https://launchpad.net/ubuntu/+archive/test-rebuild-20200925-groovy/+build/20062087 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-030 4.15.0-118-generic #119-Ubuntu SMP Tue Sep 8 12:21:56 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 2 Oct 04:13:59 ntpdate[1653]: adjust time server 10.211.37.1 offset -0.000071 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-20062087 --image-type chroot /home/buildd/filecache-default/3ff5711ac2503d035c89289b694a465e92f31811 Creating target for build PACKAGEBUILD-20062087 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-20062087 Starting target for build PACKAGEBUILD-20062087 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-20062087 'deb http://ftpmaster.internal/ubuntu groovy main universe' Overriding sources.list in build-PACKAGEBUILD-20062087 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-20062087 Updating target for build PACKAGEBUILD-20062087 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main arm64 Packages [1343 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main Translation-en [506 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/universe arm64 Packages [12.3 MB] Get:5 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5259 kB] Fetched 19.7 MB in 8s (2476 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi7 libjson-c4 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libffi8ubuntu1 libgssapi-krb5-2 libjson-c5 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnsl-dev libnsl2 libnss-nis libnss-nisplus libtirpc-common libtirpc-dev libtirpc3 rpcsvc-proto The following packages will be upgraded: apt base-files binutils binutils-aarch64-linux-gnu binutils-common bsdutils build-essential ca-certificates coreutils cpp cpp-10 debianutils dpkg dpkg-dev g++ g++-10 gcc gcc-10 gcc-10-base libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libgcc-10-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libip4tc2 libitm1 liblsan0 liblzma5 libmount1 libmpc3 libmpfr6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpng16-16 libprocps8 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev mount openssl procps sensible-utils systemd systemd-sysv systemd-timesyncd util-linux xz-utils zlib1g 84 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 61.2 MB of archives. After this operation, 3471 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main arm64 libkrb5support0 arm64 1.17-10 [30.2 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main arm64 libk5crypto3 arm64 1.17-10 [80.3 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main arm64 libkeyutils1 arm64 1.6.1-2ubuntu1 [9932 B] Get:4 http://ftpmaster.internal/ubuntu groovy/main arm64 libssl1.1 arm64 1.1.1f-1ubuntu4 [1160 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main arm64 libkrb5-3 arm64 1.17-10 [312 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main arm64 libgssapi-krb5-2 arm64 1.17-10 [113 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main arm64 libtirpc-common all 1.2.6-1build1 [7472 B] Get:8 http://ftpmaster.internal/ubuntu groovy/main arm64 libtirpc3 arm64 1.2.6-1build1 [73.5 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main arm64 libnsl2 arm64 1.3.0-0ubuntu3 [37.0 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main arm64 libnss-nis arm64 3.1-0ubuntu4 [23.8 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main arm64 libnss-nisplus arm64 1.3-0ubuntu4 [20.7 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main arm64 libc6 arm64 2.32-0ubuntu3 [2252 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main arm64 libc-dev-bin arm64 2.32-0ubuntu3 [28.7 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main arm64 libc6-dev arm64 2.32-0ubuntu3 [1726 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu3 [59.8 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main arm64 libtirpc-dev arm64 1.2.6-1build1 [185 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main arm64 libnsl-dev arm64 1.3.0-0ubuntu3 [65.6 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main arm64 libc-bin arm64 2.32-0ubuntu3 [504 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main arm64 linux-libc-dev arm64 5.8.0-20.21 [1135 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main arm64 libcc1-0 arm64 10.2.0-11ubuntu1 [37.0 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main arm64 libctf0 arm64 2.35.1-1ubuntu1 [44.0 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main arm64 libctf-nobfd0 arm64 2.35.1-1ubuntu1 [44.8 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main arm64 binutils-aarch64-linux-gnu arm64 2.35.1-1ubuntu1 [2026 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main arm64 libbinutils arm64 2.35.1-1ubuntu1 [484 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main arm64 binutils-common arm64 2.35.1-1ubuntu1 [212 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main arm64 binutils arm64 2.35.1-1ubuntu1 [3356 B] Get:27 http://ftpmaster.internal/ubuntu groovy/main arm64 gcc-10-base arm64 10.2.0-11ubuntu1 [19.5 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main arm64 libgcc-s1 arm64 10.2.0-11ubuntu1 [34.6 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main arm64 libgomp1 arm64 10.2.0-11ubuntu1 [94.1 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main arm64 libitm1 arm64 10.2.0-11ubuntu1 [24.3 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main arm64 libatomic1 arm64 10.2.0-11ubuntu1 [9888 B] Get:32 http://ftpmaster.internal/ubuntu groovy/main arm64 libasan6 arm64 10.2.0-11ubuntu1 [319 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main arm64 liblsan0 arm64 10.2.0-11ubuntu1 [130 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main arm64 libtsan0 arm64 10.2.0-11ubuntu1 [303 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main arm64 libubsan1 arm64 10.2.0-11ubuntu1 [127 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main arm64 g++-10 arm64 10.2.0-11ubuntu1 [8097 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main arm64 libstdc++-10-dev arm64 10.2.0-11ubuntu1 [1719 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main arm64 libgcc-10-dev arm64 10.2.0-11ubuntu1 [910 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main arm64 gcc-10 arm64 10.2.0-11ubuntu1 [14.6 MB] Get:40 http://ftpmaster.internal/ubuntu groovy/main arm64 cpp-10 arm64 10.2.0-11ubuntu1 [7141 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main arm64 libstdc++6 arm64 10.2.0-11ubuntu1 [464 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main arm64 zlib1g arm64 1:1.2.11.dfsg-2ubuntu2 [51.1 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main arm64 libgmp10 arm64 2:6.2.0+dfsg-6ubuntu1 [216 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main arm64 libmpfr6 arm64 4.1.0-3 [216 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main arm64 libmpc3 arm64 1.2.0~rc1-1 [42.5 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main arm64 libzstd1 arm64 1.4.5+dfsg-4 [269 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main arm64 base-files arm64 11ubuntu13 [60.4 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main arm64 bsdutils arm64 1:2.36-3ubuntu1 [82.8 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main arm64 libselinux1 arm64 3.1-2 [64.9 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main arm64 coreutils arm64 8.32-3ubuntu1 [1257 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main arm64 debianutils arm64 4.11.1 [85.2 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main arm64 dpkg arm64 1.20.5ubuntu2 [1156 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main arm64 util-linux arm64 2.36-3ubuntu1 [1028 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main arm64 liblzma5 arm64 5.2.4-1ubuntu1 [87.9 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main arm64 libffi8ubuntu1 arm64 3.4~20200819gead65ca871-0ubuntu3 [17.4 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main arm64 libp11-kit0 arm64 0.23.21-2build1 [182 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main arm64 libgnutls30 arm64 3.6.15-4ubuntu2 [698 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main arm64 systemd-sysv arm64 246.6-1ubuntu1 [10.3 kB] Get:59 http://ftpmaster.internal/ubuntu groovy/main arm64 systemd-timesyncd arm64 246.6-1ubuntu1 [26.3 kB] Get:60 http://ftpmaster.internal/ubuntu groovy/main arm64 libapparmor1 arm64 3.0.0~beta1-0ubuntu6 [35.4 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main arm64 libaudit-common all 1:2.8.5-3ubuntu1 [4076 B] Get:62 http://ftpmaster.internal/ubuntu groovy/main arm64 libaudit1 arm64 1:2.8.5-3ubuntu1 [38.3 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main arm64 libcap2 arm64 1:2.43-1 [17.2 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main arm64 libjson-c5 arm64 0.15-1 [29.9 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main arm64 libblkid1 arm64 2.36-3ubuntu1 [126 kB] Get:66 http://ftpmaster.internal/ubuntu groovy/main arm64 libuuid1 arm64 2.36-3ubuntu1 [21.2 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main arm64 