https://launchpad.net/ubuntu/+archive/test-rebuild-20201216-hirsute-gcc11/+build/20672233 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-064 4.15.0-135-generic #139-Ubuntu SMP Mon Jan 18 17:40:29 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_194~476~ubuntu18.04.1 python3-lpbuildd_194~476~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 6 Feb 15:30:33 ntpdate[1656]: adjust time server 10.211.37.1 offset 0.003996 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20672233 --image-type chroot /home/buildd/filecache-default/6663ab897c1b9684e4da3138ea2f806b3d40e7b1 Creating target for build PACKAGEBUILD-20672233 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20672233 Starting target for build PACKAGEBUILD-20672233 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20672233 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu hirsute main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute main' 'deb http://ftpmaster.internal/ubuntu hirsute main universe' Overriding sources.list in build-PACKAGEBUILD-20672233 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20672233 Adding trusted keys to build-PACKAGEBUILD-20672233 Warning: apt-key is deprecated. Manage keyring files in trusted.gpg.d instead (see apt-key(8)). OK Warning: apt-key is deprecated. Manage keyring files in trusted.gpg.d instead (see apt-key(8)). /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20672233 Updating target for build PACKAGEBUILD-20672233 Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu hirsute InRelease [23.8 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute InRelease [269 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute InRelease [17.6 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute InRelease [17.6 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu hirsute/main armhf Packages [15.1 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu hirsute/main Translation-en [10.0 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main armhf Packages [1344 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [510 kB] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf Packages [11.7 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/universe armhf Packages [12.5 MB] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main Translation-en [6856 B] Get:12 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute/main armhf Packages [14.9 kB] Get:13 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute/main Translation-en [11.0 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5434 kB] Fetched 20.2 MB in 8s (2427 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-10 libisl22 libperl5.30 libstdc++-10-dev perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-11 g++-11 gcc-11 gcc-11-base libgcc-11-dev libisl23 libperl5.32 libstdc++-11-dev libxxhash0 lto-disabled-list perl-modules-5.32 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils coreutils cpp cpp-10 dash dpkg dpkg-dev fakeroot g++ g++-10 gcc gcc-10 gcc-10-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libjson-c5 libk5crypto3 libkrb5-3 libkrb5support0 liblockfile-bin liblockfile1 liblz4-1 libmount1 libmpc3 libncurses6 libncursesw6 libnettle8 libnpth0 libp11-kit0 libpcre2-8-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login mount ncurses-base ncurses-bin openssl passwd patch perl perl-base readline-common sensible-utils systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata util-linux 119 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 238 MB of archives. After this operation, 549 MB of additional disk space will be used. Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf gcc-11-base armhf 11-20210123-1ubuntu1 [19.0 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libgcc-s1 armhf 11-20210123-1ubuntu1 [36.3 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libstdc++6 armhf 11-20210123-1ubuntu1 [499 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libgomp1 armhf 11-20210123-1ubuntu1 [91.0 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libatomic1 armhf 11-20210123-1ubuntu1 [7232 B] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libasan6 armhf 11-20210123-1ubuntu1 [2004 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libubsan1 armhf 11-20210123-1ubuntu1 [807 kB] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libcc1-0 armhf 11-20210123-1ubuntu1 [41.2 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main armhf libcrypt-dev armhf 1:4.4.17-1ubuntu1 [113 kB] Get:10 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf cpp-11 armhf 11-20210123-1ubuntu1 [49.7 MB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main armhf libc6-dev armhf 2.32-0ubuntu6 [1582 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main armhf libc-dev-bin armhf 2.32-0ubuntu6 [29.6 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main armhf libcrypt1 armhf 1:4.4.17-1ubuntu1 [86.7 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main armhf linux-libc-dev armhf 5.8.0-36.40+21.04.1 [1108 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main armhf libtirpc-common all 1.3.1-1 [7452 B] Get:16 http://ftpmaster.internal/ubuntu hirsute/main armhf libk5crypto3 armhf 1.18.3-4 [74.1 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main armhf libgssapi-krb5-2 armhf 1.18.3-4 [107 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main armhf libkrb5-3 armhf 1.18.3-4 [282 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main armhf libkrb5support0 armhf 1.18.3-4 [27.9 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main armhf libssl1.1 armhf 1.1.1f-1ubuntu5 [1079 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main armhf libtirpc-dev armhf 1.3.1-1 [174 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main armhf libtirpc3 armhf 1.3.1-1 [65.6 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main armhf libc6 armhf 2.32-0ubuntu6 [2124 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main armhf base-files armhf 11ubuntu16 [60.2 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main armhf bash armhf 5.1-1ubuntu1 [606 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main armhf bsdutils armhf 1:2.36.1-1ubuntu2 [78.6 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main armhf coreutils armhf 8.32-4ubuntu2 [1207 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main armhf tar armhf 1.32+dfsg-1 [249 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main armhf dpkg armhf 1.20.7.1ubuntu2 [1212 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main armhf dash armhf 0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 [78.9 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main armhf grep armhf 3.6-1 [143 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main armhf gzip armhf 1.10-2ubuntu3 [90.9 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main armhf login armhf 1:4.8.1-1ubuntu8 [217 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main armhf libncurses6 armhf 6.2+20201114-2 [79.9 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main armhf libncursesw6 armhf 6.2+20201114-2 [106 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main armhf libtinfo6 armhf 6.2+20201114-2 [74.0 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main armhf ncurses-bin armhf 6.2+20201114-2 [165 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main armhf perl-modules-5.32 all 5.32.0-6 [2754 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main armhf libperl5.32 armhf 5.32.0-6 [3357 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main armhf perl armhf 5.32.0-6 [225 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main armhf perl-base armhf 5.32.0-6 [1423 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main armhf libgdbm6 armhf 1.19-2 [24.6 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main armhf libgdbm-compat4 armhf 1.19-2 [5896 B] Get:44 http://ftpmaster.internal/ubuntu hirsute/main armhf util-linux armhf 2.36.1-1ubuntu2 [1005 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main armhf libdebconfclient0 armhf 0.256ubuntu1 [5712 B] Get:46 http://ftpmaster.internal/ubuntu hirsute/main armhf base-passwd armhf 3.5.48 [46.0 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main armhf init-system-helpers all 1.60 [37.8 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main armhf libc-bin armhf 2.32-0ubuntu6 [505 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main armhf ncurses-base all 6.2+20201114-2 [18.4 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main armhf sysvinit-utils armhf 2.96-5ubuntu1 [19.2 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main armhf libxxhash0 armhf 0.8.0-2 [21.8 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcrypt20 armhf 1.8.7-2ubuntu1 [364 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main armhf liblz4-1 armhf 1.9.3-0ubuntu1 [49.4 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd-sysv armhf 247.1-4ubuntu1 [10.3 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main armhf libaudit-common all 1:2.8.5-3ubuntu3 [4048 B] Get:56 http://ftpmaster.internal/ubuntu hirsute/main armhf libcap-ng0 armhf 0.7.9-2.2build1 [9672 B] Get:57 http://ftpmaster.internal/ubuntu hirsute/main armhf libaudit1 armhf 1:2.8.5-3ubuntu3 [36.1 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main armhf libpcre2-8-0 armhf 10.35-2ubuntu1 [169 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main armhf libselinux1 armhf 3.1-2build2 [61.0 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage-common all 3.1-1build2 [10.0 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage1 armhf 3.1-1build2 [75.6 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main armhf passwd armhf 1:4.8.1-1ubuntu8 [751 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main armhf adduser all 3.118ubuntu5 [156 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd-timesyncd armhf 247.1-4ubuntu1 [27.7 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main armhf libapparmor1 armhf 3.0.0-0ubuntu5 [30.4 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main armhf libblkid1 armhf 2.36.1-1ubuntu2 [117 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main armhf libudev1 armhf 247.1-4ubuntu1 [61.5 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main armhf libdevmapper1.02.1 armhf 2:1.02.167-1ubuntu4 [120 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main armhf libjson-c5 armhf 0.15-2 [27.2 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main armhf libuuid1 armhf 2.36.1-1ubuntu2 [20.4 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main armhf libcryptsetup12 armhf 2:2.3.4-1ubuntu1 [174 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main armhf libnettle8 armhf 3.7-2 [158 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main armhf libhogweed6 armhf 3.7-2 [183 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main armhf libidn2-0 armhf 2.3.0-5 [49.6 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main armhf libp11-kit0 armhf 0.23.22-1 [170 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main armhf libgnutls30 armhf 3.7.0-5ubuntu1 [860 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main armhf libip4tc2 armhf 1.8.5-3ubuntu4 [16.7 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main armhf libseccomp2 armhf 2.4.3-1ubuntu6 [32.5 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main armhf mount armhf 2.36.1-1ubuntu2 [113 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd armhf 247.1-4ubuntu1 [3806 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main armhf libsystemd0 armhf 247.1-4ubuntu1 [250 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main armhf libzstd1 armhf 1.4.8+dfsg-1 [258 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main armhf libapt-pkg6.0 armhf 2.1.18 [819 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main armhf gpgv armhf 2.2.20-1ubuntu2 [172 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main armhf apt armhf 2.1.18 [1275 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main armhf init armhf 1.60 [6040 B] Get:87 http://ftpmaster.internal/ubuntu hirsute/main armhf libacl1 armhf 2.2.53-9 [14.9 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main armhf libattr1 armhf 1:2.4.48-6 [11.7 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main armhf libmount1 armhf 2.36.1-1ubuntu2 [131 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/main armhf libsmartcols1 armhf 2.36.1-1ubuntu2 [82.3 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/main armhf g++-10 armhf 10.2.1-6ubuntu1 [7613 kB] Get:92 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libgcc-11-dev armhf 11-20210123-1ubuntu1 [739 kB] Get:93 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf gcc-11 armhf 11-20210123-1ubuntu1 [56.8 MB] Get:94 http://ftpmaster.internal/ubuntu hirsute/main armhf gcc-10 armhf 10.2.1-6ubuntu1 [13.6 MB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main armhf libstdc++-10-dev armhf 10.2.1-6ubuntu1 [1815 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcc-10-dev armhf 10.2.1-6ubuntu1 [717 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main armhf libisl23 armhf 0.23-1 [513 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute/main armhf libmpc3 armhf 1.2.0-1 [36.1 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main armhf libctf0 armhf 2.36-2ubuntu1 [82.2 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main armhf libctf-nobfd0 armhf 2.36-2ubuntu1 [81.2 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main armhf binutils-arm-linux-gnueabihf armhf 2.36-2ubuntu1 [2481 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/main armhf libbinutils armhf 2.36-2ubuntu1 [420 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute/main armhf binutils armhf 2.36-2ubuntu1 [3372 B] Get:104 http://ftpmaster.internal/ubuntu hirsute/main armhf binutils-common armhf 2.36-2ubuntu1 [216 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/main armhf cpp-10 armhf 10.2.1-6ubuntu1 [6637 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute/main armhf gcc-10-base armhf 10.2.1-6ubuntu1 [19.7 kB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main armhf sensible-utils all 0.0.14 [13.5 kB] Get:108 http://ftpmaster.internal/ubuntu hirsute/main armhf libcap2 armhf 1:2.44-1 [14.7 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/main armhf readline-common all 8.1-1 [54.1 kB] Get:110 http://ftpmaster.internal/ubuntu hirsute/main armhf libreadline8 armhf 8.1-1 [115 kB] Get:111 http://ftpmaster.internal/ubuntu hirsute/main armhf libsqlite3-0 armhf 3.34.0-1 [504 kB] Get:112 http://ftpmaster.internal/ubuntu hirsute/main armhf openssl armhf 1.1.1f-1ubuntu5 [597 kB] Get:113 http://ftpmaster.internal/ubuntu hirsute/main armhf tzdata all 2021a-1ubuntu1 [294 kB] Get:114 http://ftpmaster.internal/ubuntu hirsute/main armhf dpkg-dev all 1.20.7.1ubuntu2 [935 kB] Get:115 http://ftpmaster.internal/ubuntu hirsute/main armhf libdpkg-perl all 1.20.7.1ubuntu2 [233 kB] Get:116 http://ftpmaster.internal/ubuntu hirsute/main armhf patch armhf 2.7.6-7 [102 kB] Get:117 http://ftpmaster.internal/ubuntu hirsute/main armhf lto-disabled-list all 1 [1996 B] Get:118 http://ftpmaster.internal/ubuntu hirsute/main armhf libfakeroot armhf 1.25.3-1.1 [23.2 kB] Get:119 http://ftpmaster.internal/ubuntu hirsute/main armhf fakeroot armhf 1.25.3-1.1 [60.9 kB] Get:120 http://ftpmaster.internal/ubuntu hirsute/main armhf libnpth0 armhf 1.6-3 [6980 B] Get:121 http://ftpmaster.internal/ubuntu hirsute/main armhf gpg armhf 2.2.20-1ubuntu2 [429 kB] Get:122 http://ftpmaster.internal/ubuntu hirsute/main armhf gpgconf armhf 2.2.20-1ubuntu2 [108 kB] Get:123 http://ftpmaster.internal/ubuntu hirsute/main armhf gpg-agent armhf 2.2.20-1ubuntu2 [196 kB] Get:124 http://ftpmaster.internal/ubuntu hirsute/main armhf liblockfile-bin armhf 1.17-1 [10.8 kB] Get:125 http://ftpmaster.internal/ubuntu hirsute/main armhf liblockfile1 armhf 1.17-1 [5616 B] Get:126 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libstdc++-11-dev armhf 11-20210123-1ubuntu1 [1846 kB] Get:127 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf g++-11 armhf 11-20210123-1ubuntu1 [55.9 MB] Get:128 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute/main armhf g++ armhf 4:11-20201114-1ubuntu1 [1620 B] Get:129 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute/main armhf gcc armhf 4:11-20201114-1ubuntu1 [5236 B] Get:130 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute/main armhf cpp armhf 4:11-20201114-1ubuntu1 [27.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 238 MB in 12s (20.3 MB/s) (Reading database ... 12723 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.17-1ubuntu1_armhf.deb ... Unpacking libcrypt-dev:armhf (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../libc6-dev_2.32-0ubuntu6_armhf.deb ... Unpacking libc6-dev:armhf (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.32-0ubuntu6_armhf.deb ... Unpacking libc-dev-bin (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libcrypt1_1%3a4.4.17-1ubuntu1_armhf.deb ... Unpacking libcrypt1:armhf (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:armhf (1:4.4.17-1ubuntu1) ... (Reading database ... 12722 files and directories currently installed.) Preparing to unpack .../0-linux-libc-dev_5.8.0-36.40+21.04.1_armhf.deb ... Unpacking linux-libc-dev:armhf (5.8.0-36.40+21.04.1) over (5.8.0-25.26) ... Preparing to unpack .../1-libtirpc-common_1.3.1-1_all.deb ... Unpacking libtirpc-common (1.3.1-1) over (1.2.6-1build1) ... Preparing to unpack .../2-libk5crypto3_1.18.3-4_armhf.deb ... Unpacking libk5crypto3:armhf (1.18.3-4) over (1.17-10) ... Preparing to unpack .../3-libgssapi-krb5-2_1.18.3-4_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.18.3-4) over (1.17-10) ... Preparing to unpack .../4-libkrb5-3_1.18.3-4_armhf.deb ... Unpacking libkrb5-3:armhf (1.18.3-4) over (1.17-10) ... Preparing to unpack .../5-libkrb5support0_1.18.3-4_armhf.deb ... Unpacking libkrb5support0:armhf (1.18.3-4) over (1.17-10) ... Preparing to unpack .../6-libssl1.1_1.1.1f-1ubuntu5_armhf.deb ... Unpacking libssl1.1:armhf (1.1.1f-1ubuntu5) over (1.1.1f-1ubuntu4) ... Preparing to unpack .../7-libtirpc-dev_1.3.1-1_armhf.deb ... Unpacking libtirpc-dev:armhf (1.3.1-1) over (1.2.6-1build1) ... Preparing to unpack .../8-libtirpc3_1.3.1-1_armhf.deb ... Unpacking libtirpc3:armhf (1.3.1-1) over (1.2.6-1build1) ... Selecting previously unselected package gcc-11-base:armhf. Preparing to unpack .../9-gcc-11-base_11-20210123-1ubuntu1_armhf.deb ... Unpacking gcc-11-base:armhf (11-20210123-1ubuntu1) ... Setting up gcc-11-base:armhf (11-20210123-1ubuntu1) ... (Reading database ... 