntu groovy/main armhf libwebp6 armhf 0.6.1-2 [152 kB] Get:366 http://ftpmaster.internal/ubuntu groovy/main armhf libtiff5 armhf 4.1.0+git191117-2build1 [143 kB] Get:367 http://ftpmaster.internal/ubuntu groovy/main armhf libtiffxx5 armhf 4.1.0+git191117-2build1 [5800 B] Get:368 http://ftpmaster.internal/ubuntu groovy/main armhf libtiff-dev armhf 4.1.0+git191117-2build1 [265 kB] Get:369 http://ftpmaster.internal/ubuntu groovy/main armhf libwebpdemux2 armhf 0.6.1-2 [8760 B] Get:370 http://ftpmaster.internal/ubuntu groovy/main armhf libwebpmux3 armhf 0.6.1-2 [16.0 kB] Get:371 http://ftpmaster.internal/ubuntu groovy/main armhf pkg-config armhf 0.29.2-1ubuntu1 [43.4 kB] Get:372 http://ftpmaster.internal/ubuntu groovy/universe armhf python-matplotlib-data all 3.3.0-3 [3803 kB] Get:373 http://ftpmaster.internal/ubuntu groovy/main armhf python3-six all 1.15.0-1 [12.0 kB] Get:374 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-cycler all 0.10.0-3 [8132 B] Get:375 http://ftpmaster.internal/ubuntu groovy/main armhf python3-dateutil all 2.8.1-4 [79.8 kB] Get:376 http://ftpmaster.internal/ubuntu groovy/main armhf python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] Get:377 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-kiwisolver armhf 1.2.0-1 [45.8 kB] Get:378 http://ftpmaster.internal/ubuntu groovy/main armhf python3-pyparsing all 2.4.7-1 [61.4 kB] Get:379 http://ftpmaster.internal/ubuntu groovy/main armhf python3-numpy armhf 1:1.18.4-1ubuntu1 [3093 kB] Get:380 http://ftpmaster.internal/ubuntu groovy/main armhf python3-pil armhf 7.2.0-1 [344 kB] Get:381 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-matplotlib armhf 3.3.0-3 [3341 kB] Get:382 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-sip armhf 4.19.24+dfsg-1 [77.9 kB] Get:383 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-pyqt5 armhf 5.15.0+dfsg-1 [1920 kB] Get:384 http://ftpmaster.internal/ubuntu groovy/universe armhf sip-dev armhf 4.19.24+dfsg-1 [155 kB] Get:385 http://ftpmaster.internal/ubuntu groovy/universe armhf libeigen3-dev all 3.3.7-3 [815 kB] Get:386 http://ftpmaster.internal/ubuntu groovy/universe armhf python3-scipy armhf 1.5.2-2 [10.3 MB] Get:387 http://ftpmaster.internal/ubuntu groovy/universe armhf voronota armhf 1.21.2744-1build1 [1812 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 170 MB in 9s (18.7 MB/s) Selecting previously unselected package libpython3.8-minimal:armhf. (Reading database ... 12780 files and directories currently installed.) Preparing to unpack .../libpython3.8-minimal_3.8.6-1_armhf.deb ... Unpacking libpython3.8-minimal:armhf (3.8.6-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.2.9-1build1_armhf.deb ... Unpacking libexpat1:armhf (2.2.9-1build1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../python3.8-minimal_3.8.6-1_armhf.deb ... Unpacking python3.8-minimal (3.8.6-1) ... Setting up libpython3.8-minimal:armhf (3.8.6-1) ... Setting up libexpat1:armhf (2.2.9-1build1) ... Setting up python3.8-minimal (3.8.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13071 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.8.2-0ubuntu2_armhf.deb ... Unpacking python3-minimal (3.8.2-0ubuntu2) ... Selecting previously unselected package mime-support. 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Setting up liblapack3:armhf (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libvulkan-dev:armhf (1.2.141.0-1) ... Setting up libxcb1:armhf (1.14-2) ... Setting up libboost-exception1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libxcb-xfixes0:armhf (1.14-2) ... Setting up libxau-dev:armhf (1:1.0.9-0ubuntu1) ... Setting up qt5-qmake:armhf (5.14.2+dfsg-6) ... Setting up libxcb-xinput0:armhf (1.14-2) ... Setting up libboost-log1.71.0 (1.71.0-6ubuntu9) ... Setting up libtool (2.4.6-14) ... Setting up libarchive13:armhf (3.4.3-2) ... Setting up libxcb-render0:armhf (1.14-2) ... Setting up libboost-chrono-dev:armhf (1.71.0.0ubuntu4) ... Setting up libfftw3-bin (3.3.8-2ubuntu6) ... Setting up fontconfig-config (2.13.1-2ubuntu3) ... Setting up libboost-numpy1.71-dev (1.71.0-6ubuntu9) ... Setting up libboost-math-dev:armhf (1.71.0.0ubuntu4) ... Setting up libxcb-glx0:armhf (1.14-2) ... Setting up libwebpdemux2:armhf (0.6.1-2) ... Setting up libasn1-8-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libedit2:armhf (3.1-20191231-1) ... Setting up libpng-dev:armhf (1.6.37-3) ... Setting up libxcb-keysyms1:armhf (0.4.0-1build1) ... Setting up libxcb-shape0:armhf (1.14-2) ... Setting up libavahi-common3:armhf (0.8-3ubuntu1) ... Setting up libjbig-dev:armhf (2.1-3.1build1) ... Setting up libevent-openssl-2.1-7:armhf (2.1.12-stable-1) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-render-util0:armhf (0.3.9-1build1) ... Setting up python3 (3.8.2-0ubuntu2) ... Setting up libxcb-shm0:armhf (1.14-2) ... Setting up libxcb-icccm4:armhf (0.4.1-1.1) ... Setting up libboost-exception-dev:armhf (1.71.0.0ubuntu4) ... Setting up dssp (3.0.0-3build1) ... Setting up libhcrypto4-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libxcb-util1:armhf (0.4.0-0ubuntu3) ... Setting up libxcb-xkb1:armhf (1.14-2) ... Setting up libxcb-image0:armhf (0.4.0-1build1) ... Setting up libnuma-dev:armhf (2.0.12-1build1) ... Setting up libboost-system1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libnl-route-3-200:armhf (3.4.0-1) ... Setting up libllvm10:armhf (1:10.0.1-6) ... Setting up libxcb-present0:armhf (1.14-2) ... Setting up libboost-random1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up python3-six (1.15.0-1) ... Setting up libboost-coroutine1.71.0:armhf (1.71.0-6ubuntu9) ... Setting up libasan5:armhf (9.3.0-18ubuntu1) ... Setting up libxdmcp-dev:armhf (1:1.1.3-0ubuntu1) ... Setting up libboost-timer1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up libboost-type-erasure1.71.0:armhf (1.71.0-6ubuntu9) ... Setting up libwind0-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libboost-test1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libxcb-xinerama0:armhf (1.14-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up libboost-program-options-dev:armhf (1.71.0.0ubuntu4) ... Setting up libboost-filesystem1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libxcb-sync1:armhf (1.14-2) ... Setting up x11proto-core-dev (2020.1-1) ... Setting up libpython3.8:armhf (3.8.6-1) ... Setting up shared-mime-info (1.15-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up libboost-numpy-dev (1.71.0.0ubuntu4) ... Setting up libxkbcommon-x11-0:armhf (0.10.0-1) ... Setting up libevent-dev (2.1.12-stable-1) ... Setting up python3-kiwisolver (1.2.0-1) ... Setting up libeigen3-dev (3.3.7-3) ... Setting up libboost-regex1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up libboost-serialization1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libboost-serialization-dev:armhf (1.71.0.0ubuntu4) ... Setting up libqt5core5a:armhf (5.14.2+dfsg-6) ... Setting up autoconf (2.69-11.1) ... Setting up libxcb-dri2-0:armhf (1.14-2) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libboost-atomic-dev:armhf (1.71.0.0ubuntu4) ... Setting up x11proto-xext-dev (2020.1-1) ... Setting up libdrm2:armhf (2.4.102-1ubuntu1) ... Setting up dwz (0.13-5) ... Setting up libboost-date-time1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libnl-3-dev:armhf (3.4.0-1) ... Setting up groff-base (1.22.4-5) ... Setting up libqt5dbus5:armhf (5.14.2+dfsg-6) ... Setting up libxcb-randr0:armhf (1.14-2) ... Setting up libboost-stacktrace-dev:armhf (1.71.0.0ubuntu4) ... Setting up cpp-9 (9.3.0-18ubuntu1) ... Setting up libx11-6:armhf (2:1.6.10-3) ... Setting up python3-dateutil (2.8.1-4) ... Setting up libtiff5:armhf (4.1.0+git191117-2build1) ... Setting up libfontconfig1:armhf (2.13.1-2ubuntu3) ... Setting up libjs-jquery (3.5.1+dfsg-4) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up libqt5test5:armhf (5.14.2+dfsg-6) ... Setting up libboost-regex-dev:armhf (1.71.0.0ubuntu4) ... Setting up python3-lib2to3 (3.8.5-1) ... Setting up libwacom2:armhf (1.3-2ubuntu1) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libfftw3-dev:armhf (3.3.8-2ubuntu6) ... Setting up libqt5concurrent5:armhf (5.14.2+dfsg-6) ... Setting up libavahi-client3:armhf (0.8-3ubuntu1) ... Setting up libboost-timer-dev:armhf (1.71.0.0ubuntu4) ... Setting up libboost-filesystem-dev:armhf (1.71.0.0ubuntu4) ... Setting up libboost-iostreams1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libtiffxx5:armhf (4.1.0+git191117-2build1) ... Setting up liblbfgsb0:armhf (3.0+dfsg.3-9) ... Setting up libdrm-amdgpu1:armhf (2.4.102-1ubuntu1) ... Setting up python3-sip (4.19.24+dfsg-1) ... Setting up libboost-graph1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up python3-pkg-resources (49.3.1-2) ... Setting up automake (1:1.16.2-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.8.5-1) ... Setting up dh-python (4.20200925) ... Setting up libxcb-dri3-0:armhf (1.14-2) ... Setting up libboost-graph-dev:armhf (1.71.0.0ubuntu4) ... Setting up libibverbs1:armhf (31.0-1) ... Setting up fontconfig (2.13.1-2ubuntu3) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:armhf (2.4.102-1ubuntu1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libxdamage1:armhf (1:1.1.5-2) ... Setting up libxcb1-dev:armhf (1.14-2) ... Setting up libgbm1:armhf (20.1.8-1) ... Setting up ibverbs-providers:armhf (31.0-1) ... Setting up libdrm-radeon1:armhf (2.4.102-1ubuntu1) ... Setting up openssh-client (1:8.3p1-1) ... Setting up libhx509-5-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libboost-thread1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libboost-system-dev:armhf (1.71.0.0ubuntu4) ... Setting up libboost-context1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libgl1-mesa-dri:armhf (20.1.8-1) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up libboost-wave1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libx11-dev:armhf (2:1.6.10-3) ... Setting up libxext6:armhf (2:1.3.4-0ubuntu1) ... Setting up libboost-random-dev:armhf (1.71.0.0ubuntu4) ... Setting up libboost-wave-dev:armhf (1.71.0.0ubuntu4) ... Setting up libboost-context-dev:armhf (1.71.0.0ubuntu4) ... Setting up libboost-iostreams-dev:armhf (1.71.0.0ubuntu4) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libqt5network5:armhf (5.14.2+dfsg-6) ... Setting up libxxf86vm1:armhf (1:1.1.4-1build1) ... Setting up libinput-bin (1.16.1-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libboost-fiber1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libxnvctrl0:armhf (440.82-0ubuntu1) ... Setting up libboost-test-dev:armhf (1.71.0.0ubuntu4) ... Setting up libqt5sql5:armhf (5.14.2+dfsg-6) ... Setting up libgcc-9-dev:armhf (9.3.0-18ubuntu1) ... Setting up libnl-route-3-dev:armhf (3.4.0-1) ... Setting up libltdl-dev:armhf (2.4.6-14) ... Setting up python3-pil:armhf (7.2.0-1) ... Setting up qtbase5-dev-tools (5.14.2+dfsg-6) ... Setting up libqt5xml5:armhf (5.14.2+dfsg-6) ... Setting up libegl-mesa0:armhf (20.1.8-1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-6) ... Setting up libtiff-dev:armhf (4.1.0+git191117-2build1) ... Setting up libpython3.8-dev:armhf (3.8.6-1) ... Setting up libxfixes3:armhf (1:5.0.3-2) ... Setting up libboost-date-time-dev:armhf (1.71.0.0ubuntu4) ... Setting up python3-numpy (1:1.18.4-1ubuntu1) ... Setting up python3.8-dev (3.8.6-1) ... Setting up libxext-dev:armhf (2:1.3.4-0ubuntu1) ... Setting up libcups2:armhf (2.3.3-3ubuntu1) ... Setting up libboost-type-erasure1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libegl1:armhf (1.3.2-1) ... Setting up libboost-log1.71-dev (1.71.0-6ubuntu9) ... Setting up libboost-coroutine1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up libhwloc-dev:armhf (2.2.0+dfsg-3) ... Setting up libboost-coroutine-dev:armhf (1.71.0.0ubuntu4) ... Setting up libboost-log-dev (1.71.0.0ubuntu4) ... Setting up libboost-thread-dev:armhf (1.71.0.0ubuntu4) ... Setting up libboost-fiber-dev:armhf (1.71.0.0ubuntu4) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libinput10:armhf (1.16.1-1) ... Setting up gcc-9 (9.3.0-18ubuntu1) ... Setting up libboost-locale1.71-dev:armhf (1.71.0-6ubuntu9) ... Setting up python3-matplotlib (3.3.0-3) ... Setting up libglx-mesa0:armhf (20.1.8-1) ... Setting up python3-scipy (1.5.2-2) ... Setting up libpython3-dev:armhf (3.8.2-0ubuntu2) ... Setting up libglx0:armhf (1.3.2-1) ... Setting up po-debconf (1.0.21) ... Setting up libqt5gui5:armhf (5.14.2+dfsg-6) ... Setting up libgfortran-9-dev:armhf (9.3.0-18ubuntu1) ... Setting up libboost-locale-dev:armhf (1.71.0.0ubuntu4) ... Setting up libqt5widgets5:armhf (5.14.2+dfsg-6) ... Setting up libibverbs-dev:armhf (31.0-1) ... Setting up libhwloc-plugins:armhf (2.2.0+dfsg-3) ... Setting up libqt5help5:armhf (5.14.2-3) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libboost-type-erasure-dev:armhf (1.71.0.0ubuntu4) ... Setting up libqt5printsupport5:armhf (5.14.2+dfsg-6) ... Setting up libgl1:armhf (1.3.2-1) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-2) ... Setting up python3-dev (3.8.2-0ubuntu2) ... Setting up libqt5opengl5:armhf (5.14.2+dfsg-6) ... Setting up libglx-dev:armhf (1.3.2-1) ... Setting up libglu1-mesa:armhf (9.0.1-1build1) ... Setting up libgl-dev:armhf (1.3.2-1) ... Setting up libqt5designer5:armhf (5.14.2-3) ... Setting up gfortran-9 (9.3.0-18ubuntu1) ... Setting up libegl-dev:armhf (1.3.2-1) ... Setting up libpmix2:armhf (3.1.5-1) ... Setting up libopenmpi3:armhf (4.0.3-6ubuntu2) ... Setting up libboost-python1.71-dev (1.71.0-6ubuntu9) ... Setting up libldap-2.4-2:armhf (2.4.53+dfsg-1ubuntu1) ... Setting up libboost-python-dev (1.71.0.0ubuntu4) ... Setting up libboost-mpi1.71.0 (1.71.0-6ubuntu9) ... Setting up libglu1-mesa-dev:armhf (9.0.1-1build1) ... Setting up libcurl4:armhf (7.68.0-1ubuntu4) ... Setting up libboost-graph-parallel1.71.0 (1.71.0-6ubuntu9) ... Setting up libgles-dev:armhf (1.3.2-1) ... Setting up openmpi-bin (4.0.3-6ubuntu2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-pyqt5 (5.15.0+dfsg-1) ... Setting up mpi-default-bin (1.13) ... Setting up libglvnd-dev:armhf (1.3.2-1) ... Setting up qtbase5-dev:armhf (5.14.2+dfsg-6) ... Setting up libgl1-mesa-dev:armhf (20.1.8-1) ... Setting up cmake (3.16.3-3ubuntu2) ... Setting up libboost-graph-parallel1.71-dev (1.71.0-6ubuntu9) ... Setting up libopenmpi-dev:armhf (4.0.3-6ubuntu2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode Setting up libboost-mpi-python1.71.0 (1.71.0-6ubuntu9) ... Setting up libqt5opengl5-dev:armhf (5.14.2+dfsg-6) ... Setting up libboost-graph-parallel-dev (1.71.0.0ubuntu4) ... Setting up mpi-default-dev (1.13) ... Setting up libboost-mpi1.71-dev (1.71.0-6ubuntu9) ... Setting up libboost-mpi-python1.71-dev (1.71.0-6ubuntu9) ... Setting up libboost-mpi-python-dev (1.71.0.0ubuntu4) ... Setting up libboost-mpi-dev (1.71.0.0ubuntu4) ... Setting up libboost-all-dev (1.71.0.0ubuntu4) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-openstructure-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... Processing triggers for systemd (246.6-1ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-118-generic arm64 (armv7l) Toolchain package versions: binutils_2.35.1-1ubuntu1 dpkg-dev_1.20.5ubuntu2 g++-10_10.2.0-11ubuntu1 gcc-10_10.2.0-11ubuntu1 gcc-9_9.3.0-18ubuntu1 libc6-dev_2.32-0ubuntu3 libstdc++-10-dev_10.2.0-11ubuntu1 libstdc++6_10.2.0-11ubuntu1 linux-libc-dev_5.8.0-20.21 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu13 base-passwd_3.5.47 bash_5.0-6ubuntu2 binutils_2.35.1-1ubuntu1 binutils-arm-linux-gnueabihf_2.35.1-1ubuntu1 binutils-common_2.35.1-1ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 clustalw_2.1+lgpl-6build1 cmake_3.16.3-3ubuntu2 cmake-data_3.16.3-3ubuntu2 coreutils_8.32-3ubuntu1 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.0-11ubuntu1 cpp-9_9.3.0-18ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1ubuntu1 debianutils_4.11.1 dh-autoreconf_19 dh-python_4.20200925 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3build1 dpkg_1.20.5ubuntu2 dpkg-dev_1.20.5ubuntu2 dssp_3.0.0-3build1 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 file_1:5.38-5 findutils_4.7.0-1ubuntu1 fontconfig_2.13.1-2ubuntu3 fontconfig-config_2.13.1-2ubuntu3 fonts-dejavu-core_2.37-2 fonts-lyx_2.3.5.2-1 g++_4:10.2.0-1ubuntu1 g++-10_10.2.0-11ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.0-11ubuntu1 gcc-10-base_10.2.0-11ubuntu1 gcc-9_9.3.0-18ubuntu1 gcc-9-base_9.3.0-18ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gfortran-9_9.3.0-18ubuntu1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 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xtrans-dev_1.4.0-1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu2 zlib1g-dev_1:1.2.11.dfsg-2ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Jul 31 11:19:47 2020 UTC gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./openstructure_2.0.0-3.dsc dpkg-source: info: extracting openstructure in /<> dpkg-source: info: unpacking openstructure_2.0.0.orig.tar.gz dpkg-source: info: unpacking openstructure_2.0.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python-dist-packages.patch dpkg-source: info: applying fix-quotes-in-ENV.patch dpkg-source: info: applying skip-network-tests.patch dpkg-source: info: applying ost-compare-structures.patch dpkg-source: info: applying ost_config.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20036112 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20036112 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20036112 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package openstructure dpkg-buildpackage: info: source version 2.0.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 dh_clean debian/rules binary-arch dh binary-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DUBUNTU_LAYOUT=ON \ -DPYTHON_LIBRARIES=/usr/lib/arm-linux-gnueabihf/lib$(py3versions --default).so cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DUBUNTU_LAYOUT=ON -DPYTHON_LIBRARIES=/usr/lib/arm-linux-gnueabihf/libpython3.8.so .. -- The CXX compiler identification is GNU 10.2.0 -- The C compiler identification is GNU 10.2.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Found Boost package: python38 -- Boost version: 1.71.0 -- Found the following Boost libraries: -- unit_test_framework -- Boost version: 1.71.0 -- Found the following Boost libraries: -- filesystem -- system -- Boost version: 1.71.0 -- Found the following Boost libraries: -- iostreams -- Boost version: 1.71.0 -- Found the following Boost libraries: -- program_options -- Boost version: 1.71.0 -- Found the following Boost libraries: -- regex -- Boost version: 1.71.0 -- Found the following Boost libraries: -- thread -- Found OpenGL: /usr/lib/arm-linux-gnueabihf/libOpenGL.so -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") -- Found PNG: /usr/lib/arm-linux-gnueabihf/libpng.so (found version "1.6.37") -- Found EIGEN: /usr/include/eigen3 -- Found SQLITE3: /usr/lib/arm-linux-gnueabihf/libsqlite3.so -- Found FFTW: /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Found TIFF: /usr/lib/arm-linux-gnueabihf/libtiff.so (found version "4.1.0") -- Searching for python module PyQt5 for /usr/bin/python3.8 -- Found python module PyQt5 -- Searching for python module PyQt5.sip for /usr/bin/python3.8 -- Searching for python module sip for /usr/bin/python3.8 -- Found python module sip -- OpenStructure will be built with the following options: Install Prefix (-DPREFIX) : /usr RPath in install (-DUSE_RPATH) : OFF Info support (-DENABLE_INFO) : ON Graphical interface (-DENABLE_GUI) : ON OpenGL support (-DENABLE_GFX) : ON Image Processing support (-DENABLE_IMG) : ON Shader support (-DUSE_SHADER) : OFF Numpy support (-DUSE_NUMPY) : OFF SpaceNav Device support (-DENABLE_SPNAV) : OFF OpenMM support (-DENABLE_MM) : OFF OpenMM plugins (-DOPEN_MM_PLUGIN_DIR) : NONE Optimize (-DOPTIMIZE) : OFF Profiling support (-DPROFILE) : OFF Double Precision (-DUSE_DOUBLE_PRECISION) : OFF Compound Lib (-DCOMPOUND_LIB) : NONE TMAlign and TMScore (-DCOMPILE_TMTOOLS) : OFF Static Libraries (-DENABLE_STATIC) : OFF Debian/Ubuntu directory layout (-DUBUNTU_LAYOUT) : ON Hidden object visibility (-DHIDDEN_VISIBILITY) : OFF -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/obj-arm-linux-gnueabihf make[1]: Leaving directory '/<>' dh_auto_build -a cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/base/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/base/src /<>/obj-arm-linux-gnueabihf/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/base/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/base/pymod /<>/obj-arm-linux-gnueabihf/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/bindings/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/conop/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/conop/pymod /<>/obj-arm-linux-gnueabihf/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake --color= Scanning dependencies of target subst___init__.py Scanning dependencies of target create_stage Scanning dependencies of target ost_bindings_pymod make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/build Scanning dependencies of target ost_conop_pymod make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E make_directory /<>/obj-arm-linux-gnueabihf/stage/lib make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/cmake -DINPUT_FILE=/<>/modules/base/pymod/__init__.py.in -DOUT_FILE=__init__.py -DALL_ADDITIONAL_MODULES=,\'gui\',\'gfx\',\'img\',\'info\' -P /<>/cmake_support/substitute.cmake make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./__init__.py make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/conop/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/conop/./__init__.py cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E make_directory /<>/obj-arm-linux-gnueabihf/stage/bin make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./lga.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./lga.py cd /<>/obj-arm-linux-gnueabihf/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/conop/pymod/./cleanup.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/conop/./cleanup.py cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E make_directory /<>/obj-arm-linux-gnueabihf/stage/lib/openstructure/libexec [ 0%] Built target subst___init__.py make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./hbplus.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./hbplus.py make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/db/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/db/pymod /<>/obj-arm-linux-gnueabihf/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E make_directory /<>/obj-arm-linux-gnueabihf/tests cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./msms.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./msms.py Scanning dependencies of target ost_db_pymod [ 0%] Built target ost_conop_pymod make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/db/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/db/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/db/./__init__.py make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/geom/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/geom/pymod /<>/obj-arm-linux-gnueabihf/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./tmtools.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./tmtools.py Scanning dependencies of target ost_geom_pymod make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build [ 0%] Built target create_stage make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/geom/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/geom/./__init__.py make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/gfx/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/gfx/pymod /<>/obj-arm-linux-gnueabihf/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./dssp.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./dssp.py [ 0%] Built target ost_db_pymod make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend Scanning dependencies of target ost_gfx_pymod make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/gui/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/gui/src /<>/obj-arm-linux-gnueabihf/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake --color= make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gfx/./__init__.py cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./clustalw.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./clustalw.py [ 0%] Built target ost_geom_pymod Scanning dependencies of target ost_gui_headers make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/depend make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build cd /<>/obj-arm-linux-gnueabihf/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/pymod/./py_gfx_obj.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gfx/./py_gfx_obj.py cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./utils.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./utils.py make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/gui/share /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/gui/share /<>/obj-arm-linux-gnueabihf/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/tools/tool.hh Scanning dependencies of target gui_images cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./naccess.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./naccess.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_option_group.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/tools/tool_option_group.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/images/logo-small.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/images/logo-small.png cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_options.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/tools/tool_options.hh cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./hhblits.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./hhblits.py [ 0%] Built target ost_gfx_pymod make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/gui/share /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/gui/share /<>/obj-arm-linux-gnueabihf/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_bar.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/tools/tool_bar.hh cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./blast.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./blast.py [ 0%] Built target gui_images make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/gui/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/gui/pymod /<>/obj-arm-linux-gnueabihf/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake --color= Scanning dependencies of target scene_icons make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/add_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/add_icon.png cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/selection_tool.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/tools/selection_tool.hh cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./cadscore.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./cadscore.py Scanning dependencies of target ost_gui_pymod make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/./__init__.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/close_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/close_icon.png cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/measure_tool.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/tools/measure_tool.hh cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./kclust.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./kclust.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/critical_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/critical_icon.png cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./init_context_menu.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/./init_context_menu.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_option.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/tools/tool_option.hh cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./ialign.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./ialign.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/delete_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/delete_icon.png cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./init_menubar.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/./init_menubar.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_manager.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/tools/tool_manager.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/distance_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/distance_icon.png cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./init_spacenav.