libcryptsetup12 arm64 2:2.3.3-1ubuntu6 [176 kB] Get:68 http://ftpmaster.internal/ubuntu groovy/main arm64 libip4tc2 arm64 1.8.5-3ubuntu1 [18.7 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main arm64 libmount1 arm64 2.36-3ubuntu1 [139 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main arm64 libpam0g arm64 1.3.1-5ubuntu6 [54.6 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main arm64 mount arm64 2.36-3ubuntu1 [117 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main arm64 systemd arm64 246.6-1ubuntu1 [3840 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/main arm64 libsystemd0 arm64 246.6-1ubuntu1 [252 kB] Get:74 http://ftpmaster.internal/ubuntu groovy/main arm64 libudev1 arm64 246.6-1ubuntu1 [62.4 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/main arm64 libapt-pkg6.0 arm64 2.1.10 [768 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/main arm64 apt arm64 2.1.10 [1247 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/main arm64 libpam-modules-bin arm64 1.3.1-5ubuntu6 [35.9 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main arm64 libpam-modules arm64 1.3.1-5ubuntu6 [242 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.6ubuntu3 [620 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main arm64 libpam-runtime all 1.3.1-5ubuntu6 [37.3 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/main arm64 libsemanage-common all 3.1-1 [10.2 kB] Get:82 http://ftpmaster.internal/ubuntu groovy/main arm64 libsemanage1 arm64 3.1-1 [80.6 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main arm64 libsmartcols1 arm64 2.36-3ubuntu1 [90.7 kB] Get:84 http://ftpmaster.internal/ubuntu groovy/main arm64 libprocps8 arm64 2:3.3.16-5ubuntu2 [31.2 kB] Get:85 http://ftpmaster.internal/ubuntu groovy/main arm64 procps arm64 2:3.3.16-5ubuntu2 [229 kB] Get:86 http://ftpmaster.internal/ubuntu groovy/main arm64 sensible-utils all 0.0.13 [15.1 kB] Get:87 http://ftpmaster.internal/ubuntu groovy/main arm64 openssl arm64 1.1.1f-1ubuntu4 [600 kB] Get:88 http://ftpmaster.internal/ubuntu groovy/main arm64 ca-certificates all 20200601 [147 kB] Get:89 http://ftpmaster.internal/ubuntu groovy/main arm64 libsqlite3-0 arm64 3.33.0-1 [540 kB] Get:90 http://ftpmaster.internal/ubuntu groovy/main arm64 xz-utils arm64 5.2.4-1ubuntu1 [81.2 kB] Get:91 http://ftpmaster.internal/ubuntu groovy/main arm64 libgdbm6 arm64 1.18.1-5.1 [26.6 kB] Get:92 http://ftpmaster.internal/ubuntu groovy/main arm64 libpng16-16 arm64 1.6.37-3 [175 kB] Get:93 http://ftpmaster.internal/ubuntu groovy/main arm64 g++ arm64 4:10.2.0-1ubuntu1 [1592 B] Get:94 http://ftpmaster.internal/ubuntu groovy/main arm64 gcc arm64 4:10.2.0-1ubuntu1 [5228 B] Get:95 http://ftpmaster.internal/ubuntu groovy/main arm64 cpp arm64 4:10.2.0-1ubuntu1 [27.7 kB] Get:96 http://ftpmaster.internal/ubuntu groovy/main arm64 dpkg-dev all 1.20.5ubuntu2 [758 kB] Get:97 http://ftpmaster.internal/ubuntu groovy/main arm64 libdpkg-perl all 1.20.5ubuntu2 [232 kB] Get:98 http://ftpmaster.internal/ubuntu groovy/main arm64 build-essential arm64 12.8ubuntu3 [4636 B] Get:99 http://ftpmaster.internal/ubuntu groovy/main arm64 libgdbm-compat4 arm64 1.18.1-5.1 [6044 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 61.2 MB in 3s (21.5 MB/s) Selecting previously unselected package libkrb5support0:arm64. (Reading database ... 12777 files and directories currently installed.) Preparing to unpack .../libkrb5support0_1.17-10_arm64.deb ... Unpacking libkrb5support0:arm64 (1.17-10) ... Setting up libkrb5support0:arm64 (1.17-10) ... Selecting previously unselected package libk5crypto3:arm64. (Reading database ... 12782 files and directories currently installed.) Preparing to unpack .../libk5crypto3_1.17-10_arm64.deb ... Unpacking libk5crypto3:arm64 (1.17-10) ... Setting up libk5crypto3:arm64 (1.17-10) ... Selecting previously unselected package libkeyutils1:arm64. (Reading database ... 12787 files and directories currently installed.) Preparing to unpack .../libkeyutils1_1.6.1-2ubuntu1_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.1-2ubuntu1) ... Setting up libkeyutils1:arm64 (1.6.1-2ubuntu1) ... (Reading database ... 12792 files and directories currently installed.) Preparing to unpack .../libssl1.1_1.1.1f-1ubuntu4_arm64.deb ... 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Initializing machine ID from random generator. Removing obsolete conffile /etc/dhcp/dhclient-enter-hooks.d/resolved ... Setting up systemd-timesyncd (246.6-1ubuntu1) ... Setting up systemd-sysv (246.6-1ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... Processing triggers for ca-certificates (20200601) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20062087 arm64 groovy -c chroot:build-PACKAGEBUILD-20062087 --arch=arm64 --dist=groovy --nolog spades_3.13.1+dfsg-2build2.dsc Initiating build PACKAGEBUILD-20062087 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-118-generic #119-Ubuntu SMP Tue Sep 8 12:21:56 UTC 2020 aarch64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-030.buildd +==============================================================================+ | spades 3.13.1+dfsg-2build2 (arm64) Fri, 02 Oct 2020 04:15:55 +0000 | +==============================================================================+ Package: spades Version: 3.13.1+dfsg-2build2 Source Version: 3.13.1+dfsg-2build2 Distribution: groovy Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20062087/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- spades_3.13.1+dfsg-2build2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/spades-PbfLEr/spades-3.13.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/spades-PbfLEr' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-EMSpkr/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-EMSpkr/apt_archive ./ InRelease Get:2 copy:/<>/resolver-EMSpkr/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-EMSpkr/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-EMSpkr/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-EMSpkr/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (28.0 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi7 libjson-c4 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 860 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-EMSpkr/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [860 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 860 B in 0s (35.5 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13027 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), dh-python, cmake, python3-dev, zlib1g-dev, libbz2-dev, libboost-dev, libbam-dev, libbamtools-dev, libhat-trie-dev, libhts-dev, libnlopt-dev, libnlopt-cxx-dev, libssw-dev, python3-yaml, python3-joblib, asciidoctor (>= 1.5.3), bwa, libbwa-dev, lynx Filtered Build-Depends: debhelper-compat (= 12), dh-python, cmake, python3-dev, zlib1g-dev, libbz2-dev, libboost-dev, libbam-dev, libbamtools-dev, libhat-trie-dev, libhts-dev, libnlopt-dev, libnlopt-cxx-dev, libssw-dev, python3-yaml, python3-joblib, asciidoctor (>= 1.5.3), bwa, libbwa-dev, lynx dpkg-deb: building package 'sbuild-build-depends-spades-dummy' in '/<>/resolver-EMSpkr/apt_archive/sbuild-build-depends-spades-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-spades-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-EMSpkr/apt_archive ./ InRelease Get:2 copy:/<>/resolver-EMSpkr/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-EMSpkr/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-EMSpkr/apt_archive ./ Sources [601 B] Get:5 copy:/<>/resolver-EMSpkr/apt_archive ./ Packages [682 B] Fetched 2246 B in 0s (31.1 kB/s) Reading package lists... Reading package lists... Install spades build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi7 libjson-c4 Use 'apt autoremove' to remove them. The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdextrautils bwa cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbam-dev libbamtools-dev libbamtools2.5.1 libboost-dev libboost1.71-dev libbrotli1 libbsd0 libbwa-dev libbz2-dev libcroco3 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libgssapi3-heimdal libhat-trie-dev libhat-trie0 libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu67 libidn11 libjsoncpp1 libkrb5-26-heimdal libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev libnlopt0 libpipeline1 libpsl5 libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librhash0 libroken18-heimdal librtmp1 libruby2.7 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssw-dev libssw0 libsub-override-perl libtool libuchardet0 libuv1 libwind0-heimdal libxml2 libyaml-0-2 lynx lynx-common m4 man-db mime-support po-debconf python3 python3-dev python3-distutils python3-joblib python3-lib2to3 python3-minimal python3-pkg-resources python3-yaml python3.8 python3.8-dev python3.8-minimal rake ruby ruby-asciidoctor ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc samtools cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libbamtools-doc libboost-doc libboost1.71-doc libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev libboost-context1.71-dev