https://launchpad.net/ubuntu/+archive/test-rebuild-20201216-hirsute-gcc11/+build/20653883 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-078 4.15.0-134-generic #138-Ubuntu SMP Fri Jan 15 10:57:23 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_194~476~ubuntu18.04.1 python3-lpbuildd_194~476~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 27 Jan 00:24:52 ntpdate[1669]: adjust time server 10.211.37.1 offset 0.006303 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20653883 --image-type chroot /home/buildd/filecache-default/6663ab897c1b9684e4da3138ea2f806b3d40e7b1 Creating target for build PACKAGEBUILD-20653883 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20653883 Starting target for build PACKAGEBUILD-20653883 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20653883 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu hirsute main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute main' 'deb http://ftpmaster.internal/ubuntu hirsute main universe' Overriding sources.list in build-PACKAGEBUILD-20653883 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20653883 Adding trusted keys to build-PACKAGEBUILD-20653883 Warning: apt-key is deprecated. Manage keyring files in trusted.gpg.d instead (see apt-key(8)). OK Warning: apt-key is deprecated. Manage keyring files in trusted.gpg.d instead (see apt-key(8)). /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20653883 Updating target for build PACKAGEBUILD-20653883 Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu hirsute InRelease [23.8 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute InRelease [269 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute InRelease [17.6 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute InRelease [17.6 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu hirsute/main armhf Packages [15.1 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu hirsute/main Translation-en [10.0 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main armhf Packages [1348 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [513 kB] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf Packages [11.7 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/universe armhf Packages [12.5 MB] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main Translation-en [6856 B] Get:12 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute/main armhf Packages [14.9 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5422 kB] Get:14 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute/main Translation-en [11.0 kB] Fetched 20.2 MB in 9s (2365 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-11-base libisl23 libperl5.32 libxxhash0 perl-modules-5.32 The following packages have been kept back: cpp g++ gcc The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils coreutils cpp-10 dash dpkg dpkg-dev fakeroot g++-10 gcc-10 gcc-10-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgssapi-krb5-2 libidn2-0 libip4tc2 libk5crypto3 libkrb5-3 libkrb5support0 liblz4-1 libmount1 libmpc3 libncurses6 libncursesw6 libnpth0 libp11-kit0 libpcre2-8-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login mount ncurses-base ncurses-bin openssl passwd patch perl perl-base readline-common sensible-utils systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata util-linux 111 upgraded, 5 newly installed, 0 to remove and 3 not upgraded. Need to get 72.4 MB of archives. After this operation, 44.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main armhf libcrypt-dev armhf 1:4.4.17-1ubuntu1 [113 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf gcc-11-base armhf 11-20210123-1ubuntu1 [19.0 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main armhf libc6-dev armhf 2.32-0ubuntu6 [1582 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libgcc-s1 armhf 11-20210123-1ubuntu1 [36.3 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libstdc++6 armhf 11-20210123-1ubuntu1 [499 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libgomp1 armhf 11-20210123-1ubuntu1 [91.0 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main armhf libc-dev-bin armhf 2.32-0ubuntu6 [29.6 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main armhf libcrypt1 armhf 1:4.4.17-1ubuntu1 [86.7 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main armhf linux-libc-dev armhf 5.8.0-36.40+21.04.1 [1108 kB] Get:10 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libatomic1 armhf 11-20210123-1ubuntu1 [7232 B] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libasan6 armhf 11-20210123-1ubuntu1 [2004 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main armhf libtirpc-common all 1.3.1-1 [7452 B] Get:13 http://ftpmaster.internal/ubuntu hirsute/main armhf libk5crypto3 armhf 1.18.3-4 [74.1 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main armhf libgssapi-krb5-2 armhf 1.18.3-4 [107 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main armhf libkrb5-3 armhf 1.18.3-4 [282 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main armhf libkrb5support0 armhf 1.18.3-4 [27.9 kB] Get:17 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libubsan1 armhf 11-20210123-1ubuntu1 [807 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main armhf libssl1.1 armhf 1.1.1f-1ubuntu5 [1079 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main armhf libtirpc-dev armhf 1.3.1-1 [174 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main armhf libtirpc3 armhf 1.3.1-1 [65.6 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main armhf libc6 armhf 2.32-0ubuntu6 [2124 kB] Get:22 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libcc1-0 armhf 11-20210123-1ubuntu1 [41.2 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main armhf base-files armhf 11ubuntu16 [60.2 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main armhf bash armhf 5.1-1ubuntu1 [606 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main armhf bsdutils armhf 1:2.36.1-1ubuntu2 [78.6 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main armhf coreutils armhf 8.32-4ubuntu2 [1207 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main armhf tar armhf 1.32+dfsg-1 [249 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main armhf dpkg armhf 1.20.7.1ubuntu1 [1212 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main armhf dash armhf 0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 [78.9 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main armhf grep armhf 3.6-1 [143 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main armhf gzip armhf 1.10-2ubuntu2 [91.4 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main armhf login armhf 1:4.8.1-1ubuntu8 [217 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main armhf libncurses6 armhf 6.2+20201114-2 [79.9 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main armhf libncursesw6 armhf 6.2+20201114-2 [106 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main armhf libtinfo6 armhf 6.2+20201114-2 [74.0 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main armhf ncurses-bin armhf 6.2+20201114-2 [165 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main armhf perl-modules-5.32 all 5.32.0-6 [2754 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main armhf libperl5.32 armhf 5.32.0-6 [3357 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main armhf perl armhf 5.32.0-6 [225 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main armhf perl-base armhf 5.32.0-6 [1423 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main armhf libgdbm6 armhf 1.19-2 [24.6 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main armhf libgdbm-compat4 armhf 1.19-2 [5896 B] Get:43 http://ftpmaster.internal/ubuntu hirsute/main armhf util-linux armhf 2.36.1-1ubuntu2 [1005 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main armhf libdebconfclient0 armhf 0.256ubuntu1 [5712 B] Get:45 http://ftpmaster.internal/ubuntu hirsute/main armhf base-passwd armhf 3.5.48 [46.0 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main armhf init-system-helpers all 1.59 [38.2 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main armhf libc-bin armhf 2.32-0ubuntu6 [505 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main armhf ncurses-base all 6.2+20201114-2 [18.4 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main armhf sysvinit-utils armhf 2.96-5ubuntu1 [19.2 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main armhf libxxhash0 armhf 0.8.0-2 [21.8 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcrypt20 armhf 1.8.7-2ubuntu1 [364 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main armhf liblz4-1 armhf 1.9.3-0ubuntu1 [49.4 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd-sysv armhf 247.1-4ubuntu1 [10.3 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main armhf libaudit-common all 1:2.8.5-3ubuntu3 [4048 B] Get:55 http://ftpmaster.internal/ubuntu hirsute/main armhf libcap-ng0 armhf 0.7.9-2.2build1 [9672 B] Get:56 http://ftpmaster.internal/ubuntu hirsute/main armhf libaudit1 armhf 1:2.8.5-3ubuntu3 [36.1 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main armhf libpcre2-8-0 armhf 10.35-2ubuntu1 [169 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main armhf libselinux1 armhf 3.1-2build2 [61.0 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage-common all 3.1-1build2 [10.0 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage1 armhf 3.1-1build2 [75.6 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main armhf passwd armhf 1:4.8.1-1ubuntu8 [751 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main armhf adduser all 3.118ubuntu5 [156 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd-timesyncd armhf 247.1-4ubuntu1 [27.7 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main armhf libapparmor1 armhf 3.0.0-0ubuntu5 [30.4 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main armhf libblkid1 armhf 2.36.1-1ubuntu2 [117 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main armhf libudev1 armhf 247.1-4ubuntu1 [61.5 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main armhf libdevmapper1.02.1 armhf 2:1.02.167-1ubuntu4 [120 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main armhf libuuid1 armhf 2.36.1-1ubuntu2 [20.4 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main armhf libcryptsetup12 armhf 2:2.3.4-1ubuntu1 [174 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main armhf libidn2-0 armhf 2.3.0-5 [49.6 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main armhf libp11-kit0 armhf 0.23.22-1 [170 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main armhf libgnutls30 armhf 3.7.0-5ubuntu1 [860 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main armhf libip4tc2 armhf 1.8.5-3ubuntu4 [16.7 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main armhf libseccomp2 armhf 2.4.3-1ubuntu6 [32.5 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main armhf mount armhf 2.36.1-1ubuntu2 [113 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd armhf 247.1-4ubuntu1 [3806 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main armhf libsystemd0 armhf 247.1-4ubuntu1 [250 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main armhf libzstd1 armhf 1.4.8+dfsg-1 [258 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main armhf libapt-pkg6.0 armhf 2.1.18 [819 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main armhf gpgv armhf 2.2.20-1ubuntu2 [172 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main armhf apt armhf 2.1.18 [1275 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main armhf init armhf 1.59 [6164 B] Get:83 http://ftpmaster.internal/ubuntu hirsute/main armhf libacl1 armhf 2.2.53-9 [14.9 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main armhf libattr1 armhf 1:2.4.48-6 [11.7 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main armhf libmount1 armhf 2.36.1-1ubuntu2 [131 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main armhf libsmartcols1 armhf 2.36.1-1ubuntu2 [82.3 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main armhf g++-10 armhf 10.2.1-6ubuntu1 [7613 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main armhf gcc-10 armhf 10.2.1-6ubuntu1 [13.6 MB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main armhf libstdc++-10-dev armhf 10.2.1-6ubuntu1 [1815 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcc-10-dev armhf 10.2.1-6ubuntu1 [717 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/main armhf libisl23 armhf 0.23-1 [513 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute/main armhf libmpc3 armhf 1.2.0-1 [36.1 kB] Get:93 http://ftpmaster.internal/ubuntu hirsute/main armhf libctf0 armhf 2.35.50.20210106-1ubuntu2 [82.2 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/main armhf libctf-nobfd0 armhf 2.35.50.20210106-1ubuntu2 [80.9 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main armhf binutils-arm-linux-gnueabihf armhf 2.35.50.20210106-1ubuntu2 [2484 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main armhf libbinutils armhf 2.35.50.20210106-1ubuntu2 [421 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main armhf binutils armhf 2.35.50.20210106-1ubuntu2 [3388 B] Get:98 http://ftpmaster.internal/ubuntu hirsute/main armhf binutils-common armhf 2.35.50.20210106-1ubuntu2 [216 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main armhf cpp-10 armhf 10.2.1-6ubuntu1 [6637 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main armhf gcc-10-base armhf 10.2.1-6ubuntu1 [19.7 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main armhf sensible-utils all 0.0.14 [13.5 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/main armhf libcap2 armhf 1:2.44-1 [14.7 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute/main armhf readline-common all 8.1-1 [54.1 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/main armhf libreadline8 armhf 8.1-1 [115 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/main armhf libsqlite3-0 armhf 3.34.0-1 [504 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute/main armhf openssl armhf 1.1.1f-1ubuntu5 [597 kB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main armhf tzdata all 2020f-1ubuntu2 [294 kB] Get:108 http://ftpmaster.internal/ubuntu hirsute/main armhf dpkg-dev all 1.20.7.1ubuntu1 [934 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/main armhf libdpkg-perl all 1.20.7.1ubuntu1 [232 kB] Get:110 http://ftpmaster.internal/ubuntu hirsute/main armhf patch armhf 2.7.6-7 [102 kB] Get:111 http://ftpmaster.internal/ubuntu hirsute/main armhf libfakeroot armhf 1.25.3-1.1 [23.2 kB] Get:112 http://ftpmaster.internal/ubuntu hirsute/main armhf fakeroot armhf 1.25.3-1.1 [60.9 kB] Get:113 http://ftpmaster.internal/ubuntu hirsute/main armhf libnpth0 armhf 1.6-3 [6980 B] Get:114 http://ftpmaster.internal/ubuntu hirsute/main armhf gpg armhf 2.2.20-1ubuntu2 [429 kB] Get:115 http://ftpmaster.internal/ubuntu hirsute/main armhf gpgconf armhf 2.2.20-1ubuntu2 [108 kB] Get:116 http://ftpmaster.internal/ubuntu hirsute/main armhf gpg-agent armhf 2.2.20-1ubuntu2 [196 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 72.4 MB in 4s (20.4 MB/s) (Reading database ... 