https://launchpad.net/ubuntu/+archive/test-rebuild-20220617-kinetic/+build/24028854 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-009 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_215~563~ubuntu20.04.1 python3-lpbuildd_215~563~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.4 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 23 Jun 00:20:32 ntpdate[1829]: adjust time server 10.211.37.1 offset -0.000523 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24028854 --image-type chroot /home/buildd/filecache-default/4d18961cd05542d5def75b14497015b674c37821 Creating target for build PACKAGEBUILD-24028854 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24028854 Starting target for build PACKAGEBUILD-24028854 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24028854 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic main' 'deb http://ftpmaster.internal/ubuntu kinetic main universe' Overriding sources.list in build-PACKAGEBUILD-24028854 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24028854 Adding trusted keys to build-PACKAGEBUILD-24028854 pub rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC] Key fingerprint = 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid Launchpad Toolchain builds RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24028854 Updating target for build PACKAGEBUILD-24028854 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic InRelease [23.8 kB] Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 Packages [9632 B] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main Translation-en [4132 B] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 Packages [1398 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe amd64 Packages [13.9 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5729 kB] Fetched 21.9 MB in 5s (4331 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libgprofng0 util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp-11 dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gcc-12-base init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libkeyutils1 liblsan0 liblzma5 libmount1 libncurses6 libncursesw6 libpng16-16 libquadmath0 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils 83 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 79.7 MB of archives. After this operation, 5304 kB of additional disk space will be used. Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf0 amd64 2.38.50.20220615-4ubuntu1 [103 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 base-files amd64 12.2ubuntu1 [62.6 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdutils amd64 1:2.38-4ubuntu1 [80.7 kB] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf-nobfd0 amd64 2.38.50.20220615-4ubuntu1 [107 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [270 kB] Get:6 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-x86-64-linux-gnu amd64 2.38.50.20220615-4ubuntu1 [2476 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libatomic1 amd64 12.1.0-2ubuntu1 [10.4 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 libubsan1 amd64 12.1.0-2ubuntu1 [969 kB] Get:9 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libbinutils amd64 2.38.50.20220615-4ubuntu1 [655 kB] Get:10 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils amd64 2.38.50.20220615-4ubuntu1 [3292 B] Get:11 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-common amd64 2.38.50.20220615-4ubuntu1 [224 kB] Get:12 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libgprofng0 amd64 2.38.50.20220615-4ubuntu1 [963 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 libquadmath0 amd64 12.1.0-2ubuntu1 [152 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblsan0 amd64 12.1.0-2ubuntu1 [1060 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 libitm1 amd64 12.1.0-2ubuntu1 [29.5 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgomp1 amd64 12.1.0-2ubuntu1 [125 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-12-base amd64 12.1.0-2ubuntu1 [18.8 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-s1 amd64 12.1.0-2ubuntu1 [54.2 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcc1-0 amd64 12.1.0-2ubuntu1 [46.6 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++6 amd64 12.1.0-2ubuntu1 [679 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgpg-error0 amd64 1.45-2 [69.0 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcrypt20 amd64 1.10.1-2ubuntu1 [524 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma5 amd64 5.2.5-2.1 [99.2 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd-sysv amd64 249.11-0ubuntu4 [10.2 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapparmor1 amd64 3.0.4-2ubuntu3 [38.0 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgnutls30 amd64 3.7.6-2ubuntu1 [968 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 libip4tc2 amd64 1.8.7-1ubuntu6 [19.7 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblkid1 amd64 2.38-4ubuntu1 [103 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 libselinux1 amd64 3.4-1 [77.6 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmount1 amd64 2.38-4ubuntu1 [121 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsmartcols1 amd64 2.38-4ubuntu1 [50.8 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main amd64 login amd64 1:4.11.1+dfsg1-2ubuntu1 [183 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux-extra amd64 2.38-4ubuntu1 [83.8 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux amd64 2.38-4ubuntu1 [1069 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 mount amd64 2.38-4ubuntu1 [114 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage-common all 3.4-1 [9828 B] Get:37 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsepol2 amd64 3.4-2 [294 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage2 amd64 3.4-1 [91.8 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 passwd amd64 1:4.11.1+dfsg1-2ubuntu1 [765 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 adduser all 3.121ubuntu1 [150 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd amd64 249.11-0ubuntu4 [4517 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsystemd0 amd64 249.11-0ubuntu4 [314 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 libudev1 amd64 249.11-0ubuntu4 [76.1 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapt-pkg6.0 amd64 2.5.0 [896 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg amd64 1.21.8ubuntu1 [1333 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-bin amd64 6.3+20220423-2 [183 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 init-system-helpers all 1.63 [38.7 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 apt amd64 2.5.0 [1370 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 logsave amd64 1.46.5-2ubuntu2 [9914 B] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 libext2fs2 amd64 1.46.5-2ubuntu2 [205 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 e2fsprogs amd64 1.46.5-2ubuntu2 [585 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 init amd64 1.63 [5674 B] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcap-ng0 amd64 0.7.9-4 [12.1 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.9 [717 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses6 amd64 6.3+20220423-2 [110 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncursesw6 amd64 6.3+20220423-2 [146 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtinfo6 amd64 6.3+20220423-2 [99.6 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuuid1 amd64 2.38-4ubuntu1 [23.2 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcom-err2 amd64 1.46.5-2ubuntu2 [9074 B] Get:61 http://ftpmaster.internal/ubuntu kinetic/main amd64 libss2 amd64 1.46.5-2ubuntu2 [12.3 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 mawk amd64 1.3.4.20200120-3.1 [109 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkeyutils1 amd64 1.6.1-3ubuntu1 [10.1 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 readline-common all 8.1.2-1.2 [53.6 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main amd64 libreadline8 amd64 8.1.2-1.2 [153 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsqlite3-0 amd64 3.38.5-1 [646 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main amd64 libssl3 amd64 3.0.3-5ubuntu3 [1897 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main amd64 openssl amd64 3.0.3-5ubuntu3 [1175 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpng16-16 amd64 1.6.37-5 [187 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main amd64 xz-utils amd64 5.2.5-2.1 [83.8 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main amd64 g++-11 amd64 11.3.0-3ubuntu1 [11.3 MB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++-11-dev amd64 11.3.0-3ubuntu1 [2074 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main amd64 libasan6 amd64 11.3.0-3ubuntu1 [2265 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11 amd64 11.3.0-3ubuntu1 [20.0 MB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-11-dev amd64 11.3.0-3ubuntu1 [2484 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtsan0 amd64 11.3.0-3ubuntu1 [2241 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main amd64 cpp-11 amd64 11.3.0-3ubuntu1 [9910 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11-base amd64 11.3.0-3ubuntu1 [20.8 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg-dev all 1.21.8ubuntu1 [1069 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdpkg-perl all 1.21.8ubuntu1 [237 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 lto-disabled-list all 27 [12.4 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfakeroot amd64 1.29-1ubuntu1 [31.1 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 fakeroot amd64 1.29-1ubuntu1 [60.0 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 pinentry-curses amd64 1.2.0-1ubuntu1 [34.5 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.7 MB in 3s (29.9 MB/s) (Reading database ... 13449 files 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24028854 amd64 kinetic -c chroot:build-PACKAGEBUILD-24028854 --arch=amd64 --dist=kinetic --nolog -A libpwiz_3.0.18342-4build1.dsc Initiating build PACKAGEBUILD-24028854 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lgw01-amd64-009.buildd +==============================================================================+ | libpwiz 3.0.18342-4build1 (amd64) Thu, 23 Jun 2022 00:21:03 +0000 | +==============================================================================+ Package: libpwiz Version: 3.0.18342-4build1 Source Version: 3.0.18342-4build1 Distribution: kinetic Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24028854/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libpwiz-MlaSk2/resolver-2uuybc' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libpwiz_3.0.18342-4build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libpwiz-MlaSk2/libpwiz-3.0.18342' with '<>' I: NOTICE: Log filtering will replace 'build/libpwiz-MlaSk2' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), dpkg-dev (>= 1.16.1~), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.62.0), libboost-date-time-dev (>= 1.62.0), libboost-iostreams-dev (>= 1.62.0), libboost-regex-dev (>= 1.62.0), libboost-filesystem-dev (>= 1.62.0), libboost-thread-dev (>= 1.62.0), libboost-system-dev (>= 1.62.0), libboost-chrono-dev (>= 1.62.0), libboost-dev (>= 1.62.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), dpkg-dev (>= 1.16.1~), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.62.0), libboost-date-time-dev (>= 1.62.0), libboost-iostreams-dev (>= 1.62.0), libboost-regex-dev (>= 1.62.0), libboost-filesystem-dev (>= 1.62.0), libboost-thread-dev (>= 1.62.0), libboost-system-dev (>= 1.62.0), libboost-chrono-dev (>= 1.62.0), libboost-dev (>= 1.62.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [524 B] Get:5 copy:/<>/apt_archive ./ Packages [608 B] Fetched 2095 B in 0s (108 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper debugedit dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man doxygen dwz file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.74-dev libboost-atomic1.74.0 libboost-chrono-dev libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-program-options-dev libboost-program-options1.74-dev libboost-program-options1.74.0 libboost-regex-dev libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev libboost-system1.74.0 libboost-thread-dev libboost-thread1.74-dev libboost-thread1.74.0 libboost-tools-dev libboost1.74-dev libboost1.74-tools-dev libbrotli-dev libbrotli1 libbsd0 libclang-cpp14 libclang1-14 libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libedit2 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig-dev libfontconfig1 libfreetype-dev libfreetype6 libfreetype6-dev libgd-dev libgd3 libglib2.0-0 libice-dev libice6 libicu-dev libicu71 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libllvm14 liblzma-dev libmagic-mgc libmagic1 libmd0 libosp5 libpipeline1 libpng-dev libpthread-stubs0-dev libsigsegv2 libsm-dev libsm6 libsub-override-perl libtiff-dev libtiff5 libtiffxx5 libtool libuchardet0 libvpx-dev libvpx7 libwebp7 libx11-6 libx11-data libx11-dev libxapian30 libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxpm-dev libxpm4 libxt-dev libxt6 m4 man-db opensp pkg-config po-debconf sgml-base sgml-data ucf uuid-dev x11-common x11proto-dev xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make docbook-defguide docbook-dsssl docbook-xml psgml doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.74-doc libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev xsltproc docbook-xsl default-jdk fop libeigen3-doc libfftw3-doc freetype2-doc libgd-tools libice-doc icu-doc liblzma-doc libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc xapian-tools libxcb-doc libxt-doc m4-doc apparmor less www-browser doc-base libmail-box-perl sgml-base-doc perlsgml w3-recs libxml2-utils Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libpng-tools libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper debugedit dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man doxygen dwz file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.74-dev libboost-atomic1.74.0 libboost-chrono-dev libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-program-options-dev libboost-program-options1.74-dev libboost-program-options1.74.0 libboost-regex-dev libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev libboost-system1.74.0 libboost-thread-dev libboost-thread1.74-dev libboost-thread1.74.0 libboost-tools-dev libboost1.74-dev libboost1.74-tools-dev libbrotli-dev libbrotli1 libbsd0 libclang-cpp14 libclang1-14 libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libedit2 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig-dev libfontconfig1 libfreetype-dev libfreetype6 libfreetype6-dev libgd-dev libgd3 libglib2.0-0 libice-dev libice6 libicu-dev libicu71 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libllvm14 liblzma-dev libmagic-mgc libmagic1 libmd0 libosp5 libpipeline1 libpng-dev libpthread-stubs0-dev libsigsegv2 libsm-dev libsm6 libsub-override-perl libtiff-dev libtiff5 libtiffxx5 libtool libuchardet0 libvpx-dev libvpx7 libwebp7 libx11-6 libx11-data libx11-dev libxapian30 libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxpm-dev libxpm4 libxt-dev libxt6 m4 man-db opensp pkg-config po-debconf sbuild-build-depends-main-dummy sgml-base sgml-data ucf uuid-dev x11-common x11proto-dev xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 148 newly installed, 0 to remove and 0 not upgraded. Need to get 115 MB of archives. After this operation, 619 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [832 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 sgml-base all 1.30 [12.5 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmd0 amd64 1.0.4-1build1 [23.0 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main amd64 libbsd0 amd64 0.11.6-1 [44.5 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 libelf1 amd64 0.187-1 [51.3 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main amd64 libexpat1 amd64 2.4.8-1 [90.6 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libglib2.0-0 amd64 2.72.2-2 [1435 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 libicu71 amd64 71.1-3 [10.6 MB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxml2 amd64 2.9.14+dfsg-1 [756 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 ucf all 3.0043 [56.1 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdextrautils amd64 2.38-4ubuntu1 [71.1 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic-mgc amd64 1:5.41-4 [257 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic1 amd64 1:5.41-4 [87.3 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 file amd64 1:5.41-4 [21.5 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 gettext-base amd64 0.21-6 [37.9 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuchardet0 amd64 0.0.7-1build2 [76.9 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 groff-base amd64 1.22.4-8build1 [955 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 libedit2 amd64 3.1-20210910-1build1 [96.8 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpipeline1 amd64 1.5.6-1 [23.1 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxau6 amd64 1:1.0.9-1build5 [7634 B] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu5 [10.9 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb1 amd64 1.14-3ubuntu3 [49.0 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 libx11-data all 2:1.7.5-1 [119 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libx11-6 amd64 2:1.7.5-1 [666 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 man-db amd64 2.10.2-1 [1187 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsigsegv2 amd64 2.13-1ubuntu3 [14.6 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 m4 amd64 1.4.18-5ubuntu2 [199 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 autoconf all 2.71-2 [338 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 automake all 1:1.16.5-1.3 [558 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 autopoint all 0.21-6 [421 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/universe amd64 chrpath amd64 0.16-2 [13.2 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdebhelper-perl all 13.7.1ubuntu1 [66.9 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtool all 2.4.7-4 [166 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 dh-autoreconf all 20 [16.1 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-override-perl all 0.09-3 [9756 B] Get:38 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdw1 amd64 0.187-1 [247 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 debugedit amd64 1:5.0-4build1 [47.2 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 dwz amd64 0.14-1build2 [105 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 gettext amd64 0.21-6 [862 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 debhelper all 13.7.1ubuntu1 [940 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 xml-core all 0.18+nmu1 [21.6 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 sgml-data all 2.0.11+nmu1 [171 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/universe amd64 docbook all 4.5-10 [120 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libosp5 amd64 1.5.2-13ubuntu3 [652 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/universe