12727 files and directories currently installed.) Preparing to unpack .../libgcc-s1_11-20210123-1ubuntu1_armhf.deb ... Unpacking libgcc-s1:armhf (11-20210123-1ubuntu1) over (10.2.0-13ubuntu1) ... Setting up libgcc-s1:armhf (11-20210123-1ubuntu1) ... (Reading database ... 12727 files and directories currently installed.) Preparing to unpack .../libc6_2.32-0ubuntu6_armhf.deb ... Unpacking libc6:armhf (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Setting up libc6:armhf (2.32-0ubuntu6) ... (Reading database ... 12727 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu16_armhf.deb ... Unpacking base-files (11ubuntu16) over (11ubuntu14) ... Setting up base-files (11ubuntu16) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12727 files and directories currently installed.) Preparing to unpack .../bash_5.1-1ubuntu1_armhf.deb ... Unpacking bash (5.1-1ubuntu1) over (5.0-6ubuntu2) ... Setting up bash (5.1-1ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12727 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.36.1-1ubuntu2_armhf.deb ... Unpacking bsdutils (1:2.36.1-1ubuntu2) over (1:2.36-3ubuntu1) ... Setting up bsdutils (1:2.36.1-1ubuntu2) ... (Reading database ... 12727 files and directories currently installed.) Preparing to unpack .../coreutils_8.32-4ubuntu2_armhf.deb ... Unpacking coreutils (8.32-4ubuntu2) over (8.32-3ubuntu1) ... Setting up coreutils (8.32-4ubuntu2) ... (Reading database ... 12727 files and directories currently installed.) Preparing to unpack .../tar_1.32+dfsg-1_armhf.deb ... Unpacking tar (1.32+dfsg-1) over (1.30+dfsg-7) ... Setting up tar (1.32+dfsg-1) ... (Reading database ... 12727 files and directories currently installed.) Preparing to unpack .../dpkg_1.20.7.1ubuntu2_armhf.deb ... Unpacking dpkg (1.20.7.1ubuntu2) over (1.20.5ubuntu2) ... Setting up dpkg (1.20.7.1ubuntu2) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... 12741 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1_armhf.deb ... Unpacking dash (0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1) over (0.5.10.2-7) ... Setting up dash (0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1) ... (Reading database ... 12741 files and directories currently installed.) Preparing to unpack .../archives/grep_3.6-1_armhf.deb ... Unpacking grep (3.6-1) over (3.4-1) ... Setting up grep (3.6-1) ... (Reading database ... 12742 files and directories currently installed.) Preparing to unpack .../gzip_1.10-2ubuntu3_armhf.deb ... Unpacking gzip (1.10-2ubuntu3) over (1.10-2ubuntu1) ... Setting up gzip (1.10-2ubuntu3) ... (Reading database ... 12742 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8.1-1ubuntu8_armhf.deb ... Unpacking login (1:4.8.1-1ubuntu8) over (1:4.8.1-1ubuntu6) ... Setting up login (1:4.8.1-1ubuntu8) ... Installing new version of config file /etc/login.defs ... (Reading database ... 12742 files and directories currently installed.) Preparing to unpack .../libncurses6_6.2+20201114-2_armhf.deb ... Unpacking libncurses6:armhf (6.2+20201114-2) over (6.2-1) ... Preparing to unpack .../libncursesw6_6.2+20201114-2_armhf.deb ... Unpacking libncursesw6:armhf (6.2+20201114-2) over (6.2-1) ... Preparing to unpack .../libtinfo6_6.2+20201114-2_armhf.deb ... Unpacking libtinfo6:armhf (6.2+20201114-2) over (6.2-1) ... Setting up libtinfo6:armhf (6.2+20201114-2) ... (Reading database ... 12742 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.2+20201114-2_armhf.deb ... Unpacking ncurses-bin (6.2+20201114-2) over (6.2-1) ... Setting up ncurses-bin (6.2+20201114-2) ... (Reading database ... 12742 files and directories currently installed.) Preparing to unpack .../perl_5.32.0-6_armhf.deb ... Unpacking perl (5.32.0-6) over (5.30.3-4) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../perl-modules-5.32_5.32.0-6_all.deb ... Unpacking perl-modules-5.32 (5.32.0-6) ... Selecting previously unselected package libperl5.32:armhf. Preparing to unpack .../libperl5.32_5.32.0-6_armhf.deb ... Unpacking libperl5.32:armhf (5.32.0-6) ... Preparing to unpack .../perl-base_5.32.0-6_armhf.deb ... Unpacking perl-base (5.32.0-6) over (5.30.3-4) ... Setting up perl-base (5.32.0-6) ... (Reading database ... 14661 files and directories currently installed.) Preparing to unpack .../libgdbm6_1.19-2_armhf.deb ... Unpacking libgdbm6:armhf (1.19-2) over (1.18.1-5.1) ... Preparing to unpack .../libgdbm-compat4_1.19-2_armhf.deb ... Unpacking libgdbm-compat4:armhf (1.19-2) over (1.18.1-5.1) ... Preparing to unpack .../util-linux_2.36.1-1ubuntu2_armhf.deb ... Unpacking util-linux (2.36.1-1ubuntu2) over (2.36-3ubuntu1) ... Setting up util-linux (2.36.1-1ubuntu2) ... (Reading database ... 14662 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.256ubuntu1_armhf.deb ... Unpacking libdebconfclient0:armhf (0.256ubuntu1) over (0.252ubuntu1) ... Setting up libdebconfclient0:armhf (0.256ubuntu1) ... (Reading database ... 14662 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.48_armhf.deb ... Unpacking base-passwd (3.5.48) over (3.5.47) ... Setting up base-passwd (3.5.48) ... Changing home-directory of irc from /var/run/ircd to /run/ircd 1 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 14662 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.60_all.deb ... Unpacking init-system-helpers (1.60) over (1.58) ... Setting up init-system-helpers (1.60) ... (Reading database ... 14661 files and directories currently installed.) Preparing to unpack .../libc-bin_2.32-0ubuntu6_armhf.deb ... Unpacking libc-bin (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Setting up libc-bin (2.32-0ubuntu6) ... (Reading database ... 14661 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2+20201114-2_all.deb ... Unpacking ncurses-base (6.2+20201114-2) over (6.2-1) ... Setting up ncurses-base (6.2+20201114-2) ... (Reading database ... 14661 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-5ubuntu1_armhf.deb ... Unpacking sysvinit-utils (2.96-5ubuntu1) over (2.96-3ubuntu1) ... Setting up sysvinit-utils (2.96-5ubuntu1) ... Selecting previously unselected package libxxhash0:armhf. (Reading database ... 14661 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.0-2_armhf.deb ... Unpacking libxxhash0:armhf (0.8.0-2) ... Setting up libxxhash0:armhf (0.8.0-2) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.7-2ubuntu1_armhf.deb ... Unpacking libgcrypt20:armhf (1.8.7-2ubuntu1) over (1.8.5-5ubuntu2) ... Setting up libgcrypt20:armhf (1.8.7-2ubuntu1) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.3-0ubuntu1_armhf.deb ... Unpacking liblz4-1:armhf (1.9.3-0ubuntu1) over (1.9.2-2) ... Setting up liblz4-1:armhf (1.9.3-0ubuntu1) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libstdc++6_11-20210123-1ubuntu1_armhf.deb ... Unpacking libstdc++6:armhf (11-20210123-1ubuntu1) over (10.2.0-13ubuntu1) ... Setting up libstdc++6:armhf (11-20210123-1ubuntu1) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../systemd-sysv_247.1-4ubuntu1_armhf.deb ... Unpacking systemd-sysv (247.1-4ubuntu1) over (246.6-1ubuntu1) ... Preparing to unpack .../libaudit-common_1%3a2.8.5-3ubuntu3_all.deb ... Unpacking libaudit-common (1:2.8.5-3ubuntu3) over (1:2.8.5-3ubuntu1) ... Setting up libaudit-common (1:2.8.5-3ubuntu3) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-2.2build1_armhf.deb ... Unpacking libcap-ng0:armhf (0.7.9-2.2build1) over (0.7.9-2.2) ... Setting up libcap-ng0:armhf (0.7.9-2.2build1) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.5-3ubuntu3_armhf.deb ... Unpacking libaudit1:armhf (1:2.8.5-3ubuntu3) over (1:2.8.5-3ubuntu1) ... Setting up libaudit1:armhf (1:2.8.5-3ubuntu3) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.35-2ubuntu1_armhf.deb ... Unpacking libpcre2-8-0:armhf (10.35-2ubuntu1) over (10.34-7) ... Setting up libpcre2-8-0:armhf (10.35-2ubuntu1) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libselinux1_3.1-2build2_armhf.deb ... Unpacking libselinux1:armhf (3.1-2build2) over (3.1-2) ... Setting up libselinux1:armhf (3.1-2build2) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.1-1build2_all.deb ... Unpacking libsemanage-common (3.1-1build2) over (3.1-1) ... Setting up libsemanage-common (3.1-1build2) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libsemanage1_3.1-1build2_armhf.deb ... Unpacking libsemanage1:armhf (3.1-1build2) over (3.1-1) ... Setting up libsemanage1:armhf (3.1-1build2) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.8.1-1ubuntu8_armhf.deb ... Unpacking passwd (1:4.8.1-1ubuntu8) over (1:4.8.1-1ubuntu6) ... Setting up passwd (1:4.8.1-1ubuntu8) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../adduser_3.118ubuntu5_all.deb ... Unpacking adduser (3.118ubuntu5) over (3.118ubuntu2) ... Setting up adduser (3.118ubuntu5) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../systemd-timesyncd_247.1-4ubuntu1_armhf.deb ... Unpacking systemd-timesyncd (247.1-4ubuntu1) over (246.6-1ubuntu1) ... Preparing to unpack .../libapparmor1_3.0.0-0ubuntu5_armhf.deb ... Unpacking libapparmor1:armhf (3.0.0-0ubuntu5) over (3.0.0-0ubuntu1) ... Preparing to unpack .../libblkid1_2.36.1-1ubuntu2_armhf.deb ... Unpacking libblkid1:armhf (2.36.1-1ubuntu2) over (2.36-3ubuntu1) ... Setting up libblkid1:armhf (2.36.1-1ubuntu2) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libudev1_247.1-4ubuntu1_armhf.deb ... Unpacking libudev1:armhf (247.1-4ubuntu1) over (246.6-1ubuntu1) ... Setting up libudev1:armhf (247.1-4ubuntu1) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.167-1ubuntu4_armhf.deb ... Unpacking libdevmapper1.02.1:armhf (2:1.02.167-1ubuntu4) over (2:1.02.167-1ubuntu3) ... Preparing to unpack .../libjson-c5_0.15-2_armhf.deb ... Unpacking libjson-c5:armhf (0.15-2) over (0.15-1) ... Preparing to unpack .../libuuid1_2.36.1-1ubuntu2_armhf.deb ... Unpacking libuuid1:armhf (2.36.1-1ubuntu2) over (2.36-3ubuntu1) ... Setting up libuuid1:armhf (2.36.1-1ubuntu2) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.3.4-1ubuntu1_armhf.deb ... Unpacking libcryptsetup12:armhf (2:2.3.4-1ubuntu1) over (2:2.3.3-1ubuntu6) ... Preparing to unpack .../libnettle8_3.7-2_armhf.deb ... Unpacking libnettle8:armhf (3.7-2) over (3.6-2) ... Setting up libnettle8:armhf (3.7-2) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.7-2_armhf.deb ... Unpacking libhogweed6:armhf (3.7-2) over (3.6-2) ... Setting up libhogweed6:armhf (3.7-2) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.0-5_armhf.deb ... Unpacking libidn2-0:armhf (2.3.0-5) over (2.3.0-1) ... Setting up libidn2-0:armhf (2.3.0-5) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.22-1_armhf.deb ... Unpacking libp11-kit0:armhf (0.23.22-1) over (0.23.21-2build1) ... Setting up libp11-kit0:armhf (0.23.22-1) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.0-5ubuntu1_armhf.deb ... Unpacking libgnutls30:armhf (3.7.0-5ubuntu1) over (3.6.15-4ubuntu2) ... Setting up libgnutls30:armhf (3.7.0-5ubuntu1) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../libip4tc2_1.8.5-3ubuntu4_armhf.deb ... Unpacking libip4tc2:armhf (1.8.5-3ubuntu4) over (1.8.5-3ubuntu1) ... Preparing to unpack .../libseccomp2_2.4.3-1ubuntu6_armhf.deb ... Unpacking libseccomp2:armhf (2.4.3-1ubuntu6) over (2.4.3-1ubuntu4) ... Setting up libseccomp2:armhf (2.4.3-1ubuntu6) ... (Reading database ... 14666 files and directories currently installed.) Preparing to unpack .../mount_2.36.1-1ubuntu2_armhf.deb ... Unpacking mount (2.36.1-1ubuntu2) over (2.36-3ubuntu1) ... Preparing to unpack .../systemd_247.1-4ubuntu1_armhf.deb ... Unpacking systemd (247.1-4ubuntu1) over (246.6-1ubuntu1) ... Preparing to unpack .../libsystemd0_247.1-4ubuntu1_armhf.deb ... Unpacking libsystemd0:armhf (247.1-4ubuntu1) over (246.6-1ubuntu1) ... Setting up libsystemd0:armhf (247.1-4ubuntu1) ... (Reading database ... 14674 files and directories currently installed.) Preparing to unpack .../libzstd1_1.4.8+dfsg-1_armhf.deb ... Unpacking libzstd1:armhf (1.4.8+dfsg-1) over (1.4.5+dfsg-4) ... Setting up libzstd1:armhf (1.4.8+dfsg-1) ... (Reading database ... 14674 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.1.18_armhf.deb ... Unpacking libapt-pkg6.0:armhf (2.1.18) over (2.1.10) ... Setting up libapt-pkg6.0:armhf (2.1.18) ... (Reading database ... 14674 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.20-1ubuntu2_armhf.deb ... Unpacking gpgv (2.2.20-1ubuntu2) over (2.2.20-1ubuntu1) ... Setting up gpgv (2.2.20-1ubuntu2) ... (Reading database ... 14674 files and directories currently installed.) Preparing to unpack .../archives/apt_2.1.18_armhf.deb ... Unpacking apt (2.1.18) over (2.1.10) ... Setting up apt (2.1.18) ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... Setting up libapparmor1:armhf (3.0.0-0ubuntu5) ... Setting up libdevmapper1.02.1:armhf (2:1.02.167-1ubuntu4) ... Setting up libjson-c5:armhf (0.15-2) ... Setting up libssl1.1:armhf (1.1.1f-1ubuntu5) ... Setting up libcryptsetup12:armhf (2:2.3.4-1ubuntu1) ... Setting up libip4tc2:armhf (1.8.5-3ubuntu4) ... Setting up mount (2.36.1-1ubuntu2) ... Setting up systemd-timesyncd (247.1-4ubuntu1) ... Setting up systemd (247.1-4ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Initializing machine ID from random generator. Removing obsolete conffile /etc/pam.d/systemd-user ... Setting up systemd-sysv (247.1-4ubuntu1) ... (Reading database ... 14678 files and directories currently installed.) Preparing to unpack .../archives/init_1.60_armhf.deb ... Unpacking init (1.60) over (1.58) ... Preparing to unpack .../libacl1_2.2.53-9_armhf.deb ... Unpacking libacl1:armhf (2.2.53-9) over (2.2.53-8) ... Setting up libacl1:armhf (2.2.53-9) ... (Reading database ... 14678 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.4.48-6_armhf.deb ... Unpacking libattr1:armhf (1:2.4.48-6) over (1:2.4.48-5) ... Setting up libattr1:armhf (1:2.4.48-6) ... (Reading database ... 14678 files and directories currently installed.) Preparing to unpack .../libmount1_2.36.1-1ubuntu2_armhf.deb ... Unpacking libmount1:armhf (2.36.1-1ubuntu2) over (2.36-3ubuntu1) ... Setting up libmount1:armhf (2.36.1-1ubuntu2) ... (Reading database ... 14678 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.36.1-1ubuntu2_armhf.deb ... Unpacking libsmartcols1:armhf (2.36.1-1ubuntu2) over (2.36-3ubuntu1) ... Setting up libsmartcols1:armhf (2.36.1-1ubuntu2) ... (Reading database ... 14678 files and directories currently installed.) Preparing to unpack .../00-libgomp1_11-20210123-1ubuntu1_armhf.deb ... Unpacking libgomp1:armhf (11-20210123-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../01-libatomic1_11-20210123-1ubuntu1_armhf.deb ... Unpacking libatomic1:armhf (11-20210123-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../02-libasan6_11-20210123-1ubuntu1_armhf.deb ... Unpacking libasan6:armhf (11-20210123-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../03-libubsan1_11-20210123-1ubuntu1_armhf.deb ... Unpacking libubsan1:armhf (11-20210123-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../04-g++-10_10.2.1-6ubuntu1_armhf.deb ... Unpacking g++-10 (10.2.1-6ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../05-gcc-10_10.2.1-6ubuntu1_armhf.deb ... Unpacking gcc-10 (10.2.1-6ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../06-libstdc++-10-dev_10.2.1-6ubuntu1_armhf.deb ... Unpacking libstdc++-10-dev:armhf (10.2.1-6ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../07-libgcc-10-dev_10.2.1-6ubuntu1_armhf.deb ... Unpacking libgcc-10-dev:armhf (10.2.1-6ubuntu1) over (10.2.0-13ubuntu1) ... Selecting previously unselected package libisl23:armhf. Preparing to unpack .../08-libisl23_0.23-1_armhf.deb ... Unpacking libisl23:armhf (0.23-1) ... Preparing to unpack .../09-libmpc3_1.2.0-1_armhf.deb ... Unpacking libmpc3:armhf (1.2.0-1) over (1.2.0~rc1-1) ... Preparing to unpack .../10-libcc1-0_11-20210123-1ubuntu1_armhf.deb ... Unpacking libcc1-0:armhf (11-20210123-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../11-libctf0_2.36-2ubuntu1_armhf.deb ... Unpacking libctf0:armhf (2.36-2ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../12-libctf-nobfd0_2.36-2ubuntu1_armhf.deb ... Unpacking libctf-nobfd0:armhf (2.36-2ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../13-binutils-arm-linux-gnueabihf_2.36-2ubuntu1_armhf.deb ... Unpacking binutils-arm-linux-gnueabihf (2.36-2ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../14-libbinutils_2.36-2ubuntu1_armhf.deb ... Unpacking libbinutils:armhf (2.36-2ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../15-binutils_2.36-2ubuntu1_armhf.deb ... Unpacking binutils (2.36-2ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../16-binutils-common_2.36-2ubuntu1_armhf.deb ... Unpacking binutils-common:armhf (2.36-2ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../17-cpp-10_10.2.1-6ubuntu1_armhf.deb ... Unpacking cpp-10 (10.2.1-6ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../18-gcc-10-base_10.2.1-6ubuntu1_armhf.deb ... Unpacking gcc-10-base:armhf (10.2.1-6ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../19-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) over (0.0.13) ... Preparing to unpack .../20-libcap2_1%3a2.44-1_armhf.deb ... Unpacking libcap2:armhf (1:2.44-1) over (1:2.43-1) ... Preparing to unpack .../21-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) over (8.0-4) ... Preparing to unpack .../22-libreadline8_8.1-1_armhf.deb ... Unpacking libreadline8:armhf (8.1-1) over (8.0-4) ... Preparing to unpack .../23-libsqlite3-0_3.34.0-1_armhf.deb ... Unpacking libsqlite3-0:armhf (3.34.0-1) over (3.33.0-1) ... Preparing to unpack .../24-openssl_1.1.1f-1ubuntu5_armhf.deb ... Unpacking openssl (1.1.1f-1ubuntu5) over (1.1.1f-1ubuntu4) ... Preparing to unpack .../25-tzdata_2021a-1ubuntu1_all.deb ... Unpacking tzdata (2021a-1ubuntu1) over (2020b-1ubuntu1) ... Selecting previously unselected package cpp-11. Preparing to unpack .../26-cpp-11_11-20210123-1ubuntu1_armhf.deb ... Unpacking cpp-11 (11-20210123-1ubuntu1) ... Selecting previously unselected package libgcc-11-dev:armhf. Preparing to unpack .../27-libgcc-11-dev_11-20210123-1ubuntu1_armhf.deb ... Unpacking libgcc-11-dev:armhf (11-20210123-1ubuntu1) ... Selecting previously unselected package gcc-11. Preparing to unpack .../28-gcc-11_11-20210123-1ubuntu1_armhf.deb ... Unpacking gcc-11 (11-20210123-1ubuntu1) ... Selecting previously unselected package libstdc++-11-dev:armhf. Preparing to unpack .../29-libstdc++-11-dev_11-20210123-1ubuntu1_armhf.deb ... Unpacking libstdc++-11-dev:armhf (11-20210123-1ubuntu1) ... Selecting previously unselected package g++-11. Preparing to unpack .../30-g++-11_11-20210123-1ubuntu1_armhf.deb ... Unpacking g++-11 (11-20210123-1ubuntu1) ... Preparing to unpack .../31-g++_4%3a11-20201114-1ubuntu1_armhf.deb ... Unpacking g++ (4:11-20201114-1ubuntu1) over (4:10.2.0-1ubuntu1) ... Preparing to unpack .../32-gcc_4%3a11-20201114-1ubuntu1_armhf.deb ... Unpacking gcc (4:11-20201114-1ubuntu1) over (4:10.2.0-1ubuntu1) ... Preparing to unpack .../33-cpp_4%3a11-20201114-1ubuntu1_armhf.deb ... Unpacking cpp (4:11-20201114-1ubuntu1) over (4:10.2.0-1ubuntu1) ... Preparing to unpack .../34-dpkg-dev_1.20.7.1ubuntu2_all.deb ... Unpacking dpkg-dev (1.20.7.1ubuntu2) over (1.20.5ubuntu2) ... Preparing to unpack .../35-libdpkg-perl_1.20.7.1ubuntu2_all.deb ... Unpacking libdpkg-perl (1.20.7.1ubuntu2) over (1.20.5ubuntu2) ... Preparing to unpack .../36-patch_2.7.6-7_armhf.deb ... Unpacking patch (2.7.6-7) over (2.7.6-6) ... Selecting previously unselected package lto-disabled-list. Preparing to unpack .../37-lto-disabled-list_1_all.deb ... Unpacking lto-disabled-list (1) ... Preparing to unpack .../38-libfakeroot_1.25.3-1.1_armhf.deb ... Unpacking libfakeroot:armhf (1.25.3-1.1) over (1.25.2-1) ... Preparing to unpack .../39-fakeroot_1.25.3-1.1_armhf.deb ... Unpacking fakeroot (1.25.3-1.1) over (1.25.2-1) ... Preparing to unpack .../40-libnpth0_1.6-3_armhf.deb ... Unpacking libnpth0:armhf (1.6-3) over (1.6-2) ... Preparing to unpack .../41-gpg_2.2.20-1ubuntu2_armhf.deb ... Unpacking gpg (2.2.20-1ubuntu2) over (2.2.20-1ubuntu1) ... Preparing to unpack .../42-gpgconf_2.2.20-1ubuntu2_armhf.deb ... Unpacking gpgconf (2.2.20-1ubuntu2) over (2.2.20-1ubuntu1) ... Preparing to unpack .../43-gpg-agent_2.2.20-1ubuntu2_armhf.deb ... Unpacking gpg-agent (2.2.20-1ubuntu2) over (2.2.20-1ubuntu1) ... Preparing to unpack .../44-liblockfile-bin_1.17-1_armhf.deb ... Unpacking liblockfile-bin (1.17-1) over (1.16-1.1) ... Preparing to unpack .../45-liblockfile1_1.17-1_armhf.deb ... Unpacking liblockfile1:armhf (1.17-1) over (1.16-1.1) ... Setting up lto-disabled-list (1) ... Setting up liblockfile-bin (1.17-1) ... Setting up init (1.60) ... Setting up libtirpc-common (1.3.1-1) ... Setting up perl-modules-5.32 (5.32.0-6) ... Setting up libsqlite3-0:armhf (3.34.0-1) ... Setting up binutils-common:armhf (2.36-2ubuntu1) ... Setting up linux-libc-dev:armhf (5.8.0-36.40+21.04.1) ... Setting up libctf-nobfd0:armhf (2.36-2ubuntu1) ... Setting up libnpth0:armhf (1.6-3) ... Setting up libgomp1:armhf (11-20210123-1ubuntu1) ... Setting up libcap2:armhf (1:2.44-1) ... Setting up libfakeroot:armhf (1.25.3-1.1) ... Setting up libasan6:armhf (11-20210123-1ubuntu1) ... Setting up libkrb5support0:armhf (1.18.3-4) ... Setting up tzdata (2021a-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 6 15:32:33 UTC 2021. Universal Time is now: Sat Feb 6 15:32:33 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1.1) ... Setting up gcc-10-base:armhf (10.2.1-6ubuntu1) ... Setting up libncurses6:armhf (6.2+20201114-2) ... Setting up libmpc3:armhf (1.2.0-1) ... Setting up libatomic1:armhf (11-20210123-1ubuntu1) ... Setting up patch (2.7.6-7) ... Setting up libncursesw6:armhf (6.2+20201114-2) ... Setting up libk5crypto3:armhf (1.18.3-4) ... Setting up libubsan1:armhf (11-20210123-1ubuntu1) ... Setting up libgcc-11-dev:armhf (11-20210123-1ubuntu1) ... Setting up sensible-utils (0.0.14) ... Setting up libcrypt-dev:armhf (1:4.4.17-1ubuntu1) ... Setting up libkrb5-3:armhf (1.18.3-4) ... Setting up liblockfile1:armhf (1.17-1) ... Setting up libbinutils:armhf (2.36-2ubuntu1) ... Setting up libisl23:armhf (0.23-1) ... Setting up libc-dev-bin (2.32-0ubuntu6) ... Setting up openssl (1.1.1f-1ubuntu5) ... Setting up readline-common (8.1-1) ... Setting up libcc1-0:armhf (11-20210123-1ubuntu1) ... Setting up cpp-10 (10.2.1-6ubuntu1) ... Setting up libgdbm6:armhf (1.19-2) ... Setting up libctf0:armhf (2.36-2ubuntu1) ... Setting up cpp-11 (11-20210123-1ubuntu1) ... Setting up libgcc-10-dev:armhf (10.2.1-6ubuntu1) ... Setting up libreadline8:armhf (8.1-1) ... Setting up libgssapi-krb5-2:armhf (1.18.3-4) ... Setting up libgdbm-compat4:armhf (1.19-2) ... Setting up libperl5.32:armhf (5.32.0-6) ... Setting up cpp (4:11-20201114-1ubuntu1) ... Setting up gpgconf (2.2.20-1ubuntu2) ... Setting up binutils-arm-linux-gnueabihf (2.36-2ubuntu1) ... Setting up gpg (2.2.20-1ubuntu2) ... Setting up libtirpc3:armhf (1.3.1-1) ... Setting up gpg-agent (2.2.20-1ubuntu2) ... Setting up binutils (2.36-2ubuntu1) ... Setting up perl (5.32.0-6) ... Setting up libtirpc-dev:armhf (1.3.1-1) ... Setting up gcc-10 (10.2.1-6ubuntu1) ... Setting up libdpkg-perl (1.20.7.1ubuntu2) ... Setting up gcc-11 (11-20210123-1ubuntu1) ... Setting up libc6-dev:armhf (2.32-0ubuntu6) ... Setting up libstdc++-10-dev:armhf (10.2.1-6ubuntu1) ... Setting up g++-10 (10.2.1-6ubuntu1) ... Setting up gcc (4:11-20201114-1ubuntu1) ... Setting up dpkg-dev (1.20.7.1ubuntu2) ... Setting up libstdc++-11-dev:armhf (11-20210123-1ubuntu1) ... Setting up g++-11 (11-20210123-1ubuntu1) ... Setting up g++ (4:11-20201114-1ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20672233 armhf hirsute -c chroot:build-PACKAGEBUILD-20672233 --arch=armhf --dist=hirsute --nolog r-bioc-bitseq_1.32.0+dfsg-1build1.dsc Initiating build PACKAGEBUILD-20672233 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-135-generic #139-Ubuntu SMP Mon Jan 18 17:40:29 UTC 2021 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-064.buildd +==============================================================================+ | r-bioc-bitseq 1.32.0+dfsg-1build1 (armhf) Sat, 06 Feb 2021 15:32:38 +0000 | +==============================================================================+ Package: r-bioc-bitseq Version: 1.32.0+dfsg-1build1 Source Version: 1.32.0+dfsg-1build1 Distribution: hirsute Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20672233/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-bitseq_1.32.0+dfsg-1build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-bitseq-TB31Oy/r-bioc-bitseq-1.32.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-bitseq-TB31Oy' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-JG7vct/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-JG7vct/apt_archive ./ InRelease Get:2 copy:/<>/resolver-JG7vct/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-JG7vct/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-JG7vct/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-JG7vct/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (28.5 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: cpp-10 g++-10 gcc-10 libgcc-10-dev libisl22 libperl5.30 libstdc++-10-dev perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-JG7vct/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (53.2 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 15693 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-rsamtools (>= 1.99.3), r-bioc-s4vectors, r-bioc-iranges, r-bioc-rhtslib, libboost-dev, libcurl4-openssl-dev Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-rsamtools (>= 1.99.3), r-bioc-s4vectors, r-bioc-iranges, r-bioc-rhtslib, libboost-dev, libcurl4-openssl-dev dpkg-deb: building package 'sbuild-build-depends-r-bioc-bitseq-dummy' in '/<>/resolver-JG7vct/apt_archive/sbuild-build-depends-r-bioc-bitseq-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-bitseq-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-JG7vct/apt_archive ./ InRelease Get:2 copy:/<>/resolver-JG7vct/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-JG7vct/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-JG7vct/apt_archive ./ Sources [565 B] Get:5 copy:/<>/resolver-JG7vct/apt_archive ./ Packages [644 B] Fetched 2172 B in 0s (50.3 kB/s) Reading package lists... Reading package lists... Install r-bioc-bitseq build dependencies (apt-based resolver) ------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-10 libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libasn1-8-heimdal libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdata-optlist-perl libdatrie1 libdebhelper-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhttp-date-perl libhttp-message-perl libhx509-5-heimdal libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkrb5-26-heimdal liblapack-dev liblapack3 libldap-2.4-2 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwind0-heimdal libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-bitops r-cran-crayon r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-rcurl r-cran-snow ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-11-multilib gfortran-11-doc libcoarrays-dev groff liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libssl-dev icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-delayedarray r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread r-cran-codetools r-cran-knitr r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures r-cran-matrix r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub r-bioc-edger r-bioc-summarizedexperiment r-bioc-graph r-cran-rstudioapi r-cran-shiny r-cran-rmarkdown r-cran-jsonlite r-cran-xml r-cran-rmpi r-cran-rsprng r-cran-rlecuyer Recommended packages: devscripts curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-cran-digest r-bioc-annotate r-bioc-summarizedexperiment r-bioc-shortread r-cran-testthat r-cran-withr r-cran-mockery r-cran-testit r-cran-codetools r-cran-survival libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libasn1-8-heimdal libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdata-optlist-perl libdatrie1 libdebhelper-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhttp-date-perl libhttp-message-perl libhx509-5-heimdal libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkrb5-26-heimdal liblapack-dev liblapack3 libldap-2.4-2 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwind0-heimdal libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-bitops r-cran-crayon r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-rcurl r-cran-snow sbuild-build-depends-r-bioc-bitseq-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 199 newly installed, 0 to remove and 0 not upgraded. Need to get 172 MB of archives. After this operation, 556 MB of additional disk space will be used. Get:1 copy:/<>/resolver-JG7vct/apt_archive ./ sbuild-build-depends-r-bioc-bitseq-dummy 0.invalid.0 [940 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main armhf bsdextrautils armhf 2.36.1-1ubuntu2 [70.7 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libgfortran5 armhf 11-20210123-1ubuntu1 [253 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main armhf groff-base armhf 1.22.4-6 [774 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf libgfortran-11-dev armhf 11-20210123-1ubuntu1 [304 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main armhf gfortran-11 armhf 11-20210123-1ubuntu1 [51.2 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main armhf libpipeline1 armhf 1.5.3-1 [23.3 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main armhf man-db armhf 2.9.3-2 [1082 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main armhf libmagic-mgc armhf 1:5.39-3 [228 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main armhf libmagic1 armhf 1:5.39-3 [71.7 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main armhf file armhf 1:5.39-3 [22.7 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main armhf libelf1 armhf 0.182-3 [39.7 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main armhf libexpat1 armhf 2.2.10-1 [55.1 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main armhf libfribidi0 armhf 1.0.8-2 [21.8 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main armhf libglib2.0-0 armhf 2.66.4-1 [1140 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main armhf libicu67 armhf 67.1-5 [8312 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main armhf libxml2 armhf 2.9.10+dfsg-6.3build1 [531 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main armhf ucf all 3.0043 [56.1 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main armhf gettext-base armhf 0.21-3ubuntu2 [36.2 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main armhf libpsl5 armhf 0.21.0-1.1ubuntu1 [51.1 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main armhf libxau6 armhf 1:1.0.9-0ubuntu1 [6612 B] Get:24 http://ftpmaster.internal/ubuntu hirsute/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu1 [9160 B] Get:25 http://ftpmaster.internal/ubuntu hirsute/main armhf libxcb1 armhf 1.14-2.1 [41.6 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main armhf libx11-data all 2:1.7.0-2 [112 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main armhf libx11-6 armhf 2:1.7.0-2 [514 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main armhf libxext6 armhf 2:1.3.4-0ubuntu1 [24.2 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main armhf libxmuu1 armhf 2:1.1.3-0ubuntu1 [9028 B] Get:30 http://ftpmaster.internal/ubuntu hirsute/main armhf xauth armhf 1:1.1-1 [21.8 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main armhf libsigsegv2 armhf 2.13-1 [13.3 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main armhf m4 armhf 1.4.18-5 [187 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main armhf autoconf all 2.69-14 [293 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main armhf autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main armhf automake all 1:1.16.3-2ubuntu1 [552 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main armhf autopoint all 0.21-3ubuntu2 [422 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main armhf dctrl-tools armhf 2.24-3 [53.8 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main armhf libtool all 2.4.6-15 [161 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main armhf dh-autoreconf all 19 [16.1 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main armhf libdebhelper-perl all 13.3.1ubuntu1 [62.2 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:43 http://ftpmaster.internal/ubuntu hirsute/main armhf libfile-stripnondeterminism-perl all 1.10.0-1 [17.0 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main armhf dh-strip-nondeterminism all 1.10.0-1 [5228 B] Get:45 http://ftpmaster.internal/ubuntu hirsute/main armhf dwz armhf 0.13+20210126-1 [179 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main armhf gettext armhf 0.21-3ubuntu2 [756 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main armhf debhelper all 13.3.1ubuntu1 [882 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main armhf zip armhf 3.0-11build1 [145 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main armhf unzip armhf 6.0-26ubuntu1 [153 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main armhf libpaper1 armhf 1.1.28 [12.1 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main armhf libpaper-utils armhf 1.1.28 [7960 B] Get:54 http://ftpmaster.internal/ubuntu hirsute/main armhf xdg-utils all 1.1.3-2ubuntu2 [61.5 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main armhf libblas3 armhf 3.9.0-3ubuntu1 [97.8 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main armhf libbrotli1 armhf 1.0.9-2build2 [259 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [287 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main armhf fonts-dejavu-core all 2.37-2 [1041 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main armhf fontconfig-config all 2.13.1-4.2ubuntu2 [28.6 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main armhf libfontconfig1 armhf 2.13.1-4.2ubuntu2 [99.1 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main armhf libpixman-1-0 armhf 0.40.0-1 [159 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main armhf libxcb-render0 armhf 1.14-2.1 [14.1 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main armhf libxcb-shm0 armhf 1.14-2.1 [5592 B] Get:64 http://ftpmaster.internal/ubuntu hirsute/main armhf libxrender1 armhf 1:0.9.10-1 [15.6 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main armhf libcairo2 armhf 1.16.0-5 [509 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main armhf libroken18-heimdal armhf 7.7.0+dfsg-2 [34.5 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main armhf libasn1-8-heimdal armhf 7.7.0+dfsg-2 [140 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main armhf libheimbase1-heimdal armhf 7.7.0+dfsg-2 [24.3 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main armhf libhcrypto4-heimdal armhf 7.7.0+dfsg-2 [78.5 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main armhf libwind0-heimdal armhf 7.7.0+dfsg-2 [47.2 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main armhf libhx509-5-heimdal armhf 7.7.0+dfsg-2 [88.8 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main armhf libkrb5-26-heimdal armhf 7.7.0+dfsg-2 [170 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main armhf libheimntlm0-heimdal armhf 7.7.0+dfsg-2 [13.2 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main armhf libgssapi3-heimdal armhf 7.7.0+dfsg-2 [79.9 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2ubuntu1 [13.2 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main armhf libsasl2-2 armhf 2.1.27+dfsg-2ubuntu1 [42.4 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main armhf libldap-2.4-2 armhf 2.4.56+dfsg-1ubuntu2 [133 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main armhf libnghttp2-14 armhf 1.42.0-1 [60.7 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build2 [48.9 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main armhf libssh-4 armhf 0.9.5-1 [147 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main armhf libcurl4 armhf 7.74.0-1ubuntu1 [215 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main armhf libjpeg-turbo8 armhf 2.0.3-0ubuntu2 [90.4 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:84 http://ftpmaster.internal/ubuntu hirsute/main armhf liblapack3 armhf 3.9.0-3ubuntu1 [1637 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main armhf fontconfig armhf 2.13.1-4.2ubuntu2 [181 kB] Get:86 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute/main armhf gfortran armhf 4:11-20201114-1ubuntu1 [1384 B] Get:87 http://ftpmaster.internal/ubuntu hirsute/main armhf libgraphite2-3 armhf 1.3.14-1 [62.7 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main armhf libharfbuzz0b armhf 2.6.7-1ubuntu1 [296 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main armhf libthai-data all 0.1.28-3 [134 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/main armhf libdatrie1 armhf 0.2.12-3 [15.2 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/main armhf libthai0 armhf 0.1.28-3 [14.7 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute/main armhf libpango-1.0-0 armhf 1.48.0-1 [150 