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/./init_spacenav.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_options_widget.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/tools/tool_options_widget.hh [ 0%] Built target ost_bindings_pymod make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./init_splash.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/./init_splash.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/find_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/find_icon.png make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/gui/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/gui/pymod /<>/obj-arm-linux-gnueabihf/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/manipulator.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/tools/manipulator.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./trajectory_viewer.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/./trajectory_viewer.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/information_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/information_icon.png cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_options_win.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/tools/tool_options_win.hh Scanning dependencies of target ost_gui_dng_pymod make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/dng/__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/dng/__init__.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/map_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/map_icon.png cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./helpwidget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/./helpwidget.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/mouse_event.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/tools/mouse_event.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/dng/termuse.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/dng/termuse.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/menubar_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/menubar_icon.png cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/map_tool.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/tools/map_tool.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./table.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/./table.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/dng/superpositiondialog.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/dng/superpositiondialog.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/rigid_body_manipulator_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./gosty_startup.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/./gosty_startup.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/align_properties_painter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/dng/init.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/dng/init.py make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/selection_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/selection_icon.png cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/base_row.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/base_row.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/dng/menu.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/dng/menu.py [ 0%] Built target ost_gui_pymod cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/show_sidebar_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/show_sidebar_icon.png make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/gui/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/gui/pymod /<>/obj-arm-linux-gnueabihf/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/background_painter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/background_painter.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/site_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/site_icon.png Scanning dependencies of target ost_gui_scene_pymod make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/__init__.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/conservation_painter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/conservation_painter.hh [ 0%] Built target ost_gui_dng_pymod make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/img/base/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/split_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/split_icon.png cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/color_options_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/color_options_widget.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/painter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/painter.hh Scanning dependencies of target ost_img_pymod cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/warning_icon.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/warning_icon.png make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/img/./__init__.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/color_select_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/color_select_widget.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/secstr_row.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/secstr_row.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/share && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/refresh.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/gui/icons/refresh.png make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/combo_options_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/combo_options_widget.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 0%] Built target ost_img_pymod make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/img/alg/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/img/alg/pymod /<>/obj-arm-linux-gnueabihf/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/cpk_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/cpk_widget.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/seq_selection_painter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh [ 0%] Built target scene_icons make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/info/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/info/pymod /<>/obj-arm-linux-gnueabihf/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/custom_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/custom_widget.py Scanning dependencies of target ost_img_alg_pymod make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/seq_text_painter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/img/alg/./__init__.py Scanning dependencies of target ost_info_pymod cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/gradient_editor_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/gradient_editor_widget.py make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/info/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/info/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/info/./__init__.py make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_delegate.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/gradient_info_handler.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/gradient_info_handler.py [ 0%] Built target ost_img_alg_pymod make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_model.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/sequence_model.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/io/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/io/pymod /<>/obj-arm-linux-gnueabihf/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/gradient_list_model.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/gradient_list_model.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_row.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/sequence_row.hh [ 0%] Built target ost_info_pymod Scanning dependencies of target ost_io_pymod make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/gradient_preset_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/gradient_preset_widget.py make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/mol/base/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/io/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/io/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/io/./__init__.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_search_bar.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh Scanning dependencies of target ost_mol_pymod cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/hsc_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/hsc_widget.py make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/mol/./__init__.py cd /<>/obj-arm-linux-gnueabihf/modules/io/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/io/pymod/./remote.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/io/./remote.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_table_view.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/immutable_gradient_info_handler.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/immutable_gradient_info_handler.py make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/io/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/io/pymod/./repository.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/io/./repository.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_viewer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/immutable_preset_info_handler.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/immutable_preset_info_handler.py [ 0%] Built target ost_mol_pymod make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/tick_painter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/tick_painter.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/mol/alg/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/mol/alg/pymod /<>/obj-arm-linux-gnueabihf/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/init_inspector.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/init_inspector.py [ 0%] Built target ost_io_pymod cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/title_row.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/title_row.hh Scanning dependencies of target ost_mol_alg_pymod make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/seq/base/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/seq/base/pymod /<>/obj-arm-linux-gnueabihf/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/mol/alg/./__init__.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/inspector_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/inspector_widget.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/alignment_view_object.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh Scanning dependencies of target ost_seq_pymod make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/seq/./__init__.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/map_level_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/map_level_widget.py cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./views.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/mol/alg/./views.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/base_view_object.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/base_view_object.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/preset.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/preset.py cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./superpose.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/mol/alg/./superpose.py make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_view_object.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./qsscoring.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/mol/alg/./qsscoring.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/remote.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/remote.py [ 0%] Built target ost_seq_pymod make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/seq/alg/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/seq/alg/pymod /<>/obj-arm-linux-gnueabihf/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/main_thread_runner.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/main_thread_runner.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/preset_editor_list_model.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/preset_editor_list_model.py cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./trajectory_analysis.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/mol/alg/./trajectory_analysis.py Scanning dependencies of target ost_seq_alg_pymod make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/pymod/./__init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/seq/alg/./__init__.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/output_redirector.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/output_redirector.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/preset_editor_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/preset_editor_widget.py cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./structure_analysis.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/mol/alg/./structure_analysis.py cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/pymod/./mat.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/seq/alg/./mat.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/completer_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/completer_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/preset_info_handler.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/preset_info_handler.py cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./helix_kinks.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/mol/alg/./helix_kinks.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/dir_model.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/dir_model.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/pymod/./renumber.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/seq/alg/./renumber.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/preset_list_model.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/preset_list_model.py cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./hbond.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/mol/alg/./hbond.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/gutter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/gutter.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/preset_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/preset_widget.py [ 0%] Built target ost_seq_alg_pymod cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/path_completer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/path_completer.hh make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/scripts /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/scripts /<>/obj-arm-linux-gnueabihf/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/render_mode_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/render_mode_widget.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_context_parser.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/python_context_parser.hh [ 0%] Built target ost_mol_alg_pymod make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend Scanning dependencies of target subst_ost_startup.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/render_op.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/render_op.py make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT_FILE=/<>/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Debug -DPYTHON_BINARY=/usr/bin/python3.8 -DPYTHON_VERSION=3.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -P /<>/cmake_support/substitute.cmake cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/scripts /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/scripts /<>/obj-arm-linux-gnueabihf/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_completer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/python_completer.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/render_options_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/render_options_widget.py Scanning dependencies of target subst_dng make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT_FILE=/<>/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Debug -DPYTHON_BINARY=/usr/bin/python3.8 -DPYTHON_VERSION=3.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -P /<>/cmake_support/substitute.cmake cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_shell.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/python_shell.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/scene_observer_impl.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/scene_observer_impl.py [ 0%] Built target subst_ost_startup.py make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/scripts /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/scripts /<>/obj-arm-linux-gnueabihf/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_shell_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/python_shell_fw.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/scene_selection_helper.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/scene_selection_helper.py Scanning dependencies of target subst_ost [ 0%] Built target subst_dng cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_shell_widget.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/python_shell_widget.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/simple_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/simple_widget.py make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT_FILE=/<>/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Debug -DPYTHON_BINARY=/usr/bin/python3.8 -DPYTHON_VERSION=3.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -P /<>/cmake_support/substitute.cmake make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/scripts /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/scripts /<>/obj-arm-linux-gnueabihf/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_tokenizer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/python_tokenizer.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/sline_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/sline_widget.py make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' Scanning dependencies of target subst_ost_config make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT_FILE=/<>/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Debug -DPYTHON_BINARY=/usr/bin/python3.8 -DPYTHON_VERSION=3.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -P /<>/cmake_support/substitute.cmake cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/toolbar_options_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/toolbar_options_widget.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_syntax_highlighter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh [ 0%] Built target subst_ost make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/actions /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/actions /<>/obj-arm-linux-gnueabihf/actions/CMakeFiles/actions.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/text_logger.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/text_logger.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/trace_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/trace_widget.py [ 0%] Built target subst_ost_config Scanning dependencies of target actions make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/geom/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/geom/src /<>/obj-arm-linux-gnueabihf/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/actions && /usr/bin/cmake -E copy_if_different /<>/actions/ost-compare-structures /<>/obj-arm-linux-gnueabihf/stage/lib/openstructure/libexec/ost-compare-structures cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/tube_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/tube_widget.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_interpreter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/python_interpreter.hh Scanning dependencies of target ost_geom_headers make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/uniform_color_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/uniform_color_widget.py make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_interpreter_worker.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/python_interpreter_worker.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/export_helper/vector.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/export_helper/vector.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_shell_text_document_layout.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/visibility_op.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/visibility_op.py [ 0%] Built target actions make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./def.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./def.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/config /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/config /<>/obj-arm-linux-gnueabihf/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/line_trace_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/line_trace_widget.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/shell_history.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/shell_history.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./exc.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./exc.hh Scanning dependencies of target ost_config_headers make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/config && /usr/bin/cmake -E copy_if_different /<>/modules/config/./base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./base.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./geom.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./geom.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/state_machine.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/state_machine.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/wireframe_widget.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/wireframe_widget.py cd /<>/obj-arm-linux-gnueabihf/modules/config && /usr/bin/cmake -E copy_if_different /<>/modules/config/./config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./config.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/query_editor.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/gui/scene/query_editor.py cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./mat.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./mat.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/state.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/state.hh cd /<>/obj-arm-linux-gnueabihf/modules/config && /usr/bin/cmake -E copy_if_different /<>/modules/config/./dllexport.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./dllexport.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./mat2.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./mat2.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/transition.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/transition.hh cd /<>/obj-arm-linux-gnueabihf/modules/config && /usr/bin/cmake -E copy_if_different /<>/modules/config/./version.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./version.hh [ 0%] Built target ost_gui_scene_pymod cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/transition_guard.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/python_shell/transition_guard.hh make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/base/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/base/src /<>/obj-arm-linux-gnueabihf/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./mat3.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./mat3.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/button_bar.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/panels/button_bar.hh Scanning dependencies of target ost_base_headers make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./mat4.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./mat4.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/export_helper/generic_property_def.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/export_helper/generic_property_def.hh [ 0%] Built target ost_config_headers make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/base/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/base/pymod /<>/obj-arm-linux-gnueabihf/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/drop_box.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/panels/drop_box.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./vec.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/export_helper/pair_to_tuple_conv.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/export_helper/pair_to_tuple_conv.hh Scanning dependencies of target ost_base_pymod cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/panel_bar.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/panels/panel_bar.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/base/pymod/./settings.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/./settings.py cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec2.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./vec2.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/export_helper/vec_to_list_conv.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/export_helper/vec_to_list_conv.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/panel_manager.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/panels/panel_manager.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/base/pymod/./stutil.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/./stutil.py cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/test_utils/compare_files.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/test_utils/compare_files.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec3.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./vec3.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/bottom_bar.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/panels/bottom_bar.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/base/pymod/./table.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/./table.py cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./generic_property.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./generic_property.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec4.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./vec4.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/button_box.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/panels/button_box.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/base/pymod/./table_selector.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/./table_selector.py cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vecmat_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./vecmat_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./integrity_error.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./integrity_error.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/base/pymod/./xmlrunner.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/./xmlrunner.py cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/event_button.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/panels/event_button.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vecmat2_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./vecmat2_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./invalid_handle.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./invalid_handle.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/panel_widget_container.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/panels/panel_widget_container.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/cmake -E copy_if_different /<>/modules/base/pymod/./testutils.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/./testutils.py cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./ptr_observer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./ptr_observer.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vecmat3_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./vecmat3_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/__init__.py cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./log.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./log.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/panel_bar_widget_holder.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/panels/panel_bar_widget_holder.