amd64 opensp amd64 1.5.2-13ubuntu3 [145 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/universe amd64 docbook-to-man amd64 1:2.0.0-45 [74.3 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 libllvm14 amd64 1:14.0.5-1 [23.8 MB] Get:54 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libclang-cpp14 amd64 1:14.0.5-1 [12.0 MB] Get:55 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libclang1-14 amd64 1:14.0.5-1 [6777 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libxapian30 amd64 1.4.18-4 [701 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/universe amd64 doxygen amd64 1.9.1-2ubuntu2 [4620 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 fontconfig-config all 2.13.1-4.4ubuntu1 [28.2 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 icu-devtools amd64 71.1-3 [201 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost1.74-dev amd64 1.74.0-14ubuntu4 [9616 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-atomic1.74.0 amd64 1.74.0-14ubuntu4 [224 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-atomic1.74-dev amd64 1.74.0-14ubuntu4 [221 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-chrono1.74.0 amd64 1.74.0-14ubuntu4 [232 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-chrono1.74-dev amd64 1.74.0-14ubuntu4 [239 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libboost-chrono-dev amd64 1.74.0.3ubuntu7 [3854 B] Get:67 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-date-time1.74.0 amd64 1.74.0-14ubuntu4 [221 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-serialization1.74.0 amd64 1.74.0-14ubuntu4 [327 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-serialization1.74-dev amd64 1.74.0-14ubuntu4 [375 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-date-time1.74-dev amd64 1.74.0-14ubuntu4 [226 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libboost-date-time-dev amd64 1.74.0.3ubuntu7 [3248 B] Get:72 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-dev amd64 1.74.0.3ubuntu7 [3490 B] Get:73 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-14ubuntu4 [264 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-system1.74.0 amd64 1.74.0-14ubuntu4 [221 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-system1.74-dev amd64 1.74.0-14ubuntu4 [218 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-filesystem1.74-dev amd64 1.74.0-14ubuntu4 [287 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-filesystem-dev amd64 1.74.0.3ubuntu7 [3280 B] Get:78 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-regex1.74.0 amd64 1.74.0-14ubuntu4 [511 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 libicu-dev amd64 71.1-3 [11.6 MB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-regex1.74-dev amd64 1.74.0-14ubuntu4 [596 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-iostreams1.74.0 amd64 1.74.0-14ubuntu4 [245 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libboost-iostreams1.74-dev amd64 1.74.0-14ubuntu4 [252 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libboost-iostreams-dev amd64 1.74.0.3ubuntu7 [3238 B] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-program-options1.74.0 amd64 1.74.0-14ubuntu4 [311 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-program-options1.74-dev amd64 1.74.0-14ubuntu4 [380 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-program-options-dev amd64 1.74.0.3ubuntu7 [3266 B] Get:87 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-regex-dev amd64 1.74.0.3ubuntu7 [3510 B] Get:88 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-system-dev amd64 1.74.0.3ubuntu7 [3390 B] Get:89 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-thread1.74.0 amd64 1.74.0-14ubuntu4 [262 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-thread1.74-dev amd64 1.74.0-14ubuntu4 [272 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-thread-dev amd64 1.74.0.3ubuntu7 [3266 B] Get:92 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost1.74-tools-dev amd64 1.74.0-14ubuntu4 [1351 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libboost-tools-dev amd64 1.74.0.3ubuntu7 [3428 B] Get:94 http://ftpmaster.internal/ubuntu kinetic/main amd64 libbrotli1 amd64 1.0.9-2build6 [315 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic/main amd64 libbrotli-dev amd64 1.0.9-2build6 [337 kB] Get:96 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdeflate0 amd64 1.10-2 [70.9 kB] Get:97 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdeflate-dev amd64 1.10-2 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amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu9 [164 kB] Get:108 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpng-dev amd64 1.6.37-5 [186 kB] Get:109 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfreetype-dev amd64 2.12.1+dfsg-3 [561 kB] Get:110 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfreetype6-dev amd64 2.12.1+dfsg-3 [8270 B] Get:111 http://ftpmaster.internal/ubuntu kinetic/main amd64 uuid-dev amd64 2.38-4ubuntu1 [32.5 kB] Get:112 http://ftpmaster.internal/ubuntu kinetic/main amd64 pkg-config amd64 0.29.2-1ubuntu3 [48.2 kB] Get:113 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfontconfig-dev amd64 2.13.1-4.4ubuntu1 [149 kB] Get:114 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg-turbo8 amd64 2.1.2-0ubuntu1 [134 kB] Get:115 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg8 amd64 8c-2ubuntu10 [2264 B] Get:116 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjbig0 amd64 2.1-3.1build3 [28.9 kB] Get:117 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Get:137 http://ftpmaster.internal/ubuntu kinetic/main amd64 libice-dev amd64 2:1.0.10-1build2 [51.4 kB] Get:138 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsm-dev amd64 2:1.2.3-1build2 [18.1 kB] Get:139 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxt-dev amd64 1:1.2.1-1 [396 kB] Get:140 http://ftpmaster.internal/ubuntu kinetic/main amd64 libvpx7 amd64 1.11.0-2ubuntu2 [1078 kB] Get:141 http://ftpmaster.internal/ubuntu kinetic/main amd64 libvpx-dev amd64 1.11.0-2ubuntu2 [1251 kB] Get:142 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjbig-dev amd64 2.1-3.1build3 [27.3 kB] Get:143 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma-dev amd64 5.2.5-2.1 [157 kB] Get:144 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtiffxx5 amd64 4.4.0~rc1-1 [5696 B] Get:145 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtiff-dev amd64 4.4.0~rc1-1 [314 kB] Get:146 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgd-dev amd64 2.3.0-2ubuntu2 [260 kB] Get:147 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [321 kB] Get:148 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libeigen3-dev all 3.4.0-2ubuntu2 [1056 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 115 MB in 4s (26.8 MB/s) Selecting previously unselected package sgml-base. 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Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.38.50.20220615-4ubuntu1 dpkg-dev_1.21.8ubuntu1 g++-11_11.3.0-3ubuntu1 gcc-11_11.3.0-3ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-2ubuntu1 linux-libc-dev_5.15.0-27.28 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu1 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libjpeg8-dev_8c-2ubuntu10 libjs-jquery_3.6.0+dfsg+~3.5.13-1 libjson-c5_0.16-1 libk5crypto3_1.19.2-2 libkeyutils1_1.6.1-3ubuntu1 libkmod2_29-1ubuntu1 libkrb5-3_1.19.2-2 libkrb5support0_1.19.2-2 libllvm14_1:14.0.5-1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_12.1.0-2ubuntu1 liblz4-1_1.9.3-2build2 liblzma-dev_5.2.5-2.1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-1build1 libmount1_2.38-4ubuntu1 libmpc3_1.2.1-2build1 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.7.3-1build2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libosp5_1.5.2-13ubuntu3 libp11-kit0_0.24.1-1 libpam-modules_1.4.0-13ubuntu1 libpam-modules-bin_1.4.0-13ubuntu1 libpam-runtime_1.4.0-13ubuntu1 libpam0g_1.4.0-13ubuntu1 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-3ubuntu1 libpipeline1_1.5.6-1 libpng-dev_1.6.37-5 libpng16-16_1.6.37-5 libprocps8_2:3.3.17-6ubuntu2 libpthread-stubs0-dev_0.4-1build2 libquadmath0_12.1.0-2ubuntu1 libreadline8_8.1.2-1.2 libseccomp2_2.5.4-1ubuntu1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol2_3.4-2 libsigsegv2_2.13-1ubuntu3 libsm-dev_2:1.2.3-1build2 libsm6_2:1.2.3-1build2 libsmartcols1_2.38-4ubuntu1 libsqlite3-0_3.38.5-1 libss2_1.46.5-2ubuntu2 libssl3_3.0.3-5ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-2ubuntu1 libsub-override-perl_0.09-3 libsystemd0_249.11-0ubuntu4 libtasn1-6_4.18.0-4build1 libtiff-dev_4.4.0~rc1-1 libtiff5_4.4.0~rc1-1 libtiffxx5_4.4.0~rc1-1 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2build1 libtirpc-dev_1.3.2-2build1 libtirpc3_1.3.2-2build1 libtool_2.4.7-4 libtsan0_11.3.0-3ubuntu1 libubsan1_12.1.0-2ubuntu1 libuchardet0_0.0.7-1build2 libudev1_249.11-0ubuntu4 libunistring2_1.0-1 libuuid1_2.38-4ubuntu1 libvpx-dev_1.11.0-2ubuntu2 libvpx7_1.11.0-2ubuntu2 libwebp7_1.2.2-2 libx11-6_2:1.7.5-1 libx11-data_2:1.7.5-1 libx11-dev_2:1.7.5-1 libxapian30_1.4.18-4 libxau-dev_1:1.0.9-1build5 libxau6_1:1.0.9-1build5 libxcb1_1.14-3ubuntu3 libxcb1-dev_1.14-3ubuntu3 libxdmcp-dev_1:1.1.3-0ubuntu5 libxdmcp6_1:1.1.3-0ubuntu5 libxml2_2.9.14+dfsg-1 libxpm-dev_1:3.5.12-1build2 libxpm4_1:3.5.12-1build2 libxt-dev_1:1.2.1-1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.15.0-27.28 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.5-2ubuntu2 lsb-base_11.1.0ubuntu4 lto-disabled-list_27 m4_1.4.18-5ubuntu2 make_4.3-4.1build1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 opensp_1.5.2-13ubuntu3 openssl_3.0.3-5ubuntu3 optipng_0.7.7-2build1 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.34.0-3ubuntu1 perl-base_5.34.0-3ubuntu1 perl-modules-5.34_5.34.0-3ubuntu1 pinentry-curses_1.2.0-1ubuntu1 pkg-config_0.29.2-1ubuntu3 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-6ubuntu2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 sgml-base_1.30 sgml-data_2.0.11+nmu1 systemd_249.11-0ubuntu4 systemd-sysv_249.11-0ubuntu4 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 uuid-dev_2.38-4ubuntu1 x11-common_1:7.7+23ubuntu2 x11proto-dev_2022.1-1 xml-core_0.18+nmu1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu9 zlib1g-dev_1:1.2.11.dfsg-2ubuntu9 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libpwiz Binary: libpwiz-dev, libpwiz3, libpwiz-tools, libpwiz-doc Architecture: any all Version: 3.0.18342-4build1 Maintainer: The Debichem Group Uploaders: Filippo Rusconi Homepage: http://proteowizard.sourceforge.net/downloads.shtml Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/debichem-team/libpwiz Vcs-Git: https://salsa.debian.org/debichem-team/libpwiz.git Build-Depends: debhelper-compat (= 12), dpkg-dev (>= 1.16.1~), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.62.0), libboost-date-time-dev (>= 1.62.0), libboost-iostreams-dev (>= 1.62.0), libboost-regex-dev (>= 1.62.0), libboost-filesystem-dev (>= 1.62.0), libboost-thread-dev (>= 1.62.0), libboost-system-dev (>= 1.62.0), libboost-chrono-dev (>= 1.62.0), libboost-dev (>= 1.62.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev Package-List: libpwiz-dev deb libdevel optional arch=any libpwiz-doc deb doc optional arch=all libpwiz-tools deb science optional arch=any libpwiz3 deb libs optional arch=any Checksums-Sha1: d653a9eefc8b97ba6c2a0a57ef2235dab10d7e7d 3196944 libpwiz_3.0.18342.orig.tar.gz 00a0113328d94fb0ab05e37ecece35a3417729de 20076 libpwiz_3.0.18342-4build1.debian.tar.xz Checksums-Sha256: c43f94529fd4de8e6928befbd522308a6a965fef8970e6bc84613aa0a1338c98 3196944 libpwiz_3.0.18342.orig.tar.gz fe5968dbffd2fe437ee95b2af13a6c341d50e8967dbb6df04c89bb44ea7f899c 20076 libpwiz_3.0.18342-4build1.debian.tar.xz Files: 7b23d6a4f20bc577f23fa74880729e2d 3196944 libpwiz_3.0.18342.orig.tar.gz 3aab92223ab29923b1fc5fa58f848d78 20076 libpwiz_3.0.18342-4build1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAuFiEE1WVxuIqLuvFAv2PWvX6qYHePpvUFAl/UtPcQHGRva29AdWJ1 bnR1LmNvbQAKCRC9fqpgd4+m9aiMD/9p0jGRmWSHG2Ja7FvE4sDm1eWfgjD3eENg VqKAwCOBMehxQ88/lP3bvqmBcHfxztDYkBgRGUqWtT6k8JK8Oacfg7z7ut370aQe otQ7Q44D6vCJBcI1VkuDwfcIQ2+6/ba8QD6xx9rUBHu5leEzbQK6gXBZvgyZiJlL u9VBzR9LiOuwAZUOkz62llyet6LZz0Z5il5ETN+s0n3e4KXqT3tebgk3dlMDooRX Pi5t3SMMbFE3Gj2wPIh3io3bRQ37xeSnqKl8AMRuv4jGHMBw5KXkRXRYKYDZjXMH rXx7kXY4VWUCK+yyVD3e0uvLshh0xU8z5cL0M81mn+AcsNoth3E+8RetVpRK6MP3 pg97H/scqbhgUVqSFJf4gSnrXigRj8fEm/lW/7OUQXGW//rJdk6JeUnSU32og4xw z7RMXhcUBIprgg6OoosHYtTmkwCZUwvupBjOgmZ3gVSif/Ht25MknfenR4F3CnKF LVDIAqaG8GC50F8/dTM08Sld6MOIVLhS8wKno3C3Od6iqL09j6/3R+ylsaHyoARc U28Puksenh+vV7ThSNsme8lW4SWz8VXi9ywtGxBdbqqUZhAlCyZmPYZykqHxZqsM EKz5h7XhOw07jlhr50t4cadkw4X96ly5D+XBL/W7SzrnPH9gWhk1OGbyWqIdPNyG KZU2rlN7Mg== =fg+E -----END PGP SIGNATURE----- gpgv: Signature made Sat Dec 12 12:17:59 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./libpwiz_3.0.18342-4build1.dsc dpkg-source: info: extracting libpwiz in /<> dpkg-source: info: unpacking libpwiz_3.0.18342.orig.tar.gz dpkg-source: info: unpacking libpwiz_3.0.18342-4build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-boost-fail-cast-tribool-to-bool-force-it.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24028854 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24028854 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24028854 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package libpwiz dpkg-buildpackage: info: source version 3.0.18342-4build1 dpkg-buildpackage: info: source distribution hirsute dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean "---------------------------------------" DEB_HOST_GNU_TYPE: x86_64-linux-gnu DEB_BUILD_GNU_TYPE x86_64-linux-gnu DEB_BUILD_OPTIONS: noautodbgsym parallel=4 DEB_HOST_MULTIARCH: x86_64-linux-gnu "---------------------------------------" entering the clean target dh_testdir dh_testroot rm -f debian/msconvert.1 rm -f debian/idconvert.1 rm -f debian/mscat.1 rm -f debian/txt2mzml.1 rm -f autools/conf.log autools/config.status rm -rf /<>/debian/build rm -rf debian/includes rm -rf doc/dox/html rm -f configure-stamp rm -f build-arch-stamp rm -f build-indep-stamp dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3.substvars debian/libpwiz-tools.substvars debian/libpwiz-doc.substvars debian/files rm -fr -- debian/libpwiz-dev/ debian/tmp/ debian/libpwiz3/ debian/libpwiz-tools/ debian/libpwiz-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build "---------------------------------------" DEB_HOST_GNU_TYPE: x86_64-linux-gnu DEB_BUILD_GNU_TYPE x86_64-linux-gnu DEB_BUILD_OPTIONS: noautodbgsym parallel=4 DEB_HOST_MULTIARCH: x86_64-linux-gnu "---------------------------------------" entering the configure target dh_testdir dh_prep -a rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3.substvars debian/libpwiz-tools.substvars rm -fr -- debian/.debhelper/generated/libpwiz-dev/ debian/libpwiz-dev/ debian/tmp/ debian/.debhelper/generated/libpwiz3/ debian/libpwiz3/ debian/.debhelper/generated/libpwiz-tools/ debian/libpwiz-tools/ mkdir -p /<>/debian/build cp -rpf autotools libraries pwiz pwiz_tools /<>/debian/build echo "BOOST_LDPATH = /usr/lib/x86_64-linux-gnu" > /<>/debian/build/autotools/Makefile.am-tmp cat /<>/debian/build/autotools/Makefile.am >> /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/usr/include/eigen3/Eigen"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/Eigen"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/libsvm-3.0"|' /<>/debian/build/autotools/Makefile.am-tmp mv /<>/debian/build/autotools/Makefile.am-tmp /<>/debian/build/autotools/Makefile.am rm -f /<>/debian/build/libraries/boost_aux/boost/interprocess/detail/* cd /<>/debian/build/autotools && autoreconf --force -i && cd .. && \ autotools/configure --prefix=/usr --build=x86_64-linux-gnu --host=x86_64-linux-gnu libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in '.'. libtoolize: copying file './libtool.m4' libtoolize: copying file './ltoptions.m4' libtoolize: copying file './ltsugar.m4' libtoolize: copying file './ltversion.m4' libtoolize: copying file './lt~obsolete.m4' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. configure.ac:11: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:11: You should run autoupdate. libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:11: the top level configure.ac:42: warning: The macro `BOOST_THREADS' is obsolete. configure.ac:42: You should run autoupdate. boost.m4:1306: BOOST_THREADS is expanded from... configure.ac:42: the top level configure.ac:11: installing './compile' configure.ac:6: installing './missing' Makefile.am: installing './depcomp' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to enable C11 features... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of x86_64-linux-gnu-gcc... gcc3 checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by x86_64-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-linux-gnu-nm -B checking the name lister (/usr/bin/x86_64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-linux-gnu-file... no checking for file... file checking for x86_64-linux-gnu-objdump... x86_64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-linux-gnu-ar... x86_64-linux-gnu-ar checking for archiver @FILE support... @ checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip checking for x86_64-linux-gnu-ranlib... x86_64-linux-gnu-ranlib checking command to parse /usr/bin/x86_64-linux-gnu-nm -B output from x86_64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-gcc static flag -static works... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) mawk checking for x86_64-linux-gnu-g++... x86_64-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking for x86_64-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of x86_64-linux-gnu-g++... gcc3 checking how to run the C++ preprocessor... x86_64-linux-gnu-g++ -E checking for ld used by x86_64-linux-gnu-g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-g++ static flag -static works... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for x86_64-linux-gnu-gcc... (cached) x86_64-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether x86_64-linux-gnu-gcc accepts -g... (cached) yes checking for x86_64-linux-gnu-gcc option to enable C11 features... (cached) none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of x86_64-linux-gnu-gcc... (cached) gcc3 checking for fcntl.h... yes checking for float.h... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for memory.h... yes checking for netinet/in.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/ioctl.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for int32_t... yes checking for int64_t... yes checking for off_t... yes checking for C/C++ restrict keyword... __restrict__ checking for size_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for ptrdiff_t... yes checking for error_at_line... yes checking for GNU libc compatible malloc... yes checking for alarm... yes checking for working mktime... yes checking for GNU libc compatible realloc... yes checking for atexit... yes checking for floor... no checking for memmove... yes checking for memset... yes checking for mkdir... yes checking for modf... yes checking for pow... no checking for sqrt... no checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for strtoul... yes checking for strtoull... yes checking for Boost headers version >= 1.43.0... yes checking for Boost's header version... 