kB] Get:93 http://ftpmaster.internal/ubuntu hirsute/main armhf libpangoft2-1.0-0 armhf 1.48.0-1 [30.6 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/main armhf libpangocairo-1.0-0 armhf 1.48.0-1 [21.1 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [806 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main armhf libjbig0 armhf 2.1-3.1build1 [23.9 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main armhf libwebp6 armhf 0.6.1-2 [152 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute/main armhf libtiff5 armhf 4.1.0+git201212-1ubuntu1 [150 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main armhf libxft2 armhf 2.3.3-0ubuntu1 [32.5 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main armhf x11-common all 1:7.7+19ubuntu15 [22.2 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main armhf libxss1 armhf 1:1.2.3-1 [7512 B] Get:102 http://ftpmaster.internal/ubuntu hirsute/main armhf libtk8.6 armhf 8.6.11-2 [632 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute/main armhf libice6 armhf 2:1.0.10-1 [33.5 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/main armhf libsm6 armhf 2:1.2.3-1 [14.1 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/main armhf libxt6 armhf 1:1.2.0-1 [133 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-base-core armhf 4.0.3-1 [24.7 MB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main armhf libblas-dev armhf 3.9.0-3ubuntu1 [104 kB] Get:108 http://ftpmaster.internal/ubuntu hirsute/main armhf liblapack-dev armhf 3.9.0-3ubuntu1 [1705 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/main armhf libncurses-dev armhf 6.2+20201114-2 [308 kB] Get:110 http://ftpmaster.internal/ubuntu hirsute/main armhf libncurses5-dev armhf 6.2+20201114-2 [984 B] Get:111 http://ftpmaster.internal/ubuntu hirsute/main armhf libreadline-dev armhf 8.1-1 [135 kB] Get:112 http://ftpmaster.internal/ubuntu hirsute/main armhf libjpeg-turbo8-dev armhf 2.0.3-0ubuntu2 [203 kB] Get:113 http://ftpmaster.internal/ubuntu hirsute/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:114 http://ftpmaster.internal/ubuntu hirsute/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:115 http://ftpmaster.internal/ubuntu hirsute/main armhf libpcre2-16-0 armhf 10.35-2ubuntu1 [155 kB] Get:116 http://ftpmaster.internal/ubuntu hirsute/main armhf libpcre2-32-0 armhf 10.35-2ubuntu1 [146 kB] Get:117 http://ftpmaster.internal/ubuntu hirsute/main armhf libpcre2-posix2 armhf 10.35-2ubuntu1 [5380 B] Get:118 http://ftpmaster.internal/ubuntu hirsute/main armhf libpcre2-dev armhf 10.35-2ubuntu1 [594 kB] Get:119 http://ftpmaster.internal/ubuntu hirsute/main armhf libpcre16-3 armhf 2:8.39-13 [128 kB] Get:120 http://ftpmaster.internal/ubuntu hirsute/main armhf libpcre32-3 armhf 2:8.39-13 [121 kB] Get:121 http://ftpmaster.internal/ubuntu hirsute/main armhf libpcrecpp0v5 armhf 2:8.39-13 [13.2 kB] Get:122 http://ftpmaster.internal/ubuntu hirsute/main armhf libpcre3-dev armhf 2:8.39-13 [477 kB] Get:123 http://ftpmaster.internal/ubuntu hirsute/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu4 [149 kB] Get:124 http://ftpmaster.internal/ubuntu hirsute/main armhf libpng-dev armhf 1.6.37-3 [163 kB] Get:125 http://ftpmaster.internal/ubuntu hirsute/main armhf libbz2-dev armhf 1.0.8-4ubuntu2 [29.3 kB] Get:126 http://ftpmaster.internal/ubuntu hirsute/main armhf liblzma-dev armhf 5.2.4-1ubuntu1 [139 kB] Get:127 http://ftpmaster.internal/ubuntu hirsute/main armhf icu-devtools armhf 67.1-5 [169 kB] Get:128 http://ftpmaster.internal/ubuntu hirsute/main armhf libicu-dev armhf 67.1-5 [9331 kB] Get:129 http://ftpmaster.internal/ubuntu hirsute/main armhf pkg-config armhf 0.29.2-1ubuntu1 [43.4 kB] Get:130 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-base-dev all 4.0.3-1 [4524 B] Get:131 http://ftpmaster.internal/ubuntu hirsute/main armhf libfile-which-perl all 1.23-1 [13.8 kB] Get:132 http://ftpmaster.internal/ubuntu hirsute/universe armhf libswitch-perl all 2.17-2.1 [18.3 kB] Get:133 http://ftpmaster.internal/ubuntu hirsute/main armhf libencode-locale-perl all 1.05-1.1 [11.8 kB] Get:134 http://ftpmaster.internal/ubuntu hirsute/main armhf libtimedate-perl all 2.3300-1 [33.9 kB] Get:135 http://ftpmaster.internal/ubuntu hirsute/main armhf libhttp-date-perl all 6.05-1 [9920 B] Get:136 http://ftpmaster.internal/ubuntu hirsute/main armhf libio-html-perl all 1.001-1.1 [14.4 kB] Get:137 http://ftpmaster.internal/ubuntu hirsute/main armhf liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:138 http://ftpmaster.internal/ubuntu hirsute/main armhf liburi-perl all 5.05-1 [77.5 kB] Get:139 http://ftpmaster.internal/ubuntu hirsute/main armhf libhttp-message-perl all 6.27-1 [75.7 kB] Get:140 http://ftpmaster.internal/ubuntu hirsute/main armhf libparams-util-perl armhf 1.102-1build1 [20.7 kB] Get:141 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-install-perl all 0.928-1.1 [9972 B] Get:142 http://ftpmaster.internal/ubuntu hirsute/main armhf libdata-optlist-perl all 0.110-1.1 [10.2 kB] Get:143 http://ftpmaster.internal/ubuntu hirsute/main armhf libb-hooks-op-check-perl armhf 0.22-1build3 [9860 B] Get:144 http://ftpmaster.internal/ubuntu hirsute/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.1 kB] Get:145 http://ftpmaster.internal/ubuntu hirsute/main armhf libdevel-callchecker-perl armhf 0.008-1ubuntu2 [14.2 kB] Get:146 http://ftpmaster.internal/ubuntu hirsute/main armhf libparams-classify-perl armhf 0.015-1build3 [19.8 kB] Get:147 http://ftpmaster.internal/ubuntu hirsute/main armhf libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:148 http://ftpmaster.internal/ubuntu hirsute/main armhf libtry-tiny-perl all 0.30-1 [20.5 kB] Get:149 http://ftpmaster.internal/ubuntu hirsute/main armhf libmodule-implementation-perl all 0.09-1.1 [11.6 kB] Get:150 http://ftpmaster.internal/ubuntu hirsute/main armhf libpackage-stash-perl all 0.39-1 [19.1 kB] Get:151 http://ftpmaster.internal/ubuntu hirsute/universe armhf libclass-load-perl all 0.25-1 [13.5 kB] Get:152 http://ftpmaster.internal/ubuntu hirsute/universe armhf libclass-load-xs-perl armhf 0.10-1build6 [13.0 kB] Get:153 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:154 http://ftpmaster.internal/ubuntu hirsute/universe armhf libdevel-globaldestruction-perl all 0.14-1.1 [6916 B] Get:155 http://ftpmaster.internal/ubuntu hirsute/universe armhf libalgorithm-c3-perl all 0.11-1 [11.0 kB] Get:156 http://ftpmaster.internal/ubuntu hirsute/universe armhf libclass-c3-perl all 0.35-1 [19.0 kB] Get:157 http://ftpmaster.internal/ubuntu hirsute/universe armhf libmro-compat-perl all 0.13-1 [11.2 kB] Get:158 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-identify-perl armhf 0.14-1build3 [10.1 kB] Get:159 http://ftpmaster.internal/ubuntu hirsute/universe armhf libdevel-overloadinfo-perl all 0.005-1 [6780 B] Get:160 http://ftpmaster.internal/ubuntu hirsute/main armhf libdevel-stacktrace-perl all 2.0400-1 [22.7 kB] Get:161 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-exporter-perl all 0.987-1 [44.9 kB] Get:162 http://ftpmaster.internal/ubuntu hirsute/universe armhf libeval-closure-perl all 0.14-1 [10.3 kB] Get:163 http://ftpmaster.internal/ubuntu hirsute/universe armhf libdist-checkconflicts-perl all 0.11-1.1 [9632 B] Get:164 http://ftpmaster.internal/ubuntu hirsute/universe armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [6836 B] Get:165 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-name-perl armhf 0.26-1build1 [10.8 kB] Get:166 http://ftpmaster.internal/ubuntu hirsute/universe armhf libpackage-deprecationmanager-perl all 0.17-1.1 [15.5 kB] Get:167 http://ftpmaster.internal/ubuntu hirsute/main armhf libpackage-stash-xs-perl armhf 0.29-1build3 [16.7 kB] Get:168 http://ftpmaster.internal/ubuntu hirsute/universe armhf libmoose-perl armhf 2.2014-2 [743 kB] Get:169 http://ftpmaster.internal/ubuntu hirsute/main armhf libvariable-magic-perl armhf 0.62-1build3 [31.4 kB] Get:170 http://ftpmaster.internal/ubuntu hirsute/main armhf libb-hooks-endofscope-perl all 0.24-1.1 [17.0 kB] Get:171 http://ftpmaster.internal/ubuntu hirsute/main armhf libnamespace-clean-perl all 0.27-1 [13.6 kB] Get:172 http://ftpmaster.internal/ubuntu hirsute/main armhf libcurl3-gnutls armhf 7.74.0-1ubuntu1 [212 kB] Get:173 http://ftpmaster.internal/ubuntu hirsute/universe armhf libwww-curl-perl armhf 4.17-7build1 [49.7 kB] Get:174 http://ftpmaster.internal/ubuntu hirsute/universe armhf libwww-curl-simple-perl all 0.100191-2 [10.9 kB] Get:175 http://ftpmaster.internal/ubuntu hirsute/universe armhf dh-r all 20201129ubuntu1 [36.7 kB] Get:176 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost1.74-dev armhf 1.74.0-3ubuntu2 [9508 kB] Get:177 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost-dev armhf 1.74.0.3ubuntu2 [3376 B] Get:178 http://ftpmaster.internal/ubuntu hirsute/main armhf libcurl4-openssl-dev armhf 7.74.0-1ubuntu1 [308 kB] Get:179 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-bioc-biocgenerics all 0.34.0-1build1 [639 kB] Get:180 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-cran-formatr all 1.7-2build1 [147 kB] Get:181 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-cran-lambda.r all 1.2.4-2build1 [119 kB] Get:182 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-cran-futile.options all 1.0.1-3build1 [20.2 kB] Get:183 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] Get:184 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-cran-snow all 1:0.4.3-2 [109 kB] Get:185 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-cran-bh all 1.74.0-1 [5240 B] Get:186 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-bioc-biocparallel armhf 1.22.0-2 [1136 kB] Get:187 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-bioc-s4vectors armhf 0.26.1-1build1 [1999 kB] Get:188 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-bioc-iranges armhf 2.22.2-1build1 [2267 kB] Get:189 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-bioc-zlibbioc all 1.34.0+dfsg-1build1 [8960 B] Get:190 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-bioc-xvector armhf 0.28.0-1 [616 kB] Get:191 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-cran-crayon all 1.3.4-5 [498 kB] Get:192 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-bioc-biostrings armhf 2.56.0-1 [14.2 MB] Get:193 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-cran-bitops armhf 1.0-6-5 [22.8 kB] Get:194 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-cran-rcurl armhf 1.98-1.2-1build1 [785 kB] Get:195 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB] Get:196 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-bioc-genomeinfodb all 1.24.2-1 [3902 kB] Get:197 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-bioc-genomicranges armhf 1.40.0+dfsg-1build1 [1873 kB] Get:198 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-bioc-rhtslib armhf 1.20.0+dfsg-1build1 [971 kB] Get:199 http://ftpmaster.internal/ubuntu hirsute/universe armhf r-bioc-rsamtools armhf 2.4.0-1build1 [3729 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 172 MB in 9s (19.9 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 15693 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-1ubuntu2_armhf.deb ... Unpacking bsdextrautils (2.36.1-1ubuntu2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../001-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_armhf.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../003-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_armhf.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.39-3_armhf.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../006-libmagic1_1%3a5.39-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.39-3_armhf.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../008-libbsd0_0.10.0-1_armhf.deb ... Unpacking libbsd0:armhf (0.10.0-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../009-libelf1_0.182-3_armhf.deb ... Unpacking libelf1:armhf (0.182-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../010-libexpat1_2.2.10-1_armhf.deb ... Unpacking libexpat1:armhf (2.2.10-1) ... Selecting previously unselected package libfribidi0:armhf. Preparing to unpack .../011-libfribidi0_1.0.8-2_armhf.deb ... Unpacking libfribidi0:armhf (1.0.8-2) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../012-libglib2.0-0_2.66.4-1_armhf.deb ... Unpacking libglib2.0-0:armhf (2.66.4-1) ... Selecting previously unselected package libicu67:armhf. Preparing to unpack .../013-libicu67_67.1-5_armhf.deb ... Unpacking libicu67:armhf (67.1-5) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../014-libxml2_2.9.10+dfsg-6.3build1_armhf.deb ... Unpacking libxml2:armhf (2.9.10+dfsg-6.3build1) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package gettext-base. Preparing to unpack .../016-gettext-base_0.21-3ubuntu2_armhf.deb ... Unpacking gettext-base (0.21-3ubuntu2) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../017-libpsl5_0.21.0-1.1ubuntu1_armhf.deb ... Unpacking libpsl5:armhf (0.21.0-1.1ubuntu1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../018-libxau6_1%3a1.0.9-0ubuntu1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-0ubuntu1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../019-libxdmcp6_1%3a1.1.3-0ubuntu1_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.3-0ubuntu1) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../020-libxcb1_1.14-2.1_armhf.deb ... Unpacking libxcb1:armhf (1.14-2.1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../021-libx11-data_2%3a1.7.0-2_all.deb ... Unpacking libx11-data (2:1.7.0-2) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../022-libx11-6_2%3a1.7.0-2_armhf.deb ... Unpacking libx11-6:armhf (2:1.7.0-2) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../023-libxext6_2%3a1.3.4-0ubuntu1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-0ubuntu1) ... Selecting previously unselected package libxmuu1:armhf. Preparing to unpack .../024-libxmuu1_2%3a1.1.3-0ubuntu1_armhf.deb ... Unpacking libxmuu1:armhf (2:1.1.3-0ubuntu1) ... Selecting previously unselected package xauth. Preparing to unpack .../025-xauth_1%3a1.1-1_armhf.deb ... Unpacking xauth (1:1.1-1) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../026-libsigsegv2_2.13-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../027-m4_1.4.18-5_armhf.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../028-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../029-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../030-automake_1%3a1.16.3-2ubuntu1_all.deb ... Unpacking automake (1:1.16.3-2ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../031-autopoint_0.21-3ubuntu2_all.deb ... Unpacking autopoint (0.21-3ubuntu2) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../032-dctrl-tools_2.24-3_armhf.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libtool. Preparing to unpack .../033-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../034-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../035-libdebhelper-perl_13.3.1ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.3.1ubuntu1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../036-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../037-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../038-libfile-stripnondeterminism-perl_1.10.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.10.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../039-dh-strip-nondeterminism_1.10.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.10.0-1) ... Selecting previously unselected package dwz. Preparing to unpack .../040-dwz_0.13+20210126-1_armhf.deb ... Unpacking dwz (0.13+20210126-1) ... Selecting previously unselected package gettext. Preparing to unpack .../041-gettext_0.21-3ubuntu2_armhf.deb ... Unpacking gettext (0.21-3ubuntu2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../042-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../043-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../044-debhelper_13.3.1ubuntu1_all.deb ... Unpacking debhelper (13.3.1ubuntu1) ... Selecting previously unselected package zip. Preparing to unpack .../045-zip_3.0-11build1_armhf.deb ... Unpacking zip (3.0-11build1) ... Selecting previously unselected package unzip. Preparing to unpack .../046-unzip_6.0-26ubuntu1_armhf.deb ... Unpacking unzip (6.0-26ubuntu1) ... Selecting previously unselected package libpaper1:armhf. Preparing to unpack .../047-libpaper1_1.1.28_armhf.deb ... Unpacking libpaper1:armhf (1.1.28) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../048-libpaper-utils_1.1.28_armhf.deb ... Unpacking libpaper-utils (1.1.28) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../049-xdg-utils_1.1.3-2ubuntu2_all.deb ... Unpacking xdg-utils (1.1.3-2ubuntu2) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../050-libblas3_3.9.0-3ubuntu1_armhf.deb ... Unpacking libblas3:armhf (3.9.0-3ubuntu1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../051-libbrotli1_1.0.9-2build2_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2build2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../052-libfreetype6_2.10.4+dfsg-1_armhf.deb ... Unpacking libfreetype6:armhf (2.10.4+dfsg-1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../053-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../054-fontconfig-config_2.13.1-4.2ubuntu2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2ubuntu2) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../055-libfontconfig1_2.13.1-4.2ubuntu2_armhf.deb ... Unpacking libfontconfig1:armhf (2.13.1-4.2ubuntu2) ... Selecting previously unselected package libpixman-1-0:armhf. Preparing to unpack .../056-libpixman-1-0_0.40.0-1_armhf.deb ... Unpacking libpixman-1-0:armhf (0.40.0-1) ... Selecting previously unselected package libxcb-render0:armhf. Preparing to unpack .../057-libxcb-render0_1.14-2.1_armhf.deb ... Unpacking libxcb-render0:armhf (1.14-2.1) ... Selecting previously unselected package libxcb-shm0:armhf. Preparing to unpack .../058-libxcb-shm0_1.14-2.1_armhf.deb ... Unpacking libxcb-shm0:armhf (1.14-2.1) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../059-libxrender1_1%3a0.9.10-1_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1) ... Selecting previously unselected package libcairo2:armhf. Preparing to unpack .../060-libcairo2_1.16.0-5_armhf.deb ... Unpacking libcairo2:armhf (1.16.0-5) ... Selecting previously unselected package libroken18-heimdal:armhf. Preparing to unpack .../061-libroken18-heimdal_7.7.0+dfsg-2_armhf.deb ... Unpacking libroken18-heimdal:armhf (7.7.0+dfsg-2) ... Selecting previously unselected package libasn1-8-heimdal:armhf. Preparing to unpack .../062-libasn1-8-heimdal_7.7.0+dfsg-2_armhf.deb ... Unpacking libasn1-8-heimdal:armhf (7.7.0+dfsg-2) ... Selecting previously unselected package libheimbase1-heimdal:armhf. Preparing to unpack .../063-libheimbase1-heimdal_7.7.0+dfsg-2_armhf.deb ... Unpacking libheimbase1-heimdal:armhf (7.7.0+dfsg-2) ... Selecting previously unselected package libhcrypto4-heimdal:armhf. Preparing to unpack .../064-libhcrypto4-heimdal_7.7.0+dfsg-2_armhf.deb ... Unpacking libhcrypto4-heimdal:armhf (7.7.0+dfsg-2) ... Selecting previously unselected package libwind0-heimdal:armhf. Preparing to unpack .../065-libwind0-heimdal_7.7.0+dfsg-2_armhf.deb ... Unpacking libwind0-heimdal:armhf (7.7.0+dfsg-2) ... Selecting previously unselected package libhx509-5-heimdal:armhf. Preparing to unpack .../066-libhx509-5-heimdal_7.7.0+dfsg-2_armhf.deb ... Unpacking libhx509-5-heimdal:armhf (7.7.0+dfsg-2) ... Selecting previously unselected package libkrb5-26-heimdal:armhf. Preparing to unpack .../067-libkrb5-26-heimdal_7.7.0+dfsg-2_armhf.deb ... Unpacking libkrb5-26-heimdal:armhf (7.7.0+dfsg-2) ... Selecting previously unselected package libheimntlm0-heimdal:armhf. Preparing to unpack .../068-libheimntlm0-heimdal_7.7.0+dfsg-2_armhf.deb ... Unpacking libheimntlm0-heimdal:armhf (7.7.0+dfsg-2) ... Selecting previously unselected package libgssapi3-heimdal:armhf. Preparing to unpack .../069-libgssapi3-heimdal_7.7.0+dfsg-2_armhf.deb ... Unpacking libgssapi3-heimdal:armhf (7.7.0+dfsg-2) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../070-libsasl2-modules-db_2.1.27+dfsg-2ubuntu1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.27+dfsg-2ubuntu1) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../071-libsasl2-2_2.1.27+dfsg-2ubuntu1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.27+dfsg-2ubuntu1) ... Selecting previously unselected package libldap-2.4-2:armhf. Preparing to unpack .../072-libldap-2.4-2_2.4.56+dfsg-1ubuntu2_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.56+dfsg-1ubuntu2) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../073-libnghttp2-14_1.42.