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vecmat4_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./vecmat4_op.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/side_bar.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/panels/side_bar.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./log_sink.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./log_sink.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./circular_iterator.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./circular_iterator.hh [ 0%] Built target ost_base_pymod make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/seq/base/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/seq/base/src /<>/obj-arm-linux-gnueabihf/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./constants.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./constants.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/splitter_panel_bar.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/panels/splitter_panel_bar.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./profile.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./profile.hh Scanning dependencies of target ost_seq_headers cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./composite.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/tabbed_panel_bar.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/panels/tabbed_panel_bar.hh make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/impl/sequence_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./dyn_cast.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./dyn_cast.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/context_menu.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/scene_win/context_menu.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite2.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./composite2.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_impl_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/impl/sequence_impl_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./stdint.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./stdint.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/current_selection_node.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/scene_win/current_selection_node.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite3.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./composite3.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_list_impl_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/impl/sequence_list_impl_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./stdint_msc.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./stdint_msc.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./composite_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/custom_part_node.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/scene_win/custom_part_node.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./range.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./range.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_list_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/impl/sequence_list_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite2_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./composite2_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/entity_node.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/scene_win/entity_node.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./module_config.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_list_iterator.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/impl/sequence_list_iterator.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite3_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./composite3_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/entity_part_node.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/scene_win/entity_part_node.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./units.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./units.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./sequence_list.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/./sequence_list.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./message.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./message.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/gfx_scene_node.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/scene_win/gfx_scene_node.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./aligned_cuboid.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./aligned_cuboid.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./sequence_handle.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/./sequence_handle.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/label_node.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/scene_win/label_node.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec_mat_predicates.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./vec_mat_predicates.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./platform.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./platform.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./alignment_handle.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/./alignment_handle.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/root_node.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/scene_win/root_node.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./quat.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./quat.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./string_ref.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./string_ref.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/./module_config.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/render_mode_node.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/scene_win/render_mode_node.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./transform.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./transform.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./pod_vector.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./pod_vector.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./sequence_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/./sequence_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/render_modes_node.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/scene_win/render_modes_node.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./point_cloud.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./point_cloud.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./fixed_string.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./fixed_string.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./aligned_region.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/./aligned_region.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/scene_node.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/scene_win/scene_node.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/geom/./module_config.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./aligned_column.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/./aligned_column.hh cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./tri_matrix.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./tri_matrix.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/scene_win.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/scene_win/scene_win.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./aligned_column_iterator.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/./aligned_column_iterator.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./boost_filesystem_helper.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/./boost_filesystem_helper.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/scene_win_model.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/scene_win/scene_win_model.hh [ 0%] Built target ost_geom_headers make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./invalid_sequence.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/./invalid_sequence.hh make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/messages/message_widget.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/messages/message_widget.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/info/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/info/src /<>/obj-arm-linux-gnueabihf/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake --color= [ 0%] Built target ost_base_headers make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./views_from_sequences.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/./views_from_sequences.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/mol/base/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/mol/base/src /<>/obj-arm-linux-gnueabihf/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake --color= Scanning dependencies of target ost_info_headers cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/messages/message_box_widget.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/messages/message_box_widget.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./info.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./profile_handle.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/./profile_handle.hh Scanning dependencies of target ost_mol_headers cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/messages/log_reader.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/messages/log_reader.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_error.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./info_error.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/pointer_iterator.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/pointer_iterator.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/argand.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/argand.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/atom_group.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/atom_group.hh cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./info_impl.hh [ 0%] Built target ost_seq_headers make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/data_viewer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/data_viewer.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/bindings/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/bindings/src /<>/obj-arm-linux-gnueabihf/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/atom_prop.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/atom_prop.hh cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_impl_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./info_impl_fw.hh Scanning dependencies of target ost_bindings_headers cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/data_viewer_panel.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/data_viewer_panel.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/atom_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/atom_impl.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/bindings/src && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/src/./wrap_tmalign.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/bindings/./wrap_tmalign.hh cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_handle.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./info_handle.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/atom_impl_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/atom_impl_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/data_viewer_panel_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_group.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./info_group.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/chain_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/chain_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/draw_overlay.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/draw_overlay.hh [ 0%] Built target ost_bindings_headers make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/seq/alg/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/drawing_functions.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/drawing_functions.hh cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_item.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./info_item.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/chain_impl_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/chain_impl_fw.hh Scanning dependencies of target ost_seq_alg_headers make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./alignment_opts.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./alignment_opts.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/fft_panel.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/fft_panel.hh cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./info_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/connector_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/connector_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./clip_alignment.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./clip_alignment.hh cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./module_config.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/info_panel.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/info_panel.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/connector_impl_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/connector_impl_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./conservation.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./conservation.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/img2qt.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/img2qt.hh cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_path.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./info_path.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/dihedral.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/dihedral.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./contact_prediction_score.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./contact_prediction_score.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/mask_overlay.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/mask_overlay.hh cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_set.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./info_set.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/entity_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/entity_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./contact_weight_matrix.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./contact_weight_matrix.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/null_overlay.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/null_overlay.hh cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_visitor.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./info_visitor.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/entity_impl_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/entity_impl_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./distance_map.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./distance_map.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/overlay.hh cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_verbose_visitor.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./info_verbose_visitor.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./entropy.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./entropy.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/fragment_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/fragment_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/overlay_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./item_type.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./item_type.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_base_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/overlay_base_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/fragment_impl_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/fragment_impl_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./global_align.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./global_align.hh cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./geom_info_conversion.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./geom_info_conversion.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./ins_del.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./ins_del.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_manager.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/overlay_manager.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/query_ast.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/query_ast.hh cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./item_type_cast.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/info/./item_type_cast.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/query_ast_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/query_ast_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./local_align.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./local_align.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_manager_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./merge_pairwise_alignments.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/query_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/query_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_manager_gui.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh [ 0%] Built target ost_info_headers make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/conop/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/conop/src /<>/obj-arm-linux-gnueabihf/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./module_config.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/query_impl_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/query_impl_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_manager_observer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh Scanning dependencies of target ost_conop_headers make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./conop.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/conop/./conop.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./pair_subst_weight_matrix.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/residue_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/residue_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/pointlist_overlay.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/pointlist_overlay.hh cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./processor.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/conop/./processor.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./semiglobal_align.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./semiglobal_align.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/residue_impl_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/residue_impl_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/pointlist_overlay_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/surface_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/surface_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./amino_acids.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/conop/./amino_acids.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./sequence_identity.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./sequence_identity.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/strategies.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/strategies.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./sequence_similarity.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./sequence_similarity.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/surface_impl_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/surface_impl_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./diag.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/conop/./diag.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/strategies_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/strategies_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./subst_weight_matrix.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./subst_weight_matrix.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/torsion_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/torsion_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./model_check.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/conop/./model_check.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/viewer_normalizer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/data_viewer/viewer_normalizer.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/torsion_impl_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/impl/torsion_impl_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./heuristic.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/conop/./heuristic.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./variance_map.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./variance_map.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./file_browser.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./file_browser.hh cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./compound.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/conop/./compound.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./atom_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./atom_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./file_type_dialog.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./file_type_dialog.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./atom_handle.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./atom_handle.hh cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./compound_lib.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/conop/./compound_lib.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./file_viewer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./file_viewer.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./atom_view.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./atom_view.hh cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/conop/./module_config.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./gl_canvas.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./gl_canvas.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./bond_handle.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./bond_handle.hh cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./rule_based.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/conop/./rule_based.hh [ 0%] Built target ost_seq_alg_headers cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./gl_win.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./gl_win.hh make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/db/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/db/src /<>/obj-arm-linux-gnueabihf/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./minimal_compound_lib.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/conop/./minimal_compound_lib.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./bond_table.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./bond_table.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./scene_menu.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./scene_menu.hh Scanning dependencies of target ost_db_headers make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/db/src && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./sqlite_wrap.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/db/./sqlite_wrap.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chain_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./chain_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./compound_lib_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/conop/./compound_lib_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./gosty_app.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./gosty_app.hh cd /<>/obj-arm-linux-gnueabihf/modules/db/src && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./sqlite_conv.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/db/./sqlite_conv.hh cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./ring_finder.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/conop/./ring_finder.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chain_handle.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./chain_handle.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./admin.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./admin.hh cd /<>/obj-arm-linux-gnueabihf/modules/db/src && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/db/./module_config.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chain_view.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./chain_view.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./module_config.hh cd /<>/obj-arm-linux-gnueabihf/modules/db/src && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./linear_indexer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/db/./linear_indexer.hh [ 0%] Built target ost_conop_headers cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chain_type.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./chain_type.hh make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/img/base/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/img/base/src /<>/obj-arm-linux-gnueabihf/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./main.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./main.hh cd /<>/obj-arm-linux-gnueabihf/modules/db/src && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./paged_array.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/db/./paged_array.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chem_class.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./chem_class.hh Scanning dependencies of target ost_img_headers cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./main_area.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./main_area.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/raster_image/raster_image.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/raster_image/raster_image.hh cd /<>/obj-arm-linux-gnueabihf/modules/db/src && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./binary_container.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/db/./binary_container.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chem_type.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./chem_type.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./perspective.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./perspective.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/dispatch.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/dispatch.hh cd /<>/obj-arm-linux-gnueabihf/modules/db/src && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./extract_data_helper.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/db/./extract_data_helper.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./coord_group.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./coord_group.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./scene_selection.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./scene_selection.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./coord_source.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./coord_source.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/image_state.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./main_window.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./main_window.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./in_mem_coord_source.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./in_mem_coord_source.hh [ 0%] Built target ost_db_headers cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/image_state_fw.hh make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/img/alg/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/img/alg/src /<>/obj-arm-linux-gnueabihf/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./coord_frame.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./coord_frame.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./dock_widget.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./dock_widget.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/image_state_base.hh Scanning dependencies of target ost_img_alg_headers make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./anisotropic.