1_74 checking for the flags needed to use pthreads... conftest.cpp: In function 'int main()': conftest.cpp:62:22: warning: argument 1 null where non-null expected [-Wnonnull] 62 | pthread_attr_init(0); pthread_cleanup_push(0, 0); | ~~~~~~~~~~~~~~~~~^~~ In file included from conftest.cpp:57: /usr/include/pthread.h:285:12: note: in a call to function 'int pthread_attr_init(pthread_attr_t*)' declared 'nonnull' 285 | extern int pthread_attr_init (pthread_attr_t *__attr) __THROW __nonnull ((1)); | ^~~~~~~~~~~~~~~~~ conftest.cpp:63:19: warning: argument 1 null where non-null expected [-Wnonnull] 63 | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from conftest.cpp:57: /usr/include/pthread.h:202:12: note: in a call to function 'int pthread_create(pthread_t*, const pthread_attr_t*, void* (*)(void*), void*)' declared 'nonnull' 202 | extern int pthread_create (pthread_t *__restrict __newthread, | ^~~~~~~~~~~~~~ conftest.cpp:63:19: warning: argument 3 null where non-null expected [-Wnonnull] 63 | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from conftest.cpp:57: /usr/include/pthread.h:202:12: note: in a call to function 'int pthread_create(pthread_t*, const pthread_attr_t*, void* (*)(void*), void*)' declared 'nonnull' 202 | extern int pthread_create (pthread_t *__restrict __newthread, | ^~~~~~~~~~~~~~ -pthread checking for the toolset name used by Boost for x86_64-linux-gnu-g++... configure: WARNING: could not figure out which toolset name to use for x86_64-linux-gnu-g++ checking for boost/system/error_code.hpp... yes checking for the Boost system library... yes checking for boost/thread.hpp... yes checking for the Boost thread library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking for boost/filesystem/path.hpp... yes checking for the Boost filesystem library... (cached) yes checking for boost/regex.hpp... yes checking for the Boost regex library... (cached) yes checking for boost/archive/text_oarchive.hpp... yes checking for the Boost serialization library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking for boost/iostreams/device/file_descriptor.hpp... yes checking for the Boost iostreams library... (cached) yes checking for boost/date_time/posix_time/posix_time.hpp... yes checking for the Boost date_time library... (cached) yes checking for boost/program_options.hpp... yes checking for the Boost program_options library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking for boost/chrono.hpp... yes checking for the Boost chrono library... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands entering the configure-stamp target touch configure-stamp entering the build-arch-stamp target cd /<>/debian/build && \ VERBOSE=1 BOOST_LDPATH=/usr/lib/x86_64-linux-gnu /usr/bin/make && \ VERBOSE=1 DESTDIR=/<>/debian/build /usr/bin/make install make[1]: Entering directory '/<>/debian/build' depbase=`echo pwiz_tools/examples/txt2mzml.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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pwiz_tools/examples/txt2mzml.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/txt2mzml.o pwiz_tools/examples/txt2mzml.cpp &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo libraries/boost_aux/libs/nowide/src/iostream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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/<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF libraries/boost_aux/libs/nowide/src/.deps/iostream.Tpo -c libraries/boost_aux/libs/nowide/src/iostream.cpp -fPIC -DPIC -o libraries/boost_aux/libs/nowide/src/.libs/iostream.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-MP -MF pwiz/data/identdata/.deps/Version.Tpo -c pwiz/data/identdata/Version.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/Version.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 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-Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Version.lo -MD -MP -MF pwiz/data/identdata/.deps/Version.Tpo -c pwiz/data/identdata/Version.cpp -o pwiz/data/identdata/Version.o >/dev/null 2>&1 depbase=`echo pwiz/data/tradata/Reader.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 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pwiz/data/msdata/.libs/BinaryDataEncoder.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 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pwiz/analysis/spectrum_processing/.libs/SpectrumList_3D.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/RegionSlice.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionSlice.Tpo -c pwiz/analysis/passive/RegionSlice.cpp -o pwiz/analysis/passive/RegionSlice.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peptideid/PeptideIDMap.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideIDMap.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideIDMap.Tpo -c pwiz/analysis/peptideid/PeptideIDMap.cpp -o pwiz/analysis/peptideid/PeptideIDMap.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianEstimator.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/TruncatedLorentzianEstimator.o In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:30, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:43:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 43 | static std::auto_ptr create(); | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:27: pwiz/analysis/frequency/ParameterEstimator.hpp:49:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | static std::auto_ptr create(const Function& function, | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:62:15: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | PWIZ_API_DECL auto_ptr TruncatedLorentzianEstimator::create() | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::TruncatedLorentzianEstimator::create()’: pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:64:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 64 | return auto_ptr(new TruncatedLorentzianEstimatorImpl); | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp: In member function ‘virtual pwiz::frequency::TruncatedLorentzianParameters pwiz::frequency::TruncatedLorentzianEstimatorImpl::iteratedEstimate(const pwiz::data::FrequencyData&, const pwiz::frequency::TruncatedLorentzianParameters&, int) const’: pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:146:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 146 | auto_ptr pe = | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianEstimator.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp -o pwiz/analysis/frequency/TruncatedLorentzianEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorRecalculatorDefault.Tpo -c pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/PrecursorRecalculatorDefault.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorRecalculatorDefault.Tpo -c pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp -o pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.o >/dev/null 2>&1 depbase=`echo pwiz/utility/proteome/IPIFASTADatabase.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/proteome/IPIFASTADatabase.lo pwiz/utility/proteome/IPIFASTADatabase.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF pwiz/utility/proteome/.deps/IPIFASTADatabase.Tpo -c pwiz/utility/proteome/IPIFASTADatabase.cpp -fPIC -DPIC -o pwiz/utility/proteome/.libs/IPIFASTADatabase.o In file included from pwiz/utility/proteome/IPIFASTADatabase.cpp:26: pwiz/utility/proteome/IPIFASTADatabase.hpp:72:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from pwiz/utility/proteome/IPIFASTADatabase.hpp:29, from pwiz/utility/proteome/IPIFASTADatabase.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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-c pwiz/data/msdata/Version.cpp -o pwiz/data/msdata/Version.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakelPicker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ 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pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/T2D/.deps/SpectrumList_ABI_T2D.Tpo -c pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.cpp -o pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumListCache.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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-I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumListCache.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumListCache.Tpo -c pwiz/data/msdata/SpectrumListCache.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumListCache.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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pwiz/data/msdata/SpectrumListCache.cpp -o pwiz/data/msdata/SpectrumListCache.o >/dev/null 2>&1 depbase=`echo pwiz_tools/common/MSDataAnalyzerApplication.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 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-D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/TabReader.lo -MD -MP -MF pwiz/utility/misc/.deps/TabReader.Tpo -c pwiz/utility/misc/TabReader.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/TabReader.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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-DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/TabReader.lo -MD -MP -MF pwiz/utility/misc/.deps/TabReader.Tpo -c pwiz/utility/misc/TabReader.cpp -o pwiz/utility/misc/TabReader.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/FeatureModeler.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureModeler.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureModeler.lo pwiz/analysis/peakdetect/FeatureModeler.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureModeler.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureModeler.Tpo -c pwiz/analysis/peakdetect/FeatureModeler.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureModeler.o In file included from ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/analysis/peakdetect/FeatureModeler.cpp:28: ./pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/TabReader.hpp:29, from ./pwiz/utility/misc/MSIHandler.hpp:28, from ./pwiz/data/misc/PeakData.hpp:29, from pwiz/analysis/peakdetect/MZRTField.hpp:29, from pwiz/analysis/peakdetect/FeatureModeler.hpp:28, from pwiz/analysis/peakdetect/FeatureModeler.cpp:25: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/peakdetect/FeatureModeler.cpp:28: ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/TabReader.hpp:29, from ./pwiz/utility/misc/MSIHandler.hpp:28, from ./pwiz/data/misc/PeakData.hpp:29, from pwiz/analysis/peakdetect/MZRTField.hpp:29, from pwiz/analysis/peakdetect/FeatureModeler.hpp:28, from pwiz/analysis/peakdetect/FeatureModeler.cpp:25: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ 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pwiz/data/proteome/AminoAcid.lo pwiz/data/proteome/AminoAcid.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 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-DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 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-I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/DefaultReaderList.lo -MD -MP -MF pwiz/data/proteome/.deps/DefaultReaderList.Tpo -c pwiz/data/proteome/DefaultReaderList.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/DefaultReaderList.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/DefaultReaderList.lo -MD -MP -MF pwiz/data/proteome/.deps/DefaultReaderList.Tpo -c pwiz/data/proteome/DefaultReaderList.cpp -o pwiz/data/proteome/DefaultReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peptideid/PeptideID_pepXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_pepXML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peptideid/PeptideID_pepXML.lo pwiz/analysis/peptideid/PeptideID_pepXML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_pepXML.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_pepXML.Tpo -c pwiz/analysis/peptideid/PeptideID_pepXML.cpp -fPIC -DPIC -o pwiz/analysis/peptideid/.libs/PeptideID_pepXML.o pwiz/analysis/peptideid/PeptideID_pepXML.cpp: In constructor ‘pwiz::peptideid::PeptideID_pepXml::Impl::Impl(std::istream*)’: pwiz/analysis/peptideid/PeptideID_pepXML.cpp:110:23: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, declared with attribute ‘nodiscard’ [-Wunused-result] 110 | filename.empty(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/11/string:55, from /usr/include/c++/11/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from ./pwiz/utility/misc/Std.hpp:28, from pwiz/analysis/peptideid/PeptideID_pepXML.cpp:25: /usr/include/c++/11/bits/basic_string.h:1023:7: note: declared here 1023 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_pepXML.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_pepXML.Tpo -c pwiz/analysis/peptideid/PeptideID_pepXML.cpp -o pwiz/analysis/peptideid/PeptideID_pepXML.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 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-DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 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-flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorSimple.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureDetectorSimple.lo pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorSimple.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorSimple.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureDetectorSimple.o In file included from pwiz/analysis/peakdetect/FeatureDetector.hpp:27, from pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp:26, from pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp:25: pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ whose type uses the anonymous namespace [-Wsubobject-linkage] 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^~~~~~~~~ pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ whose type uses the anonymous namespace [-Wsubobject-linkage] libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorSimple.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorSimple.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp -o pwiz/analysis/peakdetect/FeatureDetectorSimple.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/SHA1.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/SHA1.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/SHA1.lo pwiz/utility/misc/SHA1.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/SHA1.lo -MD -MP -MF pwiz/utility/misc/.deps/SHA1.Tpo -c pwiz/utility/misc/SHA1.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/SHA1.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/SHA1.lo -MD -MP -MF pwiz/utility/misc/.deps/SHA1.Tpo -c pwiz/utility/misc/SHA1.cpp -o pwiz/utility/misc/SHA1.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/VendorReaderTestHarness.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-c -o pwiz/analysis/demux/DemuxSolver.lo pwiz/analysis/demux/DemuxSolver.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 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/<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/WhittakerSmoother.lo -MD -MP -MF pwiz/analysis/common/.deps/WhittakerSmoother.Tpo -c pwiz/analysis/common/WhittakerSmoother.cpp -o pwiz/analysis/common/WhittakerSmoother.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/OverlapDemultiplexer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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pwiz/analysis/spectrum_processing/SpectrumList_Smoother.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 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compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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pwiz/data/vendor_readers/Bruker/Reader_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/Reader_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp -o pwiz/data/vendor_readers/Bruker/Reader_Bruker.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/ChromatogramList_mzML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 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x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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pwiz/data/msdata/ChromatogramList_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/ChromatogramList_mzML.Tpo -c pwiz/data/msdata/ChromatogramList_mzML.cpp -o pwiz/data/msdata/ChromatogramList_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/data/misc/MinimumPepXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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"-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/MinimumPepXML.lo -MD -MP -MF pwiz/data/misc/.deps/MinimumPepXML.Tpo -c pwiz/data/misc/MinimumPepXML.cpp -fPIC -DPIC -o pwiz/data/misc/.libs/MinimumPepXML.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/MinimumPepXML.lo -MD -MP -MF pwiz/data/misc/.deps/MinimumPepXML.Tpo -c pwiz/data/misc/MinimumPepXML.cpp -o pwiz/data/misc/MinimumPepXML.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeEnvelopeEstimator.Tpo -c pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/IsotopeEnvelopeEstimator.o In file included from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:29, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:29, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeEnvelopeEstimator.Tpo -c pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp -o pwiz/utility/chemistry/IsotopeEnvelopeEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/common/SavitzkyGolaySmoother.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/SavitzkyGolaySmoother.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/common/SavitzkyGolaySmoother.lo pwiz/analysis/common/SavitzkyGolaySmoother.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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pwiz/analysis/common/.deps/SavitzkyGolaySmoother.Tpo -c pwiz/analysis/common/SavitzkyGolaySmoother.cpp -fPIC -DPIC -o pwiz/analysis/common/.libs/SavitzkyGolaySmoother.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/SavitzkyGolaySmoother.lo -MD -MP -MF pwiz/analysis/common/.deps/SavitzkyGolaySmoother.Tpo -c pwiz/analysis/common/SavitzkyGolaySmoother.cpp -o pwiz/analysis/common/SavitzkyGolaySmoother.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ 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-DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/proteome_processing/ProteinListFactory.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinListFactory.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/proteome_processing/ProteinListFactory.lo pwiz/analysis/proteome_processing/ProteinListFactory.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinListFactory.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinListFactory.Tpo -c pwiz/analysis/proteome_processing/ProteinListFactory.cpp -fPIC -DPIC -o pwiz/analysis/proteome_processing/.libs/ProteinListFactory.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinListFactory.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinListFactory.Tpo -c pwiz/analysis/proteome_processing/ProteinListFactory.cpp -o pwiz/analysis/proteome_processing/ProteinListFactory.o >/dev/null 2>&1 depbase=`echo pwiz/utility/math/Stats.