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.42.0-1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../074-librtmp1_2.4+20151223.gitfa8646d.1-2build2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build2) ... Selecting previously unselected package libssh-4:armhf. Preparing to unpack .../075-libssh-4_0.9.5-1_armhf.deb ... Unpacking libssh-4:armhf (0.9.5-1) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../076-libcurl4_7.74.0-1ubuntu1_armhf.deb ... Unpacking libcurl4:armhf (7.74.0-1ubuntu1) ... Selecting previously unselected package libjpeg-turbo8:armhf. Preparing to unpack .../077-libjpeg-turbo8_2.0.3-0ubuntu2_armhf.deb ... Unpacking libjpeg-turbo8:armhf (2.0.3-0ubuntu2) ... Selecting previously unselected package libjpeg8:armhf. Preparing to unpack .../078-libjpeg8_8c-2ubuntu8_armhf.deb ... Unpacking libjpeg8:armhf (8c-2ubuntu8) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../079-libgfortran5_11-20210123-1ubuntu1_armhf.deb ... Unpacking libgfortran5:armhf (11-20210123-1ubuntu1) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../080-liblapack3_3.9.0-3ubuntu1_armhf.deb ... Unpacking liblapack3:armhf (3.9.0-3ubuntu1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../081-fontconfig_2.13.1-4.2ubuntu2_armhf.deb ... Unpacking fontconfig (2.13.1-4.2ubuntu2) ... Selecting previously unselected package libgraphite2-3:armhf. Preparing to unpack .../082-libgraphite2-3_1.3.14-1_armhf.deb ... Unpacking libgraphite2-3:armhf (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:armhf. Preparing to unpack .../083-libharfbuzz0b_2.6.7-1ubuntu1_armhf.deb ... Unpacking libharfbuzz0b:armhf (2.6.7-1ubuntu1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../084-libthai-data_0.1.28-3_all.deb ... Unpacking libthai-data (0.1.28-3) ... Selecting previously unselected package libdatrie1:armhf. Preparing to unpack .../085-libdatrie1_0.2.12-3_armhf.deb ... Unpacking libdatrie1:armhf (0.2.12-3) ... Selecting previously unselected package libthai0:armhf. Preparing to unpack .../086-libthai0_0.1.28-3_armhf.deb ... Unpacking libthai0:armhf (0.1.28-3) ... Selecting previously unselected package libpango-1.0-0:armhf. Preparing to unpack .../087-libpango-1.0-0_1.48.0-1_armhf.deb ... Unpacking libpango-1.0-0:armhf (1.48.0-1) ... Selecting previously unselected package libpangoft2-1.0-0:armhf. Preparing to unpack .../088-libpangoft2-1.0-0_1.48.0-1_armhf.deb ... Unpacking libpangoft2-1.0-0:armhf (1.48.0-1) ... Selecting previously unselected package libpangocairo-1.0-0:armhf. Preparing to unpack .../089-libpangocairo-1.0-0_1.48.0-1_armhf.deb ... Unpacking libpangocairo-1.0-0:armhf (1.48.0-1) ... Selecting previously unselected package libtcl8.6:armhf. Preparing to unpack .../090-libtcl8.6_8.6.11+dfsg-1_armhf.deb ... Unpacking libtcl8.6:armhf (8.6.11+dfsg-1) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../091-libjbig0_2.1-3.1build1_armhf.deb ... Unpacking libjbig0:armhf (2.1-3.1build1) ... Selecting previously unselected package libwebp6:armhf. Preparing to unpack .../092-libwebp6_0.6.1-2_armhf.deb ... Unpacking libwebp6:armhf (0.6.1-2) ... Selecting previously unselected package libtiff5:armhf. Preparing to unpack .../093-libtiff5_4.1.0+git201212-1ubuntu1_armhf.deb ... Unpacking libtiff5:armhf (4.1.0+git201212-1ubuntu1) ... Selecting previously unselected package libxft2:armhf. Preparing to unpack .../094-libxft2_2.3.3-0ubuntu1_armhf.deb ... Unpacking libxft2:armhf (2.3.3-0ubuntu1) ... Selecting previously unselected package x11-common. Preparing to unpack .../095-x11-common_1%3a7.7+19ubuntu15_all.deb ... dpkg-query: no packages found matching nux-tools Unpacking x11-common (1:7.7+19ubuntu15) ... Selecting previously unselected package libxss1:armhf. Preparing to unpack .../096-libxss1_1%3a1.2.3-1_armhf.deb ... Unpacking libxss1:armhf (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:armhf. Preparing to unpack .../097-libtk8.6_8.6.11-2_armhf.deb ... Unpacking libtk8.6:armhf (8.6.11-2) ... Selecting previously unselected package libice6:armhf. Preparing to unpack .../098-libice6_2%3a1.0.10-1_armhf.deb ... Unpacking libice6:armhf (2:1.0.10-1) ... Selecting previously unselected package libsm6:armhf. Preparing to unpack .../099-libsm6_2%3a1.2.3-1_armhf.deb ... Unpacking libsm6:armhf (2:1.2.3-1) ... Selecting previously unselected package libxt6:armhf. Preparing to unpack .../100-libxt6_1%3a1.2.0-1_armhf.deb ... Unpacking libxt6:armhf (1:1.2.0-1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../101-r-base-core_4.0.3-1_armhf.deb ... Unpacking r-base-core (4.0.3-1) ... Selecting previously unselected package libgfortran-11-dev:armhf. Preparing to unpack .../102-libgfortran-11-dev_11-20210123-1ubuntu1_armhf.deb ... Unpacking libgfortran-11-dev:armhf (11-20210123-1ubuntu1) ... Selecting previously unselected package gfortran-11. Preparing to unpack .../103-gfortran-11_11-20210123-1ubuntu1_armhf.deb ... Unpacking gfortran-11 (11-20210123-1ubuntu1) ... Selecting previously unselected package gfortran. Preparing to unpack .../104-gfortran_4%3a11-20201114-1ubuntu1_armhf.deb ... Unpacking gfortran (4:11-20201114-1ubuntu1) ... Selecting previously unselected package libblas-dev:armhf. Preparing to unpack .../105-libblas-dev_3.9.0-3ubuntu1_armhf.deb ... Unpacking libblas-dev:armhf (3.9.0-3ubuntu1) ... Selecting previously unselected package liblapack-dev:armhf. Preparing to unpack .../106-liblapack-dev_3.9.0-3ubuntu1_armhf.deb ... Unpacking liblapack-dev:armhf (3.9.0-3ubuntu1) ... Selecting previously unselected package libncurses-dev:armhf. Preparing to unpack .../107-libncurses-dev_6.2+20201114-2_armhf.deb ... Unpacking libncurses-dev:armhf (6.2+20201114-2) ... Selecting previously unselected package libncurses5-dev:armhf. Preparing to unpack .../108-libncurses5-dev_6.2+20201114-2_armhf.deb ... Unpacking libncurses5-dev:armhf (6.2+20201114-2) ... Selecting previously unselected package libreadline-dev:armhf. Preparing to unpack .../109-libreadline-dev_8.1-1_armhf.deb ... Unpacking libreadline-dev:armhf (8.1-1) ... Selecting previously unselected package libjpeg-turbo8-dev:armhf. Preparing to unpack .../110-libjpeg-turbo8-dev_2.0.3-0ubuntu2_armhf.deb ... Unpacking libjpeg-turbo8-dev:armhf (2.0.3-0ubuntu2) ... Selecting previously unselected package libjpeg8-dev:armhf. Preparing to unpack .../111-libjpeg8-dev_8c-2ubuntu8_armhf.deb ... Unpacking libjpeg8-dev:armhf (8c-2ubuntu8) ... Selecting previously unselected package libjpeg-dev:armhf. Preparing to unpack .../112-libjpeg-dev_8c-2ubuntu8_armhf.deb ... Unpacking libjpeg-dev:armhf (8c-2ubuntu8) ... Selecting previously unselected package libpcre2-16-0:armhf. Preparing to unpack .../113-libpcre2-16-0_10.35-2ubuntu1_armhf.deb ... Unpacking libpcre2-16-0:armhf (10.35-2ubuntu1) ... Selecting previously unselected package libpcre2-32-0:armhf. Preparing to unpack .../114-libpcre2-32-0_10.35-2ubuntu1_armhf.deb ... Unpacking libpcre2-32-0:armhf (10.35-2ubuntu1) ... Selecting previously unselected package libpcre2-posix2:armhf. Preparing to unpack .../115-libpcre2-posix2_10.35-2ubuntu1_armhf.deb ... Unpacking libpcre2-posix2:armhf (10.35-2ubuntu1) ... Selecting previously unselected package libpcre2-dev:armhf. Preparing to unpack .../116-libpcre2-dev_10.35-2ubuntu1_armhf.deb ... Unpacking libpcre2-dev:armhf (10.35-2ubuntu1) ... Selecting previously unselected package libpcre16-3:armhf. Preparing to unpack .../117-libpcre16-3_2%3a8.39-13_armhf.deb ... Unpacking libpcre16-3:armhf (2:8.39-13) ... Selecting previously unselected package libpcre32-3:armhf. Preparing to unpack .../118-libpcre32-3_2%3a8.39-13_armhf.deb ... Unpacking libpcre32-3:armhf (2:8.39-13) ... Selecting previously unselected package libpcrecpp0v5:armhf. Preparing to unpack .../119-libpcrecpp0v5_2%3a8.39-13_armhf.deb ... Unpacking libpcrecpp0v5:armhf (2:8.39-13) ... Selecting previously unselected package libpcre3-dev:armhf. Preparing to unpack .../120-libpcre3-dev_2%3a8.39-13_armhf.deb ... Unpacking libpcre3-dev:armhf (2:8.39-13) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../121-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu4_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu4) ... Selecting previously unselected package libpng-dev:armhf. Preparing to unpack .../122-libpng-dev_1.6.37-3_armhf.deb ... Unpacking libpng-dev:armhf (1.6.37-3) ... Selecting previously unselected package libbz2-dev:armhf. Preparing to unpack .../123-libbz2-dev_1.0.8-4ubuntu2_armhf.deb ... Unpacking libbz2-dev:armhf (1.0.8-4ubuntu2) ... Selecting previously unselected package liblzma-dev:armhf. Preparing to unpack .../124-liblzma-dev_5.2.4-1ubuntu1_armhf.deb ... Unpacking liblzma-dev:armhf (5.2.4-1ubuntu1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../125-icu-devtools_67.1-5_armhf.deb ... Unpacking icu-devtools (67.1-5) ... Selecting previously unselected package libicu-dev:armhf. Preparing to unpack .../126-libicu-dev_67.1-5_armhf.deb ... Unpacking libicu-dev:armhf (67.1-5) ... Selecting previously unselected package pkg-config. Preparing to unpack .../127-pkg-config_0.29.2-1ubuntu1_armhf.deb ... Unpacking pkg-config (0.29.2-1ubuntu1) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../128-r-base-dev_4.0.3-1_all.deb ... Unpacking r-base-dev (4.0.3-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../129-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libswitch-perl. Preparing to unpack .../130-libswitch-perl_2.17-2.1_all.deb ... Unpacking libswitch-perl (2.17-2.1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../131-libencode-locale-perl_1.05-1.1_all.deb ... Unpacking libencode-locale-perl (1.05-1.1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../132-libtimedate-perl_2.3300-1_all.deb ... Unpacking libtimedate-perl (2.3300-1) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../133-libhttp-date-perl_6.05-1_all.deb ... Unpacking libhttp-date-perl (6.05-1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../134-libio-html-perl_1.001-1.1_all.deb ... Unpacking libio-html-perl (1.001-1.1) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../135-liblwp-mediatypes-perl_6.04-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../136-liburi-perl_5.05-1_all.deb ... Unpacking liburi-perl (5.05-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../137-libhttp-message-perl_6.27-1_all.deb ... Unpacking libhttp-message-perl (6.27-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../138-libparams-util-perl_1.102-1build1_armhf.deb ... Unpacking libparams-util-perl (1.102-1build1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../139-libsub-install-perl_0.928-1.1_all.deb ... Unpacking libsub-install-perl (0.928-1.1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../140-libdata-optlist-perl_0.110-1.1_all.deb ... Unpacking libdata-optlist-perl (0.110-1.1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../141-libb-hooks-op-check-perl_0.22-1build3_armhf.deb ... Unpacking libb-hooks-op-check-perl (0.22-1build3) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../142-libdynaloader-functions-perl_0.003-1.1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1.1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../143-libdevel-callchecker-perl_0.008-1ubuntu2_armhf.deb ... Unpacking libdevel-callchecker-perl (0.008-1ubuntu2) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../144-libparams-classify-perl_0.015-1build3_armhf.deb ... Unpacking libparams-classify-perl (0.015-1build3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../145-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../146-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../147-libmodule-implementation-perl_0.09-1.1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1.1) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../148-libpackage-stash-perl_0.39-1_all.deb ... Unpacking libpackage-stash-perl (0.39-1) ... Selecting previously unselected package libclass-load-perl. Preparing to unpack .../149-libclass-load-perl_0.25-1_all.deb ... Unpacking libclass-load-perl (0.25-1) ... Selecting previously unselected package libclass-load-xs-perl. Preparing to unpack .../150-libclass-load-xs-perl_0.10-1build6_armhf.deb ... Unpacking libclass-load-xs-perl (0.10-1build6) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../151-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../152-libdevel-globaldestruction-perl_0.14-1.1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-1.1) ... Selecting previously unselected package libalgorithm-c3-perl. Preparing to unpack .../153-libalgorithm-c3-perl_0.11-1_all.deb ... Unpacking libalgorithm-c3-perl (0.11-1) ... Selecting previously unselected package libclass-c3-perl. Preparing to unpack .../154-libclass-c3-perl_0.35-1_all.deb ... Unpacking libclass-c3-perl (0.35-1) ... Selecting previously unselected package libmro-compat-perl. Preparing to unpack .../155-libmro-compat-perl_0.13-1_all.deb ... Unpacking libmro-compat-perl (0.13-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../156-libsub-identify-perl_0.14-1build3_armhf.deb ... Unpacking libsub-identify-perl (0.14-1build3) ... Selecting previously unselected package libdevel-overloadinfo-perl. Preparing to unpack .../157-libdevel-overloadinfo-perl_0.005-1_all.deb ... Unpacking libdevel-overloadinfo-perl (0.005-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../158-libdevel-stacktrace-perl_2.0400-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../159-libsub-exporter-perl_0.987-1_all.deb ... Unpacking libsub-exporter-perl (0.987-1) ... Selecting previously unselected package libeval-closure-perl. Preparing to unpack .../160-libeval-closure-perl_0.14-1_all.deb ... Unpacking libeval-closure-perl (0.14-1) ... Selecting previously unselected package libdist-checkconflicts-perl. Preparing to unpack .../161-libdist-checkconflicts-perl_0.11-1.1_all.deb ... Unpacking libdist-checkconflicts-perl (0.11-1.1) ... Selecting previously unselected package libmodule-runtime-conflicts-perl. Preparing to unpack .../162-libmodule-runtime-conflicts-perl_0.003-1.1_all.deb ... Unpacking libmodule-runtime-conflicts-perl (0.003-1.1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../163-libsub-name-perl_0.26-1build1_armhf.deb ... Unpacking libsub-name-perl (0.26-1build1) ... Selecting previously unselected package libpackage-deprecationmanager-perl. Preparing to unpack .../164-libpackage-deprecationmanager-perl_0.17-1.1_all.deb ... Unpacking libpackage-deprecationmanager-perl (0.17-1.1) ... Selecting previously unselected package libpackage-stash-xs-perl. Preparing to unpack .../165-libpackage-stash-xs-perl_0.29-1build3_armhf.deb ... Unpacking libpackage-stash-xs-perl (0.29-1build3) ... Selecting previously unselected package libmoose-perl. Preparing to unpack .../166-libmoose-perl_2.2014-2_armhf.deb ... Unpacking libmoose-perl (2.2014-2) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../167-libvariable-magic-perl_0.62-1build3_armhf.deb ... Unpacking libvariable-magic-perl (0.62-1build3) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../168-libb-hooks-endofscope-perl_0.24-1.1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.24-1.1) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../169-libnamespace-clean-perl_0.27-1_all.deb ... Unpacking libnamespace-clean-perl (0.27-1) ... Selecting previously unselected package libcurl3-gnutls:armhf. Preparing to unpack .../170-libcurl3-gnutls_7.74.0-1ubuntu1_armhf.deb ... Unpacking libcurl3-gnutls:armhf (7.74.0-1ubuntu1) ... Selecting previously unselected package libwww-curl-perl. Preparing to unpack .../171-libwww-curl-perl_4.17-7build1_armhf.deb ... Unpacking libwww-curl-perl (4.17-7build1) ... Selecting previously unselected package libwww-curl-simple-perl. Preparing to unpack .../172-libwww-curl-simple-perl_0.100191-2_all.deb ... Unpacking libwww-curl-simple-perl (0.100191-2) ... Selecting previously unselected package dh-r. Preparing to unpack .../173-dh-r_20201129ubuntu1_all.deb ... Unpacking dh-r (20201129ubuntu1) ... Selecting previously unselected package libboost1.74-dev:armhf. Preparing to unpack .../174-libboost1.74-dev_1.74.0-3ubuntu2_armhf.deb ... Unpacking libboost1.74-dev:armhf (1.74.0-3ubuntu2) ... Selecting previously unselected package libboost-dev:armhf. Preparing to unpack .../175-libboost-dev_1.74.0.3ubuntu2_armhf.deb ... Unpacking libboost-dev:armhf (1.74.0.3ubuntu2) ... Selecting previously unselected package libcurl4-openssl-dev:armhf. Preparing to unpack .../176-libcurl4-openssl-dev_7.74.0-1ubuntu1_armhf.deb ... Unpacking