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./anisotropic.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./editor_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./editor_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./dock_widget.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./dock_widget.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_base_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/image_state_base_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./auto_correlate.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./auto_correlate.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./editor_type_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./editor_type_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./thin_splitter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./thin_splitter.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_def.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/image_state_def.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./clear.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./clear.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./mol.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./mol.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_factory.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/image_state_factory.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./widget.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./clip_min_max.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./clip_min_max.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_frequency_domain.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/image_state_frequency_domain.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./entity_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget_geom_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./widget_geom_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./entity_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./conjugate.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./conjugate.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget_pool.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./widget_pool.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_handle.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./entity_handle.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/image_state_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./convolute.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./convolute.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget_registry.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./widget_registry.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_observer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./entity_observer.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_spatial_domain.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/image_state_spatial_domain.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./correlate.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./correlate.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget_state_saver.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./widget_state_saver.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_observer_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./entity_observer_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_visitor.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/image_state_visitor.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./cross_correlate.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./cross_correlate.hh cd /<>/obj-arm-linux-gnueabihf/modules/gui/src && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./file_loader.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gui/./file_loader.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_property_mapper.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./entity_property_mapper.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_algorithm.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/image_state_algorithm.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./density_slice.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./density_slice.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_view.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./entity_view.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_visitor_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/image_state_visitor_fw.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./dft.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./dft.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_visitor.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./entity_visitor.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/index.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/index.hh [ 0%] Built target ost_gui_headers make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/io/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/io/src /<>/obj-arm-linux-gnueabihf/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fft.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./fft.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_visitor_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./entity_visitor_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/type_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/type_fw.hh Scanning dependencies of target ost_io_headers make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/chemdict_parser.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/chemdict_parser.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fftw_helper.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./fftw_helper.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./handle_type_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./handle_type_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/value_holder.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/image_state/value_holder.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fill.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./fill.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/star_parser.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/star_parser.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./ics_editor.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./ics_editor.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./algorithm.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./algorithm.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./filter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./filter.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/mmcif_reader.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/mmcif_reader.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./not_connected_error.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./not_connected_error.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./circle_mask.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./circle_mask.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fourier_filters.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./fourier_filters.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/mmcif_info.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/mmcif_info.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./composite_mask.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./composite_mask.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./property_id.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./property_id.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./gaussian_gradient_magnitude.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/io_profile.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/io_profile.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./query.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./query.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/dcd_io.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/dcd_io.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./data_algorithm.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./data_algorithm.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./gaussian.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./gaussian.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./gaussian_laplacian.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./gaussian_laplacian.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./query_error.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./query_error.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_crd_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/entity_io_crd_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./data_observer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./data_observer.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./query_state.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./query_state.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./highest_peak_search_3d.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./highest_peak_search_3d.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_pqr_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/entity_io_pqr_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./data_types.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./data_types.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_mae_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/entity_io_mae_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./residue_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./residue_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./histogram.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./histogram.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./data.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./data.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./residue_handle.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./residue_handle.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_mmcif_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/entity_io_mmcif_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./line_iterator.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./line_iterator.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./debug.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./debug.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/entity_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./local_sigma_threshold.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./local_sigma_threshold.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./residue_prop.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./residue_prop.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./dllexport.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./dllexport.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/pdb_reader.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/pdb_reader.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./residue_view.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./residue_view.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./mask_image.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./mask_image.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./extent_iterator.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./extent_iterator.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_pdb_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/entity_io_pdb_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./negate.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./negate.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./sec_structure.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./sec_structure.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./extent_mask.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./extent_mask.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/pdb_writer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/pdb_writer.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./normalizer_factory.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./normalizer_factory.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./spatial_organizer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./spatial_organizer.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./extent.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./extent.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_sdf_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/entity_io_sdf_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./norm.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./norm.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./surface.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./surface.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_factory.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./image_factory.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/sdf_reader.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/sdf_reader.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./normalizer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./normalizer.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./image_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./surface_builder.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./surface_builder.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/sdf_writer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/sdf_writer.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./norm_linear.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./norm_linear.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/save_entity.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/save_entity.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_handle_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./image_handle_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./builder.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./builder.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/load_entity.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/load_entity.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./norm_log.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./norm_log.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_handle.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./image_handle.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./surface_handle.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./surface_handle.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/surface_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/surface_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./norm_od.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./norm_od.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./image_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./surface_prop.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./surface_prop.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/load_surface.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/load_surface.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_list.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./image_list.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./power_spectrum.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./power_spectrum.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./torsion_handle.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./torsion_handle.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_state_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./image_state_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/surface_io_msms_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/surface_io_msms_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./randomize.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./randomize.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./transfer_connectivity.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./transfer_connectivity.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/pdb_str.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/pdb_str.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_state.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./image_state.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./smooth_mask_image.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./smooth_mask_image.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./query_view_wrapper.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./query_view_wrapper.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./image.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/stereochemical_params_reader.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/mol/stereochemical_params_reader.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./stat.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./stat.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./view_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./view_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./inverted_mask.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./inverted_mask.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/load_map.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/load_map.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./stat_accumulator.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./stat_accumulator.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./view_type_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./view_type_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./map.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./map.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_df3_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/map_io_df3_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./stat_min_max.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./stat_min_max.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./view_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./view_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_base_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./mask_base_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/image_format.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/image_format.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./xcs_editor.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./xcs_editor.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./threshold.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./threshold.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./mask_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_dx_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/map_io_dx_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./bounding_box.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./bounding_box.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transcendentals.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./transcendentals.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./mask_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_spi_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/map_io_spi_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./transform.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./transform.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_visitor.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./mask_visitor.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_situs_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/map_io_situs_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transform.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./transform.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/./module_config.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./mask.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/map_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transform_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./transform_fw.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./module_config.hh [ 0%] Built target ost_mol_headers cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_mrc_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/map_io_mrc_handler.hh make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./alg_transform.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./alg_transform.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/mol/alg/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./normalizer_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./normalizer_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./alg_mirror.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./alg_mirror.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_dat_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/map_io_dat_handler.hh Scanning dependencies of target ost_mol_alg_headers make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./svd_superpose.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./svd_superpose.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./normalizer_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./normalizer_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_ipl_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/map_io_ipl_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./alg_shift.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./alg_shift.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./module_config.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./null_data.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./null_data.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_jpk_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/map_io_jpk_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./discrete_shrink.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./discrete_shrink.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./sec_structure_segments.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./sec_structure_segments.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./observable.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./observable.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_nanoscope_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/map_io_nanoscope_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transformation_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./transformation_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./local_dist_diff_test.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./local_dist_diff_test.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_png_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/map_io_png_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./paste_impl.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./paste_impl.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transformations.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./transformations.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./distance_test_common.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./distance_test_common.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_dm3_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/map_io_dm3_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./peak.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./peak.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fractional_shift.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./fractional_shift.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./distance_rmsd_test.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./distance_rmsd_test.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./phase.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./phase.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_tiff_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/map_io_tiff_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./module_config.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./physical_units.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./physical_units.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./superpose_frames.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./superpose_frames.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/tiff_util.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/tiff_util.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./polar.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./polar.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./pixel_sampling.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./pixel_sampling.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./filter_clashes.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./filter_clashes.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/jpk_util.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/img/jpk_util.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./line_average.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./line_average.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./point_list.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./point_list.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./construct_cbeta.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./construct_cbeta.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/sequence_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/seq/sequence_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./rscrosscorr.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/alg/./rscrosscorr.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./clash_score.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./clash_score.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./point.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./point.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/fasta_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/seq/fasta_io_handler.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./trajectory_analysis.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./trajectory_analysis.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./polygon_mask.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./polygon_mask.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/pir_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/seq/pir_io_handler.hh [ 0%] Built target ost_img_alg_headers make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/gfx/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/gfx/src /<>/obj-arm-linux-gnueabihf/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./structure_analysis.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./structure_analysis.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/promod_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/seq/promod_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./progress.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./progress.hh Scanning dependencies of target ost_gfx_headers make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./consistency_checks.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./consistency_checks.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_iso_gen.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/map_iso_gen.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./size.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./size.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/profile_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/seq/profile_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./spherical_mask.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./spherical_mask.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./pdbize.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./pdbize.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_iso_gen_s.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/hhm_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/seq/hhm_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./util.cc /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./util.cc cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./adjacency_bitmap.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./adjacency_bitmap.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_iso_gen_s.