12723 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.17-1ubuntu1_armhf.deb ... Unpacking libcrypt-dev:armhf (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../libc6-dev_2.32-0ubuntu6_armhf.deb ... Unpacking libc6-dev:armhf (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.32-0ubuntu6_armhf.deb ... Unpacking libc-dev-bin (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libcrypt1_1%3a4.4.17-1ubuntu1_armhf.deb ... Unpacking libcrypt1:armhf (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:armhf (1:4.4.17-1ubuntu1) ... (Reading database ... 12722 files and directories currently installed.) Preparing to unpack .../0-linux-libc-dev_5.8.0-36.40+21.04.1_armhf.deb ... Unpacking linux-libc-dev:armhf (5.8.0-36.40+21.04.1) over (5.8.0-25.26) ... Preparing to unpack .../1-libtirpc-common_1.3.1-1_all.deb ... Unpacking libtirpc-common (1.3.1-1) over (1.2.6-1build1) ... 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Setting up linux-libc-dev:armhf (5.8.0-36.40+21.04.1) ... Setting up libctf-nobfd0:armhf (2.35.50.20210106-1ubuntu2) ... Setting up libnpth0:armhf (1.6-3) ... Setting up libgomp1:armhf (11-20210123-1ubuntu1) ... Setting up libcap2:armhf (1:2.44-1) ... Setting up libfakeroot:armhf (1.25.3-1.1) ... Setting up libasan6:armhf (11-20210123-1ubuntu1) ... Setting up libkrb5support0:armhf (1.18.3-4) ... Setting up tzdata (2020f-1ubuntu2) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jan 27 00:26:31 UTC 2021. Universal Time is now: Wed Jan 27 00:26:31 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1.1) ... Setting up gcc-10-base:armhf (10.2.1-6ubuntu1) ... Setting up libncurses6:armhf (6.2+20201114-2) ... Setting up libmpc3:armhf (1.2.0-1) ... Setting up libatomic1:armhf (11-20210123-1ubuntu1) ... Setting up patch (2.7.6-7) ... Setting up libncursesw6:armhf (6.2+20201114-2) ... Setting up libk5crypto3:armhf (1.18.3-4) ... Setting up libubsan1:armhf (11-20210123-1ubuntu1) ... Setting up sensible-utils (0.0.14) ... Setting up libcrypt-dev:armhf (1:4.4.17-1ubuntu1) ... Setting up libkrb5-3:armhf (1.18.3-4) ... Setting up libbinutils:armhf (2.35.50.20210106-1ubuntu2) ... Setting up libisl23:armhf (0.23-1) ... Setting up libc-dev-bin (2.32-0ubuntu6) ... Setting up openssl (1.1.1f-1ubuntu5) ... Setting up readline-common (8.1-1) ... Setting up libcc1-0:armhf (11-20210123-1ubuntu1) ... Setting up cpp-10 (10.2.1-6ubuntu1) ... Setting up libgdbm6:armhf (1.19-2) ... Setting up libctf0:armhf (2.35.50.20210106-1ubuntu2) ... Setting up libgcc-10-dev:armhf (10.2.1-6ubuntu1) ... Setting up libreadline8:armhf (8.1-1) ... Setting up libgssapi-krb5-2:armhf (1.18.3-4) ... Setting up libgdbm-compat4:armhf (1.19-2) ... Setting up libperl5.32:armhf (5.32.0-6) ... Setting up gpgconf (2.2.20-1ubuntu2) ... Setting up binutils-arm-linux-gnueabihf (2.35.50.20210106-1ubuntu2) ... Setting up gpg (2.2.20-1ubuntu2) ... Setting up libtirpc3:armhf (1.3.1-1) ... Setting up gpg-agent (2.2.20-1ubuntu2) ... Setting up binutils (2.35.50.20210106-1ubuntu2) ... Setting up perl (5.32.0-6) ... Setting up libtirpc-dev:armhf (1.3.1-1) ... Setting up gcc-10 (10.2.1-6ubuntu1) ... Setting up libdpkg-perl (1.20.7.1ubuntu1) ... Setting up libc6-dev:armhf (2.32-0ubuntu6) ... Setting up libstdc++-10-dev:armhf (10.2.1-6ubuntu1) ... Setting up g++-10 (10.2.1-6ubuntu1) ... Setting up dpkg-dev (1.20.7.1ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20653883 armhf hirsute -c chroot:build-PACKAGEBUILD-20653883 --arch=armhf --dist=hirsute --nolog mapsembler2_2.2.4+dfsg-4.dsc Initiating build PACKAGEBUILD-20653883 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-134-generic #138-Ubuntu SMP Fri Jan 15 10:57:23 UTC 2021 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-078.buildd +==============================================================================+ | mapsembler2 2.2.4+dfsg-4 (armhf) Wed, 27 Jan 2021 00:26:36 +0000 | +==============================================================================+ Package: mapsembler2 Version: 2.2.4+dfsg-4 Source Version: 2.2.4+dfsg-4 Distribution: hirsute Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20653883/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- mapsembler2_2.2.4+dfsg-4.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/mapsembler2-uu8Tkf/mapsembler2-2.2.4+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/mapsembler2-uu8Tkf' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-lJjC0R/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-lJjC0R/apt_archive ./ InRelease Get:2 copy:/<>/resolver-lJjC0R/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-lJjC0R/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-lJjC0R/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-lJjC0R/apt_archive ./ Packages [430 B] Fetched 1736 B in 0s (24.5 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 3 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-lJjC0R/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (24.5 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14723 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in amd64 arm64 armel armhf hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 ppc64el s390x) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev Filtered Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev dpkg-deb: building package 'sbuild-build-depends-mapsembler2-dummy' in '/<>/resolver-lJjC0R/apt_archive/sbuild-build-depends-mapsembler2-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mapsembler2-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-lJjC0R/apt_archive ./ InRelease Get:2 copy:/<>/resolver-lJjC0R/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-lJjC0R/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-lJjC0R/apt_archive ./ Sources [530 B] Get:5 copy:/<>/resolver-lJjC0R/apt_archive ./ Packages [608 B] Fetched 2101 B in 0s (39.7 kB/s) Reading package lists... Reading package lists... Install mapsembler2 build dependencies (apt-based resolver) ----------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bc bsdextrautils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libboost-dev libboost1.74-dev libbrotli1 libcppunit-1.15-0 libcppunit-dev libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libcppunit-doc libhdf5-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc bsdextrautils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libboost-dev libboost1.74-dev libbrotli1 libcppunit-1.15-0 libcppunit-dev libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf sbuild-build-depends-mapsembler2-dummy zlib1g-dev 0 upgraded, 79 newly installed, 0 to remove and 3 not upgraded. Need to get 37.1 MB of archives. After this operation, 244 MB of additional disk space will be used. Get:1 copy:/<>/resolver-lJjC0R/apt_archive ./ sbuild-build-depends-mapsembler2-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main armhf bsdextrautils armhf 2.36.1-1ubuntu2 [70.7 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libgfortran5 armhf 11-20210123-1ubuntu1 [253 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main armhf groff-base armhf 1.22.4-5 [759 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main armhf libpipeline1 armhf 1.5.3-1 [23.3 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main armhf man-db armhf 2.9.3-2 [1082 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main armhf libmagic-mgc armhf 1:5.39-3 [228 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main armhf libmagic1 armhf 1:5.39-3 [71.7 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main armhf file armhf 1:5.39-3 [22.7 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main armhf libelf1 armhf 0.182-3 [39.7 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main armhf libexpat1 armhf 2.2.10-1 [55.1 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main armhf libicu67 armhf 67.1-5 [8312 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main armhf libxml2 armhf 2.9.10+dfsg-6.3build1 [531 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main armhf gettext-base armhf 0.21-3ubuntu2 [36.2 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main armhf libpsl5 armhf 0.21.0-1.1ubuntu1 [51.1 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main armhf libuv1 armhf 1.40.0-1 [68.7 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main armhf libsigsegv2 armhf 2.12-3 [13.1 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main armhf m4 armhf 1.4.18-5 [187 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main armhf autoconf all 2.69-14 [293 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main armhf autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main armhf automake all 1:1.16.3-2ubuntu1 [552 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main armhf autopoint all 0.21-3ubuntu2 [422 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main armhf bc armhf 1.07.1-2build2 [80.4 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main armhf cmake-data all 3.18.4-1ubuntu3 [1705 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main armhf libarchive13 armhf 3.4.3-2 [294 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main armhf libbrotli1 armhf 1.0.9-2build2 [259 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main armhf libroken18-heimdal armhf 7.7.0+dfsg-2 [34.5 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main armhf libasn1-8-heimdal armhf 7.7.0+dfsg-2 [140 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main armhf libheimbase1-heimdal armhf 7.7.0+dfsg-2 [24.3 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main armhf libhcrypto4-heimdal armhf 7.7.0+dfsg-2 [78.5 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main armhf libwind0-heimdal armhf 7.7.0+dfsg-2 [47.2 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main armhf libhx509-5-heimdal armhf 7.7.0+dfsg-2 [88.8 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main armhf libkrb5-26-heimdal armhf 7.7.0+dfsg-2 [170 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main armhf libheimntlm0-heimdal armhf 7.7.0+dfsg-2 [13.2 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main armhf libgssapi3-heimdal armhf 7.7.0+dfsg-2 [79.9 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2ubuntu1 [13.2 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main armhf libsasl2-2 armhf 2.1.27+dfsg-2ubuntu1 [42.4 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main armhf libldap-2.4-2 armhf 2.4.56+dfsg-1ubuntu1 [134 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main armhf libnghttp2-14 armhf 1.42.0-1 [60.7 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build2 [48.9 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main armhf libssh-4 armhf 0.9.5-1 [147 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main armhf libcurl4 armhf 7.72.0-1ubuntu1 [207 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main armhf libjsoncpp24 armhf 1.9.4-4 [65.1 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main armhf librhash0 armhf 1.4.1-1 [134 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main armhf cmake armhf 3.18.4-1ubuntu3 [3515 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main armhf libtool all 2.4.6-15 [161 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main armhf dh-autoreconf all 19 [16.1 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main armhf libdebhelper-perl all 13.3.1ubuntu1 [62.2 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:52 http://ftpmaster.internal/ubuntu hirsute/main armhf libfile-stripnondeterminism-perl all 1.10.0-1 [17.0 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main armhf dh-strip-nondeterminism all 1.10.0-1 [5228 B] Get:54 http://ftpmaster.internal/ubuntu hirsute/main armhf dwz armhf 0.13+20210118-1 [178 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main armhf gettext armhf 0.21-3ubuntu2 [756 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main armhf debhelper all 13.3.1ubuntu1 [882 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/universe armhf hdf5-helpers armhf 1.10.6+repack-2 [13.7 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/universe armhf libaec0 armhf 1.0.4-1 [19.4 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost1.74-dev armhf 1.74.0-3ubuntu2 [9508 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost-dev armhf 1.74.0.3ubuntu2 [3376 B] Get:63 http://ftpmaster.internal/ubuntu hirsute/universe armhf libcppunit-1.15-0 armhf 1.15.1-2build1 [67.4 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/universe armhf libcppunit-dev armhf 1.15.1-2build1 [131 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/universe armhf libsz2 armhf 1.0.4-1 [5048 B] Get:66 http://ftpmaster.internal/ubuntu hirsute/universe armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1191 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/universe armhf libhdf5-cpp-103-1 armhf 1.10.6+repack-2 [103 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/universe armhf libhdf5-fortran-102 armhf 1.10.6+repack-2 [64.7 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/universe armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [51.3 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/universe armhf libhdf5-hl-fortran-100 armhf 1.10.6+repack-2 [22.2 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/universe armhf libhdf5-hl-cpp-100 armhf 1.10.6+repack-2 [9696 B] Get:72 http://ftpmaster.internal/ubuntu hirsute/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu4 [149 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main armhf libjpeg-turbo8 armhf 2.0.3-0ubuntu2 [90.4 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main armhf libjpeg-turbo8-dev armhf 2.0.3-0ubuntu2 [203 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:76 http://ftpmaster.internal/ubuntu hirsute/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:77 http://ftpmaster.internal/ubuntu hirsute/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:78 http://ftpmaster.internal/ubuntu hirsute/universe armhf libaec-dev armhf 1.0.4-1 [16.7 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/universe armhf libhdf5-dev armhf 1.10.6+repack-2 [2454 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.1 MB in 3s (14.4 MB/s) Selecting previously unselected package bsdextrautils. 