libcurl4-openssl-dev:armhf (7.74.0-1ubuntu1) ... Selecting previously unselected package r-bioc-biocgenerics. Preparing to unpack .../177-r-bioc-biocgenerics_0.34.0-1build1_all.deb ... Unpacking r-bioc-biocgenerics (0.34.0-1build1) ... Selecting previously unselected package r-cran-formatr. Preparing to unpack .../178-r-cran-formatr_1.7-2build1_all.deb ... Unpacking r-cran-formatr (1.7-2build1) ... Selecting previously unselected package r-cran-lambda.r. Preparing to unpack .../179-r-cran-lambda.r_1.2.4-2build1_all.deb ... Unpacking r-cran-lambda.r (1.2.4-2build1) ... Selecting previously unselected package r-cran-futile.options. Preparing to unpack .../180-r-cran-futile.options_1.0.1-3build1_all.deb ... Unpacking r-cran-futile.options (1.0.1-3build1) ... Selecting previously unselected package r-cran-futile.logger. Preparing to unpack .../181-r-cran-futile.logger_1.4.3-4build1_all.deb ... Unpacking r-cran-futile.logger (1.4.3-4build1) ... Selecting previously unselected package r-cran-snow. Preparing to unpack .../182-r-cran-snow_1%3a0.4.3-2_all.deb ... Unpacking r-cran-snow (1:0.4.3-2) ... Selecting previously unselected package r-cran-bh. Preparing to unpack .../183-r-cran-bh_1.74.0-1_all.deb ... Unpacking r-cran-bh (1.74.0-1) ... Selecting previously unselected package r-bioc-biocparallel. Preparing to unpack .../184-r-bioc-biocparallel_1.22.0-2_armhf.deb ... Unpacking r-bioc-biocparallel (1.22.0-2) ... Selecting previously unselected package r-bioc-s4vectors. Preparing to unpack .../185-r-bioc-s4vectors_0.26.1-1build1_armhf.deb ... Unpacking r-bioc-s4vectors (0.26.1-1build1) ... Selecting previously unselected package r-bioc-iranges. Preparing to unpack .../186-r-bioc-iranges_2.22.2-1build1_armhf.deb ... Unpacking r-bioc-iranges (2.22.2-1build1) ... Selecting previously unselected package r-bioc-zlibbioc. Preparing to unpack .../187-r-bioc-zlibbioc_1.34.0+dfsg-1build1_all.deb ... Unpacking r-bioc-zlibbioc (1.34.0+dfsg-1build1) ... Selecting previously unselected package r-bioc-xvector. Preparing to unpack .../188-r-bioc-xvector_0.28.0-1_armhf.deb ... Unpacking r-bioc-xvector (0.28.0-1) ... Selecting previously unselected package r-cran-crayon. Preparing to unpack .../189-r-cran-crayon_1.3.4-5_all.deb ... Unpacking r-cran-crayon (1.3.4-5) ... Selecting previously unselected package r-bioc-biostrings. Preparing to unpack .../190-r-bioc-biostrings_2.56.0-1_armhf.deb ... Unpacking r-bioc-biostrings (2.56.0-1) ... Selecting previously unselected package r-cran-bitops. Preparing to unpack .../191-r-cran-bitops_1.0-6-5_armhf.deb ... Unpacking r-cran-bitops (1.0-6-5) ... Selecting previously unselected package r-cran-rcurl. Preparing to unpack .../192-r-cran-rcurl_1.98-1.2-1build1_armhf.deb ... Unpacking r-cran-rcurl (1.98-1.2-1build1) ... Selecting previously unselected package r-bioc-genomeinfodbdata. Preparing to unpack .../193-r-bioc-genomeinfodbdata_1.2.4-1_all.deb ... Unpacking r-bioc-genomeinfodbdata (1.2.4-1) ... Selecting previously unselected package r-bioc-genomeinfodb. Preparing to unpack .../194-r-bioc-genomeinfodb_1.24.2-1_all.deb ... Unpacking r-bioc-genomeinfodb (1.24.2-1) ... Selecting previously unselected package r-bioc-genomicranges. Preparing to unpack .../195-r-bioc-genomicranges_1.40.0+dfsg-1build1_armhf.deb ... Unpacking r-bioc-genomicranges (1.40.0+dfsg-1build1) ... Selecting previously unselected package r-bioc-rhtslib. Preparing to unpack .../196-r-bioc-rhtslib_1.20.0+dfsg-1build1_armhf.deb ... Unpacking r-bioc-rhtslib (1.20.0+dfsg-1build1) ... Selecting previously unselected package r-bioc-rsamtools. Preparing to unpack .../197-r-bioc-rsamtools_2.4.0-1build1_armhf.deb ... Unpacking r-bioc-rsamtools (2.4.0-1build1) ... Selecting previously unselected package sbuild-build-depends-r-bioc-bitseq-dummy. Preparing to unpack .../198-sbuild-build-depends-r-bioc-bitseq-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-r-bioc-bitseq-dummy (0.invalid.0) ... Setting up libexpat1:armhf (2.2.10-1) ... Setting up libpcrecpp0v5:armhf (2:8.39-13) ... Setting up libpipeline1:armhf (1.5.3-1) ... Setting up libgraphite2-3:armhf (1.3.14-1) ... Setting up libpixman-1-0:armhf (0.40.0-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:armhf (1:1.0.9-0ubuntu1) ... Setting up libncurses-dev:armhf (6.2+20201114-2) ... Setting up libpsl5:armhf (0.21.0-1.1ubuntu1) ... Setting up libboost1.74-dev:armhf (1.74.0-3ubuntu2) ... Setting up bsdextrautils (2.36.1-1ubuntu2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libpcre16-3:armhf (2:8.39-13) ... Setting up libicu67:armhf (67.1-5) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libdatrie1:armhf (0.2.12-3) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-1build3) ... Setting up libglib2.0-0:armhf (2.66.4-1) ... No schema files found: doing nothing. Setting up unzip (6.0-26ubuntu1) ... Setting up libdebhelper-perl (13.3.1ubuntu1) ... Setting up libbrotli1:armhf (1.0.9-2build2) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up x11-common (1:7.7+19ubuntu15) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libtry-tiny-perl (0.30-1) ... Setting up libnghttp2-14:armhf (1.42.0-1) ... Setting up libmagic1:armhf (1:5.39-3) ... Setting up gettext-base (0.21-3ubuntu2) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up file (1:5.39-3) ... Setting up libreadline-dev:armhf (8.1-1) ... Setting up libjbig0:armhf (2.1-3.1build1) ... Setting up libpcre2-16-0:armhf (10.35-2ubuntu1) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2ubuntu1) ... Setting up zip (3.0-11build1) ... Setting up libpackage-stash-xs-perl (0.29-1build3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libpcre2-32-0:armhf (10.35-2ubuntu1) ... Setting up libblas3:armhf (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libalgorithm-c3-perl (0.11-1) ... Setting up libswitch-perl (2.17-2.1) ... Setting up libfreetype6:armhf (2.10.4+dfsg-1) ... Setting up libx11-data (2:1.7.0-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libsigsegv2:armhf (2.13-1) ... Setting up libfribidi0:armhf (1.0.8-2) ... Setting up libpcre32-3:armhf (2:8.39-13) ... Setting up libvariable-magic-perl (0.62-1build3) ... Setting up libio-html-perl (1.001-1.1) ... Setting up libtcl8.6:armhf (8.6.11+dfsg-1) ... Setting up autopoint (0.21-3ubuntu2) ... Setting up libwebp6:armhf (0.6.1-2) ... Setting up libb-hooks-op-check-perl (0.22-1build3) ... Setting up icu-devtools (67.1-5) ... Setting up pkg-config (0.29.2-1ubuntu1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up ucf (3.0043) ... Setting up libpcre2-posix2:armhf (10.35-2ubuntu1) ... Setting up libjpeg-turbo8:armhf (2.0.3-0ubuntu2) ... Setting up libparams-util-perl (1.102-1build1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:armhf (0.9.5-1) ... Setting up libgfortran5:armhf (11-20210123-1ubuntu1) ... Setting up libroken18-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtimedate-perl (2.3300-1) ... Setting up liblzma-dev:armhf (5.2.4-1ubuntu1) ... Setting up libsub-name-perl (0.26-1build1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu4) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libncurses5-dev:armhf (6.2+20201114-2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:armhf (2.6.7-1ubuntu1) ... Setting up libthai-data (0.1.28-3) ... Setting up libdevel-globaldestruction-perl (0.14-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libboost-dev:armhf (1.74.0.3ubuntu2) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.182-3) ... Setting up libicu-dev:armhf (67.1-5) ... Setting up libxml2:armhf (2.9.10+dfsg-6.3build1) ... Setting up xdg-utils (1.1.3-2ubuntu2) ... Setting up liburi-perl (5.05-1) ... Setting up libblas-dev:armhf (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libheimbase1-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libbz2-dev:armhf (1.0.8-4ubuntu2) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.10.0-1) ... Setting up r-cran-bh (1.74.0-1) ... Setting up libpaper1:armhf (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libjpeg-turbo8-dev:armhf (2.0.3-0ubuntu2) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu1) ... Setting up liblapack3:armhf (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.14-2.1) ... Setting up gettext (0.21-3ubuntu2) ... Setting up libpcre2-dev:armhf (10.35-2ubuntu1) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-render0:armhf (1.14-2.1) ... Setting up libpcre3-dev:armhf (2:8.39-13) ... Setting up libgfortran-11-dev:armhf (11-20210123-1ubuntu1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu2) ... Setting up libasn1-8-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libpng-dev:armhf (1.6.37-3) ... Setting up m4 (1.4.18-5) ... Setting up libxcb-shm0:armhf (1.14-2.1) ... Setting up libpaper-utils (1.1.28) ... Setting up libclass-c3-perl (0.35-1) ... Setting up libdevel-callchecker-perl (0.008-1ubuntu2) ... Setting up libhcrypto4-heimdal:armhf (7.7.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:armhf (0.1.28-3) ... Setting up libwind0-heimdal:armhf (7.7.0+dfsg-2) ... Setting up liblapack-dev:armhf (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdata-optlist-perl (0.110-1.1) ... Setting up gfortran-11 (11-20210123-1ubuntu1) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.10.0-1) ... Setting up dwz (0.13+20210126-1) ... Setting up groff-base (1.22.4-6) ... Setting up libx11-6:armhf (2:1.7.0-2) ... Setting up libtiff5:armhf (4.1.0+git201212-1ubuntu1) ... Setting up libfontconfig1:armhf (2.13.1-4.2ubuntu2) ... Setting up libmro-compat-perl (0.13-1) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libxmuu1:armhf (2:1.1.3-0ubuntu1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libhttp-message-perl (6.27-1) ... Setting up libeval-closure-perl (0.14-1) ... Setting up automake (1:1.16.3-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-4.2ubuntu2) ... Regenerating fonts cache... done. Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libhx509-5-heimdal:armhf (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl (0.015-1build3) ... Setting up libpango-1.0-0:armhf (1.48.0-1) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up libxext6:armhf (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:11-20201114-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.16.0-5) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdist-checkconflicts-perl (0.11-1.1) ... Setting up libxt6:armhf (1:1.2.0-1) ... Setting up xauth (1:1.1-1) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:armhf (1.48.0-1) ... Setting up libpangocairo-1.0-0:armhf (1.48.0-1) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libxft2:armhf (2.3.3-0ubuntu1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libtk8.6:armhf (8.6.11-2) ... Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libclass-load-perl (0.25-1) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libpackage-deprecationmanager-perl (0.17-1.1) ... Setting up libdevel-overloadinfo-perl (0.005-1) ... Setting up libclass-load-xs-perl (0.10-1build6) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libmoose-perl (2.2014-2) ... Setting up libldap-2.4-2:armhf (2.4.56+dfsg-1ubuntu2) ... Setting up libcurl3-gnutls:armhf (7.74.0-1ubuntu1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up libcurl4:armhf (7.74.0-1ubuntu1) ... Setting up libwww-curl-perl (4.17-7build1) ... Setting up libcurl4-openssl-dev:armhf (7.74.0-1ubuntu1) ... Setting up r-base-core (4.0.3-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.3.4-5) ... Setting up r-cran-futile.options (1.0.1-3build1) ... Setting up r-cran-formatr (1.7-2build1) ... Setting up r-bioc-genomeinfodbdata (1.2.4-1) ... Setting up r-bioc-biocgenerics (0.34.0-1build1) ... Setting up r-base-dev (4.0.3-1) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Setting up r-cran-lambda.r (1.2.4-2build1) ... Setting up r-cran-snow (1:0.4.3-2) ... Setting up r-cran-bitops (1.0-6-5) ... Setting up r-bioc-zlibbioc (1.34.0+dfsg-1build1) ... Setting up r-bioc-s4vectors (0.26.1-1build1) ... Setting up r-cran-futile.logger (1.4.3-4build1) ... Setting up r-bioc-iranges (2.22.2-1build1) ... Setting up r-cran-rcurl (1.98-1.2-1build1) ... Setting up r-bioc-biocparallel (1.22.0-2) ... Setting up r-bioc-rhtslib (1.20.0+dfsg-1build1) ... Setting up r-bioc-genomeinfodb (1.24.2-1) ... Setting up r-bioc-xvector (0.28.0-1) ... Setting up r-bioc-genomicranges (1.40.0+dfsg-1build1) ... Setting up r-bioc-biostrings (2.56.0-1) ... Setting up r-bioc-rsamtools (2.4.0-1build1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.3.1ubuntu1) ... Setting up dh-r (20201129ubuntu1) ... Setting up sbuild-build-depends-r-bioc-bitseq-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-135-generic arm64 (armv7l) Toolchain package versions: binutils_2.36-2ubuntu1 dpkg-dev_1.20.7.1ubuntu2 g++-10_10.2.1-6ubuntu1 g++-11_11-20210123-1ubuntu1 gcc-10_10.2.1-6ubuntu1 gcc-11_11-20210123-1ubuntu1 libc6-dev_2.32-0ubuntu6 libstdc++-10-dev_10.2.1-6ubuntu1 libstdc++-11-dev_11-20210123-1ubuntu1 libstdc++6_11-20210123-1ubuntu1 linux-libc-dev_5.8.0-36.40+21.04.1 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1build1 apt_2.1.18 autoconf_2.69-14 automake_1:1.16.3-2ubuntu1 autopoint_0.21-3ubuntu2 autotools-dev_20180224.1+nmu1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1-1ubuntu1 binutils_2.36-2ubuntu1 binutils-arm-linux-gnueabihf_2.36-2ubuntu1 binutils-common_2.36-2ubuntu1 bsdextrautils_2.36.1-1ubuntu2 bsdutils_1:2.36.1-1ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-4ubuntu2 cpp_4:11-20201114-1ubuntu1 cpp-10_10.2.1-6ubuntu1 cpp-11_11-20210123-1ubuntu1 dash_0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 dctrl-tools_2.24-3 debconf_1.5.74 debhelper_13.3.1ubuntu1 debianutils_4.11.2 dh-autoreconf_19 dh-r_20201129ubuntu1 dh-strip-nondeterminism_1.10.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.7.1ubuntu2 dpkg-dev_1.20.7.1ubuntu2 dwz_0.13+20210126-1 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.7.0-1ubuntu2 fontconfig_2.13.1-4.2ubuntu2 fontconfig-config_2.13.1-4.2ubuntu2 fonts-dejavu-core_2.37-2 g++_4:11-20201114-1ubuntu1 g++-10_10.2.1-6ubuntu1 g++-11_11-20210123-1ubuntu1 gcc_4:11-20201114-1ubuntu1 gcc-10_10.2.1-6ubuntu1 gcc-10-base_10.2.1-6ubuntu1 gcc-11_11-20210123-1ubuntu1 gcc-11-base_11-20210123-1ubuntu1 gettext_0.21-3ubuntu2 gettext-base_0.21-3ubuntu2 gfortran_4:11-20201114-1ubuntu1 gfortran-11_11-20210123-1ubuntu1 gpg_2.2.20-1ubuntu2 gpg-agent_2.2.20-1ubuntu2 gpgconf_2.2.20-1ubuntu2 gpgv_2.2.20-1ubuntu2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-2ubuntu3 hostname_3.23 icu-devtools_67.1-5 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-9 libalgorithm-c3-perl_0.11-1 libapparmor1_3.0.0-0ubuntu5 libapt-pkg6.0_2.1.18 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan6_11-20210123-1ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.3-7.1 libatomic1_11-20210123-1ubuntu1 libattr1_1:2.4.48-6 libaudit-common_1:2.8.5-3ubuntu3 libaudit1_1:2.8.5-3ubuntu3 libb-hooks-endofscope-perl_0.24-1.1 libb-hooks-op-check-perl_0.22-1build3 libbinutils_2.36-2ubuntu1 libblas-dev_3.9.0-3ubuntu1 libblas3_3.9.0-3ubuntu1 libblkid1_2.36.1-1ubuntu2 libboost-dev_1.74.0.3ubuntu2 libboost1.74-dev_1.74.0-3ubuntu2 libbrotli1_1.0.9-2build2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4ubuntu2 libbz2-dev_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu6 libc-dev-bin_2.32-0ubuntu6 libc6_2.32-0ubuntu6 libc6-dev_2.32-0ubuntu6 libcairo2_1.16.0-5 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1 libcc1-0_11-20210123-1ubuntu1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1build6 libcom-err2_1.45.6-1ubuntu1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.4-1ubuntu1 libctf-nobfd0_2.36-2ubuntu1 libctf0_2.36-2ubuntu1 libcurl3-gnutls_7.74.0-1ubuntu1 libcurl4_7.74.0-1ubuntu1 libcurl4-openssl-dev_7.74.0-1ubuntu1 libdata-optlist-perl_0.110-1.1 libdatrie1_0.2.12-3 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.256ubuntu1 libdebhelper-perl_13.3.1ubuntu1 libdevel-callchecker-perl_0.008-1ubuntu2 libdevel-globaldestruction-perl_0.14-1.1 libdevel-overloadinfo-perl_0.005-1 libdevel-stacktrace-perl_2.0400-1 libdevmapper1.02.1_2:1.02.167-1ubuntu4 libdist-checkconflicts-perl_0.11-1.1 libdpkg-perl_1.20.7.1ubuntu2 libdynaloader-functions-perl_0.003-1.1 libelf1_0.182-3 libencode-locale-perl_1.05-1.1 libeval-closure-perl_0.14-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.3-1.1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.10.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2ubuntu2 libfreetype6_2.10.4+dfsg-1 libfribidi0_1.0.8-2 libgcc-10-dev_10.2.1-6ubuntu1 libgcc-11-dev_11-20210123-1ubuntu1 libgcc-s1_11-20210123-1ubuntu1 libgcrypt20_1.8.7-2ubuntu1 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran-11-dev_11-20210123-1ubuntu1 libgfortran5_11-20210123-1ubuntu1 libglib2.0-0_2.66.4-1 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.7.0-5ubuntu1 libgomp1_11-20210123-1ubuntu1 libgpg-error0_1.38-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-4 libgssapi3-heimdal_7.7.0+dfsg-2 libharfbuzz0b_2.6.7-1ubuntu1 libhcrypto4-heimdal_7.7.0+dfsg-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.7-2 libhttp-date-perl_6.05-1 libhttp-message-perl_6.27-1 libhx509-5-heimdal_7.7.0+dfsg-2 libice6_2:1.0.10-1 libicu-dev_67.1-5 libicu67_67.1-5 libidn2-0_2.3.0-5 libio-html-perl_1.001-1.1 libip4tc2_1.8.5-3ubuntu4 libisl22_0.22.1-1 libisl23_0.23-1 libjbig0_2.1-3.1build1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.3-0ubuntu2 libjpeg-turbo8-dev_2.0.3-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c5_0.15-2 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 liblapack-dev_3.9.0-3ubuntu1 liblapack3_3.9.0-3ubuntu1 libldap-2.4-2_2.4.56+dfsg-1ubuntu2 liblockfile-bin_1.17-1 liblockfile1_1.17-1 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.3-0ubuntu1 liblzma-dev_5.2.4-1ubuntu1 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmodule-implementation-perl_0.09-1.1 libmodule-runtime-conflicts-perl_0.003-1.1 libmodule-runtime-perl_0.016-1 libmoose-perl_2.2014-2 libmount1_2.36.1-1ubuntu2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmro-compat-perl_0.13-1 libnamespace-clean-perl_0.27-1 libncurses-dev_6.2+20201114-2 libncurses5-dev_6.2+20201114-2 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle8_3.7-2 libnghttp2-14_1.42.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.22-1 libpackage-deprecationmanager-perl_0.17-1.1 libpackage-stash-perl_0.39-1 libpackage-stash-xs-perl_0.29-1build3 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpango-1.0-0_1.48.0-1 libpangocairo-1.0-0_1.48.0-1 libpangoft2-1.0-0_1.48.0-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-1build3 libparams-util-perl_1.102-1build1 libpcre16-3_2:8.39-13 libpcre2-16-0_10.35-2ubuntu1 libpcre2-32-0_10.35-2ubuntu1 libpcre2-8-0_10.35-2ubuntu1 libpcre2-dev_10.35-2ubuntu1 libpcre2-posix2_10.35-2ubuntu1 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.30_5.30.3-4 libperl5.32_5.32.0-6 libpipeline1_1.5.3-1 libpixman-1-0_0.40.