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/pssm_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/seq/pssm_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./consistency_checks.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./consistency_checks.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./util.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./util.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/clustal_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/seq/clustal_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_iso_spec.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/map_iso_spec.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./contact_overlap.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./contact_overlap.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./value_util.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./value_util.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/load.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/seq/load.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_octree.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/map_octree.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./domain_find.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./domain_find.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/save.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/seq/save.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./vecmat.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./vecmat.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/octree_isocont.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/octree_isocont.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./similarity_matrix.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./similarity_matrix.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/cartoon_renderer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/cartoon_renderer.hh cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_info_convert.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/img/./mask_info_convert.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./binary_data_sink.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./binary_data_sink.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./accessibility.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./accessibility.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/custom_renderer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/custom_renderer.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./io_manager.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./io_manager.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/cpk_renderer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/cpk_renderer.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./sec_struct.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./sec_struct.hh [ 0%] Built target ost_img_headers make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/config /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/config /<>/obj-arm-linux-gnueabihf/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./binary_data_source.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./binary_data_source.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/debug_renderer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/debug_renderer.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./nonstandard.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./nonstandard.hh Scanning dependencies of target ost_config cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./module_config.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'. make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/simple_renderer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/simple_renderer.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./molck.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./molck.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./container_serialization.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./container_serialization.hh [ 0%] Built target ost_config cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/sline_renderer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/sline_renderer.hh make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./find_membrane.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./find_membrane.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/geom/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/geom/src /<>/obj-arm-linux-gnueabihf/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./swap_util.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./swap_util.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/trace_renderer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/trace_renderer.hh cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./entity_to_density.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/mol/alg/./entity_to_density.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./io_utils.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./io_utils.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/line_trace_renderer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/line_trace_renderer.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./io_exception.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./io_exception.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/backbone_trace.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/backbone_trace.hh [ 0%] Built target ost_mol_alg_headers cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./convert.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./convert.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/entity_detail.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/entity_detail.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./converting_streams.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./converting_streams.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/entity_renderer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/entity_renderer.hh Scanning dependencies of target ost_geom make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./formatted_line.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./formatted_line.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/trace_renderer_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/trace_renderer_base.hh make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/connect_renderer_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/connect_renderer_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/chemdict_parser.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./chemdict_parser.hh cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/mat2.cc.o -c /<>/modules/geom/src/mat2.cc cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/mat3.cc.o -c /<>/modules/geom/src/mat3.cc cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/star_parser.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./star_parser.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/mapped_property.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/mapped_property.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/entity_renderer_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/entity_renderer_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/mmcif_reader.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./mmcif_reader.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/tabulated_trig.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/tabulated_trig.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/mmcif_info.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./mmcif_info.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/fast_spheres.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/impl/fast_spheres.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/io_profile.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./io_profile.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/dcd_io.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./dcd_io.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/render_options.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/render_options/render_options.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/line_render_options.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/render_options/line_render_options.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_crd_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./entity_io_crd_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/custom_render_options.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/render_options/custom_render_options.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_pqr_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./entity_io_pqr_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/cpk_render_options.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/render_options/cpk_render_options.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_mae_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./entity_io_mae_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/simple_render_options.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/render_options/simple_render_options.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_mmcif_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./entity_io_mmcif_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/sline_render_options.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/render_options/sline_render_options.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./entity_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/line_trace_render_options.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/render_options/line_trace_render_options.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/pdb_reader.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./pdb_reader.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/cartoon_render_options.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/render_options/cartoon_render_options.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_pdb_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./entity_io_pdb_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/trace_render_options.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/render_options/trace_render_options.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/pdb_writer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./pdb_writer.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/color_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/color_ops/color_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_sdf_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./entity_io_sdf_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/by_element_color_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/color_ops/by_element_color_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/sdf_reader.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./sdf_reader.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/by_chain_color_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/color_ops/by_chain_color_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/sdf_writer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./sdf_writer.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/save_entity.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./save_entity.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/uniform_color_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/color_ops/uniform_color_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/gradient_color_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/color_ops/gradient_color_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/load_entity.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./load_entity.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/surface_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./surface_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/entity_view_color_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/color_ops/entity_view_color_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/basic_gradient_color_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/load_surface.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./load_surface.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/surface_io_msms_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./surface_io_msms_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/gradient_level_color_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/pdb_str.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./pdb_str.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/map_handle_color_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/color_ops/map_handle_color_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./render_pass.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./render_pass.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/stereochemical_params_reader.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./stereochemical_params_reader.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./bitmap_io.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./bitmap_io.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/sequence_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./sequence_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./collada_exporter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./collada_exporter.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/fasta_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./fasta_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/pir_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./pir_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./color.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./color.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/promod_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./promod_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./entity.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./entity.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/profile_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./profile_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./entity_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./entity_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/hhm_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./hhm_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gl_helper.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gl_helper.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/pssm_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./pssm_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/clustal_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./clustal_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gfx.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/load.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./load.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gfx_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/save.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./save.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_node.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gfx_node.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/load_map.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./load_map.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_node_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gfx_node_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_df3_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./map_io_df3_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_node_visitor.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gfx_node_visitor.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/image_format.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./image_format.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_object_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gfx_object_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_object.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gfx_object.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_dx_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./map_io_dx_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_spi_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./map_io_spi_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_object_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gfx_object_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_situs_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./map_io_situs_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_prim.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gfx_prim.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./map_io_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./symmetry_node.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./symmetry_node.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_mrc_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./map_io_mrc_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_test_object.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gfx_test_object.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_dat_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./map_io_dat_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./glwin_base.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./glwin_base.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_ipl_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./map_io_ipl_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./input.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./input.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_jpk_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./map_io_jpk_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./prim_list.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./prim_list.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_nanoscope_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./map_io_nanoscope_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_png_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./map_io_png_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./scene.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./scene.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_dm3_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./map_io_dm3_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./selection.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./selection.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./surface.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./surface.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_tiff_handler.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./map_io_tiff_handler.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./texture.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./texture.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/tiff_util.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./tiff_util.hh cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/jpk_util.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/io/./jpk_util.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./vertex_array.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./vertex_array.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./vertex_array_helper.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./vertex_array_helper.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 0%] Built target ost_io_headers cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./scene_observer.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./scene_observer.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/mat4.cc.o -c /<>/modules/geom/src/mat4.cc cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gl_include.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gl_include.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./glext_include.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./glext_include.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./render_mode.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./render_mode.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./material.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./material.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gradient.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gradient.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gradient_manager.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gradient_manager.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./module_config.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./module_config.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./primitives.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./primitives.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./povray_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./povray_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./povray.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./povray.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./exporter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./exporter.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./exporter_fw.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./exporter_fw.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gost_exporter.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./gost_exporter.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./color_ops/map_handle_color_op.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./map_handle_color_op.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./map_iso.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./map_iso.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./map_slab.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./map_slab.hh cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./map_iso_prop.hh /<>/obj-arm-linux-gnueabihf/stage/include/ost/gfx/./map_iso_prop.hh make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 0%] Built target ost_gfx_headers [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vec3.cc.o -c /<>/modules/geom/src/vec3.cc [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /<>/modules/geom/src/vecmat2_op.cc [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -c /<>/modules/geom/src/vecmat3_op.cc [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -c /<>/modules/geom/src/vecmat4_op.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite2.cc.o -c /<>/modules/geom/src/composite2.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite3.cc.o -c /<>/modules/geom/src/composite3.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c /<>/modules/geom/src/composite2_op.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite3_op.cc.o -c /<>/modules/geom/src/composite3_op.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/quat.cc.o -c /<>/modules/geom/src/quat.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/transform.cc.o -c /<>/modules/geom/src/transform.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c /<>/modules/geom/src/aligned_cuboid.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /<>/modules/geom/src/point_cloud.cc [ 1%] Linking CXX shared library ../../../stage/lib/libost_geom.so cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_geom.so.2.0 -o ../../../stage/lib/libost_geom.so.2.0.0 CMakeFiles/ost_geom.dir/mat2.cc.o CMakeFiles/ost_geom.dir/mat3.cc.o CMakeFiles/ost_geom.dir/mat4.cc.o CMakeFiles/ost_geom.dir/vec3.cc.o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o CMakeFiles/ost_geom.dir/composite2.cc.o CMakeFiles/ost_geom.dir/composite3.cc.o CMakeFiles/ost_geom.dir/composite2_op.cc.o CMakeFiles/ost_geom.dir/composite3_op.cc.o CMakeFiles/ost_geom.dir/quat.cc.o CMakeFiles/ost_geom.dir/transform.cc.o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o CMakeFiles/ost_geom.dir/point_cloud.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so cd /<>/obj-arm-linux-gnueabihf/modules/geom/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_geom.so.2.0.0 ../../../stage/lib/libost_geom.so.2.0 ../../../stage/lib/libost_geom.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 1%] Built target ost_geom make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/base/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/base/src /<>/obj-arm-linux-gnueabihf/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/geom/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/geom/pymod /<>/obj-arm-linux-gnueabihf/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake --color= Scanning dependencies of target ost_base make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' Scanning dependencies of target _ost_geom make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/generic_property.cc.o -c /<>/modules/base/src/generic_property.cc cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/log.cc.o -c /<>/modules/base/src/log.cc cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/log_sink.cc.o -c /<>/modules/base/src/log_sink.cc make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vec2.cc.o -c /<>/modules/geom/pymod/export_vec2.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/profile.cc.o -c /<>/modules/base/src/profile.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/units.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/units.cc.o -c /<>/modules/base/src/units.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/string_ref.cc.o -c /<>/modules/base/src/string_ref.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/platform.cc.o -c /<>/modules/base/src/platform.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/message.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/message.cc.o -c /<>/modules/base/src/message.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o -c /<>/modules/base/src/test_utils/compare_files.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -c /<>/modules/base/src/boost_filesystem_helper.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -c /<>/modules/geom/pymod/export_vecmat2_op.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vec3.cc.o -c /<>/modules/geom/pymod/export_vec3.cc [ 2%] Linking CXX shared library ../../../stage/lib/libost_base.so cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_base.so.2.0 -o ../../../stage/lib/libost_base.so.2.0.0 CMakeFiles/ost_base.dir/generic_property.cc.o CMakeFiles/ost_base.dir/log.cc.o CMakeFiles/ost_base.dir/log_sink.cc.o CMakeFiles/ost_base.dir/profile.cc.o CMakeFiles/ost_base.dir/units.cc.o CMakeFiles/ost_base.dir/string_ref.cc.o CMakeFiles/ost_base.dir/platform.cc.o CMakeFiles/ost_base.dir/message.cc.o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so cd /<>/obj-arm-linux-gnueabihf/modules/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_base.so.2.0.0 ../../../stage/lib/libost_base.so.2.0 ../../../stage/lib/libost_base.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 2%] Built target ost_base make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/info/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/info/src /<>/obj-arm-linux-gnueabihf/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake --color= Scanning dependencies of target ost_info make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 2%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_impl.cc.o -c /<>/modules/info/src/info_impl.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -c /<>/modules/geom/pymod/export_vecmat3_op.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vec4.cc.o -c /<>/modules/geom/pymod/export_vec4.cc [ 2%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_handle.cc.o -c /<>/modules/info/src/info_handle.cc [ 2%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_group.cc.o -c /<>/modules/info/src/info_group.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o -c /<>/modules/geom/pymod/export_vecmat4_op.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o -c /<>/modules/geom/pymod/wrap_geom.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_mat2.cc.o -c /<>/modules/geom/pymod/export_mat2.cc [ 2%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_item.cc.o -c /<>/modules/info/src/info_item.