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Stats.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/math/Stats.lo pwiz/utility/math/Stats.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Stats.lo -MD -MP -MF pwiz/utility/math/.deps/Stats.Tpo -c pwiz/utility/math/Stats.cpp -fPIC -DPIC -o pwiz/utility/math/.libs/Stats.o In file included from pwiz/utility/math/Stats.cpp:26: pwiz/utility/math/Stats.hpp:57:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 57 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/numeric/ublas/fwd.hpp:18, from /usr/include/boost/numeric/ublas/detail/config.hpp:299, from /usr/include/boost/numeric/ublas/exception.hpp:19, from /usr/include/boost/numeric/ublas/storage.hpp:25, from /usr/include/boost/numeric/ublas/vector.hpp:21, from pwiz/utility/math/Stats.hpp:29, from pwiz/utility/math/Stats.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Stats.lo -MD -MP -MF pwiz/utility/math/.deps/Stats.Tpo -c pwiz/utility/math/Stats.cpp -o pwiz/utility/math/Stats.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RegionAnalyzer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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-DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Modification.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/Modification.lo pwiz/data/proteome/Modification.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Modification.lo -MD -MP -MF pwiz/data/proteome/.deps/Modification.Tpo -c pwiz/data/proteome/Modification.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Modification.o pwiz/data/proteome/Modification.cpp:89:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 89 | auto_ptr formula_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/data/proteome/Peptide.hpp:29, from pwiz/data/proteome/Modification.hpp:30, from pwiz/data/proteome/Modification.cpp:27: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Modification.lo -MD -MP -MF pwiz/data/proteome/.deps/Modification.Tpo -c pwiz/data/proteome/Modification.cpp -o pwiz/data/proteome/Modification.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" 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"/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ChargeStateCalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeStateCalculator.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 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-I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_Filter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Filter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_Filter.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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pwiz/analysis/spectrum_processing/SpectrumList_Filter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Filter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_Filter.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/ProteinListCache.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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-DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 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-I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/ProteinListCache.lo -MD -MP -MF pwiz/data/proteome/.deps/ProteinListCache.Tpo -c pwiz/data/proteome/ProteinListCache.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/ProteinListCache.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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pwiz/data/proteome/ProteinListCache.cpp -o pwiz/data/proteome/ProteinListCache.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/Noise.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Index_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Index_mzML.Tpo -c pwiz/data/msdata/Index_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Index_mzML.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 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-DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Index_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Index_mzML.Tpo -c pwiz/data/msdata/Index_mzML.cpp -o pwiz/data/msdata/Index_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/ParameterEstimator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/ParameterEstimator.lo pwiz/analysis/frequency/ParameterEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/ParameterEstimator.Tpo -c pwiz/analysis/frequency/ParameterEstimator.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/ParameterEstimator.o In file included from pwiz/analysis/frequency/ParameterEstimator.cpp:24: pwiz/analysis/frequency/ParameterEstimator.hpp:49:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | static std::auto_ptr create(const Function& function, | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.cpp:24: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/ParameterEstimator.cpp:65:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr ParameterEstimator::create(const Function& function, | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.cpp:24: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/ParameterEstimator.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::ParameterEstimator::create(const Function&, const Data&, const Parameters&)’: pwiz/analysis/frequency/ParameterEstimator.cpp:69:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | return auto_ptr(new ParameterEstimatorImpl(function, data, initialEstimate)); | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.cpp:24: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/ParameterEstimator.Tpo -c pwiz/analysis/frequency/ParameterEstimator.cpp -o pwiz/analysis/frequency/ParameterEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/FrequencyEstimatorSimple.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/FrequencyEstimatorSimple.lo pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorSimple.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/FrequencyEstimatorSimple.o In file included from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:45:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 45 | static std::auto_ptr create(Type type = Parabola, | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:63:15: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | PWIZ_API_DECL auto_ptr FrequencyEstimatorSimple::create(Type type, | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::FrequencyEstimatorSimple::create(pwiz::frequency::FrequencyEstimatorSimple::Type, unsigned int)’: pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:66:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 66 | return auto_ptr( | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorSimple.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp -o pwiz/analysis/frequency/FrequencyEstimatorSimple.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_Filter.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.cpp -fPIC -DPIC -o pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_Filter.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_Filter.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.cpp -o pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/PepXMLCat.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/PepXMLCat.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/PepXMLCat.lo pwiz/analysis/passive/PepXMLCat.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/PepXMLCat.lo -MD -MP -MF pwiz/analysis/passive/.deps/PepXMLCat.Tpo -c pwiz/analysis/passive/PepXMLCat.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/PepXMLCat.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/PepXMLCat.lo -MD -MP -MF pwiz/analysis/passive/.deps/PepXMLCat.Tpo -c pwiz/analysis/passive/PepXMLCat.cpp -o pwiz/analysis/passive/PepXMLCat.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorPeakel.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureDetectorPeakel.o In file included from pwiz/analysis/peakdetect/FeatureDetector.hpp:27, from pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp:28, from pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp:25: pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ whose type uses the anonymous namespace [-Wsubobject-linkage] 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^~~~~~~~~ pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ whose type uses the anonymous namespace [-Wsubobject-linkage] libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorPeakel.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp -o pwiz/analysis/peakdetect/FeatureDetectorPeakel.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/MS2Deisotoper.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/MS2Deisotoper.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/MS2Deisotoper.lo pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/MS2Deisotoper.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/MS2Deisotoper.Tpo -c pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/MS2Deisotoper.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/MS2Deisotoper.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/MS2Deisotoper.Tpo -c pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp -o pwiz/analysis/spectrum_processing/MS2Deisotoper.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 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-Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MetadataFixer.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_MetadataFixer.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MetadataFixer.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Waters/Reader_Waters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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pwiz/data/vendor_readers/Waters/Reader_Waters.lo pwiz/data/vendor_readers/Waters/Reader_Waters.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 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-Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Waters/Reader_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/Reader_Waters.Tpo -c pwiz/data/vendor_readers/Waters/Reader_Waters.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Waters/.libs/Reader_Waters.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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pwiz/data/msdata/SpectrumInfo.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 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-Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumInfo.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumInfo.Tpo -c pwiz/data/msdata/SpectrumInfo.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumInfo.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 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pwiz/data/msdata/SpectrumInfo.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumInfo.Tpo -c pwiz/data/msdata/SpectrumInfo.cpp -o pwiz/data/msdata/SpectrumInfo.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peptideid/PeptideID_flat.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_flat.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peptideid/PeptideID_flat.lo pwiz/analysis/peptideid/PeptideID_flat.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_flat.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_flat.Tpo -c pwiz/analysis/peptideid/PeptideID_flat.cpp -fPIC -DPIC -o pwiz/analysis/peptideid/.libs/PeptideID_flat.o pwiz/analysis/peptideid/PeptideID_flat.cpp: In constructor ‘pwiz::peptideid::PeptideID_flat::Impl::Impl(std::istream*, boost::shared_ptr)’: pwiz/analysis/peptideid/PeptideID_flat.cpp:117:23: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, declared with attribute ‘nodiscard’ [-Wunused-result] 117 | filename.empty(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/11/string:55, from /usr/include/c++/11/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from ./pwiz/utility/misc/Std.hpp:28, from pwiz/analysis/peptideid/PeptideID_flat.cpp:25: /usr/include/c++/11/bits/basic_string.h:1023:7: note: declared here 1023 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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--tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-MD -MP -MF pwiz/data/identdata/.deps/examples.Tpo -c pwiz/data/identdata/examples.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/examples.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 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-Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/examples.lo -MD -MP -MF pwiz/data/identdata/.deps/examples.Tpo -c pwiz/data/identdata/examples.cpp -o pwiz/data/identdata/examples.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 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-DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorPhysicalModel.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/FrequencyEstimatorPhysicalModel.o In file included from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:53:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 53 | static std::auto_ptr create(const Config& config); | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:27: pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:43:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 43 | static std::auto_ptr create(); | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:60:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 60 | auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::FrequencyEstimatorPhysicalModel::create(const pwiz::frequency::FrequencyEstimatorPhysicalModel::Config&)’: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:63:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | return auto_ptr( | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp: In member function ‘virtual pwiz::data::peakdata::Peak FrequencyEstimatorPhysicalModelImpl::estimate(const FrequencyData&, const Peak&) const’: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:100:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 100 | auto_ptr estimator = TruncatedLorentzianEstimator::create(); | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 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pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorMassFilter.Tpo -c pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/PrecursorMassFilter.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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pwiz/utility/misc/SHA1Calculator.lo -MD -MP -MF pwiz/utility/misc/.deps/SHA1Calculator.Tpo -c pwiz/utility/misc/SHA1Calculator.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/SHA1Calculator.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/SHA1Calculator.lo -MD -MP -MF pwiz/utility/misc/.deps/SHA1Calculator.Tpo -c pwiz/utility/misc/SHA1Calculator.cpp -o pwiz/utility/misc/SHA1Calculator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFamilyDetector.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" 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"/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetector.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/PeakFamilyDetector.lo pwiz/analysis/peakdetect/PeakFamilyDetector.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetector.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetector.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetector.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFamilyDetector.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetector.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetector.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetector.cpp -o pwiz/analysis/peakdetect/PeakFamilyDetector.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFTTestData.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 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-Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetectorFTTestData.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.cpp -o pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/DelimReader.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" 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pwiz/data/identdata/.libs/DelimReader.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 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-DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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pwiz/data/vendor_readers/UIMF/.deps/Reader_UIMF.Tpo -c pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp -o pwiz/data/vendor_readers/UIMF/Reader_UIMF.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFinder.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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pwiz/analysis/peakdetect/PeakFinder.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/examples.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 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-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeCalculator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeCalculator.Tpo -c pwiz/utility/chemistry/IsotopeCalculator.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/IsotopeCalculator.o In file included from pwiz/utility/chemistry/IsotopeCalculator.cpp:26: pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeCalculator.hpp:29, from pwiz/utility/chemistry/IsotopeCalculator.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/utility/chemistry/IsotopeCalculator.cpp:27: pwiz/utility/chemistry/IsotopeTable.hpp:50:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 50 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeCalculator.hpp:29, from pwiz/utility/chemistry/IsotopeCalculator.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeCalculator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeCalculator.Tpo -c pwiz/utility/chemistry/IsotopeCalculator.cpp -o pwiz/utility/chemistry/IsotopeCalculator.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ExtendedReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ExtendedReaderList.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/ExtendedReaderList.lo pwiz/data/vendor_readers/ExtendedReaderList.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ExtendedReaderList.lo -MD -MP -MF pwiz/data/vendor_readers/.deps/ExtendedReaderList.Tpo -c pwiz/data/vendor_readers/ExtendedReaderList.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/.libs/ExtendedReaderList.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ExtendedReaderList.lo -MD -MP -MF pwiz/data/vendor_readers/.deps/ExtendedReaderList.Tpo -c pwiz/data/vendor_readers/ExtendedReaderList.cpp -o pwiz/data/vendor_readers/ExtendedReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/PeakDetectorNaive.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorNaive.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/PeakDetectorNaive.lo pwiz/analysis/frequency/PeakDetectorNaive.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorNaive.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorNaive.Tpo -c pwiz/analysis/frequency/PeakDetectorNaive.