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libpsl5_0.21.0-1.1ubuntu1 libreadline-dev_8.1-1 libreadline8_8.1-1 libroken18-heimdal_7.7.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libsasl2-2_2.1.27+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27+dfsg-2ubuntu1 libseccomp2_2.4.3-1ubuntu6 libselinux1_3.1-2build2 libsemanage-common_3.1-1build2 libsemanage1_3.1-1build2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsm6_2:1.2.3-1 libsmartcols1_2.36.1-1ubuntu2 libsqlite3-0_3.34.0-1 libss2_1.45.6-1ubuntu1 libssh-4_0.9.5-1 libssl1.1_1.1.1f-1ubuntu5 libstdc++-10-dev_10.2.1-6ubuntu1 libstdc++-11-dev_11-20210123-1ubuntu1 libstdc++6_11-20210123-1ubuntu1 libsub-exporter-perl_0.987-1 libsub-exporter-progressive-perl_0.001013-1 libsub-identify-perl_0.14-1build3 libsub-install-perl_0.928-1.1 libsub-name-perl_0.26-1build1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2.1 libsystemd0_247.1-4ubuntu1 libtasn1-6_4.16.0-2 libtcl8.6_8.6.11+dfsg-1 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git201212-1ubuntu1 libtimedate-perl_2.3300-1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtk8.6_8.6.11-2 libtool_2.4.6-15 libtry-tiny-perl_0.30-1 libubsan1_11-20210123-1ubuntu1 libuchardet0_0.0.7-1 libudev1_247.1-4ubuntu1 libunistring2_0.9.10-4 liburi-perl_5.05-1 libuuid1_2.36.1-1ubuntu2 libvariable-magic-perl_0.62-1build3 libwebp6_0.6.1-2 libwind0-heimdal_7.7.0+dfsg-2 libwww-curl-perl_4.17-7build1 libwww-curl-simple-perl_0.100191-2 libx11-6_2:1.7.0-2 libx11-data_2:1.7.0-2 libxau6_1:1.0.9-0ubuntu1 libxcb-render0_1.14-2.1 libxcb-shm0_1.14-2.1 libxcb1_1.14-2.1 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxft2_2.3.3-0ubuntu1 libxml2_2.9.10+dfsg-6.3build1 libxmuu1_2:1.1.3-0ubuntu1 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libxxhash0_0.8.0-2 libzstd1_1.4.8+dfsg-1 linux-libc-dev_5.8.0-36.40+21.04.1 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu8 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 lto-disabled-list_1 m4_1.4.18-5 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-1ubuntu2 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 openssl_1.1.1f-1ubuntu5 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu8 patch_2.7.6-7 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4build1 pkg-config_0.29.2-1ubuntu1 pkgbinarymangler_146 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 r-base-core_4.0.3-1 r-base-dev_4.0.3-1 r-bioc-biocgenerics_0.34.0-1build1 r-bioc-biocparallel_1.22.0-2 r-bioc-biostrings_2.56.0-1 r-bioc-genomeinfodb_1.24.2-1 r-bioc-genomeinfodbdata_1.2.4-1 r-bioc-genomicranges_1.40.0+dfsg-1build1 r-bioc-iranges_2.22.2-1build1 r-bioc-rhtslib_1.20.0+dfsg-1build1 r-bioc-rsamtools_2.4.0-1build1 r-bioc-s4vectors_0.26.1-1build1 r-bioc-xvector_0.28.0-1 r-bioc-zlibbioc_1.34.0+dfsg-1build1 r-cran-bh_1.74.0-1 r-cran-bitops_1.0-6-5 r-cran-crayon_1.3.4-5 r-cran-formatr_1.7-2build1 r-cran-futile.logger_1.4.3-4build1 r-cran-futile.options_1.0.1-3build1 r-cran-lambda.r_1.2.4-2build1 r-cran-rcurl_1.98-1.2-1build1 r-cran-snow_1:0.4.3-2 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-bitseq-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_247.1-4ubuntu1 systemd-sysv_247.1-4ubuntu1 systemd-timesyncd_247.1-4ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.32+dfsg-1 tzdata_2021a-1ubuntu1 ubuntu-keyring_2020.06.17.1 ucf_3.0043 unzip_6.0-26ubuntu1 util-linux_2.36.1-1ubuntu2 x11-common_1:7.7+19ubuntu15 xauth_1:1.1-1 xdg-utils_1.1.3-2ubuntu2 xz-utils_5.2.4-1ubuntu1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun May 31 06:06:06 2020 UTC gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-bitseq_1.32.0+dfsg-1build1.dsc dpkg-source: info: extracting r-bioc-bitseq in /<>/r-bioc-bitseq-1.32.0+dfsg dpkg-source: info: unpacking r-bioc-bitseq_1.32.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-bitseq_1.32.0+dfsg-1build1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20672233 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20672233 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20672233 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-bitseq dpkg-buildpackage: info: source version 1.32.0+dfsg-1build1 dpkg-buildpackage: info: source distribution groovy dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R Package: BitSeq Version: 1.32.0 I: Building using R version 4.0.3-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 31 May 2020 06:06:06 +0000 mkdir -p /<>/r-bioc-bitseq-1.32.0\+dfsg/debian/r-bioc-bitseq/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-bitseq-1.32.0\+dfsg/debian/r-bioc-bitseq/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 31 May 2020 06:06:06 +0000'" * installing *source* package ‘BitSeq’ ... ** using staged installation configure: Version def: -DBS_VERSION=\"1.32.0\" checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking for g++ -std=gnu++11 option to support OpenMP... -fopenmp configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/Makevars.win ** libs make[1]: Entering directory '/<>/r-bioc-bitseq-1.32.0+dfsg/src' g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ArgumentParser.cpp -o ArgumentParser.o In file included from /usr/include/c++/11/vector:72, from ArgumentParser.h:6, from ArgumentParser.cpp:5: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector tokenizeD(const string&, const string&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CollapsedSampler.cpp -o CollapsedSampler.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c FileHeader.cpp -o FileHeader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c GibbsParameters.cpp -o GibbsParameters.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c GibbsSampler.cpp -o GibbsSampler.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c MyTimer.cpp -o MyTimer.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PosteriorSamples.cpp -o PosteriorSamples.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_BitSeq.cpp -o R_init_BitSeq.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ReadDistribution.cpp -o ReadDistribution.o In file included from /usr/include/c++/11/vector:72, from ReadDistribution.h:4, from ReadDistribution.cpp:7: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ReadDistribution.h:4, from ReadDistribution.cpp:7: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘ReadDistribution::ReadDistribution()’: /usr/include/c++/11/bits/stl_vector.h:960:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:960:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void ReadDistribution::updateMismatchFreq(bam1_t*)’: /usr/include/c++/11/bits/stl_vector.h:960:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:960:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ReadDistribution.h:5, from ReadDistribution.cpp:7: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2441:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2441 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ReadDistribution.h:5, from ReadDistribution.cpp:7: /usr/include/c++/11/bits/stl_map.h: In member function ‘double ReadDistribution::getWeightNorm(long int, ns_rD::readT, long int)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘bool ReadDistribution::observed(ns_rD::fragmentP)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rhtslib_bam_plbuf.c -o Rhtslib_bam_plbuf.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rhtslib_sam.c -o Rhtslib_sam.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Sampler.cpp -o Sampler.o In file included from /usr/include/c++/11/vector:72, from Sampler.h:4, from Sampler.cpp:5: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from Sampler.h:4, from Sampler.cpp:5: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void Sampler::appendFile()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SimpleSparse.cpp -o SimpleSparse.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TagAlignments.cpp -o TagAlignments.o In file included from /usr/include/c++/11/vector:72, from TagAlignments.h:5, from TagAlignments.cpp:3: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from TagAlignments.h:5, from TagAlignments.cpp:3: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void TagAlignments::pushAlignmentL(long int, double)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TranscriptExpression.cpp -o TranscriptExpression.o In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from TranscriptExpression.cpp:1: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = trExpInfoT; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from TranscriptExpression.cpp:1: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In member function ‘void TranscriptExpression::doSort(bool)’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TranscriptInfo.cpp -o TranscriptInfo.o In file included from /usr/include/c++/11/vector:72, from TranscriptInfo.h:4, from TranscriptInfo.cpp:4: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const transcriptT&}; _Tp = transcriptT; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from TranscriptInfo.h:4, from TranscriptInfo.cpp:4: /usr/include/c++/11/bits/stl_vector.h: In member function ‘bool TranscriptInfo::setInfo(std::vector >, std::vector >, std::vector)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘bool TranscriptInfo::readInfo(std::string)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TranscriptSequence.cpp -o TranscriptSequence.o In file included from /usr/include/c++/11/vector:72, from TranscriptSequence.h:6, from TranscriptSequence.cpp:6: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const trSeqInfoT&}; _Tp = trSeqInfoT; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from TranscriptSequence.h:6, from TranscriptSequence.cpp:6: /usr/include/c++/11/bits/stl_vector.h: In member function ‘bool TranscriptSequence::readSequence(std::string, refFormatT)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c VariationalBayes.cpp -o VariationalBayes.o In file included from /usr/include/c++/11/vector:72, from /usr/include/boost/random/detail/polynomial.hpp:18, from /usr/include/boost/random/mersenne_twister.hpp:32, from VariationalBayes.h:4, from VariationalBayes.cpp:12: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {boost::random::gamma_distribution::param_type}; _Tp = boost::random::gamma_distribution::param_type; _Alloc = std::allocator::param_type>]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::param_type>::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void VariationalBayes::generateSamples(long int, const string&, const std::vector*, std::ofstream*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::param_type*, std::vector::param_type> >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c common.cpp -o common.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c estimateDE.cpp -o estimateDE.o estimateDE.cpp:57:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 57 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ estimateDE.cpp:57:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 57 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c estimateExpression.cpp -o estimateExpression.o estimateExpression.cpp:532:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 532 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ estimateExpression.cpp:532:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 532 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from estimateExpression.cpp:1: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from estimateExpression.cpp:1: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void MCMC(TagAlignments*, gibbsParameters&, ArgumentParser&)’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c estimateHyperPar.cpp -o estimateHyperPar.o estimateHyperPar.cpp:62:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 62 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ estimateHyperPar.cpp:62:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 62 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from estimateHyperPar.cpp:6: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ns_params::paramT; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from estimateHyperPar.cpp:6: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/boost/random/detail/polynomial.hpp:18, from /usr/include/boost/random/mersenne_twister.hpp:32, from estimateHyperPar.cpp:10: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ns_params::paramT&}; _Tp = ns_params::paramT; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 171 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/boost/random/detail/polynomial.hpp:18, from /usr/include/boost/random/mersenne_twister.hpp:32, from estimateHyperPar.cpp:10: /usr/include/c++/11/bits/stl_vector.h: In function ‘int estimateHyperPar(int*, char**)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from estimateHyperPar.cpp:6: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/boost/random/detail/polynomial.hpp:18, from /usr/include/boost/random/mersenne_twister.hpp:32, from estimateHyperPar.cpp:10: /usr/include/c++/11/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1431 | { return _M_erase(begin() + (__position - cbegin())); } | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1431 | { return _M_erase(begin() + (__position - cbegin())); } | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1431 | { return _M_erase(begin() + (__position - cbegin())); } | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c estimateVBExpression.cpp -o estimateVBExpression.o estimateVBExpression.cpp:126:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 126 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ estimateVBExpression.cpp:126:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 126 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getGeneExpression.cpp -o getGeneExpression.o getGeneExpression.cpp:33:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 33 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ getGeneExpression.cpp:33:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 33 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getVariance.cpp -o getVariance.o getVariance.cpp:28:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 28 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ getVariance.cpp:28:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 28 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getWithinGeneExpression.cpp -o getWithinGeneExpression.o getWithinGeneExpression.cpp:54:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 54 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ getWithinGeneExpression.cpp:54:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 54 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lowess.cpp -o lowess.o In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from lowess.cpp:17: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from lowess.cpp:17: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void lowess(const std::vector&, const std::vector&, double, long int, double, std::vector&, std::vector&, std::vector&)’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c misc.cpp -o misc.o In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from misc.cpp:1: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ns_params::paramT; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from misc.cpp:1: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void ns_misc::computeCI(double, std::vector*, double*, double*)’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ArgumentParser.h:6, from misc.h:6, from misc.cpp:5: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ns_params::paramT&}; _Tp = ns_params::paramT; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ArgumentParser.h:6, from misc.h:6, from misc.cpp:5: /usr/include/c++/11/bits/stl_vector.h: In function ‘bool ns_params::readParams(const string&, std::vector*, std::ofstream*)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from misc.cpp:1: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parseAlignment.cpp -o parseAlignment.o parseAlignment.cpp:102:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 102 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ parseAlignment.cpp:102:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 102 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ArgumentParser.h:6, from parseAlignment.cpp:7: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ns_parseAlignment::TagAlignment}; _Tp = ns_parseAlignment::TagAlignment; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘int parseAlignment(int*, char**)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-pIkrMk/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transposeFiles.cpp -o transposeFiles.