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Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.10.0-1) ... Setting up libjpeg-turbo8-dev:armhf (2.0.3-0ubuntu2) ... Setting up gettext (0.21-3ubuntu2) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:armhf (3.4.3-2) ... Setting up libasn1-8-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libaec-dev:armhf (1.0.4-1) ... Setting up m4 (1.4.18-5) ... Setting up libhcrypto4-heimdal:armhf (7.7.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libwind0-heimdal:armhf (7.7.0+dfsg-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.10.0-1) ... Setting up libhdf5-103-1:armhf (1.10.6+repack-2) ... Setting up dwz (0.13+20210118-1) ... Setting up groff-base (1.22.4-5) ... Setting up libhdf5-cpp-103-1:armhf (1.10.6+repack-2) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up libhdf5-hl-100:armhf (1.10.6+repack-2) ... Setting up automake (1:1.16.3-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhx509-5-heimdal:armhf (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libhdf5-hl-cpp-100:armhf (1.10.6+repack-2) ... Setting up libhdf5-fortran-102:armhf (1.10.6+repack-2) ... Setting up libhdf5-hl-fortran-100:armhf (1.10.6+repack-2) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libhdf5-dev (1.10.6+repack-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libldap-2.4-2:armhf (2.4.56+dfsg-1ubuntu1) ... Setting up libcurl4:armhf (7.72.0-1ubuntu1) ... Setting up cmake (3.18.4-1ubuntu3) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.3.1ubuntu1) ... Setting up sbuild-build-depends-mapsembler2-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-134-generic arm64 (armv7l) Toolchain package versions: binutils_2.35.50.20210106-1ubuntu2 dpkg-dev_1.20.7.1ubuntu1 g++-10_10.2.1-6ubuntu1 gcc-10_10.2.1-6ubuntu1 libc6-dev_2.32-0ubuntu6 libstdc++-10-dev_10.2.1-6ubuntu1 libstdc++6_11-20210123-1ubuntu1 linux-libc-dev_5.8.0-36.40+21.04.1 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1build1 apt_2.1.18 autoconf_2.69-14 automake_1:1.16.3-2ubuntu1 autopoint_0.21-3ubuntu2 autotools-dev_20180224.1+nmu1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1-1ubuntu1 bc_1.07.1-2build2 binutils_2.35.50.20210106-1ubuntu2 binutils-arm-linux-gnueabihf_2.35.50.20210106-1ubuntu2 binutils-common_2.35.50.20210106-1ubuntu2 bsdextrautils_2.36.1-1ubuntu2 bsdutils_1:2.36.1-1ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 cmake_3.18.4-1ubuntu3 cmake-data_3.18.4-1ubuntu3 coreutils_8.32-4ubuntu2 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.1-6ubuntu1 dash_0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 debconf_1.5.74 debhelper_13.3.1ubuntu1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.10.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.7.1ubuntu1 dpkg-dev_1.20.7.1ubuntu1 dwz_0.13+20210118-1 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.7.0-1ubuntu2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.1-6ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.1-6ubuntu1 gcc-10-base_10.2.1-6ubuntu1 gcc-11-base_11-20210123-1ubuntu1 gettext_0.21-3ubuntu2 gettext-base_0.21-3ubuntu2 gpg_2.2.20-1ubuntu2 gpg-agent_2.2.20-1ubuntu2 gpgconf_2.2.20-1ubuntu2 gpgv_2.2.20-1ubuntu2 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu2 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init_1.59 init-system-helpers_1.59 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libctf0_2.35.50.20210106-1ubuntu2 libcurl4_7.72.0-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.256ubuntu1 libdebhelper-perl_13.3.1ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu4 libdpkg-perl_1.20.7.1ubuntu1 libelf1_0.182-3 libexpat1_2.2.10-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.3-1.1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.10.0-1 libgcc-10-dev_10.2.1-6ubuntu1 libgcc-s1_11-20210123-1ubuntu1 libgcrypt20_1.8.7-2ubuntu1 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran5_11-20210123-1ubuntu1 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.7.0-5ubuntu1 libgomp1_11-20210123-1ubuntu1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libgssapi3-heimdal_7.7.0+dfsg-2 libhcrypto4-heimdal_7.7.0+dfsg-2 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.6-2 libhx509-5-heimdal_7.7.0+dfsg-2 libicu67_67.1-5 libidn2-0_2.3.0-5 libip4tc2_1.8.5-3ubuntu4 libisl22_0.22.1-1 libisl23_0.23-1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.3-0ubuntu2 libjpeg-turbo8-dev_2.0.3-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c5_0.15-1 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libldap-2.4-2_2.4.56+dfsg-1ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.3-0ubuntu1 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-1ubuntu2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.35-2ubuntu1 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libperl5.32_5.32.0-6 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libpsl5_0.21.0-1.1ubuntu1 libreadline8_8.1-1 librhash0_1.4.1-1 libroken18-heimdal_7.7.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libsasl2-2_2.1.27+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27+dfsg-2ubuntu1 libseccomp2_2.4.3-1ubuntu6 libselinux1_3.1-2build2 libsemanage-common_3.1-1build2 libsemanage1_3.1-1build2 libsepol1_3.1-1 libsigsegv2_2.12-3 libsmartcols1_2.36.1-1ubuntu2 libsqlite3-0_3.34.0-1 libss2_1.45.6-1ubuntu1 libssh-4_0.9.5-1 libssl1.1_1.1.1f-1ubuntu5 libstdc++-10-dev_10.2.1-6ubuntu1 libstdc++6_11-20210123-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_247.1-4ubuntu1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_11-20210123-1ubuntu1 libuchardet0_0.0.7-1 libudev1_247.1-4ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36.1-1ubuntu2 libuv1_1.40.0-1 libwind0-heimdal_7.7.0+dfsg-2 libxml2_2.9.10+dfsg-6.3build1 libxxhash0_0.8.0-2 libzstd1_1.4.8+dfsg-1 linux-libc-dev_5.8.0-36.40+21.04.1 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu8 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-5 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-1ubuntu2 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 openssl_1.1.1f-1ubuntu5 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu8 patch_2.7.6-7 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mapsembler2-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_247.1-4ubuntu1 systemd-sysv_247.1-4ubuntu1 systemd-timesyncd_247.1-4ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.32+dfsg-1 tzdata_2020f-1ubuntu2 ubuntu-keyring_2020.06.17.1 util-linux_2.36.1-1ubuntu2 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Jun 13 13:38:25 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mapsembler2_2.2.4+dfsg-4.dsc dpkg-source: info: extracting mapsembler2 in /<>/mapsembler2-2.2.4+dfsg dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg.orig.tar.xz dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying run_pipeline dpkg-source: info: applying add_hardening dpkg-source: info: applying skip_mphe dpkg-source: info: applying gcc-5.patch dpkg-source: info: applying libgomp.patch dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20653883 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20653883 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20653883 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package mapsembler2 dpkg-buildpackage: info: source version 2.2.4+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>/mapsembler2-2.2.4+dfsg' rm -rf mapsembler2_extremities/build cd mapsembler2_extend && make clean make[2]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend' rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o make[2]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend' rm -f mapsembler2_extend/mapsembler_extend cd kissreads_graph && make clean make[2]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/kissreads_graph' rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o make[2]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/kissreads_graph' rm -f kissreads_graph/mapsembler2_kissreads_graph cd kissreads && make clean make[2]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/kissreads' rm -rf ./src/*.o kissreads make[2]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/kissreads' rm -f kissreads/mapsembler2_kissreads dh_clean make[1]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>/mapsembler2-2.2.4+dfsg' mkdir mapsembler2_extremities/build cd mapsembler2_extremities/build && cmake .. && make -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test SHARED_PTR_USE_TR1_MEMORY -- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Success -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Success -- gatb-core is here '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core' -- CppUnit: found headers (in /usr/include) but not the library... -- CppUnit NOT FOUND -- Found Perl: /usr/bin/perl (found version "5.32.0") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. -- Check size of __uint128_t -- Check size of __uint128_t - failed ------------------------------------------------------------------------------------- -- C++ EXTENSIONS WILL BE USED... ------------------------------------------------------------------------------------- -- Options: -O3 -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -- SUPPORTED KMER SIZES ARE 32 64 96 128 -- ---------- GATB TOOLS ---------- -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- ---------- GATB EXAMPLES ---------- -- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1 -- Configuring done CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:221 (ADD_DEPENDENCIES): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "hdf5" of target "gatbcore-static" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done -- Build files have been written to: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build make[2]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[3]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target gatbcore-static make[4]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 0%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o [ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o [ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:39, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<128>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<96>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<64>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<32>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:39, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<32>::Count}; _Tp = gatb::core::kmer::impl::Kmer<32>::Count; _Alloc = std::allocator::Count>]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::Count, std::allocator::Count> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<64>::Count}; _Tp = gatb::core::kmer::impl::Kmer<64>::Count; _Alloc = std::allocator::Count>]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::Count, std::allocator::Count> >::iterator’ changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<96>::Count}; _Tp = gatb::core::kmer::impl::Kmer<96>::Count; _Alloc = std::allocator::Count>]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::Count, std::allocator::Count> >::iterator’ changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<128>::Count}; _Tp = gatb::core::kmer::impl::Kmer<128>::Count; _Alloc = std::allocator::Count>]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::Count, std::allocator::Count> >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/10/set:60, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_map.h: In member function ‘T& gatb::core::system::impl::ThreadObject::operator()() [with T = long long unsigned int]’: /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/set:60, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair::Count, std::allocator::Count> >*>; _KeyOfValue = std::_Select1st::Count, std::allocator::Count> >*> >; _Compare = std::less; _Alloc = std::allocator::Count, std::allocator::Count> >*> >]’: /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:39, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gatb::core::debruijn::impl::BranchingAlgorithm::execute() [with unsigned int span = 32]’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/set:60, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair::Count, std::allocator::Count> >*>; _KeyOfValue = std::_Select1st::Count, std::allocator::Count> >*> >; _Compare = std::less; _Alloc = std::allocator::Count, std::allocator::Count> >*> >]’: /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:39, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1662 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 In file included from /usr/include/c++/10/set:60, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair::Count, std::allocator::Count> >*>; _KeyOfValue = std::_Select1st::Count, std::allocator::Count> >*> >; _Compare = std::less; _Alloc = std::allocator::Count, std::allocator::Count> >*> >]’: /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:39, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1662 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 In file included from /usr/include/c++/10/set:60, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair::Count, std::allocator::Count> >*>; _KeyOfValue = std::_Select1st::Count, std::allocator::Count> >*> >; _Compare = std::less; _Alloc = std::allocator::Count, std::allocator::Count> >*> >]’: /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:39, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1662 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1937 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gatb::core::debruijn::impl::BranchingAlgorithm::execute() [with unsigned int span = 64]’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1937 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gatb::core::debruijn::impl::BranchingAlgorithm::execute() [with unsigned int span = 96]’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1937 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gatb::core::debruijn::impl::BranchingAlgorithm::execute() [with unsigned int span = 128]’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_map.h: In member function ‘void gatb::core::tools::dp::IDispatcher::IteratorCommand::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm::execute<96>::]’: /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_map.h: In member function ‘void gatb::core::tools::dp::IDispatcher::IteratorCommand::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm::execute<32>::]’: /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_map.h: In member function ‘void gatb::core::tools::dp::IDispatcher::IteratorCommand::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm::execute<64>::]’: /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_map.h: In member function ‘void gatb::core::tools::dp::IDispatcher::IteratorCommand::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm::execute<128>::]’: /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function ‘static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 566 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function ‘static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 590 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::BranchingNode&}; _Tp = gatb::core::debruijn::impl::BranchingNode; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void gatb::core::debruijn::impl::Graph::neighbors >::Cmd::execute()’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In member function ‘std::set gatb::core::debruijn::impl::Graph::neighbors(IteratorInput, IteratorInput) const [with T = gatb::core::debruijn::impl::BranchingNode; IteratorInput = std::_Rb_tree_const_iterator]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2139:25: note: parameter passing for argument of type ‘std::set::iterator’ {aka ‘std::_Rb_tree, std::less, std::allocator >::const_iterator’} changed in GCC 7.1 2139 | std::set Graph::neighbors (std::set::iterator first, std::set::iterator last) const | ^~~~~ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2139:25: note: parameter passing for argument of type ‘std::set::iterator’ {aka ‘std::_Rb_tree, std::less, std::allocator >::const_iterator’} changed in GCC 7.1 [ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /usr/include/c++/10/vector:72, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::IntegerTemplate, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >&}; _Tp = gatb::core::tools::math::IntegerTemplate, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >; _Alloc = std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /usr/include/c++/10/bits/stl_vector.h: In constructor ‘gatb::core::debruijn::impl::BranchingTerminator::BranchingTerminator(const gatb::core::debruijn::impl::Graph&)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In constructor ‘gatb::core::debruijn::impl::BranchingTerminator::BranchingTerminator(const gatb::core::debruijn::impl::Graph&)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:39, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /usr/include/c++/10/bits/stl_algo.h: In function ‘bool std::binary_search(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >; _Tp = gatb::core::tools::math::IntegerTemplate, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >]’: /usr/include/c++/10/bits/stl_algo.h:2262:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >’ changed in GCC 7.1 2262 | binary_search(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:2262:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >’ changed in GCC 7.1 In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp: In member function ‘virtual bool gatb::core::debruijn::impl::BranchingTerminator::is_marked(const gatb::core::debruijn::impl::Node&) const’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >’ changed in GCC 7.1 42 | bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp: In member function ‘virtual void gatb::core::debruijn::impl::BranchingTerminator::mark(const gatb::core::debruijn::impl::Edge&)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >’ changed in GCC 7.1 42 | bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp: In member function ‘virtual void gatb::core::debruijn::impl::BranchingTerminator::mark(const gatb::core::debruijn::impl::Node&)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >’ changed in GCC 7.1 42 | bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >’ changed in GCC 7.1 42 | bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function ‘bool gatb::core::debruijn::impl::MonumentTraversal::validate_consensuses(std::set&, gatb::core::debruijn::impl::Path&)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:675:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set::size_type’ {aka ‘unsigned int’} [-Wformat=] 675 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set::size_type {aka unsigned int} | %u /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function ‘gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set&)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:47: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 772 | printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); | ~^ ~~~~~~~~~~~~~~ | | | | int long int | %ld [ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o [ 28%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/Integer.hpp:44, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<4>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<3>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<2>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<1>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/Integer.hpp:44, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<2>&}; _Tp = gatb::core::tools::math::LargeInt<2>; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<3>&}; _Tp = gatb::core::tools::math::LargeInt<3>; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<4>&}; _Tp = gatb::core::tools::math::LargeInt<4>; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_vector.h: In function ‘gatb::core::tools::collections::Container* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<1>]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/Integer.hpp:44, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/set:60, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair >*>; _KeyOfValue = std::_Select1st >*> >; _Compare = std::less; _Alloc = std::allocator >*> >]’: /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_map.h: In member function ‘T& gatb::core::system::impl::ThreadObject::operator()() [with T = gatb::core::tools::collections::impl::BagCache >]’: /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/set:60, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair >*>; _KeyOfValue = std::_Select1st >*> >; _Compare = std::less; _Alloc = std::allocator >*> >]’: /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_map.h: In member function ‘T& gatb::core::system::impl::ThreadObject::operator()() [with T = gatb::core::tools::collections::impl::BagCache >]’: /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/Integer.hpp:44, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1662 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/10/set:60, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair >*>; _KeyOfValue = std::_Select1st >*> >; _Compare = std::less; _Alloc = std::allocator >*> >]’: /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_map.h: In member function ‘T& gatb::core::system::impl::ThreadObject::operator()() [with T = gatb::core::tools::collections::impl::BagCache >]’: /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/Integer.hpp:44, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1662 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/10/set:60, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair >*>; _KeyOfValue = std::_Select1st >*> >; _Compare = std::less; _Alloc = std::allocator >*> >]’: /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_map.h: In member function ‘T& gatb::core::system::impl::ThreadObject::operator()() [with T = gatb::core::tools::collections::impl::BagCache >]’: /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/Integer.hpp:44, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1662 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gatb::core::kmer::impl::DebloomAlgorithm::createCFP(gatb::core::tools::collections::Collection::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 32]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/Integer.hpp:44, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1937 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gatb::core::kmer::impl::DebloomAlgorithm::createCFP(gatb::core::tools::collections::Collection::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 64]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/Integer.hpp:44, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_vector.h: In function ‘gatb::core::tools::collections::Container* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<2>]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/Integer.hpp:44, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1937 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gatb::core::kmer::impl::DebloomAlgorithm::createCFP(gatb::core::tools::collections::Collection::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 96]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/Integer.hpp:44, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_vector.h: In function ‘gatb::core::tools::collections::Container* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<3>]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/Integer.hpp:44, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1937 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gatb::core::kmer::impl::DebloomAlgorithm::createCFP(gatb::core::tools::collections::Collection::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 128]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/Integer.hpp:44, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_vector.h: In function ‘gatb::core::tools::collections::Container* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<4>]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/Integer.hpp:44, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 32%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o [ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:31, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:39, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:27, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<4>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<3>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<2>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<1>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/10/algorithm:62, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:39, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:27, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gatb::core::kmer::impl::PartitionsByVectorCommand::execute() [with unsigned int span = 32]’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1662 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1937 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gatb::core::kmer::impl::PartitionsByVectorCommand::execute() [with unsigned int span = 64]’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1937 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gatb::core::kmer::impl::PartitionsByVectorCommand::execute() [with unsigned int span = 96]’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1937 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gatb::core::kmer::impl::PartitionsByVectorCommand::execute() [with unsigned int span = 128]’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o [ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o [ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o [ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o [ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o [ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o [ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o [ 60%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o [ 60%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o [ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o [ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o [ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o [ 71%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o [ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o [ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o [ 85%] Linking CXX static library ../lib/libgatbcore.a make[4]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 85%] Built target gatbcore-static make[4]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target mapsembler2_extremities make[4]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/main.