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/PeakDetectorNaive.o In file included from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: pwiz/analysis/frequency/PeakDetectorNaive.hpp:50:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 50 | static std::auto_ptr create(double noiseFactor = 5, | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorNaive.cpp:56:15: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 56 | PWIZ_API_DECL auto_ptr PeakDetectorNaive::create(double noiseFactor, | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorNaive.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::PeakDetectorNaive::create(double, unsigned int)’: pwiz/analysis/frequency/PeakDetectorNaive.cpp:59:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 59 | return auto_ptr(new PeakDetectorNaiveImpl(noiseFactor, detectionRadius)); | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorNaive.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorNaive.Tpo -c pwiz/analysis/frequency/PeakDetectorNaive.cpp -o pwiz/analysis/frequency/PeakDetectorNaive.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Reader.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 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pwiz/data/proteome/Reader.lo pwiz/data/proteome/Reader.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 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-Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Reader.lo -MD -MP -MF pwiz/data/proteome/.deps/Reader.Tpo -c pwiz/data/proteome/Reader.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Reader.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Reader.lo -MD -MP -MF pwiz/data/proteome/.deps/Reader.Tpo -c pwiz/data/proteome/Reader.cpp -o pwiz/data/proteome/Reader.o >/dev/null 2>&1 depbase=`echo pwiz/data/misc/FrequencyData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/FrequencyData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/misc/FrequencyData.lo pwiz/data/misc/FrequencyData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/FrequencyData.lo -MD -MP -MF pwiz/data/misc/.deps/FrequencyData.Tpo -c pwiz/data/misc/FrequencyData.cpp -fPIC -DPIC -o pwiz/data/misc/.libs/FrequencyData.o In file included from pwiz/data/misc/FrequencyData.cpp:26: pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from pwiz/data/misc/SampleDatum.hpp:30, from pwiz/data/misc/FrequencyData.hpp:29, from pwiz/data/misc/FrequencyData.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/FrequencyData.lo -MD -MP -MF pwiz/data/misc/.deps/FrequencyData.Tpo -c pwiz/data/misc/FrequencyData.cpp -o pwiz/data/misc/FrequencyData.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.lo pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ZeroSamplesFilter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_ZeroSamplesFilter.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/DefaultReaderList.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/DefaultReaderList.lo pwiz/data/identdata/DefaultReaderList.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/DefaultReaderList.lo -MD -MP -MF pwiz/data/identdata/.deps/DefaultReaderList.Tpo -c pwiz/data/identdata/DefaultReaderList.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/DefaultReaderList.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/DefaultReaderList.lo -MD -MP -MF pwiz/data/identdata/.deps/DefaultReaderList.Tpo -c pwiz/data/identdata/DefaultReaderList.cpp -o pwiz/data/identdata/DefaultReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorMatchedFilter.Tpo -c pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilter.o In file included from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: ./pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:109:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 109 | static std::auto_ptr create(const Config& config); | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:116:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 116 | auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::PeakDetectorMatchedFilter::create(const pwiz::frequency::PeakDetectorMatchedFilter::Config&)’: pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:119:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 119 | return auto_ptr(new PeakDetectorMatchedFilterImpl(config)); | ^~~~~~~~ In file included from /usr/include/c++/11/bits/locale_conv.h:41, from /usr/include/c++/11/locale:43, from /usr/include/c++/11/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 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/usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorMatchedFilter.Tpo -c pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp -o pwiz/analysis/frequency/PeakDetectorMatchedFilter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/common/ExtraZeroSamplesFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 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/usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/ExtraZeroSamplesFilter.lo -MD -MP -MF pwiz/analysis/common/.deps/ExtraZeroSamplesFilter.Tpo -c pwiz/analysis/common/ExtraZeroSamplesFilter.cpp -o pwiz/analysis/common/ExtraZeroSamplesFilter.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 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x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/SpectrumList_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp -o pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.o >/dev/null 2>&1 depbase=`echo pwiz/utility/minimxml/SAXParser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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-DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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/<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/minimxml/SAXParser.lo -MD -MP -MF pwiz/utility/minimxml/.deps/SAXParser.Tpo -c pwiz/utility/minimxml/SAXParser.cpp -o pwiz/utility/minimxml/SAXParser.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 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pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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-DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 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-I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_IonMobility.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/IdentDataFile.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Demux.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_Demux.o pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp: In function ‘pwiz::analysis::SpectrumList_Demux::Params::optimizationToString[abi:cxx11](pwiz::analysis::SpectrumList_Demux::Params::Optimization)’: pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:200:96: warning: function may return address of local variable [-Wreturn-local-addr] 200 | return enumToString(opt, kOptimizationStrings); | ^ pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:200:70: note: declared here 200 | return enumToString(opt, kOptimizationStrings); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Demux.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_Demux.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Serializer_mzML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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-DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_mzML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Serializer_mzML.lo pwiz/data/msdata/Serializer_mzML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_mzML.Tpo -c pwiz/data/msdata/Serializer_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Serializer_mzML.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_mzML.Tpo -c pwiz/data/msdata/Serializer_mzML.cpp -o pwiz/data/msdata/Serializer_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Pep2MzIdent.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ 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-Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/MSIHandler.lo -MD -MP -MF pwiz/utility/misc/.deps/MSIHandler.Tpo -c pwiz/utility/misc/MSIHandler.cpp -o pwiz/utility/misc/MSIHandler.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/LegacyAdapter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 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-DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 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-I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/LegacyAdapter.lo -MD -MP -MF pwiz/data/msdata/.deps/LegacyAdapter.Tpo -c pwiz/data/msdata/LegacyAdapter.cpp -o pwiz/data/msdata/LegacyAdapter.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/MSDataMerger.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 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pwiz/data/msdata/MSDataMerger.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/MSDataMerger.lo pwiz/data/msdata/MSDataMerger.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 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pwiz/data/proteome/ProteomeData.lo pwiz/data/proteome/ProteomeData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 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-Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/ProteomeData.lo -MD -MP -MF pwiz/data/proteome/.deps/ProteomeData.Tpo -c pwiz/data/proteome/ProteomeData.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/ProteomeData.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 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$depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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$depbase.Tpo -c -o pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 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-DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ChargeFromIsotope.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/IsotopeTable.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeTable.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/IsotopeTable.lo pwiz/utility/chemistry/IsotopeTable.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeTable.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeTable.Tpo -c pwiz/utility/chemistry/IsotopeTable.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/IsotopeTable.o In file included from pwiz/utility/chemistry/IsotopeTable.cpp:26: pwiz/utility/chemistry/IsotopeTable.hpp:50:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 50 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeTable.hpp:29, from pwiz/utility/chemistry/IsotopeTable.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 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"/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxHelpers.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/DemuxHelpers.lo pwiz/analysis/demux/DemuxHelpers.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxHelpers.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxHelpers.Tpo -c pwiz/analysis/demux/DemuxHelpers.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/DemuxHelpers.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxHelpers.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxHelpers.Tpo -c pwiz/analysis/demux/DemuxHelpers.cpp -o pwiz/analysis/demux/DemuxHelpers.o >/dev/null 2>&1 depbase=`echo libraries/libsvm-3.0/svm.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/libsvm-3.0/svm.lo -MD -MP -MF $depbase.Tpo -c -o libraries/libsvm-3.0/svm.lo libraries/libsvm-3.0/svm.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/libsvm-3.0/svm.lo -MD -MP -MF libraries/libsvm-3.0/.deps/svm.Tpo -c libraries/libsvm-3.0/svm.cpp -fPIC -DPIC -o libraries/libsvm-3.0/.libs/svm.o libraries/libsvm-3.0/svm.cpp: In function ‘svm_model* svm_load_model(const char*)’: libraries/libsvm-3.0/svm.cpp:2707:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2707 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2711:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2711 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2733:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2733 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2754:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2754 | fscanf(fp,"%d",¶m.degree); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2756:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2756 | fscanf(fp,"%lf",¶m.gamma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2758:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2758 | fscanf(fp,"%lf",¶m.coef0); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2760:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2760 | fscanf(fp,"%d",&model->nr_class); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2762:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2762 | fscanf(fp,"%d",&model->l); | ~~~~~~^~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2768:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2768 | fscanf(fp,"%lf",&model->rho[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2775:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2775 | fscanf(fp,"%d",&model->label[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2782:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2782 | fscanf(fp,"%lf",&model->probA[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2789:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2789 | fscanf(fp,"%lf",&model->probB[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2796:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2796 | fscanf(fp,"%d",&model->nSV[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/libsvm-3.0/svm.lo -MD -MP -MF libraries/libsvm-3.0/.deps/svm.Tpo -c libraries/libsvm-3.0/svm.cpp -o libraries/libsvm-3.0/svm.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/SpectrumPeakExtractor.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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-ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/SpectrumPeakExtractor.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/SpectrumPeakExtractor.lo pwiz/analysis/demux/SpectrumPeakExtractor.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 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/usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/SpectrumPeakExtractor.lo -MD -MP -MF pwiz/analysis/demux/.deps/SpectrumPeakExtractor.Tpo -c pwiz/analysis/demux/SpectrumPeakExtractor.cpp -o pwiz/analysis/demux/SpectrumPeakExtractor.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_mzXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 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pwiz/data/tradata/Serializer_traML.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetectorFT.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFT.o In file included from ./pwiz/analysis/frequency/PeakDetector.hpp:29, from ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:27: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:27: ./pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:27: ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:27: ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:109:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 109 | static std::auto_ptr create(const Config& config); | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:61:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 61 | auto_ptr isotopeEnvelopeEstimator_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:62:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | auto_ptr pdmf_; | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:64:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 64 | auto_ptr createFrequencyData(const MZIntensityPair* begin, | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:130:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 130 | auto_ptr createIsotopeEnvelopeEstimator() | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: In function ‘std::auto_ptr pwiz::analysis::{anonymous}::createIsotopeEnvelopeEstimator()’: pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:139:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 139 | return auto_ptr(new IsotopeEnvelopeEstimator(config)); | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: In member function ‘void pwiz::analysis::PeakFamilyDetectorFT::Impl::detect(const MZIntensityPair*, const MZIntensityPair*, std::vector&)’: pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:169:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 169 | auto_ptr fd = createFrequencyData(begin, end); | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: At global scope: pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:181:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 181 | auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: In member function ‘std::auto_ptr pwiz::analysis::PeakFamilyDetectorFT::Impl::createFrequencyData(const MZIntensityPair*, const MZIntensityPair*) const’: pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:185:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 185 | auto_ptr fd(new FrequencyData); | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetectorFT.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp -o pwiz/analysis/peakdetect/PeakFamilyDetectorFT.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/DefaultReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 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-I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/TabularConfig.lo -MD -MP -MF pwiz/analysis/passive/.deps/TabularConfig.Tpo -c pwiz/analysis/passive/TabularConfig.cpp -o pwiz/analysis/passive/TabularConfig.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 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-I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/SpectrumList_Waters.Tpo -c pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp -o pwiz/data/vendor_readers/Waters/SpectrumList_Waters.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/chromatogram_processing/ChromatogramListFactory.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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-DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Peptide.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/Peptide.lo pwiz/data/proteome/Peptide.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Peptide.lo -MD -MP -MF pwiz/data/proteome/.deps/Peptide.Tpo -c pwiz/data/proteome/Peptide.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Peptide.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Peptide.lo -MD -MP -MF pwiz/data/proteome/.deps/Peptide.Tpo -c pwiz/data/proteome/Peptide.cpp -o pwiz/data/proteome/Peptide.