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o BitSeq.so ArgumentParser.o CollapsedSampler.o FileHeader.o GibbsParameters.o GibbsSampler.o MyTimer.o PosteriorSamples.o R_init_BitSeq.o ReadDistribution.o Rhtslib_bam_plbuf.o Rhtslib_sam.o Sampler.o SimpleSparse.o TagAlignments.o TranscriptExpression.o TranscriptInfo.o TranscriptSequence.o VariationalBayes.o common.o estimateDE.o estimateExpression.o estimateHyperPar.o estimateVBExpression.o getGeneExpression.o getVariance.o getWithinGeneExpression.o lowess.o misc.o parseAlignment.o transposeFiles.o /usr/lib/R/site-library/Rhtslib/usrlib/libhts.a -lcurl -fopenmp -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/r-bioc-bitseq-1.32.0+dfsg/src' make[1]: Entering directory '/<>/r-bioc-bitseq-1.32.0+dfsg/src' make[1]: Leaving directory '/<>/r-bioc-bitseq-1.32.0+dfsg/src' installing to /<>/r-bioc-bitseq-1.32.0+dfsg/debian/r-bioc-bitseq/usr/lib/R/site-library/00LOCK-r-bioc-bitseq-1.32.0+dfsg/00new/BitSeq/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BitSeq) rm -f /<>/r-bioc-bitseq-1.32.0\+dfsg/debian/r-bioc-bitseq/usr/lib/R/site-library/BitSeq/LICENSE Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303. I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.99.3) I: Using r-bioc-edger for Suggests:edgeR I: Using r-bioc-deseq for Suggests:DESeq I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-bioc-iranges for Imports:IRanges I: Using r-bioc-rhtslib for LinkingTo:Rhtslib (>= 1.15.5) I: BioConductor API version: r-api-bioc-3.11 I: Use r-bioc-bitseq as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 146 pkgstriptranslations: processing r-bioc-bitseq (in debian/r-bioc-bitseq); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/r-bioc-bitseq/DEBIAN/control, package r-bioc-bitseq, directory debian/r-bioc-bitseq pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-bitseq ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-bitseq' in '../r-bioc-bitseq_1.32.0+dfsg-1build1_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-bitseq_1.32.0+dfsg-1build1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-02-06T15:41:34Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-bitseq_1.32.0+dfsg-1build1_armhf.changes: ------------------------------------------------ Format: 1.8 Date: Sun, 31 May 2020 06:06:06 +0000 Source: r-bioc-bitseq Binary: r-bioc-bitseq Architecture: armhf Version: 1.32.0+dfsg-1build1 Distribution: hirsute Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: r-bioc-bitseq - transcript expression inference and analysis for RNA-seq data Changes: r-bioc-bitseq (1.32.0+dfsg-1build1) groovy; urgency=medium . * No-change rebuild against r-api-4.0 Checksums-Sha1: e931dedcf34877049dcd4b673c0d65645f61e0c9 11624 r-bioc-bitseq_1.32.0+dfsg-1build1_armhf.buildinfo fa55fd0d9a1196f1756811f7ddabba184d3c2f23 1083720 r-bioc-bitseq_1.32.0+dfsg-1build1_armhf.deb Checksums-Sha256: 804a145e52e6621b7d25de73b685059acf7fbc7c837b5c78ac08ed21b44014d7 11624 r-bioc-bitseq_1.32.0+dfsg-1build1_armhf.buildinfo 27d9d576cc719789ec849f59b385940ed0a87382ea1acba369cdb58e76344f6e 1083720 r-bioc-bitseq_1.32.0+dfsg-1build1_armhf.deb Files: b859f1d3727edab9880ca3b2500a1340 11624 gnu-r optional r-bioc-bitseq_1.32.0+dfsg-1build1_armhf.buildinfo 4a2d13555c6e5235dda010f71f477623 1083720 gnu-r optional r-bioc-bitseq_1.32.0+dfsg-1build1_armhf.deb Original-Maintainer: Debian R Packages Maintainers +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-bitseq Binary: r-bioc-bitseq Architecture: armhf Version: 1.32.0+dfsg-1build1 Checksums-Md5: 4a2d13555c6e5235dda010f71f477623 1083720 r-bioc-bitseq_1.32.0+dfsg-1build1_armhf.deb Checksums-Sha1: fa55fd0d9a1196f1756811f7ddabba184d3c2f23 1083720 r-bioc-bitseq_1.32.0+dfsg-1build1_armhf.deb Checksums-Sha256: 27d9d576cc719789ec849f59b385940ed0a87382ea1acba369cdb58e76344f6e 1083720 r-bioc-bitseq_1.32.0+dfsg-1build1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Sat, 06 Feb 2021 15:41:33 +0000 Build-Path: /<>/r-bioc-bitseq-1.32.0+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-2ubuntu1), autopoint (= 0.21-3ubuntu2), autotools-dev (= 20180224.1+nmu1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1-1ubuntu1), binutils (= 2.36-2ubuntu1), binutils-arm-linux-gnueabihf (= 2.36-2ubuntu1), binutils-common (= 2.36-2ubuntu1), bsdextrautils (= 2.36.1-1ubuntu2), bsdutils (= 1:2.36.1-1ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), ca-certificates (= 20200601), coreutils (= 8.32-4ubuntu2), cpp (= 4:11-20201114-1ubuntu1), cpp-10 (= 10.2.1-6ubuntu1), cpp-11 (= 11-20210123-1ubuntu1), dash (= 0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1), dctrl-tools (= 2.24-3), debconf (= 1.5.74), debhelper (= 13.3.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-r (= 20201129ubuntu1), dh-strip-nondeterminism (= 1.10.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.7.1ubuntu2), dpkg-dev (= 1.20.7.1ubuntu2), dwz (= 0.13+20210126-1), file (= 1:5.39-3), findutils (= 4.7.0-1ubuntu2), fontconfig (= 2.13.1-4.2ubuntu2), fontconfig-config (= 2.13.1-4.2ubuntu2), fonts-dejavu-core (= 2.37-2), g++ (= 4:11-20201114-1ubuntu1), g++-11 (= 11-20210123-1ubuntu1), gcc (= 4:11-20201114-1ubuntu1), gcc-10 (= 10.2.1-6ubuntu1), gcc-10-base (= 10.2.1-6ubuntu1), gcc-11 (= 11-20210123-1ubuntu1), gcc-11-base (= 11-20210123-1ubuntu1), gettext (= 0.21-3ubuntu2), gettext-base (= 0.21-3ubuntu2), gfortran (= 4:11-20201114-1ubuntu1), gfortran-11 (= 11-20210123-1ubuntu1), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-2ubuntu3), hostname (= 3.23), icu-devtools (= 67.1-5), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-9), libalgorithm-c3-perl (= 0.11-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11-20210123-1ubuntu1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 11-20210123-1ubuntu1), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:2.8.5-3ubuntu3), libaudit1 (= 1:2.8.5-3ubuntu3), libb-hooks-endofscope-perl (= 0.24-1.1), libb-hooks-op-check-perl (= 0.22-1build3), libbinutils (= 2.36-2ubuntu1), libblas-dev (= 3.9.0-3ubuntu1), libblas3 (= 3.9.0-3ubuntu1), libblkid1 (= 2.36.1-1ubuntu2), libboost-dev (= 1.74.0.3ubuntu2), libboost1.74-dev (= 1.74.0-3ubuntu2), libbrotli1 (= 1.0.9-2build2), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-4ubuntu2), libbz2-dev (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu6), libc-dev-bin (= 2.32-0ubuntu6), libc6 (= 2.32-0ubuntu6), libc6-dev (= 2.32-0ubuntu6), libcairo2 (= 1.16.0-5), libcap-ng0 (= 0.7.9-2.2build1), libcap2 (= 1:2.44-1), libcc1-0 (= 11-20210123-1ubuntu1), libclass-c3-perl (= 0.35-1), libclass-load-perl (= 0.25-1), libclass-load-xs-perl (= 0.10-1build6), libcom-err2 (= 1.45.6-1ubuntu1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.36-2ubuntu1), libctf0 (= 2.36-2ubuntu1), libcurl3-gnutls (= 7.74.0-1ubuntu1), libcurl4 (= 7.74.0-1ubuntu1), libcurl4-openssl-dev (= 7.74.0-1ubuntu1), libdata-optlist-perl (= 0.110-1.1), libdatrie1 (= 0.2.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.256ubuntu1), libdebhelper-perl (= 13.3.1ubuntu1), libdevel-callchecker-perl (= 0.008-1ubuntu2), libdevel-globaldestruction-perl (= 0.14-1.1), libdevel-overloadinfo-perl (= 0.005-1), libdevel-stacktrace-perl (= 2.0400-1), libdist-checkconflicts-perl (= 0.11-1.1), libdpkg-perl (= 1.20.7.1ubuntu2), libdynaloader-functions-perl (= 0.003-1.1), libelf1 (= 0.182-3), libencode-locale-perl (= 1.05-1.1), libeval-closure-perl (= 0.14-1), libexpat1 (= 2.2.10-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-stripnondeterminism-perl (= 1.10.0-1), libfile-which-perl (= 1.23-1), libfontconfig1 (= 2.13.1-4.2ubuntu2), libfreetype6 (= 2.10.4+dfsg-1), libfribidi0 (= 1.0.8-2), libgcc-10-dev (= 10.2.1-6ubuntu1), libgcc-11-dev (= 11-20210123-1ubuntu1), libgcc-s1 (= 11-20210123-1ubuntu1), libgcrypt20 (= 1.8.7-2ubuntu1), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgfortran-11-dev (= 11-20210123-1ubuntu1), libgfortran5 (= 11-20210123-1ubuntu1), libglib2.0-0 (= 2.66.4-1), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgnutls30 (= 3.7.0-5ubuntu1), libgomp1 (= 11-20210123-1ubuntu1), libgpg-error0 (= 1.38-2), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.18.3-4), libgssapi3-heimdal (= 7.7.0+dfsg-2), libharfbuzz0b (= 2.6.7-1ubuntu1), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.7-2), libhttp-date-perl (= 6.05-1), libhttp-message-perl (= 6.27-1), libhx509-5-heimdal (= 7.7.0+dfsg-2), libice6 (= 2:1.0.10-1), libicu-dev (= 67.1-5), libicu67 (= 67.1-5), libidn2-0 (= 2.3.0-5), libio-html-perl (= 1.001-1.1), libisl23 (= 0.23-1), libjbig0 (= 2.1-3.1build1), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.0.3-0ubuntu2), libjpeg-turbo8-dev (= 2.0.3-0ubuntu2), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), liblapack-dev (= 3.9.0-3ubuntu1), liblapack3 (= 3.9.0-3ubuntu1), libldap-2.4-2 (= 2.4.56+dfsg-1ubuntu2), liblwp-mediatypes-perl (= 6.04-1), liblz4-1 (= 1.9.3-0ubuntu1), liblzma-dev (= 5.2.4-1ubuntu1), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmodule-implementation-perl (= 0.09-1.1), libmodule-runtime-conflicts-perl (= 0.003-1.1), libmodule-runtime-perl (= 0.016-1), libmoose-perl (= 2.2014-2), libmount1 (= 2.36.1-1ubuntu2), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libmro-compat-perl (= 0.13-1), libnamespace-clean-perl (= 0.27-1), libncurses-dev (= 6.2+20201114-2), libncurses5-dev (= 6.2+20201114-2), libncurses6 (= 6.2+20201114-2), libncursesw6 (= 6.2+20201114-2), libnettle8 (= 3.7-2), libnghttp2-14 (= 1.42.0-1), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libp11-kit0 (= 0.23.22-1), libpackage-deprecationmanager-perl (= 0.17-1.1), libpackage-stash-perl (= 0.39-1), libpackage-stash-xs-perl (= 0.29-1build3), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpango-1.0-0 (= 1.48.0-1), libpangocairo-1.0-0 (= 1.48.0-1), libpangoft2-1.0-0 (= 1.48.0-1), libpaper-utils (= 1.1.28), libpaper1 (= 1.1.28), libparams-classify-perl (= 0.015-1build3), libparams-util-perl (= 1.102-1build1), libpcre16-3 (= 2:8.39-13), libpcre2-16-0 (= 10.35-2ubuntu1), libpcre2-32-0 (= 10.35-2ubuntu1), libpcre2-8-0 (= 10.35-2ubuntu1), libpcre2-dev (= 10.35-2ubuntu1), libpcre2-posix2 (= 10.35-2ubuntu1), libpcre3 (= 2:8.39-13), libpcre3-dev (= 2:8.39-13), libpcre32-3 (= 2:8.39-13), libpcrecpp0v5 (= 2:8.39-13), libperl5.32 (= 5.32.0-6), libpipeline1 (= 1.5.3-1), libpixman-1-0 (= 0.40.0-1), libpng-dev (= 1.6.37-3), libpng16-16 (= 1.6.37-3), libpsl5 (= 0.21.0-1.1ubuntu1), libreadline-dev (= 8.1-1), libreadline8 (= 8.1-1), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libseccomp2 (= 2.4.3-1ubuntu6), libselinux1 (= 3.1-2build2), libsigsegv2 (= 2.13-1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.36.1-1ubuntu2), libsqlite3-0 (= 3.34.0-1), libssh-4 (= 0.9.5-1), libssl1.1 (= 1.1.1f-1ubuntu5), libstdc++-10-dev (= 10.2.1-6ubuntu1), libstdc++-11-dev (= 11-20210123-1ubuntu1), libstdc++6 (= 11-20210123-1ubuntu1), libsub-exporter-perl (= 0.987-1), libsub-exporter-progressive-perl (= 0.001013-1), libsub-identify-perl (= 0.14-1build3), libsub-install-perl (= 0.928-1.1), libsub-name-perl (= 0.26-1build1), libsub-override-perl (= 0.09-2), libswitch-perl (= 2.17-2.1), libsystemd0 (= 247.1-4ubuntu1), libtasn1-6 (= 4.16.0-2), libtcl8.6 (= 8.6.11+dfsg-1), libthai-data (= 0.1.28-3), libthai0 (= 0.1.28-3), libtiff5 (= 4.1.0+git201212-1ubuntu1), libtimedate-perl (= 2.3300-1), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtk8.6 (= 8.6.11-2), libtool (= 2.4.6-15), libtry-tiny-perl (= 0.30-1), libubsan1 (= 11-20210123-1ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 247.1-4ubuntu1), libunistring2 (= 0.9.10-4), liburi-perl (= 5.05-1), libuuid1 (= 2.36.1-1ubuntu2), libvariable-magic-perl (= 0.62-1build3), libwebp6 (= 0.6.1-2), libwind0-heimdal (= 7.7.0+dfsg-2), libwww-curl-perl (= 4.17-7build1), libwww-curl-simple-perl (= 0.100191-2), libx11-6 (= 2:1.7.0-2), libx11-data (= 2:1.7.0-2), libxau6 (= 1:1.0.9-0ubuntu1), libxcb-render0 (= 1.14-2.1), libxcb-shm0 (= 1.14-2.1), libxcb1 (= 1.14-2.1), libxdmcp6 (= 1:1.1.3-0ubuntu1), libxext6 (= 2:1.3.4-0ubuntu1), libxft2 (= 2.3.3-0ubuntu1), libxml2 (= 2.9.10+dfsg-6.3build1), libxmuu1 (= 2:1.1.3-0ubuntu1), libxrender1 (= 1:0.9.10-1), libxss1 (= 1:1.2.3-1), libxt6 (= 1:1.2.0-1), libzstd1 (= 1.4.8+dfsg-1), linux-libc-dev (= 5.8.0-36.40+21.04.1), login (= 1:4.8.1-1ubuntu8), lsb-base (= 11.1.0ubuntu2), lto-disabled-list (= 1), m4 (= 1.4.18-5), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), openssl (= 1.1.1f-1ubuntu5), patch (= 2.7.6-7), perl (= 5.32.0-6), perl-base (= 5.32.0-6), perl-modules-5.32 (= 5.32.0-6), pkg-config (= 0.29.2-1ubuntu1), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.0.3-1), r-base-dev (= 4.0.3-1), r-bioc-biocgenerics (= 0.34.0-1build1), r-bioc-biocparallel (= 1.22.0-2), r-bioc-biostrings (= 2.56.0-1), r-bioc-genomeinfodb (= 1.24.2-1), r-bioc-genomeinfodbdata (= 1.2.4-1), r-bioc-genomicranges (= 1.40.0+dfsg-1build1), r-bioc-iranges (= 2.22.2-1build1), r-bioc-rhtslib (= 1.20.0+dfsg-1build1), r-bioc-rsamtools (= 2.4.0-1build1), r-bioc-s4vectors (= 0.26.1-1build1), r-bioc-xvector (= 0.28.0-1), r-bioc-zlibbioc (= 1.34.0+dfsg-1build1), r-cran-bh (= 1.74.0-1), r-cran-bitops (= 1.0-6-5), r-cran-crayon (= 1.3.4-5), r-cran-formatr (= 1.7-2build1), r-cran-futile.logger (= 1.4.3-4build1), r-cran-futile.options (= 1.0.1-3build1), r-cran-lambda.r (= 1.2.4-2build1), r-cran-rcurl (= 1.98-1.2-1build1), r-cran-snow (= 1:0.4.3-2), readline-common (= 8.1-1), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.32+dfsg-1), tzdata (= 2021a-1ubuntu1), ucf (= 3.0043), unzip (= 6.0-26ubuntu1), util-linux (= 2.36.1-1ubuntu2), x11-common (= 1:7.7+19ubuntu15), xauth (= 1:1.1-1), xdg-utils (= 1.1.3-2ubuntu2), xz-utils (= 5.2.4-1ubuntu1), zip (= 3.0-11build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1590905166" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-bitseq_1.32.0+dfsg-1build1_armhf.deb ------------------------------------------- new Debian package, version 2.0. size 1083720 bytes: control archive=1976 bytes. 1357 bytes, 23 lines control 2861 bytes, 36 lines md5sums Package: r-bioc-bitseq Version: 1.32.0+dfsg-1build1 Architecture: armhf Maintainer: Ubuntu Developers Installed-Size: 5607 Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-api-bioc-3.11, r-bioc-rsamtools (>= 1.99.3), r-bioc-s4vectors, r-bioc-iranges, r-bioc-rhtslib (>= 1.15.5), libc6 (>= 2.29), libcurl4 (>= 7.18.0), libgcc-s1 (>= 3.5), libgomp1 (>= 6), libstdc++6 (>= 11) Suggests: r-bioc-edger, r-bioc-deseq, r-bioc-biocstyle Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/BitSeq/ Description: transcript expression inference and analysis for RNA-seq data The BitSeq package is targeted for transcript expression analysis and differential expression analysis of RNA-seq data in two stage process. In the first stage it uses Bayesian inference methodology to infer expression of individual transcripts from individual RNA-seq experiments. The second stage of BitSeq embraces the differential expression analysis of transcript expression. Providing expression estimates from replicates of multiple conditions, Log-Normal model of the estimates is used for inferring the condition mean transcript expression and ranking the transcripts based on the likelihood of differential expression. Original-Maintainer: Debian R Packages Maintainers drwxr-xr-x root/root 0 2020-05-31 06:06 ./ drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/ drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/ drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/ drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/ -rw-r--r-- root/root 697 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/CITATION -rw-r--r-- root/root 1722 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/DESCRIPTION -rw-r--r-- root/root 1159 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/INDEX drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/Meta/ -rw-r--r-- root/root 851 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/Meta/Rd.rds -rw-r--r-- root/root 122 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/Meta/features.rds -rw-r--r-- root/root 907 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/Meta/hsearch.rds -rw-r--r-- root/root 380 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/Meta/links.rds -rw-r--r-- root/root 371 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/Meta/nsInfo.rds -rw-r--r-- root/root 1304 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/Meta/package.rds -rw-r--r-- root/root 238 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/Meta/vignette.rds -rw-r--r-- root/root 383 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/NAMESPACE -rw-r--r-- root/root 4127 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/NEWS drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/R/ -rw-r--r-- root/root 1058 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/R/BitSeq -rw-r--r-- root/root 40891 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/R/BitSeq.rdb -rw-r--r-- root/root 643 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/R/BitSeq.rdx drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/doc/ -rw-r--r-- root/root 6584 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/doc/BitSeq.R -rw-r--r-- root/root 17960 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/doc/BitSeq.Rnw -rw-r--r-- root/root 215847 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/doc/BitSeq.pdf -rw-r--r-- root/root 1316 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/doc/index.html drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/extdata/ -rw-r--r-- root/root 4070127 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/extdata/data-c0b0.sam -rw-r--r-- root/root 176210 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/extdata/data-c0b1.rpkm -rw-r--r-- root/root 176210 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/extdata/data-c1b0.rpkm -rw-r--r-- root/root 176210 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/extdata/data-c1b1.rpkm -rw-r--r-- root/root 87197 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/extdata/ensSelect1.fasta -rw-r--r-- root/root 2009 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/extdata/ensSelect1.tr -rw-r--r-- root/root 636 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/extdata/parameters1.txt drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/help/ -rw-r--r-- root/root 655 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/help/AnIndex -rw-r--r-- root/root 42266 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/help/BitSeq.rdb -rw-r--r-- root/root 477 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/help/BitSeq.rdx -rw-r--r-- root/root 297 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/help/aliases.rds -rw-r--r-- root/root 280 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/help/paths.rds drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/html/ -rw-r--r-- root/root 4296 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/html/00Index.html -rw-r--r-- root/root 1335 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/html/R.css drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/libs/ -rw-r--r-- root/root 658304 2020-05-31 06:06 ./usr/lib/R/site-library/BitSeq/libs/BitSeq.so drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/share/ drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/share/doc/r-bioc-bitseq/ -rw-r--r-- root/root 592 2020-05-31 06:06 ./usr/share/doc/r-bioc-bitseq/changelog.Debian.gz -rw-r--r-- root/root 10115 2020-05-20 09:36 ./usr/share/doc/r-bioc-bitseq/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 444 Distribution: hirsute Host Architecture: armhf Install-Time: 90 Job: r-bioc-bitseq_1.32.0+dfsg-1build1.dsc Machine Architecture: arm64 Package: r-bioc-bitseq Package-Time: 536 Source-Version: 1.32.0+dfsg-1build1 Space: n/a Status: successful Version: 1.32.0+dfsg-1build1 -------------------------------------------------------------------------------- Finished at 2021-02-06T15:41:34Z Build needed 00:08:56, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20672233 Scanning for processes to kill in build PACKAGEBUILD-20672233