libboost-contract1.71-dev libboost-coroutine1.71-dev libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev libboost-filesystem1.71-dev libboost-graph1.71-dev libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev libboost-program-options1.71-dev libboost-python1.71-dev libboost-random1.71-dev libboost-regex1.71-dev libboost-serialization1.71-dev libboost-stacktrace1.71-dev libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev libmpfrc++-dev libntl-dev liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python3.8-venv python3.8-doc binfmt-support ri ruby-dev bundler Recommended packages: bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python3-numpy python3-pytest python3-simplejson python3-psutil zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdextrautils bwa cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbam-dev libbamtools-dev libbamtools2.5.1 libboost-dev libboost1.71-dev libbrotli1 libbsd0 libbwa-dev libbz2-dev libcroco3 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libgssapi3-heimdal libhat-trie-dev libhat-trie0 libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu67 libidn11 libjsoncpp1 libkrb5-26-heimdal libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev libnlopt0 libpipeline1 libpsl5 libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librhash0 libroken18-heimdal librtmp1 libruby2.7 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssw-dev libssw0 libsub-override-perl libtool libuchardet0 libuv1 libwind0-heimdal libxml2 libyaml-0-2 lynx lynx-common m4 man-db mime-support po-debconf python3 python3-dev python3-distutils python3-joblib python3-lib2to3 python3-minimal python3-pkg-resources python3-yaml python3.8 python3.8-dev python3.8-minimal rake ruby ruby-asciidoctor ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration sbuild-build-depends-spades-dummy zlib1g-dev 0 upgraded, 117 newly installed, 0 to remove and 0 not upgraded. Need to get 56.2 MB of archives. After this operation, 325 MB of additional disk space will be used. Get:1 copy:/<>/resolver-EMSpkr/apt_archive ./ sbuild-build-depends-spades-dummy 0.invalid.0 [976 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main arm64 libpython3.8-minimal arm64 3.8.6-1 [712 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main arm64 libexpat1 arm64 2.2.9-1build1 [61.3 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main arm64 python3.8-minimal arm64 3.8.6-1 [1752 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main arm64 python3-minimal arm64 3.8.2-0ubuntu2 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main arm64 mime-support all 3.64ubuntu1 [30.6 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main arm64 libpython3.8-stdlib arm64 3.8.6-1 [1709 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main arm64 python3.8 arm64 3.8.6-1 [376 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main arm64 libpython3-stdlib arm64 3.8.2-0ubuntu2 [7068 B] Get:10 http://ftpmaster.internal/ubuntu groovy/main arm64 python3 arm64 3.8.2-0ubuntu2 [47.6 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main arm64 bsdextrautils arm64 2.36-3ubuntu1 [74.2 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main arm64 libuchardet0 arm64 0.0.7-1 [68.0 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main arm64 groff-base arm64 1.22.4-5 [797 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main arm64 libpipeline1 arm64 1.5.3-1 [26.1 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main arm64 man-db arm64 2.9.3-2 [1100 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main arm64 libmagic-mgc arm64 1:5.38-5 [218 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main arm64 libmagic1 arm64 1:5.38-5 [71.6 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main arm64 file arm64 1:5.38-5 [23.3 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main arm64 libbsd0 arm64 0.10.0-1 [43.7 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main arm64 libelf1 arm64 0.181-1 [43.4 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main arm64 libglib2.0-0 arm64 2.66.0-2 [1219 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main arm64 libicu67 arm64 67.1-4 [8461 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main arm64 libxml2 arm64 2.9.10+dfsg-5build1 [559 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main arm64 libyaml-0-2 arm64 0.2.2-1 [44.4 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main arm64 python3-pkg-resources all 49.3.1-2 [130 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main arm64 python3-yaml arm64 5.3.1-2 [119 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main arm64 gettext-base arm64 0.19.8.1-10build1 [48.2 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main arm64 libpsl5 arm64 0.21.0-1.1 [51.4 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main arm64 libuv1 arm64 1.38.0-2ubuntu2 [74.5 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main arm64 rubygems-integration all 1.17.2 [5284 B] Get:31 http://ftpmaster.internal/ubuntu groovy/main arm64 rake all 13.0.1-4 [61.6 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main arm64 ruby-minitest all 5.13.0-1 [40.9 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main arm64 ruby-net-telnet all 0.1.1-2 [12.6 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main arm64 ruby-power-assert all 1.1.7-1 [11.4 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main arm64 ruby-test-unit all 3.3.5-1 [73.2 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main arm64 ruby-xmlrpc all 0.3.0-2 [23.8 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main arm64 libruby2.7 arm64 2.7.1-3build1 [3381 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main arm64 ruby2.7 arm64 2.7.1-3build1 [95.7 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main arm64 ruby arm64 1:2.7+1 [5412 B] Get:40 http://ftpmaster.internal/ubuntu groovy/universe arm64 ruby-asciidoctor all 2.0.10-2 [166 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/universe arm64 asciidoctor all 2.0.10-2 [40.3 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main arm64 libsigsegv2 arm64 2.12-2build1 [13.7 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main arm64 m4 arm64 1.4.18-4 [194 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main arm64 autoconf all 2.69-11.1 [321 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main arm64 automake all 1:1.16.2-4ubuntu1 [548 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main arm64 autopoint all 0.19.8.1-10build1 [412 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/universe arm64 bwa arm64 0.7.17-5 [189 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main arm64 cmake-data all 3.16.3-3ubuntu2 [1612 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main arm64 libarchive13 arm64 3.4.3-2 [311 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main arm64 libbrotli1 arm64 1.0.9-2 [267 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main arm64 libroken18-heimdal arm64 7.7.0+dfsg-2 [39.4 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main arm64 libasn1-8-heimdal arm64 7.7.0+dfsg-2 [150 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main arm64 libheimbase1-heimdal arm64 7.7.0+dfsg-2 [27.9 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main arm64 libhcrypto4-heimdal arm64 7.7.0+dfsg-2 [84.8 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main arm64 libwind0-heimdal arm64 7.7.0+dfsg-2 [47.2 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main arm64 libhx509-5-heimdal arm64 7.7.0+dfsg-2 [98.6 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main arm64 libkrb5-26-heimdal arm64 7.7.0+dfsg-2 [192 kB] Get:59 http://ftpmaster.internal/ubuntu groovy/main arm64 libheimntlm0-heimdal arm64 7.7.0+dfsg-2 [14.8 kB] Get:60 http://ftpmaster.internal/ubuntu groovy/main arm64 libgssapi3-heimdal arm64 7.7.0+dfsg-2 [88.4 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2 [15.1 kB] Get:62 http://ftpmaster.internal/ubuntu groovy/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2 [48.4 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main arm64 libldap-2.4-2 arm64 2.4.53+dfsg-1ubuntu1 [148 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main arm64 libnghttp2-14 arm64 1.41.0-3 [64.6 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build2 [53.1 kB] Get:66 http://ftpmaster.internal/ubuntu groovy/main arm64 libssh-4 arm64 0.9.4-1ubuntu3 [161 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main arm64 libcurl4 arm64 7.68.0-1ubuntu4 [213 kB] Get:68 http://ftpmaster.internal/ubuntu groovy/main arm64 libjsoncpp1 arm64 1.7.4-3.1ubuntu2 [69.8 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main arm64 librhash0 arm64 1.4.0-1 [112 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main arm64 cmake arm64 3.16.3-3ubuntu2 [3115 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main arm64 libtool all 2.4.6-14 [161 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main arm64 dh-autoreconf all 19 [16.1 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/main