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_mzML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_mzML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumList_mzML.lo pwiz/data/msdata/SpectrumList_mzML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_mzML.Tpo -c pwiz/data/msdata/SpectrumList_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumList_mzML.o In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/data/common/ParamTypes.hpp:33, from ./pwiz/data/msdata/MSData.hpp:30, from pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/msdata/SpectrumList_mzML.hpp:29, from pwiz/data/msdata/SpectrumList_mzML.cpp:26: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_mzML.Tpo -c pwiz/data/msdata/SpectrumList_mzML.cpp -o pwiz/data/msdata/SpectrumList_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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"/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.lo pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 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pwiz/data/vendor_readers/Shimadzu/.deps/SpectrumList_Shimadzu.Tpo -c pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Shimadzu/.libs/SpectrumList_Shimadzu.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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-flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_Sorter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_Sorter.lo pwiz/analysis/spectrum_processing/SpectrumList_Sorter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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pwiz/analysis/spectrum_processing/.libs/SpectrumList_Sorter.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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/usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/Filesystem.lo -MD -MP -MF pwiz/utility/misc/.deps/Filesystem.Tpo -c pwiz/utility/misc/Filesystem.cpp -o pwiz/utility/misc/Filesystem.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 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pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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-I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PeakFilter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/TruncatedLorentzianParameters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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-flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianParameters.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/TruncatedLorentzianParameters.lo pwiz/analysis/frequency/TruncatedLorentzianParameters.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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pwiz/analysis/frequency/.libs/TruncatedLorentzianParameters.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/References.lo -MD -MP -MF pwiz/data/identdata/.deps/References.Tpo -c pwiz/data/identdata/References.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/References.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" 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-ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/References.lo -MD -MP -MF pwiz/data/identdata/.deps/References.Tpo -c pwiz/data/identdata/References.cpp -o pwiz/data/identdata/References.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 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pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo -MD -MP -MF pwiz/analysis/frequency/.deps/MagnitudeLorentzianTestData.Tpo -c pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/MagnitudeLorentzianTestData.o pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp:28:20: warning: ‘sampleData_’ initialized and declared ‘extern’ 28 | extern const char* sampleData_ = | ^~~~~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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/<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo -MD -MP -MF pwiz/analysis/frequency/.deps/MagnitudeLorentzianTestData.Tpo -c pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp -o pwiz/analysis/frequency/MagnitudeLorentzianTestData.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumIterator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 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pwiz_tools/common/MSDataAnalyzerApplication.lo ./pwiz/analysis/demux/CubicHermiteSpline.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo ./pwiz/utility/misc/TabReader.lo ./pwiz/analysis/peakdetect/FeatureModeler.lo ./pwiz/data/msdata/Serializer_MSn.lo ./pwiz/data/common/diff_std.lo ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.lo ./pwiz/analysis/peakdetect/PeakelGrower.lo ./pwiz/data/proteome/AminoAcid.lo ./pwiz/data/proteome/DefaultReaderList.lo ./pwiz/analysis/peptideid/PeptideID_pepXML.lo ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo ./pwiz/analysis/peakdetect/PeakExtractor.lo ./pwiz/utility/misc/Base64.lo ./pwiz/data/msdata/SpectrumList_BTDX.lo ./pwiz/data/msdata/MSDataFile.lo ./pwiz/data/proteome/Reader_FASTA.lo ./pwiz/data/msdata/IO.lo ./pwiz/analysis/common/CwtPeakDetector.lo ./pwiz/analysis/peakdetect/FeatureDetectorSimple.lo ./pwiz/utility/misc/SHA1.lo ./pwiz/utility/misc/VendorReaderTestHarness.lo ./pwiz/analysis/demux/DemuxSolver.lo 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./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo ./pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo ./pwiz/utility/math/Parabola.lo ./pwiz/data/msdata/Serializer_MGF.lo ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.lo ./pwiz/data/vendor_readers/ABI/Reader_ABI.lo ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo ./pwiz/data/common/BinaryIndexStream.lo ./pwiz/analysis/passive/SpectrumBinaryData.lo ./pwiz/data/common/obo.lo ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo ./pwiz/utility/chemistry/IsotopeTable.lo ./pwiz/analysis/demux/DemuxHelpers.lo ./libraries/libsvm-3.0/svm.lo ./pwiz/analysis/demux/SpectrumPeakExtractor.lo ./pwiz/data/msdata/SpectrumList_mzXML.lo ./pwiz/data/common/ParamTypes.lo pwiz/data/tradata/Serializer_traML.lo ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo ./pwiz/data/msdata/DefaultReaderList.lo ./pwiz/data/misc/PeakData.lo ./pwiz/analysis/passive/TabularConfig.lo ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo ./pwiz/analysis/chromatogram_processing/ChromatogramListFactory.lo ./pwiz/analysis/frequency/MagnitudeLorentzian.lo ./pwiz/data/proteome/Peptide.lo ./pwiz/data/msdata/SpectrumList_mzML.lo ./pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.lo ./pwiz/data/msdata/Reader.lo ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.lo ./pwiz/utility/misc/Filesystem.lo ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo ./pwiz/analysis/frequency/TruncatedLorentzianParameters.lo ./pwiz/utility/misc/random_access_compressed_ifstream.lo ./pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.lo ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo pwiz/data/tradata/TraDataFile.lo ./pwiz/data/proteome/ProteomeDataFile.lo ./pwiz/data/identdata/KwCVMap.lo ./pwiz/data/identdata/Serializer_mzid.lo ./pwiz/data/identdata/References.lo ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo ./pwiz/data/msdata/SpectrumIterator.lo -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o ./libraries/boost_aux/libs/nowide/src/.libs/iostream.o ./pwiz/utility/math/.libs/erf.o ./pwiz/data/identdata/.libs/Version.o pwiz/data/tradata/.libs/Reader.o ./pwiz/data/msdata/.libs/Diff.o ./pwiz/data/vendor_readers/Thermo/.libs/SpectrumList_Thermo.o ./pwiz/analysis/peakdetect/.libs/PeakFitter.o ./pwiz/data/vendor_readers/UNIFI/.libs/SpectrumList_UNIFI.o ./pwiz/utility/minimxml/.libs/XMLWriter.o pwiz/data/tradata/.libs/DefaultReaderList.o ./pwiz/analysis/demux/.libs/DemuxDebugWriter.o ./pwiz/data/msdata/.libs/BinaryDataEncoder.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_3D.o ./pwiz/analysis/passive/.libs/RegionSlice.o ./pwiz/analysis/peptideid/.libs/PeptideIDMap.o ./pwiz/analysis/frequency/.libs/TruncatedLorentzianEstimator.o ./pwiz/analysis/spectrum_processing/.libs/PrecursorRecalculatorDefault.o ./pwiz/utility/proteome/.libs/IPIFASTADatabase.o pwiz/.libs/Version.o ./pwiz/data/vendor_readers/UNIFI/.libs/Reader_UNIFI_Detail.o ./pwiz/data/identdata/.libs/IdentData.o ./pwiz/data/msdata/.libs/Version.o ./pwiz/analysis/peakdetect/.libs/PeakelPicker.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_TitleMaker.o ./pwiz/data/vendor_readers/ABI/T2D/.libs/SpectrumList_ABI_T2D.o ./pwiz/data/msdata/.libs/SpectrumListCache.o pwiz_tools/common/.libs/MSDataAnalyzerApplication.o ./pwiz/analysis/demux/.libs/CubicHermiteSpline.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ScanSummer.o ./pwiz/utility/misc/.libs/TabReader.o ./pwiz/analysis/peakdetect/.libs/FeatureModeler.o ./pwiz/data/msdata/.libs/Serializer_MSn.o ./pwiz/data/common/.libs/diff_std.o ./pwiz/data/vendor_readers/ABI/.libs/ChromatogramList_ABI.o ./pwiz/analysis/peakdetect/.libs/PeakelGrower.o ./pwiz/data/proteome/.libs/AminoAcid.o ./pwiz/data/proteome/.libs/DefaultReaderList.o ./pwiz/analysis/peptideid/.libs/PeptideID_pepXML.o ./pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilterTestData.o ./pwiz/analysis/peakdetect/.libs/PeakExtractor.o ./pwiz/utility/misc/.libs/Base64.o ./pwiz/data/msdata/.libs/SpectrumList_BTDX.o ./pwiz/data/msdata/.libs/MSDataFile.o ./pwiz/data/proteome/.libs/Reader_FASTA.o ./pwiz/data/msdata/.libs/IO.o ./pwiz/analysis/common/.libs/CwtPeakDetector.o ./pwiz/analysis/peakdetect/.libs/FeatureDetectorSimple.o ./pwiz/utility/misc/.libs/SHA1.o ./pwiz/utility/misc/.libs/VendorReaderTestHarness.o ./pwiz/analysis/demux/.libs/DemuxSolver.o ./pwiz/data/msdata/.libs/SpectrumWorkerThreads.o ./pwiz/data/identdata/.libs/DelimWriter.o pwiz/data/tradata/.libs/IO.o ./pwiz/analysis/frequency/.libs/TruncatedLorentzian.o pwiz/data/tradata/.libs/TraData.o ./pwiz/data/msdata/.libs/SpectrumList_MSn.o pwiz/analysis/proteome_processing/.libs/ProteinList_DecoyGenerator.o ./pwiz/analysis/demux/.libs/MatrixIO.o ./pwiz/data/vendor_readers/Waters/.libs/ChromatogramList_Waters.o ./pwiz/analysis/common/.libs/WhittakerSmoother.o ./pwiz/analysis/demux/.libs/OverlapDemultiplexer.o ./pwiz/data/common/.libs/cv.o ./pwiz/analysis/demux/.libs/DemuxDebugReader.o ./pwiz/data/msdata/.libs/MSNumpress.o ./pwiz/data/msdata/.libs/examples.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_MZWindow.o ./pwiz/analysis/demux/.libs/PrecursorMaskCodec.o pwiz/data/tradata/.libs/Diff.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Smoother.o ./pwiz/data/proteome/.libs/Digestion.o ./pwiz/data/vendor_readers/Bruker/.libs/Reader_Bruker.o ./pwiz/data/msdata/.libs/ChromatogramList_mzML.o ./pwiz/data/misc/.libs/MinimumPepXML.o ./pwiz/utility/chemistry/.libs/IsotopeEnvelopeEstimator.o ./pwiz/analysis/common/.libs/SavitzkyGolaySmoother.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRecalculator.o pwiz/analysis/proteome_processing/.libs/ProteinListFactory.o ./pwiz/utility/math/.libs/Stats.o ./pwiz/analysis/passive/.libs/RegionAnalyzer.o ./pwiz/data/identdata/.libs/Serializer_Text.o ./pwiz/analysis/passive/.libs/RegionTIC.o ./pwiz/data/proteome/.libs/Serializer_FASTA.o ./pwiz/data/proteome/.libs/Modification.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeStateCalculator.o ./pwiz/analysis/spectrum_processing/.libs/ThresholdFilter.o ./pwiz/data/misc/.libs/FrequencyDataTestData.o ./pwiz/data/msdata/.libs/SpectrumList_MGF.o ./pwiz/data/vendor_readers/Thermo/.libs/ChromatogramList_Thermo.o ./pwiz/data/identdata/.libs/Serializer_pepXML.o ./pwiz/analysis/peakdetect/.libs/MZRTField.o ./pwiz/data/proteome/.libs/Diff.o ./pwiz/utility/chemistry/.libs/Chemistry.o ./pwiz/data/identdata/.libs/Diff.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Filter.o ./pwiz/data/proteome/.libs/ProteinListCache.o ./pwiz/analysis/peakdetect/.libs/Noise.o pwiz/data/tradata/.libs/Version.o ./pwiz/utility/chemistry/.libs/ChemistryData.o ./libraries/CSpline/.libs/CSpline.o ./pwiz/data/msdata/.libs/Index_mzML.o ./pwiz/analysis/frequency/.libs/ParameterEstimator.o ./pwiz/analysis/frequency/.libs/FrequencyEstimatorSimple.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_Filter.o ./pwiz/analysis/passive/.libs/PepXMLCat.o ./pwiz/analysis/peakdetect/.libs/FeatureDetectorPeakel.o ./pwiz/analysis/spectrum_processing/.libs/MS2Deisotoper.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_MetadataFixer.o ./pwiz/data/vendor_readers/Waters/.libs/Reader_Waters.o ./pwiz/data/msdata/.libs/SpectrumInfo.o ./pwiz/analysis/peptideid/.libs/PeptideID_flat.o ./pwiz/data/identdata/.libs/examples.o ./pwiz/analysis/frequency/.libs/FrequencyEstimatorPhysicalModel.o ./pwiz/utility/misc/.libs/IntegerSet.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_SavitzkyGolaySmoother.o ./pwiz/analysis/demux/.libs/MSXDemultiplexer.o ./pwiz/analysis/.libs/Version.o ./pwiz/data/common/.libs/MemoryIndex.o ./pwiz/analysis/spectrum_processing/.libs/PrecursorMassFilter.o ./pwiz/data/vendor_readers/Thermo/.libs/Reader_Thermo.o ./pwiz/utility/misc/.libs/SHA1Calculator.o ./pwiz/analysis/peakdetect/.libs/PeakFamilyDetector.o ./pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFTTestData.o ./pwiz/data/identdata/.libs/DelimReader.o ./pwiz/data/msdata/.libs/References.o ./pwiz/analysis/passive/.libs/MetadataReporter.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumListFactory.o pwiz/analysis/proteome_processing/.libs/ProteinList_Filter.o ./pwiz/data/vendor_readers/ABI/.libs/SpectrumList_ABI.o ./pwiz/analysis/passive/.libs/MSDataCache.o ./pwiz/analysis/passive/.libs/SpectrumTable.o ./pwiz/data/vendor_readers/UIMF/.libs/Reader_UIMF.o ./pwiz/analysis/peakdetect/.libs/PeakFinder.o ./pwiz/data/proteome/.libs/examples.o ./pwiz/data/msdata/.libs/MSData.o ./pwiz/utility/chemistry/.libs/IsotopeCalculator.o ./pwiz/data/vendor_readers/.libs/ExtendedReaderList.o ./pwiz/analysis/frequency/.libs/PeakDetectorNaive.o ./pwiz/data/proteome/.libs/Reader.o ./pwiz/data/misc/.libs/FrequencyData.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ZeroSamplesFilter.o ./pwiz/utility/misc/.libs/BinaryData.o ./pwiz/data/identdata/.libs/Serializer_protXML.o ./pwiz/utility/chemistry/.libs/MZTolerance.o ./pwiz/data/vendor_readers/UNIFI/.libs/Reader_UNIFI.o ./pwiz/data/vendor_readers/Agilent/.libs/ChromatogramList_Agilent.o ./pwiz/analysis/spectrum_processing/.libs/MS2NoiseFilter.o ./pwiz/data/identdata/.libs/Reader.o ./pwiz/utility/misc/.libs/IterationListener.o pwiz/data/tradata/.libs/examples.o ./pwiz/data/common/.libs/CVTranslator.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakPicker.o ./pwiz/data/common/.libs/Unimod.o ./pwiz/data/proteome/.libs/Version.o ./pwiz/data/identdata/.libs/IO.o ./pwiz/data/msdata/.libs/Serializer_mzXML.o ./pwiz/data/identdata/.libs/DefaultReaderList.o ./pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilter.o ./pwiz/analysis/common/.libs/ExtraZeroSamplesFilter.o ./pwiz/data/vendor_readers/Bruker/.libs/SpectrumList_Bruker.o ./pwiz/utility/minimxml/.libs/SAXParser.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_IonMobility.o ./pwiz/data/identdata/.libs/IdentDataFile.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Demux.o ./pwiz/data/msdata/.libs/Serializer_mzML.o ./pwiz/data/identdata/.libs/Pep2MzIdent.o ./pwiz/data/vendor_readers/Shimadzu/.libs/Reader_Shimadzu.o ./pwiz/analysis/passive/.libs/RegionSIC.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_LockmassRefiner.o ./pwiz/analysis/passive/.libs/RunSummary.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRefine.o pwiz/data/tradata/.libs/References.o ./pwiz/data/vendor_readers/Shimadzu/.libs/ChromatogramList_Shimadzu.o ./pwiz/analysis/common/.libs/ZeroSampleFiller.o ./pwiz/utility/misc/.libs/MSIHandler.o ./pwiz/data/msdata/.libs/LegacyAdapter.o ./pwiz/data/msdata/.libs/MSDataMerger.o ./pwiz/data/vendor_readers/Bruker/.libs/Reader_Bruker_Detail.o ./pwiz/data/proteome/.libs/ProteomeData.o ./pwiz/analysis/common/.libs/LocalMaximumPeakDetector.o ./pwiz/data/vendor_readers/Agilent/.libs/SpectrumList_Agilent.o ./pwiz/analysis/passive/.libs/MSDataAnalyzer.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_MZRefiner.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_XICGenerator.o ./pwiz/utility/math/.libs/Parabola.o ./pwiz/data/msdata/.libs/Serializer_MGF.o ./pwiz/data/vendor_readers/Bruker/.libs/ChromatogramList_Bruker.o ./pwiz/data/vendor_readers/ABI/.libs/Reader_ABI.o ./pwiz/data/vendor_readers/ABI/T2D/.libs/Reader_ABI_T2D.o ./pwiz/data/common/.libs/BinaryIndexStream.o ./pwiz/analysis/passive/.libs/SpectrumBinaryData.o ./pwiz/data/common/.libs/obo.o ./pwiz/data/vendor_readers/UIMF/.libs/SpectrumList_UIMF.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeFromIsotope.o ./pwiz/utility/chemistry/.libs/IsotopeTable.o ./pwiz/analysis/demux/.libs/DemuxHelpers.o ./libraries/libsvm-3.0/.libs/svm.o ./pwiz/analysis/demux/.libs/SpectrumPeakExtractor.o ./pwiz/data/msdata/.libs/SpectrumList_mzXML.o ./pwiz/data/common/.libs/ParamTypes.o pwiz/data/tradata/.libs/Serializer_traML.o ./pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFT.o ./pwiz/data/msdata/.libs/DefaultReaderList.o ./pwiz/data/misc/.libs/PeakData.o ./pwiz/analysis/passive/.libs/TabularConfig.o ./pwiz/data/vendor_readers/Waters/.libs/SpectrumList_Waters.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramListFactory.o ./pwiz/analysis/frequency/.libs/MagnitudeLorentzian.o ./pwiz/data/proteome/.libs/Peptide.o ./pwiz/data/msdata/.libs/SpectrumList_mzML.o ./pwiz/data/vendor_readers/Shimadzu/.libs/SpectrumList_Shimadzu.o ./pwiz/data/msdata/.libs/Reader.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Sorter.o ./pwiz/utility/misc/.libs/Filesystem.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakFilter.o ./pwiz/analysis/frequency/.libs/TruncatedLorentzianParameters.o ./pwiz/utility/misc/.libs/random_access_compressed_ifstream.