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_mat3.cc.o -c /<>/modules/geom/pymod/export_mat3.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_mat4.cc.o -c /<>/modules/geom/pymod/export_mat4.cc [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_path.cc.o -c /<>/modules/info/src/info_path.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite2.cc.o -c /<>/modules/geom/pymod/export_composite2.cc [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_set.cc.o -c /<>/modules/info/src/info_set.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite3.cc.o -c /<>/modules/geom/pymod/export_composite3.cc [ 4%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_visitor.cc.o -c /<>/modules/info/src/info_visitor.cc [ 4%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -c /<>/modules/info/src/geom_info_conversion.cc [ 4%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -c /<>/modules/geom/pymod/export_composite2_op.cc [ 4%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -c /<>/modules/geom/pymod/export_composite3_op.cc [ 4%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -c /<>/modules/info/src/info_verbose_visitor.cc [ 4%] Linking CXX shared library ../../../stage/lib/libost_info.so cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_info.so.2.0 -o ../../../stage/lib/libost_info.so.2.0.0 CMakeFiles/ost_info.dir/info_impl.cc.o CMakeFiles/ost_info.dir/info_handle.cc.o CMakeFiles/ost_info.dir/info_group.cc.o CMakeFiles/ost_info.dir/info_item.cc.o CMakeFiles/ost_info.dir/info_path.cc.o CMakeFiles/ost_info.dir/info_set.cc.o CMakeFiles/ost_info.dir/info_visitor.cc.o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 ../../../stage/lib/libost_base.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 ../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so cd /<>/obj-arm-linux-gnueabihf/modules/info/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_info.so.2.0.0 ../../../stage/lib/libost_info.so.2.0 ../../../stage/lib/libost_info.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 4%] Built target ost_info make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/mol/base/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/mol/base/src /<>/obj-arm-linux-gnueabihf/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake --color= Scanning dependencies of target ost_mol make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 4%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/atom_base.cc.o -c /<>/modules/mol/base/src/atom_base.cc [ 4%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_quat.cc.o -c /<>/modules/geom/pymod/export_quat.cc [ 4%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_transform.cc.o -c /<>/modules/geom/pymod/export_transform.cc [ 4%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/atom_handle.cc.o -c /<>/modules/mol/base/src/atom_handle.cc [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/atom_view.cc.o -c /<>/modules/mol/base/src/atom_view.cc [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/bond_handle.cc.o -c /<>/modules/mol/base/src/bond_handle.cc [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_base.cc.o -c /<>/modules/mol/base/src/chain_base.cc [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_handle.cc.o -c /<>/modules/mol/base/src/chain_handle.cc [ 6%] Linking CXX shared module ../../../stage/lib/python3.8/dist-packages/ost/geom/_ost_geom.so cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../stage/lib/python3.8/dist-packages/ost/geom/_ost_geom.so CMakeFiles/_ost_geom.dir/export_vec2.cc.o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o CMakeFiles/_ost_geom.dir/export_vec3.cc.o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o CMakeFiles/_ost_geom.dir/export_vec4.cc.o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o CMakeFiles/_ost_geom.dir/export_mat2.cc.o CMakeFiles/_ost_geom.dir/export_mat3.cc.o CMakeFiles/_ost_geom.dir/export_mat4.cc.o CMakeFiles/_ost_geom.dir/export_composite2.cc.o CMakeFiles/_ost_geom.dir/export_composite3.cc.o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o CMakeFiles/_ost_geom.dir/export_quat.cc.o CMakeFiles/_ost_geom.dir/export_transform.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libpython3.8.so /usr/lib/arm-linux-gnueabihf/libboost_python38.so /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_view.cc.o -c /<>/modules/mol/base/src/chain_view.cc cd /<>/obj-arm-linux-gnueabihf/modules/geom/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/geom/pymod/__init__.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/geom/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 6%] Built target _ost_geom make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/img/base/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/img/base/src /<>/obj-arm-linux-gnueabihf/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake --color= Scanning dependencies of target ost_img make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/circle_mask.cc.o -c /<>/modules/img/base/src/circle_mask.cc [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_type.cc.o -c /<>/modules/mol/base/src/chain_type.cc [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/composite_mask.cc.o -c /<>/modules/img/base/src/composite_mask.cc [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/coord_frame.cc.o -c /<>/modules/mol/base/src/coord_frame.cc [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/coord_group.cc.o -c /<>/modules/mol/base/src/coord_group.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/data_algorithm.cc.o -c /<>/modules/img/base/src/data_algorithm.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/data_observer.cc.o -c /<>/modules/img/base/src/data_observer.cc [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/editor_base.cc.o -c /<>/modules/mol/base/src/editor_base.cc [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_base.cc.o -c /<>/modules/mol/base/src/entity_base.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/data.cc.o -c /<>/modules/img/base/src/data.cc [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_handle.cc.o -c /<>/modules/mol/base/src/entity_handle.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/extent_iterator.cc.o -c /<>/modules/img/base/src/extent_iterator.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_observer.cc.o -c /<>/modules/mol/base/src/entity_observer.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -c /<>/modules/mol/base/src/entity_property_mapper.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_view.cc.o -c /<>/modules/mol/base/src/entity_view.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/extent_mask.cc.o -c /<>/modules/img/base/src/extent_mask.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_visitor.cc.o -c /<>/modules/mol/base/src/entity_visitor.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/extent.cc.o -c /<>/modules/img/base/src/extent.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/ics_editor.cc.o -c /<>/modules/mol/base/src/ics_editor.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/not_connected_error.cc.o -c /<>/modules/mol/base/src/not_connected_error.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_factory.cc.o -c /<>/modules/img/base/src/image_factory.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/property_id.cc.o -c /<>/modules/mol/base/src/property_id.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query.cc.o -c /<>/modules/mol/base/src/query.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_handle.cc.o -c /<>/modules/img/base/src/image_handle.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query_error.cc.o -c /<>/modules/mol/base/src/query_error.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query_state.cc.o -c /<>/modules/mol/base/src/query_state.cc [ 9%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/residue_base.cc.o -c /<>/modules/mol/base/src/residue_base.cc [ 9%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/residue_handle.cc.o -c /<>/modules/mol/base/src/residue_handle.cc [ 9%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_impl.cc.o -c /<>/modules/img/base/src/image_impl.cc [ 9%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/residue_view.cc.o -c /<>/modules/mol/base/src/residue_view.cc [ 9%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_list.cc.o -c /<>/modules/img/base/src/image_list.cc [ 9%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/surface_builder.cc.o -c /<>/modules/mol/base/src/surface_builder.cc [ 9%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/surface_handle.cc.o -c /<>/modules/mol/base/src/surface_handle.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/inverted_mask.cc.o -c /<>/modules/img/base/src/inverted_mask.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -c /<>/modules/mol/base/src/transfer_connectivity.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/torsion_handle.cc.o -c /<>/modules/mol/base/src/torsion_handle.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/map.cc.o -c /<>/modules/img/base/src/map.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -c /<>/modules/mol/base/src/query_view_wrapper.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask_base.cc.o -c /<>/modules/img/base/src/mask_base.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/view_op.cc.o -c /<>/modules/mol/base/src/view_op.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/coord_source.cc.o -c /<>/modules/mol/base/src/coord_source.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -c /<>/modules/mol/base/src/in_mem_coord_source.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask_op.cc.o -c /<>/modules/img/base/src/mask_op.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask.cc.o -c /<>/modules/img/base/src/mask.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/bounding_box.cc.o -c /<>/modules/mol/base/src/bounding_box.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/xcs_editor.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/xcs_editor.cc.o -c /<>/modules/mol/base/src/xcs_editor.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/observable.cc.o -c /<>/modules/img/base/src/observable.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -c /<>/modules/mol/base/src/impl/atom_impl.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/paste_impl.cc.o -c /<>/modules/img/base/src/paste_impl.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -c /<>/modules/mol/base/src/impl/chain_impl.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o -c /<>/modules/mol/base/src/impl/connector_impl.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/peak.cc.o -c /<>/modules/img/base/src/peak.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/dihedral.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o -c /<>/modules/mol/base/src/impl/dihedral.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o -c /<>/modules/mol/base/src/impl/entity_impl.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -c /<>/modules/mol/base/src/impl/fragment_impl.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/phase.cc.o -c /<>/modules/img/base/src/phase.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/physical_units.cc.o -c /<>/modules/img/base/src/physical_units.cc [ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/pixel_sampling.cc.o -c /<>/modules/img/base/src/pixel_sampling.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -c /<>/modules/mol/base/src/impl/query_ast.cc [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -c /<>/modules/mol/base/src/impl/query_impl.cc [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/point_list.cc.o -c /<>/modules/img/base/src/point_list.cc [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/point.cc.o -c /<>/modules/img/base/src/point.cc [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/polygon_mask.cc.o -c /<>/modules/img/base/src/polygon_mask.cc [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/progress.cc.o -c /<>/modules/img/base/src/progress.cc [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/size.cc.o -c /<>/modules/img/base/src/size.cc [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/spherical_mask.cc.o -c /<>/modules/img/base/src/spherical_mask.cc [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask_info_convert.cc.o -c /<>/modules/img/base/src/mask_info_convert.cc [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -c /<>/modules/img/base/src/image_state/image_state_factory.cc [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -c /<>/modules/mol/base/src/impl/residue_impl.cc [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -c /<>/modules/mol/base/src/impl/surface_impl.cc [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -c /<>/modules/mol/base/src/impl/torsion_impl.cc [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_state/index.cc.o -c /<>/modules/img/base/src/image_state/index.cc [ 16%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -c /<>/modules/img/base/src/image_state/image_state_base.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -c /<>/modules/mol/base/src/impl/atom_prop.cc [ 16%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -c /<>/modules/img/base/src/raster_image/raster_image.cc [ 16%] Linking CXX shared library ../../../../stage/lib/libost_mol.so cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_mol.so.2.0 -o ../../../../stage/lib/libost_mol.so.2.0.0 CMakeFiles/ost_mol.dir/atom_base.cc.o CMakeFiles/ost_mol.dir/atom_handle.cc.o CMakeFiles/ost_mol.dir/atom_view.cc.o CMakeFiles/ost_mol.dir/bond_handle.cc.o CMakeFiles/ost_mol.dir/chain_base.cc.o CMakeFiles/ost_mol.dir/chain_handle.cc.o CMakeFiles/ost_mol.dir/chain_view.cc.o CMakeFiles/ost_mol.dir/chain_type.cc.o CMakeFiles/ost_mol.dir/coord_frame.cc.o CMakeFiles/ost_mol.dir/coord_group.cc.o CMakeFiles/ost_mol.dir/editor_base.cc.o CMakeFiles/ost_mol.dir/entity_base.cc.o CMakeFiles/ost_mol.dir/entity_handle.cc.o CMakeFiles/ost_mol.dir/entity_observer.cc.o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o CMakeFiles/ost_mol.dir/entity_view.cc.o CMakeFiles/ost_mol.dir/entity_visitor.cc.o CMakeFiles/ost_mol.dir/ics_editor.cc.o CMakeFiles/ost_mol.dir/not_connected_error.cc.o CMakeFiles/ost_mol.dir/property_id.cc.o CMakeFiles/ost_mol.dir/query.cc.o CMakeFiles/ost_mol.dir/query_error.cc.o CMakeFiles/ost_mol.dir/query_state.cc.o CMakeFiles/ost_mol.dir/residue_base.cc.o CMakeFiles/ost_mol.dir/residue_handle.cc.o CMakeFiles/ost_mol.dir/residue_view.cc.o CMakeFiles/ost_mol.dir/surface_builder.cc.o CMakeFiles/ost_mol.dir/surface_handle.cc.o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o CMakeFiles/ost_mol.dir/torsion_handle.cc.o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o CMakeFiles/ost_mol.dir/view_op.cc.o CMakeFiles/ost_mol.dir/coord_source.cc.o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o CMakeFiles/ost_mol.dir/bounding_box.cc.o CMakeFiles/ost_mol.dir/xcs_editor.cc.o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../../stage/lib/libost_info.so.2.0.0 ../../../../stage/lib/libost_base.so.2.0.0 ../../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol.so.2.0.0 ../../../../stage/lib/libost_mol.so.2.0 ../../../../stage/lib/libost_mol.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 16%] Built target ost_mol make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/base/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/base/pymod /<>/obj-arm-linux-gnueabihf/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/seq/base/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/seq/base/src /<>/obj-arm-linux-gnueabihf/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake --color= Scanning dependencies of target _ost_base make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 16%] Linking CXX shared library ../../../../stage/lib/libost_img.so cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img.dir/link.txt --verbose=1 [ 16%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o [ 16%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/wrap_base.cc.o -c /<>/modules/base/pymod/wrap_base.cc cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/export_logger.cc.o -c /<>/modules/base/pymod/export_logger.cc /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_img.so.2.0 -o ../../../../stage/lib/libost_img.so.2.0.0 CMakeFiles/ost_img.dir/circle_mask.cc.o CMakeFiles/ost_img.dir/composite_mask.cc.o CMakeFiles/ost_img.dir/data_algorithm.cc.o CMakeFiles/ost_img.dir/data_observer.cc.o CMakeFiles/ost_img.dir/data.cc.o CMakeFiles/ost_img.dir/extent_iterator.cc.o CMakeFiles/ost_img.dir/extent_mask.cc.o CMakeFiles/ost_img.dir/extent.cc.o CMakeFiles/ost_img.dir/image_factory.cc.o CMakeFiles/ost_img.dir/image_handle.cc.o CMakeFiles/ost_img.dir/image_impl.cc.o CMakeFiles/ost_img.dir/image_list.cc.o CMakeFiles/ost_img.dir/inverted_mask.cc.o CMakeFiles/ost_img.dir/map.cc.o CMakeFiles/ost_img.dir/mask_base.cc.o CMakeFiles/ost_img.dir/mask_op.cc.o CMakeFiles/ost_img.dir/mask.cc.o CMakeFiles/ost_img.dir/observable.cc.o CMakeFiles/ost_img.dir/paste_impl.cc.o CMakeFiles/ost_img.dir/peak.cc.o CMakeFiles/ost_img.dir/phase.cc.o CMakeFiles/ost_img.dir/physical_units.cc.o CMakeFiles/ost_img.dir/pixel_sampling.cc.o CMakeFiles/ost_img.dir/point_list.cc.o CMakeFiles/ost_img.dir/point.cc.o CMakeFiles/ost_img.dir/polygon_mask.cc.o CMakeFiles/ost_img.dir/progress.cc.o CMakeFiles/ost_img.dir/size.cc.o CMakeFiles/ost_img.dir/spherical_mask.cc.o CMakeFiles/ost_img.dir/mask_info_convert.cc.o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o CMakeFiles/ost_img.dir/image_state/index.cc.o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../../stage/lib/libost_info.so.2.0.0 ../../../../stage/lib/libost_base.so.2.0.0 ../../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 Scanning dependencies of target ost_seq make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 16%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -c /<>/modules/seq/base/src/impl/sequence_impl.cc cd /<>/obj-arm-linux-gnueabihf/modules/img/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img.so.2.0.0 ../../../../stage/lib/libost_img.so.2.0 ../../../../stage/lib/libost_img.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 16%] Built target ost_img make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/img/alg/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/img/alg/src /<>/obj-arm-linux-gnueabihf/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake --color= Scanning dependencies of target ost_img_alg make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -c /<>/modules/img/alg/src/anisotropic.cc [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -c /<>/modules/img/alg/src/auto_correlate.cc [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/convolute.cc.o -c /<>/modules/img/alg/src/convolute.cc [ 16%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -c /<>/modules/seq/base/src/impl/sequence_list_impl.cc [ 16%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/export_range.cc.o -c /<>/modules/base/pymod/export_range.cc [ 16%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/sequence_handle.cc.o -c /<>/modules/seq/base/src/sequence_handle.cc [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/correlate.cc.o -c /<>/modules/img/alg/src/correlate.cc [ 16%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/aligned_region.cc.o -c /<>/modules/seq/base/src/aligned_region.cc [ 16%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/export_units.cc.o -c /<>/modules/base/pymod/export_units.cc [ 16%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/aligned_column.cc.o -c /<>/modules/seq/base/src/aligned_column.cc [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -c /<>/modules/img/alg/src/cross_correlate.cc [ 16%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/sequence_list.cc.o -c /<>/modules/seq/base/src/sequence_list.cc [ 16%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/alignment_handle.cc.o -c /<>/modules/seq/base/src/alignment_handle.cc [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/density_slice.cc.o -c /<>/modules/img/alg/src/density_slice.cc [ 17%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/sequence_op.cc.o -c /<>/modules/seq/base/src/sequence_op.cc [ 17%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -c /<>/modules/seq/base/src/views_from_sequences.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/dft.cc.o -c /<>/modules/img/alg/src/dft.cc [ 17%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/profile_handle.cc.o -c /<>/modules/seq/base/src/profile_handle.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/fft.cc.o -c /<>/modules/img/alg/src/fft.cc [ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o -c /<>/modules/img/alg/src/fourier_filters.cc [ 18%] Linking CXX shared module ../../../stage/lib/python3.8/dist-packages/ost/_ost_base.so cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_base.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../stage/lib/python3.8/dist-packages/ost/_ost_base.so CMakeFiles/_ost_base.dir/wrap_base.cc.o CMakeFiles/_ost_base.dir/export_logger.cc.o CMakeFiles/_ost_base.dir/export_range.cc.o CMakeFiles/_ost_base.dir/export_units.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../stage/lib/libost_base.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libpython3.8.so /usr/lib/arm-linux-gnueabihf/libboost_python38.so ../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so [ 18%] Linking CXX shared library ../../../../stage/lib/libost_seq.so cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_seq.so.2.0 -o ../../../../stage/lib/libost_seq.so.2.0.0 CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o CMakeFiles/ost_seq.dir/sequence_handle.cc.o CMakeFiles/ost_seq.dir/aligned_region.cc.o CMakeFiles/ost_seq.dir/aligned_column.cc.o CMakeFiles/ost_seq.dir/sequence_list.cc.o CMakeFiles/ost_seq.dir/alignment_handle.cc.o CMakeFiles/ost_seq.dir/sequence_op.cc.o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o CMakeFiles/ost_seq.dir/profile_handle.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.0.0 ../../../../stage/lib/libost_info.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 ../../../../stage/lib/libost_base.so.2.0.0 ../../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/base/pymod/settings.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/./settings.pyc\",\"settings.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/base/pymod/stutil.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/./stutil.pyc\",\"stutil.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/base/pymod/table.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/./table.pyc\",\"table.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/base/pymod/table_selector.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/./table_selector.pyc\",\"table_selector.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/base/pymod/xmlrunner.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/./xmlrunner.pyc\",\"xmlrunner.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq.so.2.0.0 ../../../../stage/lib/libost_seq.so.2.0 ../../../../stage/lib/libost_seq.so cd /<>/obj-arm-linux-gnueabihf/modules/base/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/base/pymod/testutils.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/./testutils.pyc\",\"testutils.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 18%] Built target ost_seq make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/bindings/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/bindings/src /<>/obj-arm-linux-gnueabihf/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 18%] Built target _ost_base make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend Scanning dependencies of target ost_bindings make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/seq/alg/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 18%] Building CXX object modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/bindings/src && /usr/bin/c++ -DOST_MODULE_OST_BINDINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_bindings_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -c /<>/modules/bindings/src/wrap_tmalign.cc Scanning dependencies of target ost_seq_alg make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 18%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -c /<>/modules/seq/alg/src/clip_alignment.cc [ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/gaussian.cc.o -c /<>/modules/img/alg/src/gaussian.cc [ 18%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/conservation.cc.o -c /<>/modules/seq/alg/src/conservation.cc [ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -c /<>/modules/img/alg/src/gaussian_gradient_magnitude.cc [ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o -c /<>/modules/img/alg/src/gaussian_laplacian.cc [ 18%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -c /<>/modules/seq/alg/src/contact_prediction_score.cc [ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -c /<>/modules/img/alg/src/highest_peak_search_3d.cc [ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/histogram.cc.o -c /<>/modules/img/alg/src/histogram.cc [ 18%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -c /<>/modules/seq/alg/src/contact_weight_matrix.cc [ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -c /<>/modules/img/alg/src/line_iterator.cc [ 18%] Linking CXX shared library ../../../stage/lib/libost_bindings.so cd /<>/obj-arm-linux-gnueabihf/modules/bindings/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_bindings.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_bindings.so.2.0 -o ../../../stage/lib/libost_bindings.so.2.0.0 CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../stage/lib/libost_seq.so.2.0.0 ../../../stage/lib/libost_mol.so.2.0.0 ../../../stage/lib/libost_info.so.2.0.0 ../../../stage/lib/libost_base.so.2.0.0 ../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so cd /<>/obj-arm-linux-gnueabihf/modules/bindings/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_bindings.so.2.0.0 ../../../stage/lib/libost_bindings.so.2.0 ../../../stage/lib/libost_bindings.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 18%] Built target ost_bindings make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/db/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/db/src /<>/obj-arm-linux-gnueabihf/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake --color= Scanning dependencies of target ost_db make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 18%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -c /<>/modules/db/src/sqlite_wrap.cc [ 18%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -c /<>/modules/seq/alg/src/distance_map.cc [ 18%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/linear_indexer.cc.o -c /<>/modules/db/src/linear_indexer.cc [ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -c /<>/modules/img/alg/src/local_sigma_threshold.cc [ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/mask_image.cc.o -c /<>/modules/img/alg/src/mask_image.cc In file included from /usr/include/c++/10/vector:72, from /<>/obj-arm-linux-gnueabihf/stage/include/ost/db/linear_indexer.hh:26, from /<>/modules/db/src/linear_indexer.cc:21: /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = ost::db::AssemblyInfo; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 171 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/obj-arm-linux-gnueabihf/stage/include/ost/db/linear_indexer.hh:26, from /<>/modules/db/src/linear_indexer.cc:21: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void ost::db::LinearIndexer::RemoveAssembly(const String&)’: /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1431 | { return _M_erase(begin() + (__position - cbegin())); } | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/obj-arm-linux-gnueabihf/stage/include/ost/db/linear_indexer.hh:26, from /<>/modules/db/src/linear_indexer.cc:21: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ost::db::AssemblyInfo}; _Tp = ost::db::AssemblyInfo; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘void ost::db::LinearIndexer::AddAssembly(const String&, const std::vector >&, const std::vector&)’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/entropy.cc.o -c /<>/modules/seq/alg/src/entropy.cc [ 19%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/binary_container.cc.o -c /<>/modules/db/src/binary_container.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/normalizer.cc.o -c /<>/modules/img/alg/src/normalizer.