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 92%] Linking CXX executable mapsembler2_extremities make[4]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 92%] Built target mapsembler2_extremities make[4]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target dbginfo make[4]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 96%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 96%] Linking CXX executable ../bin/dbginfo make[4]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 96%] Built target dbginfo make[4]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target dbgh5 make[4]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [100%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o In file included from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [100%] Linking CXX executable ../bin/dbgh5 make[4]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [100%] Built target dbgh5 make[4]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target emphf_copyasis make[4]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [100%] Built target emphf_copyasis make[3]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[2]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' cd mapsembler2_extend && make k=29 make[2]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend' g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bank.cpp: In member function ‘void Bank::init(char**, int)’: ../minia/Bank.cpp:282:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 282 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘void BinaryBank::open(bool)’: ../minia/Bank.cpp:713:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 713 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘void BinaryReads::open(bool)’: ../minia/Bank.cpp:798:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 798 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘int KmersBuffer::readkmers()’: ../minia/Bank.cpp:988:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 988 | fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bloom.cpp: In member function ‘void Bloom::load(char*)’: ../minia/Bloom.cpp:257:7: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 257 | fread(blooma, sizeof(unsigned char), nchar, file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Terminator.cpp: In constructor ‘BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)’: ../minia/Terminator.cpp:337:60: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘unsigned int’ [-Wformat=] 337 | fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); | ~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long unsigned int unsigned int | %u g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Traversal.cpp: In member function ‘bool MonumentTraversal::find_starting_kmer(kmer_type, kmer_type&)’: ../minia/Traversal.cpp:352:112: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘std::set::size_type’ {aka ‘unsigned int’} [-Wformat=] 352 | if (debug) printf("depth %d useless int %d and starting belongs %d nb involved nodes %lu\n",frontline.depth,useless_int,all_involved_extensions.find(starting_kmer) != all_involved_extensions.end(),all_involved_extensions.size()); | ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set::size_type {aka unsigned int} | %u ../minia/Traversal.cpp: In member function ‘bool MonumentTraversal::validate_consensuses(std::set >, char*, int&)’: ../minia/Traversal.cpp:820:55: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wformat=] 820 | if (debug) printf("bubble path %d: %s (len=%lu)\n",path_number,(*it).c_str(),(*it).length()); | ~~^ ~~~~~~~~~~~~~~ | | | | long unsigned int std::__cxx11::basic_string::size_type {aka unsigned int} | %u ../minia/Traversal.cpp:841:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set >::size_type’ {aka ‘unsigned int’} [-Wformat=] 841 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set >::size_type {aka unsigned int} | %u g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Set.cpp: In member function ‘void AssocSet::print_total_size()’: ../minia/Set.cpp:132:31: warning: format ‘%li’ expects argument of type ‘long int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 132 | printf("Assoc set size: %li\n",liste.size()); | ~~^ ~~~~~~~~~~~~ | | | | long int std::vector::size_type {aka unsigned int} | %i ../minia/Set.cpp:133:45: warning: format ‘%li’ expects argument of type ‘long int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 133 | printf("Assoc set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity()); | ~~^ ~~~~~~~~~~~~~~~~ | | | | long int std::vector::size_type {aka unsigned int} | %i ../minia/Set.cpp:133:59: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 133 | printf("Assoc set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity()); | ~~^ ~~~~~~~~~~~~~~~~~~~~~~ | | | | long int std::vector::size_type {aka unsigned int} | %i ../minia/Set.cpp:134:15: warning: format ‘%li’ expects argument of type ‘long int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 134 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t), | ~~^ ~~~~~~~~~~~~~~~~ | | | | long int std::vector::size_type {aka unsigned int} | %i ../minia/Set.cpp:134:20: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘unsigned int’ [-Wformat=] 134 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t), | ~~^ ~~~~~~~~~~~~~~~~ | | | | long int unsigned int | %i ../minia/Set.cpp:134:27: warning: format ‘%li’ expects argument of type ‘long int’, but argument 4 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 134 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t), | ~~^ ~~~~~~~~~~~~~~~~~~~~~~ | | | | long int std::vector::size_type {aka unsigned int} | %i ../minia/Set.cpp:134:32: warning: format ‘%li’ expects argument of type ‘long int’, but argument 5 has type ‘unsigned int’ [-Wformat=] 134 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t), | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int unsigned int | %i ../minia/Set.cpp:134:39: warning: format ‘%li’ expects argument of type ‘long int’, but argument 6 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 134 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t), | ~~^ | | | long int | %i 135 | (liste.capacity()*sizeof(set_elem)+liste_value.capacity()*sizeof(set_value_t))/1024/1024 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector::size_type {aka unsigned int} ../minia/Set.cpp: In member function ‘void AssocPairedSet::print()’: ../minia/Set.cpp:242:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 242 | printf("print %lu elems \n",liste.size()); | ~~^ ~~~~~~~~~~~~ | | | | long unsigned int std::vector::size_type {aka unsigned int} | %u ../minia/Set.cpp: In member function ‘void AssocPairedSet::print_total_size()’: ../minia/Set.cpp:298:38: warning: format ‘%li’ expects argument of type ‘long int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 298 | printf("Assoc paired set size: %li\n",liste.size()); | ~~^ ~~~~~~~~~~~~ | | | | long int std::vector::size_type {aka unsigned int} | %i ../minia/Set.cpp:299:52: warning: format ‘%li’ expects argument of type ‘long int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 299 | printf("Assoc paired set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity()); | ~~^ ~~~~~~~~~~~~~~~~ | | | | long int std::vector::size_type {aka unsigned int} | %i ../minia/Set.cpp:299:66: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 299 | printf("Assoc paired set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity()); | ~~^ ~~~~~~~~~~~~~~~~~~~~~~ | | | | long int std::vector::size_type {aka unsigned int} | %i ../minia/Set.cpp:300:15: warning: format ‘%li’ expects argument of type ‘long int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 300 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t), | ~~^ ~~~~~~~~~~~~~~~~ | | | | long int std::vector::size_type {aka unsigned int} | %i ../minia/Set.cpp:300:20: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘unsigned int’ [-Wformat=] 300 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t), | ~~^ ~~~~~~~~~~~~~~~~ | | | | long int unsigned int | %i ../minia/Set.cpp:300:27: warning: format ‘%li’ expects argument of type ‘long int’, but argument 4 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 300 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t), | ~~^ ~~~~~~~~~~~~~~~~~~~~~~ | | | | long int std::vector::size_type {aka unsigned int} | %i ../minia/Set.cpp:300:32: warning: format ‘%li’ expects argument of type ‘long int’, but argument 5 has type ‘unsigned int’ [-Wformat=] 300 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t), | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int unsigned int | %i ../minia/Set.cpp:300:39: warning: format ‘%li’ expects argument of type ‘long int’, but argument 6 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 300 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t), | ~~^ | | | long int | %i 301 | (liste.capacity()*sizeof(set_elem)+liste_value.capacity()*sizeof(set_value_t))/1024/1024 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector::size_type {aka unsigned int} ../minia/Set.cpp: In member function ‘void AssocPairedSet::load(char*)’: ../minia/Set.cpp:290:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 290 | fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from ../minia/Pool.h:11, from ../minia/Hash16.h:12, from ../minia/Set.h:6, from ../minia/Set.cpp:1: /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from ../minia/Pool.h:11, from ../minia/Hash16.h:12, from ../minia/Set.h:6, from ../minia/Set.cpp:1: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/10/algorithm:61, from ../minia/Pool.h:11, from ../minia/Hash16.h:12, from ../minia/Set.h:6, from ../minia/Set.cpp:1: /usr/include/c++/10/bits/stl_algobase.h: In function ‘_ForwardIterator std::__lower_bound(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_val]’: /usr/include/c++/10/bits/stl_algobase.h:1309:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1309 | __lower_bound(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algobase.h:1309:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algobase.h:1309:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/10/algorithm:62, from ../minia/Pool.h:11, from ../minia/Hash16.h:12, from ../minia/Set.h:6, from ../minia/Set.cpp:1: /usr/include/c++/10/bits/stl_algo.h: In member function ‘virtual bool ListSet::contains(set_elem)’: /usr/include/c++/10/bits/stl_algo.h:2273:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2273 | = std::__lower_bound(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2274 | __gnu_cxx::__ops::__iter_less_val()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1881:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1881 | __final_insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1881:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function ‘virtual void ListSet::finalize()’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1977:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1977 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:61, from ../minia/Pool.h:11, from ../minia/Hash16.h:12, from ../minia/Set.h:6, from ../minia/Set.cpp:1: /usr/include/c++/10/bits/stl_algobase.h: In member function ‘int AssocSet::get(set_elem, set_value_t*)’: /usr/include/c++/10/bits/stl_algobase.h:1357:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1357 | return std::__lower_bound(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 1358 | __gnu_cxx::__ops::__iter_less_val()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algobase.h: In member function ‘int AssocSet::set(set_elem, set_value_t)’: /usr/include/c++/10/bits/stl_algobase.h:1357:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1357 | return std::__lower_bound(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 1358 | __gnu_cxx::__ops::__iter_less_val()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algobase.h: In member function ‘int AssocPairedSet::get(set_elem, pair_nt_kmer_t*)’: /usr/include/c++/10/bits/stl_algobase.h:1357:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1357 | return std::__lower_bound(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 1358 | __gnu_cxx::__ops::__iter_less_val()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algobase.h: In member function ‘int AssocPairedSet::set(set_elem, pair_nt_kmer_t)’: /usr/include/c++/10/bits/stl_algobase.h:1357:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1357 | return std::__lower_bound(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 1358 | __gnu_cxx::__ops::__iter_less_val()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from ../minia/Set.h:10, from ../minia/Set.cpp:1: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from ../minia/Set.h:10, from ../minia/Set.cpp:1: /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void ListSet::insert(set_elem)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In member function ‘void AssocPairedSet::load_branching(BinaryBank*)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from ../minia/Pool.h:11, from ../minia/Hash16.h:12, from ../minia/Set.h:6, from ../minia/Set.cpp:1: /usr/include/c++/10/bits/stl_algo.h: In member function ‘virtual void AssocSet::finalize()’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1977:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1977 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function ‘virtual void AssocPairedSet::finalize()’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1977:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1977 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Utils.cpp: In function ‘void end_kmer_count_partition(bool, Hash16*)’: ../minia/Utils.cpp:187:14: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 187 | ftruncate(fileno(F_kmercpt_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:199:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:225:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 225 | ftruncate(fileno(F_kmercpt_read), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘char* return_file_name(const char*)’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:866, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:866, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:866, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:866, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘void end_kmer_count_partition(bool, Hash16*)’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:866, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp: In function ‘void sorting_count(Bank*, char*, int, int, bool, int, bool)’: ../minia/SortingCount.cpp:56:15: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 56 | getcwd(current_path,sizeof(current_path)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:283:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 283 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:537:19: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 537 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from ../minia/Utils.h:9, from ../minia/SortingCount.h:17, from ../minia/SortingCount.cpp:1: /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from ../minia/Utils.h:9, from ../minia/SortingCount.h:17, from ../minia/SortingCount.cpp:1: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from ../minia/SortingCount.h:8, from ../minia/SortingCount.cpp:1: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ../minia/SortingCount.cpp: In function ‘void sorting_count(Bank*, char*, int, int, bool, int, bool)’: ../minia/SortingCount.cpp:45:25: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 512 [-Wformat-overflow=] 45 | sprintf(p_buf, "%s/%s", temp_dir, ep->d_name); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:866, from ../minia/SortingCount.h:1, from ../minia/SortingCount.cpp:1: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 2 and 1280 bytes into a destination of size 512 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from ../minia/SortingCount.h:8, from ../minia/SortingCount.cpp:1: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from ../minia/Utils.h:9, from ../minia/SortingCount.h:17, from ../minia/SortingCount.cpp:1: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Debloom.cpp: In function ‘void end_debloom_partition(bool)’: ../minia/Debloom.cpp:29:11: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 29 | ftruncate(fileno(F_debloom_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o commons.o -c commons.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial In file included from /usr/include/c++/10/vector:72, from ../minia/Set.h:10, from ../minia/Terminator.h:13, from IterativeExtensions.h:42, from IterativeExtensions.cpp:38: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const kmer_strand_depth&}; _Tp = kmer_strand_depth; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {kmer_strand_depth}; _Tp = kmer_strand_depth; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {kmer_strand_depth}; _Tp = kmer_strand_depth; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from ../minia/Set.h:10, from ../minia/Terminator.h:13, from IterativeExtensions.h:42, from IterativeExtensions.cpp:38: /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static void IterativeExtensions::construct_linear_seqs(std::string, std::string, int, std::string, int, int, parcours_t, bool)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static void IterativeExtensions::construct_linear_seqs_paired(std::string, std::string, int, std::string, int, int)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o Fragment.o -c Fragment.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o GraphOutput.o -c GraphOutput.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial GraphOutput.cpp: In member function ‘void GraphOutput::print_starter_head(int, char*)’: GraphOutput.cpp:145:108: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 145 | fprintf(starters_file,"\"Starter_%d\":{\"data\":{\"id\":\"S%d\", \"sequence\":\"%s\", \"length\":%ld,\n", index,index, sequence, strlen(sequence)); | ~~^ ~~~~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d GraphOutput.cpp: In member function ‘void GraphOutput::print_node(long int, char*)’: GraphOutput.cpp:204:99: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 204 | fprintf(nodes_file," { \"data\": { \"id\":\"n%ld\", \"sequence\":\"%s\", \"length\":%ld}}\n",index,ascii_node, strlen(ascii_node)); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial mapsembler_extend.cpp: In function ‘int main(int, char**)’: mapsembler_extend.cpp:260:36: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘unsigned int’ [-Wformat=] 260 | fprintf (stderr,"taille cell %lu \n", sizeof(cell)); | ~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | | unsigned int | long unsigned int | %u mapsembler_extend.cpp:320:76: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 320 | command = string("rm -f ")+string(prefix_trashable)+string("*"); system((char *)command.c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/mapsembler2_extend' cd kissreads_graph && make k=29 make[2]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/kissreads_graph' g++ -o block_allocator.o -c block_allocator.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o DeBruijnGraph.o -c DeBruijnGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 DeBruijnGraph.cpp: In member function ‘int DBG::output_graph(FILE*, int, int&, bool, bool)’: DeBruijnGraph.cpp:405:38: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 405 | fprintf(out,", \"length\": %lu", strlen(all_nodes[i]->fragment->fragment_sequence)); | ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | size_t {aka unsigned int} | long unsigned int | %u In file included from /usr/include/string.h:519, from Fragment.h:2, from DeBruijnGraph.h:8, from DeBruijnGraph.cpp:8: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘void DBG::_ZN3DBG15set_firstNodeIdEPc.part.0(char*)’ at DeBruijnGraph.cpp:373:29: /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:91:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DeBruijnGraph.cpp: In member function ‘void DBG::_ZN3DBG15set_firstNodeIdEPc.part.0(char*)’: DeBruijnGraph.cpp:373:29: note: length computed here 373 | if(set_line!=NULL) strncpy(set_line,firstNodeId,strlen(firstNodeId)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o Fragment.o -c Fragment.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o json.o -c json.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFind(HashTable*, u_long)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1227 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFindLast(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1232 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFirstBucket(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1296:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1296 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashNextBucket(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1306:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1306 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)’: read_coherence_mapsembler/libchash.cpp:1413:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1413 | fread(szMagicKey, 1, 4, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro ‘READ_UL’ 1422 | READ_UL(fp, ht->cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro ‘READ_UL’ 1423 | READ_UL(fp, ht->cItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro ‘READ_UL’ 1424 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro ‘READ_UL’ 1427 | READ_UL(fp, cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1429:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1429 | fread(rgchKeys, 1, cchKey, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro ‘READ_UL’ 1434 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘u_long SparseRead(FILE*, SparseBin**)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro ‘READ_UL’ 628 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:633:3: note: in expansion of macro ‘READ_UL’ 633 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ g++ -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 read_coherence_mapsembler/read_coherence.cpp: In function ‘char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)’: read_coherence_mapsembler/read_coherence.cpp:988:39: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 3 has type ‘group_t’ {aka ‘list_*’} [-Wformat=] 988 | "error group %X: recomputed number of substitutions (%d) not matching dynamic number of substitutions (%d) (so i'm glad i coded this test)\n fragment: %s\nconsensus:%s\n", | ~^ | | | unsigned int 989 | current_read_group, number_substitutions, | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} read_coherence_mapsembler/read_coherence.cpp:1002:39: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 3 has type ‘group_t’ {aka ‘list_*’} [-Wformat=] 1002 | "error group %X: recomputed consensus (%s) not matching dynamic consensus (%s) (so i'm glad i coded this test)\n fragment: %s\n", | ~^ | | | unsigned int 1003 | current_read_group, substarters[*nb_consensuses], | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} g++ -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o commons.o -c commons.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o Loader.o -c Loader.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 Loader.cpp: In function ‘void load_json_rec_global(json_value*, int)’: Loader.cpp:114:45: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 114 | printf("adding node %s = %ld\n", value->string_value, global_dbg->all_nodes.size()); | ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long int std::vector::size_type {aka unsigned int} | %d g++ -o ReadMapper.o -c ReadMapper.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o kissreads_graph block_allocator.o DeBruijnGraph.o Fragment.o json.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o commons.o ../minia/Kmer.o ../minia/Bank.o Loader.o ReadMapper.o KissReadsGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial make[2]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/kissreads_graph' cd kissreads && make k=29 make[2]: Entering directory '/<>/mapsembler2-2.2.4+dfsg/kissreads' gcc -o src/coherent_algorithm.o -c src/coherent_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/commons.o -c src/commons.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/couple.o -c src/couple.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/extension_algorithm.o -c src/extension_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/fragment_index.o -c src/fragment_index.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/kissReads.o -c src/kissReads.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/list.o -c src/list.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/outputs.o -c src/outputs.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/interface_libchash.o -c src/interface_libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/libchash.o -c src/libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/<>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ src/libchash.c: In function ‘HashFind’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1221:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1221 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashFindLast’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1226:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1226 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashFirstBucket’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1290:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1290 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashNextBucket’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1300:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1300 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashDoLoad’: src/libchash.c:1407:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1407 | fread(szMagicKey, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1416:4: note: in expansion of macro ‘READ_UL’ 1416 | READ_UL(fp, ht->cchKey); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1417:4: note: in expansion of macro ‘READ_UL’ 1417 | READ_UL(fp, ht->cItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1418:4: note: in expansion of macro ‘READ_UL’ 1418 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1421:4: note: in expansion of macro ‘READ_UL’ 1421 | READ_UL(fp, cchKey); | ^~~~~~~ src/libchash.c:1423:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1423 | fread(rgchKeys, 1, cchKey, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1428:7: note: in expansion of macro ‘READ_UL’ 1428 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ src/libchash.c: In function ‘SparseRead’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:622:4: note: in expansion of macro ‘READ_UL’ 622 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:627:3: note: in expansion of macro ‘READ_UL’ 627 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ gcc -o kissreads src/coherent_algorithm.o src/commons.o src/couple.o src/extension_algorithm.o src/fragment_index.o src/kissReads.o src/list.o src/outputs.o src/interface_libchash.o src/libchash.