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_LockmassRefiner.o ./pwiz/data/vendor_readers/Agilent/.libs/Reader_Agilent.o pwiz/data/tradata/.libs/TraDataFile.o ./pwiz/data/proteome/.libs/ProteomeDataFile.o ./pwiz/data/identdata/.libs/KwCVMap.o ./pwiz/data/identdata/.libs/Serializer_mzid.o ./pwiz/data/identdata/.libs/References.o ./pwiz/analysis/frequency/.libs/MagnitudeLorentzianTestData.o ./pwiz/data/msdata/.libs/SpectrumIterator.o -L/usr/lib/x86_64-linux-gnu -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -L/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o -g -O2 -flto=auto -flto=auto -fstack-protector-strong -Wl,-Bsymbolic-functions -flto=auto -flto=auto -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -Wl,-soname -Wl,libpwiz.so.3 -o .libs/libpwiz.so.3.0.0 pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: type 'struct MZRTField' violates the C++ One Definition Rule [-Wodr] 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^ pwiz/analysis/peakdetect/MZRTField.hpp:94:8: note: a type with different bases is defined in another translation unit 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^ pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: type 'struct MZRTField' violates the C++ One Definition Rule [-Wodr] 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^ pwiz/analysis/peakdetect/MZRTField.hpp:94:8: note: a type with different bases is defined in another translation unit 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^ pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp: In function 'optimizationToString': pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:200:96: warning: function may return address of local variable [-Wreturn-local-addr] 200 | return enumToString(opt, kOptimizationStrings); | ^ pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:200:70: note: declared here 200 | return enumToString(opt, kOptimizationStrings); | ^ libtool: link: (cd ".libs" && rm -f "libpwiz.so.3" && ln -s "libpwiz.so.3.0.0" "libpwiz.so.3") libtool: link: (cd ".libs" && rm -f "libpwiz.so" && ln -s "libpwiz.so.3.0.0" "libpwiz.so") copying selected object files to avoid basename conflicts... libtool: link: ln pwiz/Version.o .libs/libpwiz.lax/lt1-Version.o || cp pwiz/Version.o .libs/libpwiz.lax/lt1-Version.o libtool: link: ln ./pwiz/data/msdata/Version.o .libs/libpwiz.lax/lt2-Version.o || cp ./pwiz/data/msdata/Version.o .libs/libpwiz.lax/lt2-Version.o libtool: link: ln ./pwiz/data/proteome/DefaultReaderList.o .libs/libpwiz.lax/lt3-DefaultReaderList.o || cp ./pwiz/data/proteome/DefaultReaderList.o .libs/libpwiz.lax/lt3-DefaultReaderList.o libtool: link: ln pwiz/data/tradata/IO.o .libs/libpwiz.lax/lt4-IO.o || cp pwiz/data/tradata/IO.o .libs/libpwiz.lax/lt4-IO.o libtool: link: ln pwiz/data/tradata/Diff.o .libs/libpwiz.lax/lt5-Diff.o || cp pwiz/data/tradata/Diff.o .libs/libpwiz.lax/lt5-Diff.o libtool: link: ln ./pwiz/data/proteome/Diff.o .libs/libpwiz.lax/lt6-Diff.o || cp ./pwiz/data/proteome/Diff.o .libs/libpwiz.lax/lt6-Diff.o libtool: link: ln ./pwiz/data/identdata/Diff.o .libs/libpwiz.lax/lt7-Diff.o || cp ./pwiz/data/identdata/Diff.o .libs/libpwiz.lax/lt7-Diff.o libtool: link: ln pwiz/data/tradata/Version.o .libs/libpwiz.lax/lt8-Version.o || cp pwiz/data/tradata/Version.o .libs/libpwiz.lax/lt8-Version.o libtool: link: ln ./pwiz/data/identdata/examples.o .libs/libpwiz.lax/lt9-examples.o || cp ./pwiz/data/identdata/examples.o .libs/libpwiz.lax/lt9-examples.o libtool: link: ln ./pwiz/analysis/Version.o .libs/libpwiz.lax/lt10-Version.o || cp ./pwiz/analysis/Version.o .libs/libpwiz.lax/lt10-Version.o libtool: link: ln ./pwiz/data/proteome/examples.o .libs/libpwiz.lax/lt11-examples.o || cp ./pwiz/data/proteome/examples.o .libs/libpwiz.lax/lt11-examples.o libtool: link: ln ./pwiz/data/proteome/Reader.o .libs/libpwiz.lax/lt12-Reader.o || cp ./pwiz/data/proteome/Reader.o .libs/libpwiz.lax/lt12-Reader.o libtool: link: ln ./pwiz/data/identdata/Reader.o .libs/libpwiz.lax/lt13-Reader.o || cp ./pwiz/data/identdata/Reader.o .libs/libpwiz.lax/lt13-Reader.o libtool: link: ln pwiz/data/tradata/examples.o .libs/libpwiz.lax/lt14-examples.o || cp pwiz/data/tradata/examples.o .libs/libpwiz.lax/lt14-examples.o libtool: link: ln ./pwiz/data/proteome/Version.o .libs/libpwiz.lax/lt15-Version.o || cp ./pwiz/data/proteome/Version.o .libs/libpwiz.lax/lt15-Version.o libtool: link: ln ./pwiz/data/identdata/IO.o .libs/libpwiz.lax/lt16-IO.o || cp ./pwiz/data/identdata/IO.o .libs/libpwiz.lax/lt16-IO.o libtool: link: ln ./pwiz/data/identdata/DefaultReaderList.o .libs/libpwiz.lax/lt17-DefaultReaderList.o || cp ./pwiz/data/identdata/DefaultReaderList.o .libs/libpwiz.lax/lt17-DefaultReaderList.o libtool: link: ln pwiz/data/tradata/References.o .libs/libpwiz.lax/lt18-References.o || cp pwiz/data/tradata/References.o .libs/libpwiz.lax/lt18-References.o libtool: link: ln ./pwiz/data/msdata/DefaultReaderList.o .libs/libpwiz.lax/lt19-DefaultReaderList.o || cp ./pwiz/data/msdata/DefaultReaderList.o .libs/libpwiz.lax/lt19-DefaultReaderList.o libtool: link: ln ./pwiz/data/msdata/Reader.o .libs/libpwiz.lax/lt20-Reader.o || cp ./pwiz/data/msdata/Reader.o .libs/libpwiz.lax/lt20-Reader.o libtool: link: ln ./pwiz/data/identdata/References.o .libs/libpwiz.lax/lt21-References.o || cp ./pwiz/data/identdata/References.o .libs/libpwiz.lax/lt21-References.o libtool: link: x86_64-linux-gnu-ar cr .libs/libpwiz.a ./libraries/boost_aux/libs/nowide/src/iostream.o ./pwiz/utility/math/erf.o ./pwiz/data/identdata/Version.o pwiz/data/tradata/Reader.o ./pwiz/data/msdata/Diff.o ./pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.o ./pwiz/analysis/peakdetect/PeakFitter.o ./pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.o ./pwiz/utility/minimxml/XMLWriter.o pwiz/data/tradata/DefaultReaderList.o ./pwiz/analysis/demux/DemuxDebugWriter.o ./pwiz/data/msdata/BinaryDataEncoder.o ./pwiz/analysis/spectrum_processing/SpectrumList_3D.o ./pwiz/analysis/passive/RegionSlice.o ./pwiz/analysis/peptideid/PeptideIDMap.o ./pwiz/analysis/frequency/TruncatedLorentzianEstimator.o ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.o ./pwiz/utility/proteome/IPIFASTADatabase.o .libs/libpwiz.lax/lt1-Version.o ./pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.o ./pwiz/data/identdata/IdentData.o .libs/libpwiz.lax/lt2-Version.o ./pwiz/analysis/peakdetect/PeakelPicker.o ./pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.o ./pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.o ./pwiz/data/msdata/SpectrumListCache.o pwiz_tools/common/MSDataAnalyzerApplication.o ./pwiz/analysis/demux/CubicHermiteSpline.o ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.o ./pwiz/utility/misc/TabReader.o ./pwiz/analysis/peakdetect/FeatureModeler.o ./pwiz/data/msdata/Serializer_MSn.o ./pwiz/data/common/diff_std.o ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.o ./pwiz/analysis/peakdetect/PeakelGrower.o ./pwiz/data/proteome/AminoAcid.o .libs/libpwiz.lax/lt3-DefaultReaderList.o ./pwiz/analysis/peptideid/PeptideID_pepXML.o ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.o ./pwiz/analysis/peakdetect/PeakExtractor.o ./pwiz/utility/misc/Base64.o ./pwiz/data/msdata/SpectrumList_BTDX.o ./pwiz/data/msdata/MSDataFile.o ./pwiz/data/proteome/Reader_FASTA.o ./pwiz/data/msdata/IO.o ./pwiz/analysis/common/CwtPeakDetector.o ./pwiz/analysis/peakdetect/FeatureDetectorSimple.o ./pwiz/utility/misc/SHA1.o ./pwiz/utility/misc/VendorReaderTestHarness.o ./pwiz/analysis/demux/DemuxSolver.o ./pwiz/data/msdata/SpectrumWorkerThreads.o ./pwiz/data/identdata/DelimWriter.o .libs/libpwiz.lax/lt4-IO.o ./pwiz/analysis/frequency/TruncatedLorentzian.o pwiz/data/tradata/TraData.o ./pwiz/data/msdata/SpectrumList_MSn.o pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.o ./pwiz/analysis/demux/MatrixIO.o ./pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.o ./pwiz/analysis/common/WhittakerSmoother.o ./pwiz/analysis/demux/OverlapDemultiplexer.o ./pwiz/data/common/cv.o ./pwiz/analysis/demux/DemuxDebugReader.o ./pwiz/data/msdata/MSNumpress.o ./pwiz/data/msdata/examples.o ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.o ./pwiz/analysis/demux/PrecursorMaskCodec.o .libs/libpwiz.lax/lt5-Diff.o ./pwiz/analysis/spectrum_processing/SpectrumList_Smoother.o ./pwiz/data/proteome/Digestion.o ./pwiz/data/vendor_readers/Bruker/Reader_Bruker.o ./pwiz/data/msdata/ChromatogramList_mzML.o ./pwiz/data/misc/MinimumPepXML.o ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.o ./pwiz/analysis/common/SavitzkyGolaySmoother.o ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.o pwiz/analysis/proteome_processing/ProteinListFactory.o ./pwiz/utility/math/Stats.o ./pwiz/analysis/passive/RegionAnalyzer.o ./pwiz/data/identdata/Serializer_Text.o ./pwiz/analysis/passive/RegionTIC.o ./pwiz/data/proteome/Serializer_FASTA.o ./pwiz/data/proteome/Modification.o ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.o ./pwiz/analysis/spectrum_processing/ThresholdFilter.o ./pwiz/data/misc/FrequencyDataTestData.o ./pwiz/data/msdata/SpectrumList_MGF.o ./pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.o ./pwiz/data/identdata/Serializer_pepXML.o ./pwiz/analysis/peakdetect/MZRTField.o .libs/libpwiz.lax/lt6-Diff.o ./pwiz/utility/chemistry/Chemistry.o .libs/libpwiz.lax/lt7-Diff.o ./pwiz/analysis/spectrum_processing/SpectrumList_Filter.o ./pwiz/data/proteome/ProteinListCache.o ./pwiz/analysis/peakdetect/Noise.o .libs/libpwiz.lax/lt8-Version.o ./pwiz/utility/chemistry/ChemistryData.o ./libraries/CSpline/CSpline.o ./pwiz/data/msdata/Index_mzML.o ./pwiz/analysis/frequency/ParameterEstimator.o ./pwiz/analysis/frequency/FrequencyEstimatorSimple.o ./pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.o ./pwiz/analysis/passive/PepXMLCat.o ./pwiz/analysis/peakdetect/FeatureDetectorPeakel.o ./pwiz/analysis/spectrum_processing/MS2Deisotoper.o ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.o ./pwiz/data/vendor_readers/Waters/Reader_Waters.o ./pwiz/data/msdata/SpectrumInfo.o ./pwiz/analysis/peptideid/PeptideID_flat.o .libs/libpwiz.lax/lt9-examples.o ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.o ./pwiz/utility/misc/IntegerSet.o ./pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.o ./pwiz/analysis/demux/MSXDemultiplexer.o .libs/libpwiz.lax/lt10-Version.o ./pwiz/data/common/MemoryIndex.o ./pwiz/analysis/spectrum_processing/PrecursorMassFilter.o ./pwiz/data/vendor_readers/Thermo/Reader_Thermo.o ./pwiz/utility/misc/SHA1Calculator.o ./pwiz/analysis/peakdetect/PeakFamilyDetector.o ./pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.o ./pwiz/data/identdata/DelimReader.o ./pwiz/data/msdata/References.o ./pwiz/analysis/passive/MetadataReporter.o ./pwiz/analysis/spectrum_processing/SpectrumListFactory.o pwiz/analysis/proteome_processing/ProteinList_Filter.o ./pwiz/data/vendor_readers/ABI/SpectrumList_ABI.o ./pwiz/analysis/passive/MSDataCache.o ./pwiz/analysis/passive/SpectrumTable.o ./pwiz/data/vendor_readers/UIMF/Reader_UIMF.o ./pwiz/analysis/peakdetect/PeakFinder.o .libs/libpwiz.lax/lt11-examples.o ./pwiz/data/msdata/MSData.o ./pwiz/utility/chemistry/IsotopeCalculator.o ./pwiz/data/vendor_readers/ExtendedReaderList.o ./pwiz/analysis/frequency/PeakDetectorNaive.o .libs/libpwiz.lax/lt12-Reader.o ./pwiz/data/misc/FrequencyData.o ./pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.o ./pwiz/utility/misc/BinaryData.o ./pwiz/data/identdata/Serializer_protXML.o ./pwiz/utility/chemistry/MZTolerance.o ./pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.o ./pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.o ./pwiz/analysis/spectrum_processing/MS2NoiseFilter.o .libs/libpwiz.lax/lt13-Reader.o ./pwiz/utility/misc/IterationListener.o .libs/libpwiz.lax/lt14-examples.o ./pwiz/data/common/CVTranslator.o ./pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.o ./pwiz/data/common/Unimod.o .libs/libpwiz.lax/lt15-Version.o .libs/libpwiz.lax/lt16-IO.o ./pwiz/data/msdata/Serializer_mzXML.o .libs/libpwiz.lax/lt17-DefaultReaderList.o ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.o ./pwiz/analysis/common/ExtraZeroSamplesFilter.o ./pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.o ./pwiz/utility/minimxml/SAXParser.o ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.o ./pwiz/data/identdata/IdentDataFile.o ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.o ./pwiz/data/msdata/Serializer_mzML.o ./pwiz/data/identdata/Pep2MzIdent.o ./pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.o ./pwiz/analysis/passive/RegionSIC.o ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.o ./pwiz/analysis/passive/RunSummary.o ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.o .libs/libpwiz.lax/lt18-References.o ./pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.o ./pwiz/analysis/common/ZeroSampleFiller.o ./pwiz/utility/misc/MSIHandler.o ./pwiz/data/msdata/LegacyAdapter.o ./pwiz/data/msdata/MSDataMerger.o ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.o ./pwiz/data/proteome/ProteomeData.o ./pwiz/analysis/common/LocalMaximumPeakDetector.o ./pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.o ./pwiz/analysis/passive/MSDataAnalyzer.o ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.o ./pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.o ./pwiz/utility/math/Parabola.o ./pwiz/data/msdata/Serializer_MGF.o ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.o ./pwiz/data/vendor_readers/ABI/Reader_ABI.o ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.o ./pwiz/data/common/BinaryIndexStream.o ./pwiz/analysis/passive/SpectrumBinaryData.o ./pwiz/data/common/obo.o ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.o ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.o ./pwiz/utility/chemistry/IsotopeTable.o ./pwiz/analysis/demux/DemuxHelpers.o ./libraries/libsvm-3.0/svm.o ./pwiz/analysis/demux/SpectrumPeakExtractor.o ./pwiz/data/msdata/SpectrumList_mzXML.o ./pwiz/data/common/ParamTypes.o pwiz/data/tradata/Serializer_traML.o ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.o .libs/libpwiz.lax/lt19-DefaultReaderList.o ./pwiz/data/misc/PeakData.o ./pwiz/analysis/passive/TabularConfig.o ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.o ./pwiz/analysis/chromatogram_processing/ChromatogramListFactory.o ./pwiz/analysis/frequency/MagnitudeLorentzian.o ./pwiz/data/proteome/Peptide.o ./pwiz/data/msdata/SpectrumList_mzML.o ./pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.o .libs/libpwiz.lax/lt20-Reader.o ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.o ./pwiz/utility/misc/Filesystem.o ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.o ./pwiz/analysis/frequency/TruncatedLorentzianParameters.o ./pwiz/utility/misc/random_access_compressed_ifstream.o ./pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.o ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.o pwiz/data/tradata/TraDataFile.o ./pwiz/data/proteome/ProteomeDataFile.o ./pwiz/data/identdata/KwCVMap.o ./pwiz/data/identdata/Serializer_mzid.o .libs/libpwiz.lax/lt21-References.o ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.o ./pwiz/data/msdata/SpectrumIterator.o libtool: link: x86_64-linux-gnu-ranlib .libs/libpwiz.a libtool: link: rm -fr .libs/libpwiz.lax libtool: link: ( cd ".libs" && rm -f "libpwiz.la" && ln -s "../libpwiz.la" "libpwiz.la" ) /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o txt2mzml ./pwiz_tools/examples/txt2mzml.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/txt2mzml ./pwiz_tools/examples/txt2mzml.o -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/commandline/msconvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/commandline/msconvert.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/commandline/msconvert.o pwiz_tools/commandline/msconvert.cpp &&\ mv -f $depbase.Tpo $depbase.Po pwiz_tools/commandline/msconvert.cpp:444:32: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 444 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp:444:51: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 444 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp:967:31: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 967 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp:967:50: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 967 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o msconvert pwiz_tools/commandline/msconvert.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/msconvert pwiz_tools/commandline/msconvert.o -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/mscat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/mscat.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/mscat.o pwiz_tools/examples/mscat.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o mscat ./pwiz_tools/examples/mscat.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mscat ./pwiz_tools/examples/mscat.o -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/hello_analyzer_2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" 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"/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/hello_analyzer_2.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/hello_analyzer_2.o pwiz_tools/examples/hello_analyzer_2.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hello_analyzer_2 ./pwiz_tools/examples/hello_analyzer_2.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/hello_analyzer_2 ./pwiz_tools/examples/hello_analyzer_2.o -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/commandline/idconvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 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reproducible builds [-Wdate-time] 543 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/idconvert.cpp:543:50: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 543 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o idconvert pwiz_tools/commandline/idconvert.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/idconvert pwiz_tools/commandline/idconvert.o -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/write_example_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/write_example_files.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/write_example_files.o pwiz_tools/examples/write_example_files.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o write_example_files ./pwiz_tools/examples/write_example_files.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/write_example_files ./pwiz_tools/examples/write_example_files.o -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/hello_msdata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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-lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/commandline/pepcat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/commandline/pepcat.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/commandline/pepcat.o pwiz_tools/commandline/pepcat.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o pepcat pwiz_tools/commandline/pepcat.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/pepcat pwiz_tools/commandline/pepcat.o -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/write_traml_example_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/write_traml_example_files.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/write_traml_example_files.o pwiz_tools/examples/write_traml_example_files.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o write_traml_example_files ./pwiz_tools/examples/write_traml_example_files.