arm64 libdebhelper-perl all 13.2.1ubuntu1 [63.6 kB] Get:74 http://ftpmaster.internal/ubuntu groovy/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/main arm64 libsub-override-perl all 0.09-2 [9532 B] Get:76 http://ftpmaster.internal/ubuntu groovy/main arm64 libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/main arm64 dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:78 http://ftpmaster.internal/ubuntu groovy/main arm64 dwz arm64 0.13-5 [134 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main arm64 libcroco3 arm64 0.6.13-1 [77.1 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main arm64 gettext arm64 0.19.8.1-10build1 [850 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:82 http://ftpmaster.internal/ubuntu groovy/main arm64 po-debconf all 1.0.21 [233 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main arm64 debhelper all 13.2.1ubuntu1 [879 kB] Get:84 http://ftpmaster.internal/ubuntu groovy/main arm64 python3-lib2to3 all 3.8.5-1 [75.6 kB] Get:85 http://ftpmaster.internal/ubuntu groovy/main arm64 python3-distutils all 3.8.5-1 [141 kB] Get:86 http://ftpmaster.internal/ubuntu groovy/universe arm64 dh-python all 4.20200925 [92.2 kB] Get:87 http://ftpmaster.internal/ubuntu groovy/universe arm64 libbam-dev arm64 0.1.19-4 [107 kB] Get:88 http://ftpmaster.internal/ubuntu groovy/universe arm64 libbamtools2.5.1 arm64 2.5.1+dfsg-7 [140 kB] Get:89 http://ftpmaster.internal/ubuntu groovy/universe arm64 libbamtools-dev arm64 2.5.1+dfsg-7 [197 kB] Get:90 http://ftpmaster.internal/ubuntu groovy/main arm64 libboost1.71-dev arm64 1.71.0-6ubuntu9 [9070 kB] Get:91 http://ftpmaster.internal/ubuntu groovy/main arm64 libboost-dev arm64 1.71.0.0ubuntu4 [3504 B] Get:92 http://ftpmaster.internal/ubuntu groovy/universe arm64 libbwa-dev arm64 0.7.17-5 [125 kB] Get:93 http://ftpmaster.internal/ubuntu groovy/main arm64 libbz2-dev arm64 1.0.8-4ubuntu2 [31.6 kB] Get:94 http://ftpmaster.internal/ubuntu groovy/main arm64 libcurl3-gnutls arm64 7.68.0-1ubuntu4 [211 kB] Get:95 http://ftpmaster.internal/ubuntu groovy/universe arm64 libdeflate0 arm64 1.6-1 [51.1 kB] Get:96 http://ftpmaster.internal/ubuntu groovy/main arm64 libexpat1-dev arm64 2.2.9-1build1 [103 kB] Get:97 http://ftpmaster.internal/ubuntu groovy/universe arm64 libhat-trie0 arm64 0.1.2-2 [11.2 kB] Get:98 http://ftpmaster.internal/ubuntu groovy/universe arm64 libhat-trie-dev arm64 0.1.2-2 [19.2 kB] Get:99 http://ftpmaster.internal/ubuntu groovy/universe arm64 libhts3 arm64 1.10.2-5 [300 kB] Get:100 http://ftpmaster.internal/ubuntu groovy/main arm64 liblzma-dev arm64 5.2.4-1ubuntu1 [144 kB] Get:101 http://ftpmaster.internal/ubuntu groovy/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2ubuntu2 [154 kB] Get:102 http://ftpmaster.internal/ubuntu groovy/universe arm64 libhts-dev arm64 1.10.2-5 [4709 kB] Get:103 http://ftpmaster.internal/ubuntu groovy/main arm64 libidn11 arm64 1.33-2.4 [46.1 kB] Get:104 http://ftpmaster.internal/ubuntu groovy/universe arm64 libnlopt0 arm64 2.6.1-8ubuntu2 [149 kB] Get:105 http://ftpmaster.internal/ubuntu groovy/universe arm64 libnlopt-dev arm64 2.6.1-8ubuntu2 [29.6 kB] Get:106 http://ftpmaster.internal/ubuntu groovy/universe arm64 libnlopt-cxx0 arm64 2.6.1-8ubuntu2 [168 kB] Get:107 http://ftpmaster.internal/ubuntu groovy/universe arm64 libnlopt-cxx-dev arm64 2.6.1-8ubuntu2 [11.0 kB] Get:108 http://ftpmaster.internal/ubuntu groovy/main arm64 libpython3.8 arm64 3.8.6-1 [1480 kB] Get:109 http://ftpmaster.internal/ubuntu groovy/main arm64 libpython3.8-dev arm64 3.8.6-1 [3349 kB] Get:110 http://ftpmaster.internal/ubuntu groovy/main arm64 libpython3-dev arm64 3.8.2-0ubuntu2 [7236 B] Get:111 http://ftpmaster.internal/ubuntu groovy/universe arm64 libssw0 arm64 1.1-11 [17.7 kB] Get:112 http://ftpmaster.internal/ubuntu groovy/universe arm64 libssw-dev arm64 1.1-11 [19.9 kB] Get:113 http://ftpmaster.internal/ubuntu groovy/universe arm64 lynx-common all 2.9.0dev.5-1 [914 kB] Get:114 http://ftpmaster.internal/ubuntu groovy/main arm64 python3.8-dev arm64 3.8.6-1 [515 kB] Get:115 http://ftpmaster.internal/ubuntu groovy/main arm64 python3-dev arm64 3.8.2-0ubuntu2 [1212 B] Get:116 http://ftpmaster.internal/ubuntu groovy/universe arm64 python3-joblib all 0.14.0-3 [192 kB] Get:117 http://ftpmaster.internal/ubuntu groovy/universe arm64 lynx arm64 2.9.0dev.5-1 [567 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 56.2 MB in 4s (15.7 MB/s) Selecting previously unselected package libpython3.8-minimal:arm64. (Reading database ... 13027 files and directories currently installed.) Preparing to unpack .../libpython3.8-minimal_3.8.6-1_arm64.deb ... Unpacking libpython3.8-minimal:arm64 (3.8.6-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.2.9-1build1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.9-1build1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../python3.8-minimal_3.8.6-1_arm64.deb ... Unpacking python3.8-minimal (3.8.6-1) ... Setting up libpython3.8-minimal:arm64 (3.8.6-1) ... Setting up libexpat1:arm64 (2.2.9-1build1) ... Setting up python3.8-minimal (3.8.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13318 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.8.2-0ubuntu2_arm64.deb ... Unpacking python3-minimal (3.8.2-0ubuntu2) ... Selecting previously unselected package mime-support. 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Setting up libglib2.0-0:arm64 (2.66.0-2) ... No schema files found: doing nothing. Setting up bwa (0.7.17-5) ... Setting up libdebhelper-perl (13.2.1ubuntu1) ... Setting up libbrotli1:arm64 (1.0.9-2) ... Setting up libboost1.71-dev:arm64 (1.71.0-6ubuntu9) ... Setting up libnghttp2-14:arm64 (1.41.0-3) ... Setting up libmagic1:arm64 (1:5.38-5) ... Setting up libdeflate0:arm64 (1.6-1) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up libnlopt0:arm64 (2.6.1-8ubuntu2) ... Setting up rubygems-integration (1.17.2) ... Setting up file (1:5.38-5) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2) ... Setting up ruby-minitest (5.13.0-1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:arm64 (1.38.0-2ubuntu2) ... Setting up libhat-trie0:arm64 (0.1.2-2) ... Setting up libexpat1-dev:arm64 (2.2.9-1build1) ... Setting up ruby-test-unit (3.3.5-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libidn11:arm64 (1.33-2.4) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libsigsegv2:arm64 (2.12-2build1) ... Setting up libbamtools2.5.1:arm64 (2.5.1+dfsg-7) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libbam-dev (0.1.19-4) ... Setting up lynx-common (2.9.0dev.5-1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2) ... Setting up libssh-4:arm64 (0.9.4-1ubuntu3) ... Setting up libroken18-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libbwa-dev (0.7.17-5) ... Setting up libnlopt-cxx0:arm64 (2.6.1-8ubuntu2) ... Setting up liblzma-dev:arm64 (5.2.4-1ubuntu1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2ubuntu2) ... Setting up libhat-trie-dev:arm64 (0.1.2-2) ... Setting up librhash0:arm64 (1.4.0-1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up cmake-data (3.16.3-3ubuntu2) ... Setting up libboost-dev:arm64 (1.71.0.0ubuntu4) ... Setting up libpython3.8-stdlib:arm64 (3.8.6-1) ... Setting up libnlopt-dev:arm64 (2.6.1-8ubuntu2) ... Setting up python3.8 (3.8.6-1) ... Setting up libbsd0:arm64 (0.10.0-1) ... Setting up libelf1:arm64 (0.181-1) ... Setting up libssw0:arm64 (1.1-11) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libxml2:arm64 (2.9.10+dfsg-5build1) ... Setting up libjsoncpp1:arm64 (1.7.4-3.1ubuntu2) ... Setting up libpython3-stdlib:arm64 (3.8.2-0ubuntu2) ... Setting up libheimbase1-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libbz2-dev:arm64 (1.0.8-4ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libssw-dev:arm64 (1.1-11) ... Setting up libtool (2.4.6-14) ... Setting up libarchive13:arm64 (3.4.3-2) ... Setting up libasn1-8-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.2-0ubuntu2) ... Setting up libhcrypto4-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libwind0-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libnlopt-cxx-dev:arm64 (2.6.1-8ubuntu2) ... Setting up libpython3.8:arm64 (3.8.6-1) ... Setting up libbamtools-dev:arm64 (2.5.1+dfsg-7) ... Setting up libcroco3:arm64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up lynx (2.9.0dev.5-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up python3-lib2to3 (3.8.5-1) ... Setting up python3-pkg-resources (49.3.1-2) ... Setting up automake (1:1.16.2-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.8.5-1) ... Setting up dh-python (4.20200925) ... Setting up gettext (0.19.8.1-10build1) ... Setting up python3-joblib (0.14.0-3) ... Setting up libhx509-5-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up python3-yaml (5.3.1-2) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.8-dev:arm64 (3.8.6-1) ... Setting up python3.8-dev (3.8.6-1) ... Setting up libkrb5-26-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libpython3-dev:arm64 (3.8.2-0ubuntu2) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up