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -c /<>/modules/img/alg/src/normalizer_factory.cc [ 22%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/global_align.cc.o -c /<>/modules/seq/alg/src/global_align.cc In file included from /usr/include/c++/10/vector:72, from /<>/obj-arm-linux-gnueabihf/stage/include/ost/db/binary_container.hh:24, from /<>/modules/db/src/binary_container.cc:21: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/obj-arm-linux-gnueabihf/stage/include/ost/db/binary_container.hh:24, from /<>/modules/db/src/binary_container.cc:21: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void ost::db::LinearPositionContainer::AddPositions(const geom::Vec3List&)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 22%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -c /<>/modules/db/src/extract_data_helper.cc [ 22%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -c /<>/modules/img/alg/src/norm_linear.cc [ 22%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/norm_log.cc.o -c /<>/modules/img/alg/src/norm_log.cc [ 22%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -c /<>/modules/seq/alg/src/ins_del.cc [ 22%] Linking CXX shared library ../../../stage/lib/libost_db.so cd /<>/obj-arm-linux-gnueabihf/modules/db/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_db.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_db.so.2.0 -o ../../../stage/lib/libost_db.so.2.0.0 CMakeFiles/ost_db.dir/sqlite_wrap.cc.o CMakeFiles/ost_db.dir/linear_indexer.cc.o CMakeFiles/ost_db.dir/binary_container.cc.o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: /usr/lib/arm-linux-gnueabihf/libsqlite3.so ../../../stage/lib/libost_seq.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.0.0 ../../../stage/lib/libost_info.so.2.0.0 ../../../stage/lib/libost_base.so.2.0.0 ../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 cd /<>/obj-arm-linux-gnueabihf/modules/db/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_db.so.2.0.0 ../../../stage/lib/libost_db.so.2.0 ../../../stage/lib/libost_db.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 22%] Built target ost_db make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend [ 22%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/norm_od.cc.o -c /<>/modules/img/alg/src/norm_od.cc cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/info/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/info/pymod /<>/obj-arm-linux-gnueabihf/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake --color= Scanning dependencies of target _ost_info make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 23%] Building CXX object modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/info/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_info_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_info.dir/wrap_info.cc.o -c /<>/modules/info/pymod/wrap_info.cc [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -c /<>/modules/img/alg/src/power_spectrum.cc [ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/local_align.cc.o -c /<>/modules/seq/alg/src/local_align.cc [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/randomize.cc.o -c /<>/modules/img/alg/src/randomize.cc [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -c /<>/modules/img/alg/src/smooth_mask_image.cc [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/stat.cc.o -c /<>/modules/img/alg/src/stat.cc [ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -c /<>/modules/seq/alg/src/merge_pairwise_alignments.cc [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -c /<>/modules/img/alg/src/stat_min_max.cc [ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -c /<>/modules/seq/alg/src/pair_subst_weight_matrix.cc [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o -c /<>/modules/img/alg/src/alg_transform.cc [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -c /<>/modules/img/alg/src/alg_mirror.cc [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -c /<>/modules/seq/alg/src/semiglobal_align.cc [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_shift.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o -c /<>/modules/img/alg/src/alg_shift.cc [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/threshold.cc.o -c /<>/modules/img/alg/src/threshold.cc [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -c /<>/modules/seq/alg/src/sequence_identity.cc [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -c /<>/modules/img/alg/src/discrete_shrink.cc [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -c /<>/modules/img/alg/src/transformation_base.cc [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -c /<>/modules/seq/alg/src/sequence_similarity.cc [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/transformations.cc.o -c /<>/modules/img/alg/src/transformations.cc [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -c /<>/modules/img/alg/src/fractional_shift.cc [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -c /<>/modules/seq/alg/src/subst_weight_matrix.cc [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/polar.cc.o -c /<>/modules/img/alg/src/polar.cc [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -c /<>/modules/seq/alg/src/variance_map.cc [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -c /<>/modules/img/alg/src/rscrosscorr.cc [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/line_average.cc.o -c /<>/modules/img/alg/src/line_average.cc [ 25%] Linking CXX shared library ../../../../stage/lib/libost_seq_alg.so cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_seq_alg.so.2.0 -o ../../../../stage/lib/libost_seq_alg.so.2.0.0 CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o CMakeFiles/ost_seq_alg.dir/conservation.cc.o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o CMakeFiles/ost_seq_alg.dir/entropy.cc.o CMakeFiles/ost_seq_alg.dir/global_align.cc.o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o CMakeFiles/ost_seq_alg.dir/local_align.cc.o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../../stage/lib/libost_seq.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.0.0 ../../../../stage/lib/libost_info.so.2.0.0 ../../../../stage/lib/libost_base.so.2.0.0 ../../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq_alg.so.2.0.0 ../../../../stage/lib/libost_seq_alg.so.2.0 ../../../../stage/lib/libost_seq_alg.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 25%] Built target ost_seq_alg make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/conop/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/conop/src /<>/obj-arm-linux-gnueabihf/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake --color= Scanning dependencies of target ost_conop make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 25%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/processor.cc.o -c /<>/modules/conop/src/processor.cc [ 25%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/amino_acids.cc.o -c /<>/modules/conop/src/amino_acids.cc [ 27%] Linking CXX shared library ../../../../stage/lib/libost_img_alg.so cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_img_alg.so.2.0 -o ../../../../stage/lib/libost_img_alg.so.2.0.0 CMakeFiles/ost_img_alg.dir/anisotropic.cc.o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o CMakeFiles/ost_img_alg.dir/convolute.cc.o CMakeFiles/ost_img_alg.dir/correlate.cc.o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o CMakeFiles/ost_img_alg.dir/density_slice.cc.o CMakeFiles/ost_img_alg.dir/dft.cc.o CMakeFiles/ost_img_alg.dir/fft.cc.o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o CMakeFiles/ost_img_alg.dir/gaussian.cc.o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o CMakeFiles/ost_img_alg.dir/histogram.cc.o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o CMakeFiles/ost_img_alg.dir/mask_image.cc.o CMakeFiles/ost_img_alg.dir/normalizer.cc.o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o CMakeFiles/ost_img_alg.dir/norm_log.cc.o CMakeFiles/ost_img_alg.dir/norm_od.cc.o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o CMakeFiles/ost_img_alg.dir/randomize.cc.o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o CMakeFiles/ost_img_alg.dir/stat.cc.o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o CMakeFiles/ost_img_alg.dir/threshold.cc.o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o CMakeFiles/ost_img_alg.dir/transformations.cc.o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o CMakeFiles/ost_img_alg.dir/polar.cc.o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o CMakeFiles/ost_img_alg.dir/line_average.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.0.0 ../../../../stage/lib/libost_info.so.2.0.0 ../../../../stage/lib/libost_base.so.2.0.0 ../../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 [ 27%] Linking CXX shared module ../../../stage/lib/python3.8/dist-packages/ost/info/_ost_info.so cd /<>/obj-arm-linux-gnueabihf/modules/info/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../stage/lib/python3.8/dist-packages/ost/info/_ost_info.so CMakeFiles/_ost_info.dir/wrap_info.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../stage/lib/libost_info.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libpython3.8.so /usr/lib/arm-linux-gnueabihf/libboost_python38.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 ../../../stage/lib/libost_base.so.2.0.0 ../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img_alg.so.2.0.0 ../../../../stage/lib/libost_img_alg.so.2.0 ../../../../stage/lib/libost_img_alg.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 27%] Built target ost_img_alg [ 28%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/conop.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/conop.cc.o -c /<>/modules/conop/src/conop.cc cd /<>/obj-arm-linux-gnueabihf/modules/info/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/info/pymod/__init__.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/info/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 28%] Built target _ost_info make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/mol/base/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake --color= Scanning dependencies of target _ost_mol make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_atom.cc.o -c /<>/modules/mol/base/pymod/export_atom.cc [ 28%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o -c /<>/modules/conop/src/minimal_compound_lib.cc [ 28%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -c /<>/modules/conop/src/compound_lib_base.cc [ 28%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/heuristic.cc.o -c /<>/modules/conop/src/heuristic.cc [ 28%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/diag.cc.o -c /<>/modules/conop/src/diag.cc [ 28%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/rule_based.cc.o -c /<>/modules/conop/src/rule_based.cc [ 28%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/model_check.cc.o -c /<>/modules/conop/src/model_check.cc [ 28%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/compound.cc.o -c /<>/modules/conop/src/compound.cc [ 28%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/compound_lib.cc.o -c /<>/modules/conop/src/compound_lib.cc [ 28%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/ring_finder.cc.o -c /<>/modules/conop/src/ring_finder.cc [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -c /<>/modules/mol/base/pymod/export_atom_view.cc [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_bond.cc.o -c /<>/modules/mol/base/pymod/export_bond.cc [ 29%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_chain.cc.o -c /<>/modules/mol/base/pymod/export_chain.cc [ 30%] Linking CXX shared library ../../../stage/lib/libost_conop.so cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_conop.so.2.0 -o ../../../stage/lib/libost_conop.so.2.0.0 CMakeFiles/ost_conop.dir/processor.cc.o CMakeFiles/ost_conop.dir/amino_acids.cc.o CMakeFiles/ost_conop.dir/conop.cc.o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o CMakeFiles/ost_conop.dir/heuristic.cc.o CMakeFiles/ost_conop.dir/diag.cc.o CMakeFiles/ost_conop.dir/rule_based.cc.o CMakeFiles/ost_conop.dir/model_check.cc.o CMakeFiles/ost_conop.dir/compound.cc.o CMakeFiles/ost_conop.dir/compound_lib.cc.o CMakeFiles/ost_conop.dir/ring_finder.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../stage/lib/libost_db.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libsqlite3.so ../../../stage/lib/libost_seq.so.2.0.0 ../../../stage/lib/libost_mol.so.2.0.0 ../../../stage/lib/libost_info.so.2.0.0 ../../../stage/lib/libost_base.so.2.0.0 ../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so cd /<>/obj-arm-linux-gnueabihf/modules/conop/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_conop.so.2.0.0 ../../../stage/lib/libost_conop.so.2.0 ../../../stage/lib/libost_conop.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 30%] Built target ost_conop make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/img/base/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake --color= Scanning dependencies of target _ost_img make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_data.cc.o -c /<>/modules/img/base/pymod/export_data.cc [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -c /<>/modules/mol/base/pymod/export_chain_view.cc [ 32%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -c /<>/modules/img/base/pymod/export_data_algorithm.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -c /<>/modules/mol/base/pymod/export_coord_group.cc [ 32%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_extent.cc.o -c /<>/modules/img/base/pymod/export_extent.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -c /<>/modules/mol/base/pymod/export_coord_frame.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_editors.cc.o -c /<>/modules/mol/base/pymod/export_editors.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_entity.cc.o -c /<>/modules/mol/base/pymod/export_entity.cc [ 32%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_image_handle.cc.o -c /<>/modules/img/base/pymod/export_image_handle.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -c /<>/modules/mol/base/pymod/export_entity_view.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_property_id.cc.o -c /<>/modules/mol/base/pymod/export_property_id.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_query.cc.o -c /<>/modules/mol/base/pymod/export_query.cc [ 32%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_peak.cc.o -c /<>/modules/img/base/pymod/export_peak.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_residue.cc.o -c /<>/modules/mol/base/pymod/export_residue.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -c /<>/modules/mol/base/pymod/export_residue_view.cc [ 33%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_surface.cc.o -c /<>/modules/mol/base/pymod/export_surface.cc [ 33%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_phase.cc.o -c /<>/modules/img/base/pymod/export_phase.cc [ 33%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_point.cc.o -c /<>/modules/img/base/pymod/export_point.cc [ 33%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -c /<>/modules/mol/base/pymod/export_bounding_box.cc [ 33%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -c /<>/modules/mol/base/pymod/export_query_view_wrapper.cc [ 33%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_torsion.cc.o -c /<>/modules/mol/base/pymod/export_torsion.cc [ 33%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_progress.cc.o -c /<>/modules/img/base/pymod/export_progress.cc [ 33%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_visitor.cc.o -c /<>/modules/mol/base/pymod/export_visitor.cc [ 33%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_raster_image.cc.o -c /<>/modules/img/base/pymod/export_raster_image.cc [ 33%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -c /<>/modules/mol/base/pymod/wrap_mol.cc [ 33%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -c /<>/modules/mol/base/pymod/export_entity_property_mapper.cc [ 33%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_size.cc.o -c /<>/modules/img/base/pymod/export_size.cc [ 33%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_mask.cc.o -c /<>/modules/img/base/pymod/export_mask.cc [ 34%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_image_list.cc.o -c /<>/modules/img/base/pymod/export_image_list.cc [ 34%] Linking CXX shared module ../../../../stage/lib/python3.8/dist-packages/ost/mol/_ost_mol.so cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../stage/lib/python3.8/dist-packages/ost/mol/_ost_mol.so CMakeFiles/_ost_mol.dir/export_atom.cc.o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o CMakeFiles/_ost_mol.dir/export_bond.cc.o CMakeFiles/_ost_mol.dir/export_chain.cc.o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o CMakeFiles/_ost_mol.dir/export_editors.cc.o CMakeFiles/_ost_mol.dir/export_entity.cc.o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o CMakeFiles/_ost_mol.dir/export_property_id.cc.o CMakeFiles/_ost_mol.dir/export_query.cc.o CMakeFiles/_ost_mol.dir/export_residue.cc.o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o CMakeFiles/_ost_mol.dir/export_surface.cc.o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o CMakeFiles/_ost_mol.dir/export_torsion.cc.o CMakeFiles/_ost_mol.dir/export_visitor.cc.o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../../stage/lib/libost_mol.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libpython3.8.so /usr/lib/arm-linux-gnueabihf/libboost_python38.so ../../../../stage/lib/libost_info.so.2.0.0 ../../../../stage/lib/libost_base.so.2.0.0 ../../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 [ 34%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_map.cc.o -c /<>/modules/img/base/pymod/export_map.cc [ 34%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/wrap_img.cc.o -c /<>/modules/img/base/pymod/wrap_img.cc cd /<>/obj-arm-linux-gnueabihf/modules/mol/base/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/mol/base/pymod/__init__.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/mol/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 34%] Built target _ost_mol make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/seq/base/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/seq/base/pymod /<>/obj-arm-linux-gnueabihf/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake --color= Scanning dependencies of target _ost_seq make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 34%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq.dir/export_sequence.cc.o -c /<>/modules/seq/base/pymod/export_sequence.cc [ 34%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -c /<>/modules/seq/base/pymod/export_profile_handle.cc [ 34%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -c /<>/modules/seq/base/pymod/wrap_seq.cc [ 34%] Linking CXX shared module ../../../../stage/lib/python3.8/dist-packages/ost/img/_ost_img.so cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../stage/lib/python3.8/dist-packages/ost/img/_ost_img.so CMakeFiles/_ost_img.dir/export_data.cc.o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o CMakeFiles/_ost_img.dir/export_extent.cc.o CMakeFiles/_ost_img.dir/export_image_handle.cc.o CMakeFiles/_ost_img.dir/export_peak.cc.o CMakeFiles/_ost_img.dir/export_phase.cc.o CMakeFiles/_ost_img.dir/export_point.cc.o CMakeFiles/_ost_img.dir/export_progress.cc.o CMakeFiles/_ost_img.dir/export_raster_image.cc.o CMakeFiles/_ost_img.dir/export_size.cc.o CMakeFiles/_ost_img.dir/export_mask.cc.o CMakeFiles/_ost_img.dir/export_image_list.cc.o CMakeFiles/_ost_img.dir/export_map.cc.o CMakeFiles/_ost_img.dir/wrap_img.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../../stage/lib/libost_img.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libpython3.8.so /usr/lib/arm-linux-gnueabihf/libboost_python38.so ../../../../stage/lib/libost_info.so.2.0.0 ../../../../stage/lib/libost_base.so.2.0.0 ../../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 cd /<>/obj-arm-linux-gnueabihf/modules/img/base/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/img/base/pymod/__init__.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/img/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 34%] Built target _ost_img make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/mol/alg/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake --color= Scanning dependencies of target ost_mol_alg make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -c /<>/modules/mol/alg/src/svd_superpose.cc [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -c /<>/modules/mol/alg/src/clash_score.cc [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -c /<>/modules/mol/alg/src/sec_structure_segments.cc [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -c /<>/modules/mol/alg/src/local_dist_diff_test.cc [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -c /<>/modules/mol/alg/src/distance_test_common.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -c /<>/modules/mol/alg/src/distance_rmsd_test.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -c /<>/modules/mol/alg/src/superpose_frames.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -c /<>/modules/mol/alg/src/filter_clashes.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -c /<>/modules/mol/alg/src/construct_cbeta.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -c /<>/modules/mol/alg/src/trajectory_analysis.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -c /<>/modules/mol/alg/src/structure_analysis.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -c /<>/modules/mol/alg/src/consistency_checks.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -c /<>/modules/mol/alg/src/pdbize.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -c /<>/modules/mol/alg/src/adjacency_bitmap.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -c /<>/modules/mol/alg/src/contact_overlap.cc [ 35%] Linking CXX shared module ../../../../stage/lib/python3.8/dist-packages/ost/seq/_ost_seq.so cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../stage/lib/python3.8/dist-packages/ost/seq/_ost_seq.so CMakeFiles/_ost_seq.dir/export_sequence.cc.o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../../stage/lib/libost_seq.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libpython3.8.so /usr/lib/arm-linux-gnueabihf/libboost_python38.so /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.0.0 ../../../../stage/lib/libost_info.so.2.0.0 ../../../../stage/lib/libost_base.so.2.0.0 ../../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -c /<>/modules/mol/alg/src/domain_find.cc cd /<>/obj-arm-linux-gnueabihf/modules/seq/base/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/seq/base/pymod/__init__.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/seq/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 37%] Built target _ost_seq make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/gfx/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/gfx/src /<>/obj-arm-linux-gnueabihf/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake --color= Scanning dependencies of target ost_gfx make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/bitmap_io.cc.o -c /<>/modules/gfx/src/bitmap_io.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -c /<>/modules/mol/alg/src/similarity_matrix.cc [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/exporter.cc.o -c /<>/modules/gfx/src/exporter.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -c /<>/modules/mol/alg/src/accessibility.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -c /<>/modules/mol/alg/src/sec_struct.cc [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -c /<>/modules/gfx/src/collada_exporter.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -c /<>/modules/mol/alg/src/nonstandard.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/molck.cc.o -c /<>/modules/mol/alg/src/molck.cc [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color.cc.o -c /<>/modules/gfx/src/color.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -c /<>/modules/mol/alg/src/find_membrane.cc [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/primitives.cc.o -c /<>/modules/gfx/src/primitives.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -c /<>/modules/mol/alg/src/entity_to_density.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/entity.cc.o -c /<>/modules/gfx/src/entity.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -c /<>/modules/gfx/src/symmetry_node.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_node.cc.o -c /<>/modules/gfx/src/gfx_node.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_object.cc.o -c /<>/modules/gfx/src/gfx_object.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -c /<>/modules/gfx/src/gfx_prim.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -c /<>/modules/gfx/src/gfx_test_object.cc [ 38%] Linking CXX shared library ../../../../stage/lib/libost_mol_alg.so cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/atom_scattering_properties.txt /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/atom_scattering_properties.txt cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/stereo_chemical_props.txt /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/stereo_chemical_props.txt cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_mol_alg.so.2.0 -o ../../../../stage/lib/libost_mol_alg.so.2.0.0 CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o CMakeFiles/ost_mol_alg.dir/molck.cc.o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: /usr/lib/arm-linux-gnueabihf/libboost_program_options.so /usr/lib/arm-linux-gnueabihf/libboost_thread.so ../../../../stage/lib/libost_img_alg.so.2.0.0 ../../../../stage/lib/libost_seq_alg.so.2.0.0 ../../../../stage/lib/libost_conop.so.2.0.0 ../../../../stage/lib/libost_img.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libfftw3f_threads.so ../../../../stage/lib/libost_db.so.2.0.0 ../../../../stage/lib/libost_seq.so.2.0.0 ../../../../stage/lib/libost_mol.so.2.0.0 ../../../../stage/lib/libost_info.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so ../../../../stage/lib/libost_base.so.2.0.0 ../../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libsqlite3.so [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/input.cc.o -c /<>/modules/gfx/src/input.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/prim_list.cc.o -c /<>/modules/gfx/src/prim_list.cc cd /<>/obj-arm-linux-gnueabihf/modules/mol/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol_alg.so.2.0.0 ../../../../stage/lib/libost_mol_alg.so.2.0 ../../../../stage/lib/libost_mol_alg.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 38%] Built target ost_mol_alg make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/img/alg/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/img/alg/pymod /<>/obj-arm-linux-gnueabihf/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake --color= Scanning dependencies of target _ost_img_alg make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 38%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -c /<>/modules/img/alg/pymod/wrap_alg.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/scene.cc.o -c /<>/modules/gfx/src/scene.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/selection.cc.o -c /<>/modules/gfx/src/selection.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/surface.cc.o -c /<>/modules/gfx/src/surface.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gradient.cc.o -c /<>/modules/gfx/src/gradient.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -c /<>/modules/gfx/src/gradient_manager.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/vertex_array.cc.o -c /<>/modules/gfx/src/vertex_array.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -c /<>/modules/gfx/src/vertex_array_helper.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/material.cc.o -c /<>/modules/gfx/src/material.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/povray.cc.o -c /<>/modules/gfx/src/povray.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -c /<>/modules/gfx/src/gost_exporter.cc /<>/modules/gfx/src/vertex_array.cc:1311:8: warning: ‘geom::Vec3 ost::gfx::{anonymous}::make_aaline_edge(const geom::Vec2&, const geom::Vec2&, float)’ defined but not used [-Wunused-function] 1311 | Vec3 make_aaline_edge(const Vec2& c1, const Vec2& c0, float s) | ^~~~~~~~~~~~~~~~ /<>/modules/gfx/src/vertex_array.cc:1239:8: warning: ‘void ost::gfx::{anonymous}::render_aalines(ost::gfx::{anonymous}::AALineList&, float, float)’ defined but not used [-Wunused-function] 1239 | void render_aalines(AALineList& line_list, float w, float r) | ^~~~~~~~~~~~~~ [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/texture.cc.o -c /<>/modules/gfx/src/texture.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -c /<>/modules/gfx/src/color_ops/color_op.