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lm -O3 -lz -lgomp /usr/bin/ld: src/commons.o:././include/commons.h:96: multiple definition of `nbits_nbseeds'; src/coherent_algorithm.o:././include/commons.h:96: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:95: multiple definition of `mask_offset_seed'; src/coherent_algorithm.o:././include/commons.h:95: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:94: multiple definition of `mask_nbseed'; src/coherent_algorithm.o:././include/commons.h:94: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:92: multiple definition of `sum_memory_strdup'; src/coherent_algorithm.o:././include/commons.h:92: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:91: multiple definition of `sum_memory'; src/coherent_algorithm.o:././include/commons.h:91: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:89: multiple definition of `file'; src/coherent_algorithm.o:././include/commons.h:89: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:71: multiple definition of `anykmer'; src/coherent_algorithm.o:././include/commons.h:71: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:70: multiple definition of `size_before_reads_starting'; src/coherent_algorithm.o:././include/commons.h:70: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:69: multiple definition of `number_of_read_sets'; src/coherent_algorithm.o:././include/commons.h:69: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:68: multiple definition of `nb_event_sets'; src/coherent_algorithm.o:././include/commons.h:68: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:67: multiple definition of `average_size_reads'; src/coherent_algorithm.o:././include/commons.h:67: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:60: multiple definition of `mask_code_seed'; src/coherent_algorithm.o:././include/commons.h:60: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:59: multiple definition of `minimal_read_overlap'; src/coherent_algorithm.o:././include/commons.h:59: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:58: multiple definition of `size_seeds'; src/coherent_algorithm.o:././include/commons.h:58: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:57: multiple definition of `kmer_size'; src/coherent_algorithm.o:././include/commons.h:57: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:56: multiple definition of `quality'; src/coherent_algorithm.o:././include/commons.h:56: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:55: multiple definition of `silent'; src/coherent_algorithm.o:././include/commons.h:55: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:54: multiple definition of `standard_fasta'; src/coherent_algorithm.o:././include/commons.h:54: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:53: multiple definition of `nuc'; src/coherent_algorithm.o:././include/commons.h:53: first defined here /usr/bin/ld: src/commons.o:././include/commons.h:52: multiple definition of `comp'; src/coherent_algorithm.o:././include/commons.h:52: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:96: multiple definition of `nbits_nbseeds'; src/coherent_algorithm.o:././include/commons.h:96: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:95: multiple definition of `mask_offset_seed'; src/coherent_algorithm.o:././include/commons.h:95: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:94: multiple definition of `mask_nbseed'; src/coherent_algorithm.o:././include/commons.h:94: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:92: multiple definition of `sum_memory_strdup'; src/coherent_algorithm.o:././include/commons.h:92: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:91: multiple definition of `sum_memory'; src/coherent_algorithm.o:././include/commons.h:91: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:89: multiple definition of `file'; src/coherent_algorithm.o:././include/commons.h:89: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:71: multiple definition of `anykmer'; src/coherent_algorithm.o:././include/commons.h:71: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:70: multiple definition of `size_before_reads_starting'; src/coherent_algorithm.o:././include/commons.h:70: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:69: multiple definition of `number_of_read_sets'; src/coherent_algorithm.o:././include/commons.h:69: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:68: multiple definition of `nb_event_sets'; src/coherent_algorithm.o:././include/commons.h:68: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:67: multiple definition of `average_size_reads'; src/coherent_algorithm.o:././include/commons.h:67: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:60: multiple definition of `mask_code_seed'; src/coherent_algorithm.o:././include/commons.h:60: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:59: multiple definition of `minimal_read_overlap'; src/coherent_algorithm.o:././include/commons.h:59: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:58: multiple definition of `size_seeds'; src/coherent_algorithm.o:././include/commons.h:58: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:57: multiple definition of `kmer_size'; src/coherent_algorithm.o:././include/commons.h:57: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:56: multiple definition of `quality'; src/coherent_algorithm.o:././include/commons.h:56: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:55: multiple definition of `silent'; src/coherent_algorithm.o:././include/commons.h:55: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:54: multiple definition of `standard_fasta'; src/coherent_algorithm.o:././include/commons.h:54: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:53: multiple definition of `nuc'; src/coherent_algorithm.o:././include/commons.h:53: first defined here /usr/bin/ld: src/couple.o:././include/commons.h:52: multiple definition of `comp'; src/coherent_algorithm.o:././include/commons.h:52: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:96: multiple definition of `nbits_nbseeds'; src/coherent_algorithm.o:././include/commons.h:96: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:95: multiple definition of `mask_offset_seed'; 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multiple definition of `size_before_reads_starting'; src/coherent_algorithm.o:././include/commons.h:70: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:69: multiple definition of `number_of_read_sets'; src/coherent_algorithm.o:././include/commons.h:69: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:68: multiple definition of `nb_event_sets'; src/coherent_algorithm.o:././include/commons.h:68: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:67: multiple definition of `average_size_reads'; src/coherent_algorithm.o:././include/commons.h:67: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:60: multiple definition of `mask_code_seed'; src/coherent_algorithm.o:././include/commons.h:60: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:59: multiple definition of `minimal_read_overlap'; src/coherent_algorithm.o:././include/commons.h:59: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:58: multiple definition of `size_seeds'; src/coherent_algorithm.o:././include/commons.h:58: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:57: multiple definition of `kmer_size'; src/coherent_algorithm.o:././include/commons.h:57: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:56: multiple definition of `quality'; src/coherent_algorithm.o:././include/commons.h:56: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:55: multiple definition of `silent'; src/coherent_algorithm.o:././include/commons.h:55: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:54: multiple definition of `standard_fasta'; src/coherent_algorithm.o:././include/commons.h:54: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:53: multiple definition of `nuc'; src/coherent_algorithm.o:././include/commons.h:53: first defined here /usr/bin/ld: src/extension_algorithm.o:././include/commons.h:52: multiple definition of `comp'; src/coherent_algorithm.o:././include/commons.h:52: first defined here /usr/bin/ld: src/fragment_index.o:././include/fragment_index.h:55: multiple definition of `seed_table'; src/extension_algorithm.o:././include/fragment_index.h:55: first defined here /usr/bin/ld: src/fragment_index.o:././include/fragment_index.h:54: multiple definition of `seeds_count'; src/extension_algorithm.o:././include/fragment_index.h:54: first defined here /usr/bin/ld: src/fragment_index.o:././include/fragment_index.h:53: multiple definition of `seeds'; src/extension_algorithm.o:././include/fragment_index.h:53: first defined here /usr/bin/ld: src/fragment_index.o:././include/fragment_index.h:52: multiple definition of `number_of_starters'; src/extension_algorithm.o:././include/fragment_index.h:52: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:96: multiple definition of `nbits_nbseeds'; src/coherent_algorithm.o:././include/commons.h:96: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:95: multiple definition of `mask_offset_seed'; src/coherent_algorithm.o:././include/commons.h:95: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:94: multiple definition of `mask_nbseed'; src/coherent_algorithm.o:././include/commons.h:94: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:92: multiple definition of `sum_memory_strdup'; src/coherent_algorithm.o:././include/commons.h:92: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:91: multiple definition of `sum_memory'; src/coherent_algorithm.o:././include/commons.h:91: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:89: multiple definition of `file'; src/coherent_algorithm.o:././include/commons.h:89: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:71: multiple definition of `anykmer'; src/coherent_algorithm.o:././include/commons.h:71: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:70: multiple definition of `size_before_reads_starting'; src/coherent_algorithm.o:././include/commons.h:70: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:69: multiple definition of `number_of_read_sets'; src/coherent_algorithm.o:././include/commons.h:69: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:68: multiple definition of `nb_event_sets'; src/coherent_algorithm.o:././include/commons.h:68: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:67: multiple definition of `average_size_reads'; src/coherent_algorithm.o:././include/commons.h:67: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:60: multiple definition of `mask_code_seed'; src/coherent_algorithm.o:././include/commons.h:60: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:59: multiple definition of `minimal_read_overlap'; src/coherent_algorithm.o:././include/commons.h:59: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:58: multiple definition of `size_seeds'; src/coherent_algorithm.o:././include/commons.h:58: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:57: multiple definition of `kmer_size'; src/coherent_algorithm.o:././include/commons.h:57: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:56: multiple definition of `quality'; src/coherent_algorithm.o:././include/commons.h:56: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:55: multiple definition of `silent'; src/coherent_algorithm.o:././include/commons.h:55: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:54: multiple definition of `standard_fasta'; src/coherent_algorithm.o:././include/commons.h:54: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:53: multiple definition of `nuc'; src/coherent_algorithm.o:././include/commons.h:53: first defined here /usr/bin/ld: src/fragment_index.o:././include/commons.h:52: multiple definition of `comp'; src/coherent_algorithm.o:././include/commons.h:52: first defined here /usr/bin/ld: src/kissReads.o:././include/fragment_index.h:55: multiple definition of `seed_table'; src/extension_algorithm.o:././include/fragment_index.h:55: first defined here /usr/bin/ld: src/kissReads.o:././include/fragment_index.h:54: multiple definition of `seeds_count'; src/extension_algorithm.o:././include/fragment_index.h:54: first defined here /usr/bin/ld: src/kissReads.o:././include/fragment_index.h:53: multiple definition of `seeds'; src/extension_algorithm.o:././include/fragment_index.h:53: first defined here /usr/bin/ld: src/kissReads.o:././include/fragment_index.h:52: multiple definition of `number_of_starters'; src/extension_algorithm.o:././include/fragment_index.h:52: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:96: multiple definition of `nbits_nbseeds'; src/coherent_algorithm.o:././include/commons.h:96: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:95: multiple definition of `mask_offset_seed'; src/coherent_algorithm.o:././include/commons.h:95: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:94: multiple definition of `mask_nbseed'; src/coherent_algorithm.o:././include/commons.h:94: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:92: multiple definition of `sum_memory_strdup'; src/coherent_algorithm.o:././include/commons.h:92: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:91: multiple definition of `sum_memory'; src/coherent_algorithm.o:././include/commons.h:91: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:89: multiple definition of `file'; src/coherent_algorithm.o:././include/commons.h:89: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:71: multiple definition of `anykmer'; src/coherent_algorithm.o:././include/commons.h:71: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:70: multiple definition of `size_before_reads_starting'; src/coherent_algorithm.o:././include/commons.h:70: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:69: multiple definition of `number_of_read_sets'; src/coherent_algorithm.o:././include/commons.h:69: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:68: multiple definition of `nb_event_sets'; src/coherent_algorithm.o:././include/commons.h:68: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:67: multiple definition of `average_size_reads'; src/coherent_algorithm.o:././include/commons.h:67: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:60: multiple definition of `mask_code_seed'; src/coherent_algorithm.o:././include/commons.h:60: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:59: multiple definition of `minimal_read_overlap'; src/coherent_algorithm.o:././include/commons.h:59: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:58: multiple definition of `size_seeds'; src/coherent_algorithm.o:././include/commons.h:58: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:57: multiple definition of `kmer_size'; src/coherent_algorithm.o:././include/commons.h:57: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:56: multiple definition of `quality'; src/coherent_algorithm.o:././include/commons.h:56: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:55: multiple definition of `silent'; src/coherent_algorithm.o:././include/commons.h:55: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:54: multiple definition of `standard_fasta'; src/coherent_algorithm.o:././include/commons.h:54: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:53: multiple definition of `nuc'; src/coherent_algorithm.o:././include/commons.h:53: first defined here /usr/bin/ld: src/kissReads.o:././include/commons.h:52: multiple definition of `comp'; src/coherent_algorithm.o:././include/commons.h:52: first defined here /usr/bin/ld: src/list.o:././include/commons.h:96: multiple definition of `nbits_nbseeds'; src/coherent_algorithm.o:././include/commons.h:96: first defined here /usr/bin/ld: src/list.o:././include/commons.h:95: multiple definition of `mask_offset_seed'; src/coherent_algorithm.o:././include/commons.h:95: first defined here /usr/bin/ld: src/list.o:././include/commons.h:94: multiple definition of `mask_nbseed'; src/coherent_algorithm.o:././include/commons.h:94: first defined here /usr/bin/ld: src/list.o:././include/commons.h:92: multiple definition of `sum_memory_strdup'; src/coherent_algorithm.o:././include/commons.h:92: first defined here /usr/bin/ld: src/list.o:././include/commons.h:91: multiple definition of `sum_memory'; src/coherent_algorithm.o:././include/commons.h:91: first defined here /usr/bin/ld: src/list.o:././include/commons.h:89: multiple definition of `file'; src/coherent_algorithm.o:././include/commons.h:89: first defined here /usr/bin/ld: src/list.o:././include/commons.h:71: multiple definition of `anykmer'; src/coherent_algorithm.o:././include/commons.h:71: first defined here /usr/bin/ld: src/list.o:././include/commons.h:70: multiple definition of `size_before_reads_starting'; src/coherent_algorithm.o:././include/commons.h:70: first defined here /usr/bin/ld: src/list.o:././include/commons.h:69: multiple definition of `number_of_read_sets'; src/coherent_algorithm.o:././include/commons.h:69: first defined here /usr/bin/ld: src/list.o:././include/commons.h:68: multiple definition of `nb_event_sets'; src/coherent_algorithm.o:././include/commons.h:68: first defined here /usr/bin/ld: src/list.o:././include/commons.h:67: multiple definition of `average_size_reads'; src/coherent_algorithm.o:././include/commons.h:67: first defined here /usr/bin/ld: src/list.o:././include/commons.h:60: multiple definition of `mask_code_seed'; src/coherent_algorithm.o:././include/commons.h:60: first defined here /usr/bin/ld: src/list.o:././include/commons.h:59: multiple definition of `minimal_read_overlap'; src/coherent_algorithm.o:././include/commons.h:59: first defined here /usr/bin/ld: src/list.o:././include/commons.h:58: multiple definition of `size_seeds'; src/coherent_algorithm.o:././include/commons.h:58: first defined here /usr/bin/ld: src/list.o:././include/commons.h:57: multiple definition of `kmer_size'; src/coherent_algorithm.o:././include/commons.h:57: first defined here /usr/bin/ld: src/list.o:././include/commons.h:56: multiple definition of `quality'; src/coherent_algorithm.o:././include/commons.h:56: first defined here /usr/bin/ld: src/list.o:././include/commons.h:55: multiple definition of `silent'; src/coherent_algorithm.o:././include/commons.h:55: first defined here /usr/bin/ld: src/list.o:././include/commons.h:54: multiple definition of `standard_fasta'; src/coherent_algorithm.o:././include/commons.h:54: first defined here /usr/bin/ld: src/list.o:././include/commons.h:53: multiple definition of `nuc'; src/coherent_algorithm.o:././include/commons.h:53: first defined here /usr/bin/ld: src/list.o:././include/commons.h:52: multiple definition of `comp'; src/coherent_algorithm.o:././include/commons.h:52: first defined here /usr/bin/ld: src/outputs.o:././include/fragment_index.h:55: multiple definition of `seed_table'; src/extension_algorithm.o:././include/fragment_index.h:55: first defined here /usr/bin/ld: src/outputs.o:././include/fragment_index.h:54: multiple definition of `seeds_count'; src/extension_algorithm.o:././include/fragment_index.h:54: first defined here /usr/bin/ld: src/outputs.o:././include/fragment_index.h:53: multiple definition of `seeds'; src/extension_algorithm.o:././include/fragment_index.h:53: first defined here /usr/bin/ld: src/outputs.o:././include/fragment_index.h:52: multiple definition of `number_of_starters'; src/extension_algorithm.o:././include/fragment_index.h:52: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:96: multiple definition of `nbits_nbseeds'; src/coherent_algorithm.o:././include/commons.h:96: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:95: multiple definition of `mask_offset_seed'; src/coherent_algorithm.o:././include/commons.h:95: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:94: multiple definition of `mask_nbseed'; src/coherent_algorithm.o:././include/commons.h:94: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:92: multiple definition of `sum_memory_strdup'; src/coherent_algorithm.o:././include/commons.h:92: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:91: multiple definition of `sum_memory'; src/coherent_algorithm.o:././include/commons.h:91: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:89: multiple definition of `file'; src/coherent_algorithm.o:././include/commons.h:89: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:71: multiple definition of `anykmer'; src/coherent_algorithm.o:././include/commons.h:71: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:70: multiple definition of `size_before_reads_starting'; src/coherent_algorithm.o:././include/commons.h:70: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:69: multiple definition of `number_of_read_sets'; src/coherent_algorithm.o:././include/commons.h:69: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:68: multiple definition of `nb_event_sets'; src/coherent_algorithm.o:././include/commons.h:68: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:67: multiple definition of `average_size_reads'; src/coherent_algorithm.o:././include/commons.h:67: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:60: multiple definition of `mask_code_seed'; src/coherent_algorithm.o:././include/commons.h:60: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:59: multiple definition of `minimal_read_overlap'; src/coherent_algorithm.o:././include/commons.h:59: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:58: multiple definition of `size_seeds'; src/coherent_algorithm.o:././include/commons.h:58: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:57: multiple definition of `kmer_size'; src/coherent_algorithm.o:././include/commons.h:57: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:56: multiple definition of `quality'; src/coherent_algorithm.o:././include/commons.h:56: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:55: multiple definition of `silent'; src/coherent_algorithm.o:././include/commons.h:55: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:54: multiple definition of `standard_fasta'; src/coherent_algorithm.o:././include/commons.h:54: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:53: multiple definition of `nuc'; src/coherent_algorithm.o:././include/commons.h:53: first defined here /usr/bin/ld: src/outputs.o:././include/commons.h:52: multiple definition of `comp'; src/coherent_algorithm.o:././include/commons.h:52: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:96: multiple definition of `nbits_nbseeds'; src/coherent_algorithm.o:././include/commons.h:96: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:95: multiple definition of `mask_offset_seed'; src/coherent_algorithm.o:././include/commons.h:95: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:94: multiple definition of `mask_nbseed'; src/coherent_algorithm.o:././include/commons.h:94: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:92: multiple definition of `sum_memory_strdup'; src/coherent_algorithm.o:././include/commons.h:92: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:91: multiple definition of `sum_memory'; src/coherent_algorithm.o:././include/commons.h:91: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:89: multiple definition of `file'; src/coherent_algorithm.o:././include/commons.h:89: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:71: multiple definition of `anykmer'; src/coherent_algorithm.o:././include/commons.h:71: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:70: multiple definition of `size_before_reads_starting'; src/coherent_algorithm.o:././include/commons.h:70: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:69: multiple definition of `number_of_read_sets'; src/coherent_algorithm.o:././include/commons.h:69: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:68: multiple definition of `nb_event_sets'; src/coherent_algorithm.o:././include/commons.h:68: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:67: multiple definition of `average_size_reads'; src/coherent_algorithm.o:././include/commons.h:67: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:60: multiple definition of `mask_code_seed'; src/coherent_algorithm.o:././include/commons.h:60: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:59: multiple definition of `minimal_read_overlap'; src/coherent_algorithm.o:././include/commons.h:59: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:58: multiple definition of `size_seeds'; src/coherent_algorithm.o:././include/commons.h:58: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:57: multiple definition of `kmer_size'; src/coherent_algorithm.o:././include/commons.h:57: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:56: multiple definition of `quality'; src/coherent_algorithm.o:././include/commons.h:56: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:55: multiple definition of `silent'; src/coherent_algorithm.o:././include/commons.h:55: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:54: multiple definition of `standard_fasta'; src/coherent_algorithm.o:././include/commons.h:54: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:53: multiple definition of `nuc'; src/coherent_algorithm.o:././include/commons.h:53: first defined here /usr/bin/ld: src/interface_libchash.o:././include/commons.h:52: multiple definition of `comp'; src/coherent_algorithm.o:././include/commons.h:52: first defined here collect2: error: ld returned 1 exit status make[2]: *** [Makefile:58: kissreads] Error 1 make[2]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg/kissreads' make[1]: *** [debian/rules:30: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>/mapsembler2-2.2.4+dfsg' make: *** [debian/rules:23: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2021-01-27T00:39:45Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 727 Distribution: hirsute Fail-Stage: build Host Architecture: armhf Install-Time: 57 Job: mapsembler2_2.2.4+dfsg-4.dsc Machine Architecture: arm64 Package: mapsembler2 Package-Time: 789 Source-Version: 2.2.4+dfsg-4 Space: n/a Status: attempted Version: 2.2.4+dfsg-4 -------------------------------------------------------------------------------- Finished at 2021-01-27T00:39:45Z Build needed 00:13:09, no disk space E: Build failure (dpkg-buildpackage died) RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20653883 Scanning for processes to kill in build PACKAGEBUILD-20653883