python3-dev (3.8.2-0ubuntu2) ... Setting up libldap-2.4-2:arm64 (2.4.53+dfsg-1ubuntu1) ... Setting up libcurl3-gnutls:arm64 (7.68.0-1ubuntu4) ... Setting up libcurl4:arm64 (7.68.0-1ubuntu4) ... Setting up libhts3:arm64 (1.10.2-5) ... Setting up libhts-dev:arm64 (1.10.2-5) ... Setting up cmake (3.16.3-3ubuntu2) ... Setting up libruby2.7:arm64 (2.7.1-3build1) ... Setting up dh-autoreconf (19) ... Setting up ruby2.7 (2.7.1-3build1) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up ruby (1:2.7+1) ... Setting up ruby-asciidoctor (2.0.10-2) ... Setting up rake (13.0.1-4) ... Setting up asciidoctor (2.0.10-2) ... Setting up sbuild-build-depends-spades-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-118-generic arm64 (aarch64) Toolchain package versions: binutils_2.35.1-1ubuntu1 dpkg-dev_1.20.5ubuntu2 g++-10_10.2.0-11ubuntu1 gcc-10_10.2.0-11ubuntu1 libc6-dev_2.32-0ubuntu3 libstdc++-10-dev_10.2.0-11ubuntu1 libstdc++6_10.2.0-11ubuntu1 linux-libc-dev_5.8.0-20.21 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.10 asciidoctor_2.0.10-2 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu13 base-passwd_3.5.47 bash_5.0-6ubuntu2 binutils_2.35.1-1ubuntu1 binutils-aarch64-linux-gnu_2.35.1-1ubuntu1 binutils-common_2.35.1-1ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bwa_0.7.17-5 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 cmake_3.16.3-3ubuntu2 cmake-data_3.16.3-3ubuntu2 coreutils_8.32-3ubuntu1 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.0-11ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1ubuntu1 debianutils_4.11.1 dh-autoreconf_19 dh-python_4.20200925 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3build1 dpkg_1.20.5ubuntu2 dpkg-dev_1.20.5ubuntu2 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 file_1:5.38-5 findutils_4.7.0-1ubuntu1 g++_4:10.2.0-1ubuntu1 g++-10_10.2.0-11ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.0-11ubuntu1 gcc-10-base_10.2.0-11ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 init_1.58 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_3.0.0~beta1-0ubuntu6 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libargon2-1_0~20171227-0.2build20.10.0 libasan6_10.2.0-11ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.3-7.1 libatomic1_10.2.0-11ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3ubuntu1 libaudit1_1:2.8.5-3ubuntu1 libbam-dev_0.1.19-4 libbamtools-dev_2.5.1+dfsg-7 libbamtools2.5.1_2.5.1+dfsg-7 libbinutils_2.35.1-1ubuntu1 libblkid1_2.36-3ubuntu1 libboost-dev_1.71.0.0ubuntu4 libboost1.71-dev_1.71.0-6ubuntu9 libbrotli1_1.0.9-2 libbsd0_0.10.0-1 libbwa-dev_0.7.17-5 libbz2-1.0_1.0.8-4ubuntu2 libbz2-dev_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu3 libc-dev-bin_2.32-0ubuntu3 libc6_2.32-0ubuntu3 libc6-dev_2.32-0ubuntu3 libcap-ng0_0.7.9-2.2 libcap2_1:2.43-1 libcc1-0_10.2.0-11ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1ubuntu1 libcrypt1_1:4.4.16-1ubuntu1 libcryptsetup12_2:2.3.3-1ubuntu6 libctf-nobfd0_2.35.1-1ubuntu1 libctf0_2.35.1-1ubuntu1 libcurl3-gnutls_7.68.0-1ubuntu4 libcurl4_7.68.0-1ubuntu4 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.252ubuntu1 libdebhelper-perl_13.2.1ubuntu1 libdeflate0_1.6-1 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdpkg-perl_1.20.5ubuntu2 libelf1_0.181-1 libexpat1_2.2.9-1build1 libexpat1-dev_2.2.9-1build1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.24-1 libffi7_3.3-4 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-11ubuntu1 libgcc-s1_10.2.0-11ubuntu1 libgcrypt20_1.8.5-5ubuntu2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.0-2 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.0-11ubuntu1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libgssapi3-heimdal_7.7.0+dfsg-2 libhat-trie-dev_0.1.2-2 libhat-trie0_0.1.2-2 libhcrypto4-heimdal_7.7.0+dfsg-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.6-2 libhts-dev_1.10.2-5 libhts3_1.10.2-5 libhx509-5-heimdal_7.7.0+dfsg-2 libicu67_67.1-4 libidn11_1.33-2.4 libidn2-0_2.3.0-1 libip4tc2_1.8.5-3ubuntu1 libisl22_0.22.1-1 libitm1_10.2.0-11ubuntu1 libjson-c4_0.13.1+dfsg-9 libjson-c5_0.15-1 libjsoncpp1_1.7.4-3.1ubuntu2 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.17-10 libkrb5support0_1.17-10 libldap-2.4-2_2.4.53+dfsg-1ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10.2.0-11ubuntu1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1ubuntu1 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3ubuntu1 libmpc3_1.2.0~rc1-1 libmpfr6_4.1.0-3 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libnlopt-cxx-dev_2.6.1-8ubuntu2 libnlopt-cxx0_2.6.1-8ubuntu2 libnlopt-dev_2.6.1-8ubuntu2 libnlopt0_2.6.1-8ubuntu2 libnpth0_1.6-2 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.21-2build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libpsl5_0.21.0-1.1 libpython3-dev_3.8.2-0ubuntu2 libpython3-stdlib_3.8.2-0ubuntu2 libpython3.8_3.8.6-1 libpython3.8-dev_3.8.6-1 libpython3.8-minimal_3.8.6-1 libpython3.8-stdlib_3.8.6-1 libreadline8_8.0-4 librhash0_1.4.0-1 libroken18-heimdal_7.7.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libruby2.7_2.7.1-3build1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1ubuntu4 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.36-3ubuntu1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1ubuntu1 libssh-4_0.9.4-1ubuntu3 libssl1.1_1.1.1f-1ubuntu4 libssw-dev_1.1-11 libssw0_1.1-11 libstdc++-10-dev_10.2.0-11ubuntu1 libstdc++6_10.2.0-11ubuntu1 libsub-override-perl_0.09-2 libsystemd0_246.6-1ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtirpc-common_1.2.6-1build1 libtirpc-dev_1.2.6-1build1 libtirpc3_1.2.6-1build1 libtool_2.4.6-14 libtsan0_10.2.0-11ubuntu1 libubsan1_10.2.0-11ubuntu1 libuchardet0_0.0.7-1 libudev1_246.6-1ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36-3ubuntu1 libuv1_1.38.0-2ubuntu2 libwind0-heimdal_7.7.0+dfsg-2 libxml2_2.9.10+dfsg-5build1 libyaml-0-2_0.2.2-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-20.21 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 lynx_2.9.0dev.5-1 lynx-common_2.9.0dev.5-1 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mime-support_3.64ubuntu1 mount_2.36-3ubuntu1 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 python3_3.8.2-0ubuntu2 python3-dev_3.8.2-0ubuntu2 python3-distutils_3.8.5-1 python3-joblib_0.14.0-3 python3-lib2to3_3.8.5-1 python3-minimal_3.8.2-0ubuntu2 python3-pkg-resources_49.3.1-2 python3-yaml_5.3.1-2 python3.8_3.8.6-1 python3.8-dev_3.8.6-1 python3.8-minimal_3.8.6-1 rake_13.0.1-4 readline-common_8.0-4 rpcsvc-proto_1.4.2-0ubuntu3 ruby_1:2.7+1 ruby-asciidoctor_2.0.10-2 ruby-minitest_5.13.0-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.7-1 ruby-test-unit_3.3.5-1 ruby-xmlrpc_0.3.0-2 ruby2.7_2.7.1-3build1 rubygems-integration_1.17.2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-spades-dummy_0.invalid.0 sed_4.7-1build1 sensible-utils_0.0.13 systemd_246.6-1ubuntu1 systemd-sysv_246.6-1ubuntu1 systemd-timesyncd_246.6-1ubuntu1 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tzdata_2020a-0ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36-3ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu2 zlib1g-dev_1:1.2.11.dfsg-2ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Mar 23 06:42:40 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./spades_3.13.1+dfsg-2build2.dsc dpkg-source: info: extracting spades in /<>/spades-3.13.1+dfsg dpkg-source: info: unpacking spades_3.13.1+dfsg.orig.tar.xz dpkg-source: info: unpacking spades_3.13.1+dfsg-2build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0002_use_debian_packaged_python-joblib.patch dpkg-source: info: applying 0003_accept-system-bwa.patch dpkg-source: info: applying 0101_cmake_ignore_removed_python-yaml.patch dpkg-source: info: applying 0102_cmake_ignore_removed_python-joblib.patch dpkg-source: info: applying 0103_use-debian-packaged-bwa.patch dpkg-source: info: applying 0110_build_single_thread.patch dpkg-source: info: applying 0114_use_debian_provided_libs.patch dpkg-source: info: applying 0115_enable_compiler_messages.patch dpkg-source: info: applying 0111_use_full_config_dirs.patch dpkg-source: info: applying 0116_stable_link_order.patch dpkg-source: info: applying 0117_build_with_debug.patch dpkg-source: info: applying 0118_adjust_spades_home_again.patch dpkg-source: info: applying fix-bool-cast dpkg-source: info: applying spelling dpkg-source: info: applying gcc7.patch dpkg-source: info: applying python3.patch dpkg-source: info: applying yaml_load.