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -c /<>/modules/gfx/src/color_ops/by_element_color_op.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -c /<>/modules/gfx/src/color_ops/by_chain_color_op.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -c /<>/modules/gfx/src/color_ops/uniform_color_op.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -c /<>/modules/gfx/src/color_ops/gradient_color_op.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -c /<>/modules/gfx/src/color_ops/entity_view_color_op.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -c /<>/modules/gfx/src/color_ops/basic_gradient_color_op.cc [ 40%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -c /<>/modules/img/alg/pymod/export_filter.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -c /<>/modules/gfx/src/color_ops/gradient_level_color_op.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -c /<>/modules/gfx/src/impl/entity_renderer.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -c /<>/modules/gfx/src/impl/entity_detail.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -c /<>/modules/gfx/src/impl/cartoon_renderer.cc [ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -c /<>/modules/gfx/src/impl/custom_renderer.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -c /<>/modules/gfx/src/impl/cpk_renderer.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -c /<>/modules/gfx/src/impl/debug_renderer.cc [ 41%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -c /<>/modules/img/alg/pymod/export_normalizer.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -c /<>/modules/gfx/src/impl/simple_renderer.cc [ 41%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -c /<>/modules/img/alg/pymod/export_transcendentals.cc [ 41%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -c /<>/modules/img/alg/pymod/export_polar.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -c /<>/modules/gfx/src/impl/sline_renderer.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -c /<>/modules/gfx/src/impl/line_trace_renderer.cc [ 41%] Linking CXX shared module ../../../../stage/lib/python3.8/dist-packages/ost/img/alg/_ost_img_alg.so cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../stage/lib/python3.8/dist-packages/ost/img/alg/_ost_img_alg.so CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../../stage/lib/libost_img_alg.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libpython3.8.so /usr/lib/arm-linux-gnueabihf/libboost_python38.so /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.0.0 ../../../../stage/lib/libost_info.so.2.0.0 ../../../../stage/lib/libost_base.so.2.0.0 ../../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -c /<>/modules/gfx/src/impl/backbone_trace.cc cd /<>/obj-arm-linux-gnueabihf/modules/img/alg/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/img/alg/pymod/__init__.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/img/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 41%] Built target _ost_img_alg make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/seq/alg/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/seq/alg/pymod /<>/obj-arm-linux-gnueabihf/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake --color= Scanning dependencies of target _ost_seq_alg make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 41%] Building CXX object modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/seq/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_alg_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -c /<>/modules/seq/alg/pymod/wrap_seq_alg.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -c /<>/modules/gfx/src/impl/connect_renderer_base.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -c /<>/modules/gfx/src/impl/trace_renderer_base.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -c /<>/modules/gfx/src/impl/mapped_property.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -c /<>/modules/gfx/src/impl/tabulated_trig.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -c /<>/modules/gfx/src/impl/trace_renderer.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -c /<>/modules/gfx/src/impl/fast_spheres.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -c /<>/modules/gfx/src/render_options/render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -c /<>/modules/gfx/src/render_options/line_render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o -c /<>/modules/gfx/src/render_options/custom_render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o -c /<>/modules/gfx/src/render_options/cpk_render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o -c /<>/modules/gfx/src/render_options/simple_render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o -c /<>/modules/gfx/src/render_options/sline_render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o -c /<>/modules/gfx/src/render_options/line_trace_render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o -c /<>/modules/gfx/src/render_options/cartoon_render_options.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o -c /<>/modules/gfx/src/render_options/trace_render_options.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -c /<>/modules/gfx/src/color_ops/map_handle_color_op.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/map_iso.cc.o -c /<>/modules/gfx/src/map_iso.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_slab.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/map_slab.cc.o -c /<>/modules/gfx/src/map_slab.cc during RTL pass: reload /<>/modules/seq/alg/pymod/wrap_seq_alg.cc: In function ‘void export_contact_prediction()’: /<>/modules/seq/alg/pymod/wrap_seq_alg.cc:167:1: internal compiler error: Segmentation fault 167 | } | ^ Please submit a full bug report, with preprocessed source if appropriate. See for instructions. [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o -c /<>/modules/gfx/src/impl/map_iso_gen.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o -c /<>/modules/gfx/src/impl/map_iso_gen_s.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o -c /<>/modules/gfx/src/impl/map_iso_gen_o.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -c /<>/modules/gfx/src/impl/map_octree.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -c /<>/modules/gfx/src/impl/octree_isocont.cc [ 44%] Linking CXX shared library ../../../stage/lib/libost_gfx.so cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/test_texture.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/textures/test_texture.png cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/glyph_texture.png /<>/obj-arm-linux-gnueabihf/stage/share/openstructure/textures/glyph_texture.png cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_gfx.so.2.0 -o ../../../stage/lib/libost_gfx.so.2.0.0 CMakeFiles/ost_gfx.dir/bitmap_io.cc.o CMakeFiles/ost_gfx.dir/exporter.cc.o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o CMakeFiles/ost_gfx.dir/color.cc.o CMakeFiles/ost_gfx.dir/primitives.cc.o CMakeFiles/ost_gfx.dir/entity.cc.o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o CMakeFiles/ost_gfx.dir/gfx_node.cc.o CMakeFiles/ost_gfx.dir/gfx_object.cc.o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o CMakeFiles/ost_gfx.dir/input.cc.o CMakeFiles/ost_gfx.dir/prim_list.cc.o CMakeFiles/ost_gfx.dir/scene.cc.o CMakeFiles/ost_gfx.dir/selection.cc.o CMakeFiles/ost_gfx.dir/surface.cc.o CMakeFiles/ost_gfx.dir/gradient.cc.o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o CMakeFiles/ost_gfx.dir/vertex_array.cc.o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o CMakeFiles/ost_gfx.dir/material.cc.o CMakeFiles/ost_gfx.dir/povray.cc.o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o CMakeFiles/ost_gfx.dir/texture.cc.o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o CMakeFiles/ost_gfx.dir/map_iso.cc.o CMakeFiles/ost_gfx.dir/map_slab.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../stage/lib/libost_conop.so.2.0.0 ../../../stage/lib/libost_img_alg.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libOpenGL.so /usr/lib/arm-linux-gnueabihf/libGLX.so /usr/lib/arm-linux-gnueabihf/libGLU.so /usr/lib/arm-linux-gnueabihf/libpng.so /usr/lib/arm-linux-gnueabihf/libz.so ../../../stage/lib/libost_db.so.2.0.0 ../../../stage/lib/libost_seq.so.2.0.0 ../../../stage/lib/libost_mol.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so /usr/lib/arm-linux-gnueabihf/libsqlite3.so ../../../stage/lib/libost_img.so.2.0.0 ../../../stage/lib/libost_info.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 ../../../stage/lib/libost_base.so.2.0.0 ../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libfftw3f_threads.so cd /<>/obj-arm-linux-gnueabihf/modules/gfx/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gfx.so.2.0.0 ../../../stage/lib/libost_gfx.so.2.0 ../../../stage/lib/libost_gfx.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 44%] Built target ost_gfx make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/bindings/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/io/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/io/src /<>/obj-arm-linux-gnueabihf/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake --color= cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules/db/pymod /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/modules/db/pymod /<>/obj-arm-linux-gnueabihf/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake --color= Scanning dependencies of target _ost_bindings Scanning dependencies of target _ost_db make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 44%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o [ 44%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -c /<>/modules/bindings/pymod/export_tmalign.cc cd /<>/obj-arm-linux-gnueabihf/modules/db/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_db.dir/export_linear_db.cc.o -c /<>/modules/db/pymod/export_linear_db.cc Scanning dependencies of target ost_io make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/io_manager.cc.o -c /<>/modules/io/src/io_manager.cc [ 44%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -c /<>/modules/bindings/pymod/wrap_bindings.cc [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/convert.cc.o -c /<>/modules/io/src/convert.cc The bug is not reproducible, so it is likely a hardware or OS problem. make[3]: *** [modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make:66: modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o] Error 1 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[2]: *** [CMakeFiles/Makefile2:6388: modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/all] Error 2 make[2]: *** Waiting for unfinished jobs.... [ 44%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/db/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -I/usr/include/python3.8 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_db.dir/wrap_db.cc.o -c /<>/modules/db/pymod/wrap_db.cc /<>/modules/db/pymod/export_linear_db.cc: In function ‘String {anonymous}::WrapGetCharacters(ost::db::LinearCharacterContainerPtr, boost::python::tuple&)’: /<>/modules/db/pymod/export_linear_db.cc:125:18: warning: ‘*((void*)& +16)’ may be used uninitialized in this function [-Wmaybe-uninitialized] 125 | p_range.second = extract(range[1]); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/db/pymod/export_linear_db.cc:124:17: warning: ‘*((void*)& +16)’ may be used uninitialized in this function [-Wmaybe-uninitialized] 124 | p_range.first = extract(range[0]); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/db/pymod/export_linear_db.cc: In function ‘void {anonymous}::WrapClearCharacterRange(ost::db::LinearCharacterContainerPtr, boost::python::tuple)’: /<>/modules/db/pymod/export_linear_db.cc:115:18: warning: ‘*((void*)& +16)’ may be used uninitialized in this function [-Wmaybe-uninitialized] 115 | p_range.second = extract(range[1]); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/db/pymod/export_linear_db.cc:114:17: warning: ‘*((void*)& +16)’ may be used uninitialized in this function [-Wmaybe-uninitialized] 114 | p_range.first = extract(range[0]); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/db/pymod/export_linear_db.cc: In function ‘void {anonymous}::WrapClearPositionRange(ost::db::LinearPositionContainerPtr, boost::python::tuple&)’: /<>/modules/db/pymod/export_linear_db.cc:136:18: warning: ‘*((void*)& +16)’ may be used uninitialized in this function [-Wmaybe-uninitialized] 136 | p_range.second = extract(range[1]); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/db/pymod/export_linear_db.cc:135:17: warning: ‘*((void*)& +16)’ may be used uninitialized in this function [-Wmaybe-uninitialized] 135 | p_range.first = extract(range[0]); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/db/pymod/export_linear_db.cc: In function ‘void {anonymous}::WrapGetPositions(ost::db::LinearPositionContainerPtr, boost::python::tuple&, geom::Vec3List&)’: /<>/modules/db/pymod/export_linear_db.cc:146:18: warning: ‘*((void*)& +16)’ may be used uninitialized in this function [-Wmaybe-uninitialized] 146 | p_range.second = extract(range[1]); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/db/pymod/export_linear_db.cc:145:17: warning: ‘*((void*)& +16)’ may be used uninitialized in this function [-Wmaybe-uninitialized] 145 | p_range.first = extract(range[0]); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/io/src/convert.cc: In static member function ‘static float ost::io::{anonymous}::ConvertHelper<1, 2, float>::Convert(const float&)’: /<>/modules/io/src/convert.cc:346:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 346 | reinterpret_cast(&result)[0]=reinterpret_cast(&tmp)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/io/src/convert.cc:347:52: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | reinterpret_cast(&result)[1]=reinterpret_cast(&tmp)[0]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/io/src/convert.cc: In static member function ‘static void ost::io::{anonymous}::ConvertHelper<1, 2, float>::ConvertIP(float*)’: /<>/modules/io/src/convert.cc:355:50: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 355 | reinterpret_cast(value)[1]=reinterpret_cast(&tmp)[0]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/io/src/convert.cc: In static member function ‘static float ost::io::{anonymous}::ConvertHelper<2, 1, float>::Convert(const float&)’: /<>/modules/io/src/convert.cc:367:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 367 | reinterpret_cast(&tmp)[0]=reinterpret_cast(&value)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/io/src/convert.cc: In static member function ‘static void ost::io::{anonymous}::ConvertHelper<2, 1, float>::ConvertIP(float*)’: /<>/modules/io/src/convert.cc:375:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 375 | reinterpret_cast(&tmp)[0]=reinterpret_cast(value)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/io_utils.cc.o -c /<>/modules/io/src/io_utils.cc [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o -c /<>/modules/io/src/mol/entity_io_crd_handler.cc In file included from /usr/include/boost/preprocessor/iteration/detail/iter/forward1.hpp:52, from /usr/include/boost/python/object/pointer_holder.hpp:60, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/db/pymod/export_linear_db.cc:21: /usr/include/boost/python/object/pointer_holder.hpp: In constructor ‘boost::python::objects::pointer_holder::pointer_holder(PyObject*, A0) [with A0 = boost::reference_wrapper; Pointer = boost::shared_ptr; Value = ost::db::LinearCharacterContainer]’: /usr/include/boost/python/object/pointer_holder.hpp:194:5: note: parameter passing for argument of type ‘boost::reference_wrapper’ changed in GCC 7.1 194 | # endif | ^~~ /usr/include/boost/python/object/pointer_holder.hpp: In constructor ‘boost::python::objects::pointer_holder::pointer_holder(PyObject*, A0) [with A0 = boost::reference_wrapper; Pointer = boost::shared_ptr; Value = ost::db::LinearPositionContainer]’: /usr/include/boost/python/object/pointer_holder.hpp:194:5: note: parameter passing for argument of type ‘boost::reference_wrapper’ changed in GCC 7.1 In file included from /usr/include/c++/10/memory:66, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/detail/prologue.hpp:17, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /<>/modules/db/pymod/export_linear_db.cc:21: /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = ost::db::AssemblyInfo*; bool _TrivialValueTypes = false]’: /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static PyObject* boost::python::converter::as_to_python_function::convert(const void*) [with T = ost::db::LinearIndexer; ToPython = boost::python::objects::class_cref_wrapper, ost::db::LinearIndexer> > >]’: /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | && __is_trivial(_ValueType2) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | && __assignable>:: | ~~~~~~~~~~~~~~~~~~ 150 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Linking CXX shared module ../../../stage/lib/python3.8/dist-packages/ost/bindings/_ost_bindings.so cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_bindings.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../stage/lib/python3.8/dist-packages/ost/bindings/_ost_bindings.so CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../stage/lib/libost_bindings.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libpython3.8.so /usr/lib/arm-linux-gnueabihf/libboost_python38.so ../../../stage/lib/libost_seq.so.2.0.0 ../../../stage/lib/libost_mol.so.2.0.0 ../../../stage/lib/libost_info.so.2.0.0 ../../../stage/lib/libost_base.so.2.0.0 ../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/__init__.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/lga.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./lga.pyc\",\"lga.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/hbplus.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./hbplus.pyc\",\"hbplus.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/msms.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./msms.pyc\",\"msms.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/tmtools.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./tmtools.pyc\",\"tmtools.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/dssp.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./dssp.pyc\",\"dssp.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/clustalw.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./clustalw.pyc\",\"clustalw.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/utils.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./utils.pyc\",\"utils.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/naccess.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./naccess.pyc\",\"naccess.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/hhblits.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./hhblits.pyc\",\"hhblits.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/blast.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./blast.pyc\",\"blast.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/cadscore.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./cadscore.pyc\",\"cadscore.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/kclust.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./kclust.pyc\",\"kclust.py\",doraise=True)" cd /<>/obj-arm-linux-gnueabihf/modules/bindings/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/ialign.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/bindings/./ialign.pyc\",\"ialign.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 44%] Built target _ost_bindings [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o -c /<>/modules/io/src/mol/entity_io_pqr_handler.cc [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o -c /<>/modules/io/src/mol/entity_io_mae_handler.cc [ 45%] Linking CXX shared module ../../../stage/lib/python3.8/dist-packages/ost/db/_ost_db.so cd /<>/obj-arm-linux-gnueabihf/modules/db/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_db.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../stage/lib/python3.8/dist-packages/ost/db/_ost_db.so CMakeFiles/_ost_db.dir/export_linear_db.cc.o CMakeFiles/_ost_db.dir/wrap_db.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../stage/lib/libost_db.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libpython3.8.so /usr/lib/arm-linux-gnueabihf/libboost_python38.so /usr/lib/arm-linux-gnueabihf/libsqlite3.so ../../../stage/lib/libost_seq.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.0.0 ../../../stage/lib/libost_info.so.2.0.0 ../../../stage/lib/libost_base.so.2.0.0 ../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 cd /<>/obj-arm-linux-gnueabihf/modules/db/pymod && /usr/bin/python3.8 -c "import py_compile;py_compile.compile(\"/<>/modules/db/pymod/__init__.py\",\"/<>/obj-arm-linux-gnueabihf/stage/lib/python3.8/dist-packages/ost/db/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 45%] Built target _ost_db [ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -c /<>/modules/io/src/mol/pdb_reader.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -c /<>/modules/io/src/mol/entity_io_pdb_handler.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -c /<>/modules/io/src/mol/pdb_writer.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -c /<>/modules/io/src/mol/entity_io_sdf_handler.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -c /<>/modules/io/src/mol/entity_io_mmcif_handler.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -c /<>/modules/io/src/mol/sdf_reader.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -c /<>/modules/io/src/mol/sdf_writer.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/save_entity.cc.o -c /<>/modules/io/src/mol/save_entity.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/load_entity.cc.o -c /<>/modules/io/src/mol/load_entity.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -c /<>/modules/io/src/mol/surface_io_msms_handler.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/load_surface.cc.o -c /<>/modules/io/src/mol/load_surface.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -c /<>/modules/io/src/mol/chemdict_parser.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/io_profile.cc.o -c /<>/modules/io/src/mol/io_profile.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -c /<>/modules/io/src/mol/dcd_io.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/star_parser.cc.o -c /<>/modules/io/src/mol/star_parser.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -c /<>/modules/io/src/mol/mmcif_reader.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -c /<>/modules/io/src/mol/mmcif_info.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -c /<>/modules/io/src/mol/pdb_str.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o -c /<>/modules/io/src/mol/stereochemical_params_reader.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o -c /<>/modules/io/src/seq/clustal_io_handler.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/load.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/load.cc.o -c /<>/modules/io/src/seq/load.cc [ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/save.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/save.cc.o -c /<>/modules/io/src/seq/save.cc [ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o -c /<>/modules/io/src/seq/fasta_io_handler.cc [ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o -c /<>/modules/io/src/seq/pir_io_handler.cc [ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o -c /<>/modules/io/src/seq/promod_io_handler.cc [ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o -c /<>/modules/io/src/seq/hhm_io_handler.cc [ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -c /<>/modules/io/src/seq/pssm_io_handler.cc [ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/load_map.cc.o -c /<>/modules/io/src/img/load_map.cc [ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -c /<>/modules/io/src/img/map_io_dx_handler.cc [ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -c /<>/modules/io/src/img/map_io_spi_handler.cc [ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -c /<>/modules/io/src/img/map_io_situs_handler.cc [ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -c /<>/modules/io/src/img/map_io_mrc_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -c /<>/modules/io/src/img/map_io_dm3_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -c /<>/modules/io/src/img/map_io_tiff_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -c /<>/modules/io/src/img/map_io_dat_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -c /<>/modules/io/src/img/map_io_ipl_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -c /<>/modules/io/src/img/map_io_jpk_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -c /<>/modules/io/src/img/map_io_nanoscope_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -c /<>/modules/io/src/img/map_io_png_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -c /<>/modules/io/src/img/map_io_df3_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/image_format.cc.o -c /<>/modules/io/src/img/image_format.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/<>/obj-arm-linux-gnueabihf/stage/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -c /<>/modules/io/src/img/tiff_util.cc [ 51%] Linking CXX shared library ../../../stage/lib/libost_io.so cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libost_io.so.2.0 -o ../../../stage/lib/libost_io.so.2.0.0 CMakeFiles/ost_io.dir/io_manager.cc.o CMakeFiles/ost_io.dir/convert.cc.o CMakeFiles/ost_io.dir/io_utils.cc.o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o CMakeFiles/ost_io.dir/mol/save_entity.cc.o CMakeFiles/ost_io.dir/mol/load_entity.cc.o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o CMakeFiles/ost_io.dir/mol/load_surface.cc.o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o CMakeFiles/ost_io.dir/mol/io_profile.cc.o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o CMakeFiles/ost_io.dir/mol/star_parser.cc.o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o CMakeFiles/ost_io.dir/seq/load.cc.o CMakeFiles/ost_io.dir/seq/save.cc.o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o CMakeFiles/ost_io.dir/img/load_map.cc.o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o CMakeFiles/ost_io.dir/img/image_format.cc.o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -L/<>/obj-arm-linux-gnueabihf/stage/lib -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/stage/lib: ../../../stage/lib/libost_mol_alg.so.2.0.0 ../../../stage/lib/libost_img_alg.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so /usr/lib/arm-linux-gnueabihf/libtiff.so /usr/lib/arm-linux-gnueabihf/libpng.so /usr/lib/arm-linux-gnueabihf/libz.so ../../../stage/lib/libost_conop.so.2.0.0 ../../../stage/lib/libost_db.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libsqlite3.so ../../../stage/lib/libost_img.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libfftw3f_threads.so /usr/lib/arm-linux-gnueabihf/libboost_program_options.so /usr/lib/arm-linux-gnueabihf/libboost_thread.so ../../../stage/lib/libost_seq_alg.so.2.0.0 ../../../stage/lib/libost_seq.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.0.0 ../../../stage/lib/libost_info.so.2.0.0 ../../../stage/lib/libost_base.so.2.0.0 ../../../stage/lib/libost_geom.so.2.0.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so /usr/lib/arm-linux-gnueabihf/libboost_system.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Gui.so.5.14.2 /usr/lib/arm-linux-gnueabihf/libQt5Core.so.5.14.2 cd /<>/obj-arm-linux-gnueabihf/modules/io/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_io.so.2.0.0 ../../../stage/lib/libost_io.so.2.0 ../../../stage/lib/libost_io.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 51%] Built target ost_io make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[1]: *** [Makefile:155: all] Error 2 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_auto_build: error: cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" returned exit code 2 make: *** [debian/rules:4: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-09-30T19:02:22Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 1479 Distribution: groovy Fail-Stage: build Host Architecture: armhf Install-Time: 130 Job: openstructure_2.0.0-3.dsc Machine Architecture: arm64 Package: openstructure Package-Time: 1616 Source-Version: 2.0.0-3 Space: n/a Status: attempted Version: 2.0.0-3 -------------------------------------------------------------------------------- Finished at 2020-09-30T19:02:22Z Build needed 00:26:56, no disk space E: Build failure (dpkg-buildpackage died) RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-20036112 Scanning for processes to kill in build PACKAGEBUILD-20036112