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20062087 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20062087 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20062087 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package spades dpkg-buildpackage: info: source version 3.13.1+dfsg-2build2 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python3 --sourcedirectory=assembler/src --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/spades-3.13.1+dfsg' dh_auto_clean rm -rf build_spades rm -rf install_spades rm -rf spades_test find . -name "*.pyc" -delete rm -rf /<>/spades-3.13.1+dfsg/debian/man_src/*.html /<>/spades-3.13.1+dfsg/debian/man_src/*.? rm -rf /<>/spades-3.13.1+dfsg/debian/man make[1]: Leaving directory '/<>/spades-3.13.1+dfsg' dh_autoreconf_clean -O--sourcedirectory=assembler/src -O--buildsystem=cmake debian/rules override_dh_clean make[1]: Entering directory '/<>/spades-3.13.1+dfsg' dh_clean -X.orig make[1]: Leaving directory '/<>/spades-3.13.1+dfsg' debian/rules build-arch dh build-arch --with python3 --sourcedirectory=assembler/src --buildsystem=cmake dh_update_autotools_config -a -O--sourcedirectory=assembler/src -O--buildsystem=cmake dh_autoreconf -a -O--sourcedirectory=assembler/src -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/spades-3.13.1+dfsg' echo "Simply use spades_compile.sh in auto_build" Simply use spades_compile.sh in auto_build make[1]: Leaving directory '/<>/spades-3.13.1+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/spades-3.13.1+dfsg' cd assembler && PREFIX=/<>/spades-3.13.1+dfsg/install_spades ./spades_compile.sh CMake Warning (dev) in CMakeLists.txt: No project() command is present. The top-level CMakeLists.txt file must contain a literal, direct call to the project() command. Add a line of code such as project(ProjectName) near the top of the file, but after cmake_minimum_required(). CMake is pretending there is a "project(Project)" command on the first line. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 10.2.0 -- The CXX compiler identification is GNU 10.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at cmake/options.cmake:56 (set): implicitly converting 'INTEGER' to 'STRING' type. Call Stack (most recent call first): CMakeLists.txt:38 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake/options.cmake:57 (set): implicitly converting 'INTEGER' to 'STRING' type. Call Stack (most recent call first): CMakeLists.txt:38 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- Found BZip2: /usr/lib/aarch64-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Could NOT find readline (missing: READLINE_INCLUDE_DIR READLINE_LIBRARY) -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.71.0/BoostConfig.cmake (found version "1.71.0") Making Release Configuration... Building SPAdes from N/A, sha: N/A -- Looking for include file features.h -- Looking for include file features.h - found -- Looking for include file sys/cdefs.h -- Looking for include file sys/cdefs.h - found -- Looking for atomic_fetchadd_long -- Looking for atomic_fetchadd_long - not found -- Looking for OSAtomicAdd64 -- Looking for OSAtomicAdd64 - not found -- Looking for OSSpinLockLock -- Looking for OSSpinLockLock - not found -- Looking for _malloc_thread_cleanup -- Looking for _malloc_thread_cleanup - not found -- Looking for _pthread_mutex_init_calloc_cb, -- Looking for _pthread_mutex_init_calloc_cb, - not found -- Looking for sbrk -- Looking for sbrk - found -- Performing Test JEMALLOC_TLS_MODEL_SUPPORTED -- Performing Test JEMALLOC_TLS_MODEL_SUPPORTED - Success -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Performing Test JEMALLOC_TLS -- Performing Test JEMALLOC_TLS - Success -- Looking for memalign -- Looking for memalign - found -- Looking for valloc -- Looking for valloc - found -- Check size of int -- Check size of int - done -- Check size of long -- Check size of long - done -- Check size of intmax_t -- Check size of intmax_t - done -- Looking for open -- Looking for open - found -- Looking for include file execinfo.h -- Looking for include file execinfo.h - found -- Looking for include file signal.h -- Looking for include file signal.h - found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file cxxabi.h -- Looking for include file cxxabi.h - not found -- Looking for include file dlfcn.h -- Looking for include file dlfcn.h - found -- Looking for include file mach/mach.h -- Looking for include file mach/mach.h - not found -- Looking for include file link.h -- Looking for include file link.h - found -- Looking for backtrace -- Looking for backtrace - found -- Configuring done -- Generating done -- Build files have been written to: /<>/spades-3.13.1+dfsg/assembler/build_spades make[2]: Entering directory '/<>/spades-3.13.1+dfsg/assembler/build_spades' /usr/bin/cmake -S/<>/spades-3.13.1+dfsg/assembler/src -B/<>/spades-3.13.1+dfsg/assembler/build_spades --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/spades-3.13.1+dfsg/assembler/build_spades/CMakeFiles /<>/spades-3.13.1+dfsg/assembler/build_spades/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/spades-3.13.1+dfsg/assembler/build_spades' make -f ext/jemalloc/CMakeFiles/jemalloc.dir/build.make ext/jemalloc/CMakeFiles/jemalloc.dir/depend make[4]: Entering directory '/<>/spades-3.13.1+dfsg/assembler/build_spades' cd /<>/spades-3.13.1+dfsg/assembler/build_spades && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/spades-3.13.1+dfsg/assembler/src /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc /<>/spades-3.13.1+dfsg/assembler/build_spades /<>/spades-3.13.1+dfsg/assembler/build_spades/ext/jemalloc /<>/spades-3.13.1+dfsg/assembler/build_spades/ext/jemalloc/CMakeFiles/jemalloc.dir/DependInfo.cmake --color= Dependee "/<>/spades-3.13.1+dfsg/assembler/build_spades/ext/jemalloc/CMakeFiles/jemalloc.dir/DependInfo.cmake" is newer than depender "/<>/spades-3.13.1+dfsg/assembler/build_spades/ext/jemalloc/CMakeFiles/jemalloc.dir/depend.internal". Dependee "/<>/spades-3.13.1+dfsg/assembler/build_spades/ext/jemalloc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<>/spades-3.13.1+dfsg/assembler/build_spades/ext/jemalloc/CMakeFiles/jemalloc.dir/depend.internal". Scanning dependencies of target jemalloc make[4]: Leaving directory '/<>/spades-3.13.1+dfsg/assembler/build_spades' make -f ext/jemalloc/CMakeFiles/jemalloc.dir/build.make ext/jemalloc/CMakeFiles/jemalloc.dir/build make[4]: Entering directory '/<>/spades-3.13.1+dfsg/assembler/build_spades' [ 1%] Building C object ext/jemalloc/CMakeFiles/jemalloc.dir/arena.c.o cd /<>/spades-3.13.1+dfsg/assembler/build_spades/ext/jemalloc && /usr/bin/cc -DUSE_GLIBCXX_PARALLEL=1 -D_GNU_SOURCE -D_REENTRANT -I/<>/spades-3.13.1+dfsg/assembler/build_spades/ext/jemalloc -I/<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc -I/<>/spades-3.13.1+dfsg/assembler/src/include -I/<>/spades-3.13.1+dfsg/assembler/build_spades/include -I/<>/spades-3.13.1+dfsg/assembler/src -I/<>/spades-3.13.1+dfsg/assembler/src/common -isystem /<>/spades-3.13.1+dfsg/assembler/src/../ext/include -g -O2 -fdebug-prefix-map=/<>/spades-3.13.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -UNDEBUG -Wno-deprecated -g3 -O2 -O3 -funroll-loops -o CMakeFiles/jemalloc.dir/arena.c.o -c /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c In file included from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" 292 | # error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" | ^~~~~ In file included from /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:446, from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/size_classes.h:691:4: error: #error "No size class definitions match configuration" 691 | # error "No size class definitions match configuration" | ^~~~~ In file included from /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:474, from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/ctl.h:47:28: error: 'NBINS' undeclared here (not in a function); did you mean 'NFDBITS'? 47 | malloc_bin_stats_t bstats[NBINS]; | ^~~~~ | NFDBITS In file included from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h: In function 's2u': /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:604:14: error: 'SMALL_MAXCLASS' undeclared (first use in this function) 604 | if (size <= SMALL_MAXCLASS) | ^~~~~~~~~~~~~~ /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:604:14: note: each undeclared identifier is reported only once for each function it appears in /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h: In function 'sa2u': /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:647:16: error: 'SMALL_MAXCLASS' undeclared (first use in this function) 647 | if (usize <= SMALL_MAXCLASS) | ^~~~~~~~~~~~~~ In file included from /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:442, from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/tcache.h: In function 'tcache_dalloc_small': /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/tcache.h:391:2: error: 'SMALL_MAXCLASS' undeclared (first use in this function) 391 | assert(tcache_salloc(ptr) <= SMALL_MAXCLASS); | ^~~~~~ /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/tcache.h: In function 'tcache_dalloc_large': /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/tcache.h:417:2: error: 'SMALL_MAXCLASS' undeclared (first use in this function) 417 | assert(tcache_salloc(ptr) > SMALL_MAXCLASS); | ^~~~~~ In file included from /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:730, from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/arena.h: In function 'arena_malloc': /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/arena.h:867:14: error: 'SMALL_MAXCLASS' undeclared (first use in this function) 867 | if (size <= SMALL_MAXCLASS) { | ^~~~~~~~~~~~~~ In file included from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h: In function 'u2rz': /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:868:15: error: 'SMALL_MAXCLASS' undeclared (first use in this function) 868 | if (usize <= SMALL_MAXCLASS) { | ^~~~~~~~~~~~~~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: At top level: /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:25:2: error: 'SIZE_CLASSES' undeclared here (not in a function) 25 | SIZE_CLASSES | ^~~~~~~~~~~~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_run_reg_dalloc': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:342:31: warning: initialization of 'arena_bin_info_t *' {aka 'struct arena_bin_info_s *'} from incompatible pointer type 'const uint8_t *' {aka 'const unsigned char *'} [-Wincompatible-pointer-types] 342 | arena_bin_info_t *bin_info = &arena_bin_info[binind]; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_chunk_purge': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:787:14: warning: assignment to 'arena_bin_info_t *' {aka 'struct arena_bin_info_s *'} from incompatible pointer type 'const uint8_t *' {aka 'const unsigned char *'} [-Wincompatible-pointer-types] 787 | bin_info = &arena_bin_info[binind]; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_run_dalloc': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:977:32: warning: initialization of 'arena_bin_info_t *' {aka 'struct arena_bin_info_s *'} from incompatible pointer type 'const uint8_t *' {aka 'const unsigned char *'} [-Wincompatible-pointer-types] 977 | arena_bin_info_t *bin_info = &arena_bin_info[binind]; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_bin_nonfull_run_get': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1232:11: warning: assignment to 'arena_bin_info_t *' {aka 'struct arena_bin_info_s *'} from incompatible pointer type 'const uint8_t *' {aka 'const unsigned char *'} [-Wincompatible-pointer-types] 1232 | bin_info = &arena_bin_info[binind]; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_bin_malloc_hard': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1284:11: warning: assignment to 'arena_bin_info_t *' {aka 'struct arena_bin_info_s *'} from incompatible pointer type 'const uint8_t *' {aka 'const unsigned char *'} [-Wincompatible-pointer-types] 1284 | bin_info = &arena_bin_info[binind]; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_tcache_fill_small': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1355:6: warning: assignment to 'arena_bin_t *' {aka 'struct arena_bin_s *'} from incompatible pointer type 'const uint8_t *' {aka 'const unsigned char *'} [-Wincompatible-pointer-types] 1355 | bin = &arena->bins[binind]; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1360:35: warning: passing argument 2 of 'arena_run_reg_alloc' from incompatible pointer type [-Wincompatible-pointer-types] 1360 | ptr = arena_run_reg_alloc(run, &arena_bin_info[binind]); | ^~~~~~~~~~~~~~~~~~~~~~~ | | | const uint8_t * {aka const unsigned char *} /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:315:57: note: expected 'arena_bin_info_t *' {aka 'struct arena_bin_info_s *'} but argument is of type 'const uint8_t *' {aka 'const unsigned char *'} 315 | arena_run_reg_alloc(arena_run_t *run, arena_bin_info_t *bin_info) | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1366:32: warning: passing argument 2 of 'arena_alloc_junk_small' from incompatible pointer type [-Wincompatible-pointer-types] 1366 | arena_alloc_junk_small(ptr, &arena_bin_info[binind], | ^~~~~~~~~~~~~~~~~~~~~~~ | | | const uint8_t * {aka const unsigned char *} In file included from /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:550, from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/arena.h:406:58: note: expected 'arena_bin_info_t *' {aka 'struct arena_bin_info_s *'} but argument is of type 'const uint8_t *' {aka 'const unsigned char *'} 406 | void arena_alloc_junk_small(void *ptr, arena_bin_info_t *bin_info, | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1373:53: error: request for member 'reg_size' in something not a structure or union 1373 | bin->stats.allocated += i * arena_bin_info[binind].reg_size; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1373:29: error: invalid operands to binary * (have 'unsigned int' and 'const uint8_t *' {aka 'const unsigned char *'}) 1373 | bin->stats.allocated += i * arena_bin_info[binind].reg_size; | ^ | | | const uint8_t * {aka const unsigned char *} /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1373:24: warning: assignment to 'size_t' {aka 'long unsigned int'} from 'const uint8_t *' {aka 'const unsigned char *'} makes integer from pointer without a cast [-Wint-conversion] 1373 | bin->stats.allocated += i * arena_bin_info[binind].reg_size; | ^~ In file included from /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:442, from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_malloc_small': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1441:16: warning: comparison between pointer and integer 1441 | assert(binind < NBINS); | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1442:6: warning: assignment to 'arena_bin_t *' {aka 'struct arena_bin_s *'} from incompatible pointer type 'const uint8_t *' {aka 'const unsigned char *'} [-Wincompatible-pointer-types] 1442 | bin = &arena->bins[binind]; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1443:31: error: request for member 'reg_size' in something not a structure or union 1443 | size = arena_bin_info[binind].reg_size; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1443:7: warning: assignment to 'size_t' {aka 'long unsigned int'} from 'const uint8_t *' {aka 'const unsigned char *'} makes integer from pointer without a cast [-Wint-conversion] 1443 | size = arena_bin_info[binind].reg_size; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1447:34: warning: passing argument 2 of 'arena_run_reg_alloc' from incompatible pointer type [-Wincompatible-pointer-types] 1447 | ret = arena_run_reg_alloc(run, &arena_bin_info[binind]); | ^~~~~~~~~~~~~~~~~~~~~~~ | | | const uint8_t * {aka const unsigned char *} /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:315:57: note: expected 'arena_bin_info_t *' {aka 'struct arena_bin_info_s *'} but argument is of type 'const uint8_t *' {aka 'const unsigned char *'} 315 | arena_run_reg_alloc(arena_run_t *run, arena_bin_info_t *bin_info) | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1472:9: warning: passing argument 2 of 'arena_alloc_junk_small' from incompatible pointer type [-Wincompatible-pointer-types] 1472 | &arena_bin_info[binind], false); | ^~~~~~~~~~~~~~~~~~~~~~~ | | | const uint8_t * {aka const unsigned char *} /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1384:53: note: expected 'arena_bin_info_t *' {aka 'struct arena_bin_info_s *'} but argument is of type 'const uint8_t *' {aka 'const unsigned char *'} 1384 | arena_alloc_junk_small(void *ptr, arena_bin_info_t *bin_info, bool zero) | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1478:32: warning: passing argument 2 of 'arena_alloc_junk_small' from incompatible pointer type [-Wincompatible-pointer-types] 1478 | arena_alloc_junk_small(ret, &arena_bin_info[binind], | ^~~~~~~~~~~~~~~~~~~~~~~ | | | const uint8_t * {aka const unsigned char *} /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1384:53: note: expected 'arena_bin_info_t *' {aka 'struct arena_bin_info_s *'} but argument is of type 'const uint8_t *' {aka 'const unsigned char *'} 1384 | arena_alloc_junk_small(void *ptr, arena_bin_info_t *bin_info, bool zero) | ~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:442, from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_prof_promoted': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1591:17: error: 'SMALL_MAXCLASS' undeclared (first use in this function) 1591 | assert(size <= SMALL_MAXCLASS); | ^~~~~~~~~~~~~~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1591:14: warning: comparison between pointer and integer 1591 | assert(size <= SMALL_MAXCLASS); | ^~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1596:16: warning: comparison between pointer and integer 1596 | assert(binind < NBINS); | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_dissociate_bin_run': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1613:32: warning: initialization of 'arena_bin_info_t *' {aka 'struct arena_bin_info_s *'} from incompatible pointer type 'const uint8_t *' {aka 'const unsigned char *'} [-Wincompatible-pointer-types] 1613 | arena_bin_info_t *bin_info = &arena_bin_info[binind]; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_dalloc_bin_run': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1640:11: warning: assignment to 'arena_bin_info_t *' {aka 'struct arena_bin_info_s *'} from incompatible pointer type 'const uint8_t *' {aka 'const unsigned char *'} [-Wincompatible-pointer-types] 1640 | bin_info = &arena_bin_info[binind]; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_dalloc_bin_locked': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1713:11: warning: assignment to 'arena_bin_info_t *' {aka 'struct arena_bin_info_s *'} from incompatible pointer type 'const uint8_t *' {aka 'const unsigned char *'} [-Wincompatible-pointer-types] 1713 | bin_info = &arena_bin_info[binind]; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_ralloc_no_move': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1946:18: error: 'SMALL_MAXCLASS' undeclared (first use in this function) 1946 | if (oldsize <= SMALL_MAXCLASS) { | ^~~~~~~~~~~~~~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1946:15: warning: comparison between pointer and integer 1946 | if (oldsize <= SMALL_MAXCLASS) { | ^~ In file included from /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:442, from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1947:50: error: request for member 'reg_size' in something not a structure or union 1947 | assert(arena_bin_info[SMALL_SIZE2BIN(oldsize)].reg_size | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1948:8: warning: comparison between pointer and integer 1948 | == oldsize); | ^~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1949:22: warning: comparison between pointer and integer 1949 | if ((size + extra <= SMALL_MAXCLASS && | ^~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:1961:21: warning: comparison between pointer and integer 1961 | if (size + extra > SMALL_MAXCLASS) { | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_stats_merge': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2078:16: warning: comparison between pointer and integer 2078 | for (i = 0; i < NBINS; i++) { | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2079:22: warning: initialization of 'arena_bin_t *' {aka 'struct arena_bin_s *'} from incompatible pointer type 'const uint8_t *' {aka 'const unsigned char *'} [-Wincompatible-pointer-types] 2079 | arena_bin_t *bin = &arena->bins[i]; | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_new': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2138:16: warning: comparison between pointer and integer 2138 | for (i = 0; i < NBINS; i++) { | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2139:7: warning: assignment to 'arena_bin_t *' {aka 'struct arena_bin_s *'} from incompatible pointer type 'const uint8_t *' {aka 'const unsigned char *'} [-Wincompatible-pointer-types] 2139 | bin = &arena->bins[i]; | ^ In file included from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'bin_info_run_size_calc': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2227:19: error: 'LG_QUANTUM' undeclared (first use in this function); did you mean 'QUANTUM'? 2227 | try_hdr_size = QUANTUM_CEILING(try_hdr_size); | ^~~~~~~~~~~~~~~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2227:19: error: invalid operands to binary << (have 'unsigned int' and 'const uint8_t *' {aka 'const unsigned char *'}) 2227 | try_hdr_size = QUANTUM_CEILING(try_hdr_size); | ^~~~~~~~~~~~~~~ | | | const uint8_t * {aka const unsigned char *} /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2227:19: error: invalid operands to binary << (have 'unsigned int' and 'const uint8_t *' {aka 'const unsigned char *'}) 2227 | try_hdr_size = QUANTUM_CEILING(try_hdr_size); | ^~~~~~~~~~~~~~~ | | | const uint8_t * {aka const unsigned char *} /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2268:20: error: invalid operands to binary << (have 'unsigned int' and 'const uint8_t *' {aka 'const unsigned char *'}) 2268 | try_hdr_size = QUANTUM_CEILING(try_hdr_size); | ^~~~~~~~~~~~~~~ | | | const uint8_t * {aka const unsigned char *} /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2268:20: error: invalid operands to binary << (have 'unsigned int' and 'const uint8_t *' {aka 'const unsigned char *'}) 2268 | try_hdr_size = QUANTUM_CEILING(try_hdr_size); | ^~~~~~~~~~~~~~~ | | | const uint8_t * {aka const unsigned char *} /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'bin_info_init': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2312:14: error: expected ';' before '}' token 2312 | SIZE_CLASSES | ^ | ; 2313 | #undef SIZE_CLASS 2314 | } | ~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_prefork': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2354:16: warning: comparison between pointer and integer 2354 | for (i = 0; i < NBINS; i++) | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2355:39: error: request for member 'lock' in something not a structure or union 2355 | malloc_mutex_prefork(&arena->bins[i].lock); | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2355:24: warning: passing argument 1 of 'malloc_mutex_prefork' from incompatible pointer type [-Wincompatible-pointer-types] 2355 | malloc_mutex_prefork(&arena->bins[i].lock); | ^~~~~~~~~~~~~~~~~~~~ | | | const uint8_t (*)[1] {aka const unsigned char (*)[1]} In file included from /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:545, from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/mutex.h:52:43: note: expected 'malloc_mutex_t *' {aka 'struct malloc_mutex_s *'} but argument is of type 'const uint8_t (*)[1]' {aka 'const unsigned char (*)[1]'} 52 | void malloc_mutex_prefork(malloc_mutex_t *mutex); | ~~~~~~~~~~~~~~~~^~~~~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_postfork_parent': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2363:16: warning: comparison between pointer and integer 2363 | for (i = 0; i < NBINS; i++) | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2364:47: error: request for member 'lock' in something not a structure or union 2364 | malloc_mutex_postfork_parent(&arena->bins[i].lock); | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2364:32: warning: passing argument 1 of 'malloc_mutex_postfork_parent' from incompatible pointer type [-Wincompatible-pointer-types] 2364 | malloc_mutex_postfork_parent(&arena->bins[i].lock); | ^~~~~~~~~~~~~~~~~~~~ | | | const uint8_t (*)[1] {aka const unsigned char (*)[1]} In file included from /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:545, from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/mutex.h:53:51: note: expected 'malloc_mutex_t *' {aka 'struct malloc_mutex_s *'} but argument is of type 'const uint8_t (*)[1]' {aka 'const unsigned char (*)[1]'} 53 | void malloc_mutex_postfork_parent(malloc_mutex_t *mutex); | ~~~~~~~~~~~~~~~~^~~~~ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c: In function 'arena_postfork_child': /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2373:16: warning: comparison between pointer and integer 2373 | for (i = 0; i < NBINS; i++) | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2374:46: error: request for member 'lock' in something not a structure or union 2374 | malloc_mutex_postfork_child(&arena->bins[i].lock); | ^ /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2374:31: warning: passing argument 1 of 'malloc_mutex_postfork_child' from incompatible pointer type [-Wincompatible-pointer-types] 2374 | malloc_mutex_postfork_child(&arena->bins[i].lock); | ^~~~~~~~~~~~~~~~~~~~ | | | const uint8_t (*)[1] {aka const unsigned char (*)[1]} In file included from /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/jemalloc_internal.h:545, from /<>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/arena.c:2: /<>/spades-3.13.1+dfsg/assembler/ext/include/jemalloc/internal/mutex.h:54:50: note: expected 'malloc_mutex_t *' {aka 'struct malloc_mutex_s *'} but argument is of type 'const uint8_t (*)[1]' {aka 'const unsigned char (*)[1]'} 54 | void malloc_mutex_postfork_child(malloc_mutex_t *mutex); | ~~~~~~~~~~~~~~~~^~~~~ make[4]: *** [ext/jemalloc/CMakeFiles/jemalloc.dir/build.make:63: ext/jemalloc/CMakeFiles/jemalloc.dir/arena.c.o] Error 1 make[4]: Leaving directory '/<>/spades-3.13.1+dfsg/assembler/build_spades' make[3]: *** [CMakeFiles/Makefile2:1137: ext/jemalloc/CMakeFiles/jemalloc.dir/all] Error 2 make[3]: Leaving directory '/<>/spades-3.13.1+dfsg/assembler/build_spades' make[2]: *** [Makefile:152: all] Error 2 make[2]: Leaving directory '/<>/spades-3.13.1+dfsg/assembler/build_spades' make[1]: *** [debian/rules:42: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>/spades-3.13.1+dfsg' make: *** [debian/rules:24: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-10-02T04:18:03Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: n/a Build-Time: 31 Distribution: groovy Fail-Stage: build Host Architecture: arm64 Install-Time: 92 Job: spades_3.13.1+dfsg-2build2.dsc Machine Architecture: arm64 Package: spades Package-Time: 128 Source-Version: 3.13.1+dfsg-2build2 Space: n/a Status: attempted Version: 3.13.1+dfsg-2build2 -------------------------------------------------------------------------------- Finished at 2020-10-02T04:18:03Z Build needed 00:02:08, no disk space E: Build failure (dpkg-buildpackage died) RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-20062087 Scanning for processes to kill in build PACKAGEBUILD-20062087