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/write_traml_example_files ./pwiz_tools/examples/write_traml_example_files.o -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread make[1]: Leaving directory '/<>/debian/build' make[1]: Entering directory '/<>/debian/build' make[2]: Entering directory '/<>/debian/build' /usr/bin/mkdir -p '/<>/debian/build/usr/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c libpwiz.la '/<>/debian/build/usr/lib' libtool: install: /usr/bin/install -c .libs/libpwiz.so.3.0.0 /<>/debian/build/usr/lib/libpwiz.so.3.0.0 libtool: install: (cd /<>/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so.3 || { rm -f libpwiz.so.3 && ln -s libpwiz.so.3.0.0 libpwiz.so.3; }; }) libtool: install: (cd /<>/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so || { rm -f libpwiz.so && ln -s libpwiz.so.3.0.0 libpwiz.so; }; }) libtool: install: /usr/bin/install -c .libs/libpwiz.lai /<>/debian/build/usr/lib/libpwiz.la libtool: install: /usr/bin/install -c .libs/libpwiz.a /<>/debian/build/usr/lib/libpwiz.a libtool: install: chmod 644 /<>/debian/build/usr/lib/libpwiz.a libtool: install: x86_64-linux-gnu-ranlib /<>/debian/build/usr/lib/libpwiz.a libtool: warning: remember to run 'libtool --finish /usr/lib' /usr/bin/mkdir -p '/<>/debian/build/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c txt2mzml msconvert mscat hello_analyzer_2 idconvert write_example_files hello_msdata write_mzid_example_files hello_analyzer write_proteome_example_files pepcat write_traml_example_files '/<>/debian/build/usr/bin' libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/txt2mzml /<>/debian/build/usr/bin/txt2mzml libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/msconvert /<>/debian/build/usr/bin/msconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/mscat /<>/debian/build/usr/bin/mscat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer_2 /<>/debian/build/usr/bin/hello_analyzer_2 libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/idconvert /<>/debian/build/usr/bin/idconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_example_files /<>/debian/build/usr/bin/write_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_msdata /<>/debian/build/usr/bin/hello_msdata libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_mzid_example_files /<>/debian/build/usr/bin/write_mzid_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer /<>/debian/build/usr/bin/hello_analyzer libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_proteome_example_files /<>/debian/build/usr/bin/write_proteome_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/pepcat /<>/debian/build/usr/bin/pepcat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_traml_example_files /<>/debian/build/usr/bin/write_traml_example_files make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/<>/debian/build' make[1]: Leaving directory '/<>/debian/build' Removing the RPATH datum from the binaries. sh debian/remove-rpath-from-binaries.sh /<> sh debian/make-included-headers-hierarchy.sh debian/build/pwiz_tools/common/FullReaderList.hpp debian/build/pwiz_tools/common/MSDataAnalyzerApplication.hpp debian/build/libraries/libsvm-3.0/svm.h debian/build/libraries/boost_aux/boost/enum.hpp debian/build/libraries/boost_aux/boost/enum/iterator.hpp debian/build/libraries/boost_aux/boost/enum/macros.hpp debian/build/libraries/boost_aux/boost/enum/base.hpp debian/build/libraries/boost_aux/boost/enum/bitfield.hpp debian/build/libraries/boost_aux/boost/foreach_field.hpp debian/build/libraries/boost_aux/boost/utility/mutexed_singleton.hpp debian/build/libraries/boost_aux/boost/utility/thread_specific_singleton.hpp debian/build/libraries/boost_aux/boost/utility/singleton.hpp debian/build/libraries/boost_aux/boost/utility/detail/restricted.hpp debian/build/libraries/boost_aux/boost/utility/detail/singleton_manager.hpp debian/build/libraries/boost_aux/boost/utility/detail/member_dereference.hpp debian/build/libraries/boost_aux/boost/iostreams/arbitrary_positional_facade.hpp debian/build/libraries/boost_aux/boost/iostreams/filter/base64.hpp debian/build/libraries/boost_aux/boost/nowide/windows.hpp debian/build/libraries/boost_aux/boost/nowide/config.hpp debian/build/libraries/boost_aux/boost/nowide/iostream.hpp debian/build/libraries/boost_aux/boost/nowide/convert.hpp debian/build/libraries/boost_aux/boost/nowide/cstdio.hpp debian/build/libraries/boost_aux/boost/nowide/stackstring.hpp debian/build/libraries/boost_aux/boost/nowide/cenv.hpp debian/build/libraries/boost_aux/boost/nowide/fstream.hpp debian/build/libraries/boost_aux/boost/nowide/system.hpp debian/build/libraries/boost_aux/boost/nowide/cstdlib.hpp debian/build/libraries/boost_aux/boost/nowide/args.hpp debian/build/libraries/boost_aux/boost/nowide/filebuf.hpp debian/build/libraries/boost_aux/tools/bcp/bcp.hpp debian/build/libraries/boost_aux/tools/bcp/licence_info.hpp debian/build/libraries/boost_aux/tools/bcp/fileview.hpp debian/build/libraries/boost_aux/tools/bcp/bcp_imp.hpp debian/build/libraries/doctest.h debian/build/libraries/CSpline/CSpline.h debian/build/libraries/Eigen/nnls.h debian/build/pwiz/data/common/diff_std.hpp debian/build/pwiz/data/common/MemoryIndex.hpp debian/build/pwiz/data/common/Index.hpp debian/build/pwiz/data/common/Unimod.hpp debian/build/pwiz/data/common/BinaryIndexStream.hpp debian/build/pwiz/data/common/obo.hpp debian/build/pwiz/data/common/CVTranslator.hpp debian/build/pwiz/data/common/ParamTypes.hpp debian/build/pwiz/data/common/cv.hpp debian/build/pwiz/data/tradata/TraDataFile.hpp debian/build/pwiz/data/tradata/examples.hpp debian/build/pwiz/data/tradata/Reader.hpp debian/build/pwiz/data/tradata/TraData.hpp debian/build/pwiz/data/tradata/IO.hpp debian/build/pwiz/data/tradata/References.hpp debian/build/pwiz/data/tradata/Diff.hpp debian/build/pwiz/data/tradata/Serializer_traML.hpp debian/build/pwiz/data/tradata/TextWriter.hpp debian/build/pwiz/data/tradata/DefaultReaderList.hpp debian/build/pwiz/data/tradata/Version.hpp debian/build/pwiz/data/proteome/examples.hpp debian/build/pwiz/data/proteome/ProteinListWrapper.hpp debian/build/pwiz/data/proteome/Reader.hpp debian/build/pwiz/data/proteome/Serializer_FASTA.hpp debian/build/pwiz/data/proteome/AminoAcid.hpp debian/build/pwiz/data/proteome/ProteomeData.hpp debian/build/pwiz/data/proteome/Digestion.hpp debian/build/pwiz/data/proteome/ProteinListCache.hpp debian/build/pwiz/data/proteome/ProteomeDataFile.hpp debian/build/pwiz/data/proteome/Peptide.hpp debian/build/pwiz/data/proteome/Modification.hpp debian/build/pwiz/data/proteome/Reader_FASTA.hpp debian/build/pwiz/data/proteome/Diff.hpp debian/build/pwiz/data/proteome/TextWriter.hpp debian/build/pwiz/data/proteome/DefaultReaderList.hpp debian/build/pwiz/data/proteome/Version.hpp debian/build/pwiz/data/identdata/examples.hpp debian/build/pwiz/data/identdata/Reader.hpp debian/build/pwiz/data/identdata/KwCVMap.hpp debian/build/pwiz/data/identdata/IdentDataFile.hpp debian/build/pwiz/data/identdata/Serializer_pepXML.hpp debian/build/pwiz/data/identdata/Serializer_Text.hpp debian/build/pwiz/data/identdata/IdentData.hpp debian/build/pwiz/data/identdata/DelimWriter.hpp debian/build/pwiz/data/identdata/MzidPredicates.hpp debian/build/pwiz/data/identdata/Serializer_protXML.hpp debian/build/pwiz/data/identdata/IO.hpp debian/build/pwiz/data/identdata/References.hpp debian/build/pwiz/data/identdata/Diff.hpp debian/build/pwiz/data/identdata/MascotReader.hpp debian/build/pwiz/data/identdata/Serializer_mzid.hpp debian/build/pwiz/data/identdata/Pep2MzIdent.hpp debian/build/pwiz/data/identdata/TextWriter.hpp debian/build/pwiz/data/identdata/DefaultReaderList.hpp debian/build/pwiz/data/identdata/DelimReader.hpp debian/build/pwiz/data/identdata/Version.hpp debian/build/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp debian/build/pwiz/data/vendor_readers/ExtendedReaderList.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp debian/build/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp debian/build/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp debian/build/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp debian/build/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp debian/build/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp debian/build/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp debian/build/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp debian/build/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp debian/build/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp debian/build/pwiz/data/msdata/MSNumpress.hpp debian/build/pwiz/data/msdata/examples.hpp debian/build/pwiz/data/msdata/MSData.hpp debian/build/pwiz/data/msdata/Serializer_MGF.hpp debian/build/pwiz/data/msdata/SpectrumList_BTDX.hpp debian/build/pwiz/data/msdata/Index_mzML.hpp debian/build/pwiz/data/msdata/Reader.hpp debian/build/pwiz/data/msdata/ChromatogramListBase.hpp debian/build/pwiz/data/msdata/SpectrumListWrapper.hpp debian/build/pwiz/data/msdata/Serializer_mzXML.hpp debian/build/pwiz/data/msdata/SpectrumList_mzML.hpp debian/build/pwiz/data/msdata/SpectrumListBase.hpp debian/build/pwiz/data/msdata/LegacyAdapter.hpp debian/build/pwiz/data/msdata/SpectrumIterator.hpp debian/build/pwiz/data/msdata/Serializer_MSn.hpp debian/build/pwiz/data/msdata/IO.hpp debian/build/pwiz/data/msdata/BinaryDataEncoder.hpp debian/build/pwiz/data/msdata/References.hpp debian/build/pwiz/data/msdata/SpectrumListCache.hpp debian/build/pwiz/data/msdata/ChromatogramList_mzML.hpp debian/build/pwiz/data/msdata/SHA1OutputObserver.hpp debian/build/pwiz/data/msdata/Diff.hpp debian/build/pwiz/data/msdata/MSDataFile.hpp debian/build/pwiz/data/msdata/MSDataMerger.hpp debian/build/pwiz/data/msdata/SpectrumWorkerThreads.hpp debian/build/pwiz/data/msdata/SpectrumList_MSn.hpp debian/build/pwiz/data/msdata/MemoryMRUCache.hpp debian/build/pwiz/data/msdata/SpectrumList_MGF.hpp debian/build/pwiz/data/msdata/TextWriter.hpp debian/build/pwiz/data/msdata/SpectrumList_mzXML.hpp debian/build/pwiz/data/msdata/DefaultReaderList.hpp debian/build/pwiz/data/msdata/Serializer_mzML.hpp debian/build/pwiz/data/msdata/SpectrumInfo.hpp debian/build/pwiz/data/msdata/Version.hpp debian/build/pwiz/data/misc/FrequencyDataTestData.hpp debian/build/pwiz/data/misc/SampleDatum.hpp debian/build/pwiz/data/misc/MinimumPepXML.hpp debian/build/pwiz/data/misc/CalibrationParameters.hpp debian/build/pwiz/data/misc/PeakData.hpp debian/build/pwiz/data/misc/FrequencyData.hpp debian/build/pwiz/utility/math/Stats.hpp debian/build/pwiz/utility/math/LinearSolver.hpp debian/build/pwiz/utility/math/qr.hpp debian/build/pwiz/utility/math/OrderedPair.hpp debian/build/pwiz/utility/math/LinearLeastSquares.hpp debian/build/pwiz/utility/math/round.hpp debian/build/pwiz/utility/math/MatchedFilter.hpp debian/build/pwiz/utility/math/erf.hpp debian/build/pwiz/utility/math/HouseholderQR.hpp debian/build/pwiz/utility/math/Parabola.hpp debian/build/pwiz/utility/math/MatrixInverse.hpp debian/build/pwiz/utility/math/Types.hpp debian/build/pwiz/utility/findmf/base/ms/simplepicker.hpp debian/build/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/gauss.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp debian/build/pwiz/utility/findmf/base/filter/gaussfilter.hpp debian/build/pwiz/utility/findmf/base/filter/filter.hpp debian/build/pwiz/utility/findmf/base/base/cumsum.hpp debian/build/pwiz/utility/findmf/base/base/scale.hpp debian/build/pwiz/utility/findmf/base/base/interpolate.hpp debian/build/pwiz/utility/findmf/base/base/constants.hpp debian/build/pwiz/utility/findmf/base/base/utilities/interpolation.hpp debian/build/pwiz/utility/findmf/base/base/utilities/base.hpp debian/build/pwiz/utility/findmf/base/base/base.hpp debian/build/pwiz/utility/findmf/base/base/diff.hpp debian/build/pwiz/utility/findmf/base/base/copyif.hpp debian/build/pwiz/utility/findmf/base/resample/bucket1d.hpp debian/build/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/convert2dense.hpp debian/build/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp debian/build/pwiz/utility/findmf/base/resample/breakspec.hpp debian/build/pwiz/utility/findmf/base/resample/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/bin1d.hpp debian/build/pwiz/utility/proteome/IPIFASTADatabase.hpp debian/build/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp debian/build/pwiz/utility/chemistry/IsotopeTable.hpp debian/build/pwiz/utility/chemistry/Chemistry.hpp debian/build/pwiz/utility/chemistry/MZTolerance.hpp debian/build/pwiz/utility/chemistry/IsotopeCalculator.hpp debian/build/pwiz/utility/chemistry/Ion.hpp debian/build/pwiz/utility/chemistry/ChemistryData.hpp debian/build/pwiz/utility/minimxml/SAXParser.hpp debian/build/pwiz/utility/minimxml/XMLWriter.hpp debian/build/pwiz/utility/misc/VendorReaderTestHarness.hpp debian/build/pwiz/utility/misc/MSIHandler.hpp debian/build/pwiz/utility/misc/String.hpp debian/build/pwiz/utility/misc/Base64.hpp debian/build/pwiz/utility/misc/Stream.hpp debian/build/pwiz/utility/misc/Export.hpp debian/build/pwiz/utility/misc/Container.hpp debian/build/pwiz/utility/misc/BinaryData.hpp debian/build/pwiz/utility/misc/virtual_map.hpp debian/build/pwiz/utility/misc/Environment.hpp debian/build/pwiz/utility/misc/DateTime.hpp debian/build/pwiz/utility/misc/ClickwrapPrompter.hpp debian/build/pwiz/utility/misc/Exception.hpp debian/build/pwiz/utility/misc/endian.hpp debian/build/pwiz/utility/misc/Singleton.hpp debian/build/pwiz/utility/misc/almost_equal.hpp debian/build/pwiz/utility/misc/SHA1.h debian/build/pwiz/utility/misc/IterationListener.hpp debian/build/pwiz/utility/misc/CharIndexedVector.hpp debian/build/pwiz/utility/misc/IntegerSet.hpp debian/build/pwiz/utility/misc/Once.hpp debian/build/pwiz/utility/misc/SHA1_ostream.hpp debian/build/pwiz/utility/misc/Std.hpp debian/build/pwiz/utility/misc/Image.hpp debian/build/pwiz/utility/misc/shared_map.hpp debian/build/pwiz/utility/misc/mru_list.hpp debian/build/pwiz/utility/misc/optimized_lexical_cast.hpp debian/build/pwiz/utility/misc/random_access_compressed_ifstream.hpp debian/build/pwiz/utility/misc/unit.hpp debian/build/pwiz/utility/misc/Timer.hpp debian/build/pwiz/utility/misc/SHA1Calculator.hpp debian/build/pwiz/utility/misc/cpp_cli_utilities.hpp debian/build/pwiz/utility/misc/pinned_gcroot.h debian/build/pwiz/utility/misc/TabReader.hpp debian/build/pwiz/utility/misc/Filesystem.hpp debian/build/pwiz/analysis/common/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/common/DataFilter.hpp debian/build/pwiz/analysis/common/PeakDetector.hpp debian/build/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp debian/build/pwiz/analysis/common/CwtPeakDetector.hpp debian/build/pwiz/analysis/common/WhittakerSmoother.hpp debian/build/pwiz/analysis/common/Smoother.hpp debian/build/pwiz/analysis/common/LocalMaximumPeakDetector.hpp debian/build/pwiz/analysis/common/ZeroSampleFiller.hpp debian/build/pwiz/analysis/peptideid/PeptideID_pepXML.hpp debian/build/pwiz/analysis/peptideid/PeptideID.hpp debian/build/pwiz/analysis/peptideid/PeptideID_flat.hpp debian/build/pwiz/analysis/peptideid/PeptideIDMap.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp debian/build/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp debian/build/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp debian/build/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp debian/build/pwiz/analysis/demux/IInterpolation.hpp debian/build/pwiz/analysis/demux/DemuxDebugReader.hpp debian/build/pwiz/analysis/demux/OverlapDemultiplexer.hpp debian/build/pwiz/analysis/demux/DemuxHelpers.hpp debian/build/pwiz/analysis/demux/EnumConstantNotPresentException.hpp debian/build/pwiz/analysis/demux/PrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/CubicHermiteSpline.hpp debian/build/pwiz/analysis/demux/IPrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/DemuxSolver.hpp debian/build/pwiz/analysis/demux/IDemultiplexer.hpp debian/build/pwiz/analysis/demux/MSXDemultiplexer.hpp debian/build/pwiz/analysis/demux/DemuxDebugWriter.hpp debian/build/pwiz/analysis/demux/SpectrumPeakExtractor.hpp debian/build/pwiz/analysis/demux/DemuxTypes.hpp debian/build/pwiz/analysis/demux/MatrixIO.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp debian/build/pwiz/analysis/peakdetect/FeatureModeler.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetector.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp debian/build/pwiz/analysis/peakdetect/PeakFinder.hpp debian/build/pwiz/analysis/peakdetect/MZRTField.hpp debian/build/pwiz/analysis/peakdetect/PeakExtractor.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp debian/build/pwiz/analysis/peakdetect/Noise.hpp debian/build/pwiz/analysis/peakdetect/PeakelGrower.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp debian/build/pwiz/analysis/peakdetect/PeakFitter.hpp debian/build/pwiz/analysis/peakdetect/PeakelPicker.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp debian/build/pwiz/analysis/proteome_processing/ProteinListFactory.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp debian/build/pwiz/analysis/passive/RegionTIC.hpp debian/build/pwiz/analysis/passive/MSDataCache.hpp debian/build/pwiz/analysis/passive/MetadataReporter.hpp debian/build/pwiz/analysis/passive/MSDataAnalyzer.hpp debian/build/pwiz/analysis/passive/RegionSlice.hpp debian/build/pwiz/analysis/passive/RunSummary.hpp debian/build/pwiz/analysis/passive/RegionSIC.hpp debian/build/pwiz/analysis/passive/TabularConfig.hpp debian/build/pwiz/analysis/passive/PepXMLCat.hpp debian/build/pwiz/analysis/passive/RegionAnalyzer.hpp debian/build/pwiz/analysis/passive/SpectrumBinaryData.hpp debian/build/pwiz/analysis/passive/SpectrumTable.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp debian/build/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzian.hpp debian/build/pwiz/analysis/frequency/PeakDetector.hpp debian/build/pwiz/analysis/frequency/PeakDetectorNaive.hpp debian/build/pwiz/analysis/frequency/ParameterEstimator.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzian.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimator.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp debian/build/pwiz/analysis/frequency/ParametrizedFunction.hpp debian/build/pwiz/analysis/frequency/DerivativeTest.hpp debian/build/pwiz/analysis/Version.hpp debian/build/pwiz/Version.hpp doc/dox/mainpage.hpp .pc/gcc-boost-fail-cast-tribool-to-bool-force-it.patch/pwiz/data/identdata/TextWriter.hpp docbook-to-man debian/msconvert.sgml > debian/msconvert.1 docbook-to-man debian/idconvert.sgml > debian/idconvert.1 docbook-to-man debian/mscat.sgml > debian/mscat.1 docbook-to-man debian/txt2mzml.sgml > debian/txt2mzml.1 touch build-arch-stamp entering the build-indep-stamp target cd doc/dox && doxygen warning: Tag 'USE_WINDOWS_ENCODING' at line 11 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DETAILS_AT_TOP' at line 33 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 70 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 119 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 130 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 177 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 178 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 210 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MAX_DOT_GRAPH_WIDTH' at line 231 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MAX_DOT_GRAPH_HEIGHT' at line 232 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! Doxygen version used: 1.9.1 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/pwiz Searching for files in directory /<>/pwiz/analysis Searching for files in directory /<>/pwiz/analysis/chromatogram_processing Searching for files in directory /<>/pwiz/analysis/common Searching for files in directory /<>/pwiz/analysis/demux Searching for files in directory /<>/pwiz/analysis/frequency Searching for files in directory /<>/pwiz/analysis/passive Searching for files in directory /<>/pwiz/analysis/peakdetect Searching for files in directory /<>/pwiz/analysis/peptideid Searching for files in directory /<>/pwiz/analysis/proteome_processing Searching for files in directory /<>/pwiz/analysis/spectrum_processing Searching for files in directory /<>/pwiz/data Searching for files in directory /<>/pwiz/data/common Searching for files in directory /<>/pwiz/data/identdata Searching for files in directory /<>/pwiz/data/misc Searching for files in directory /<>/pwiz/data/msdata Searching for files in directory /<>/pwiz/data/proteome Searching for files in directory /<>/pwiz/data/tradata Searching for files in directory /<>/pwiz/data/vendor_readers Searching for files in directory /<>/pwiz/data/vendor_readers/ABI Searching for files in directory /<>/pwiz/data/vendor_readers/ABI/T2D Searching for files in directory /<>/pwiz/data/vendor_readers/Agilent Searching for files in directory /<>/pwiz/data/vendor_readers/Bruker Searching for files in directory /<>/pwiz/data/vendor_readers/Shimadzu Searching for files in directory /<>/pwiz/data/vendor_readers/Thermo Searching for files in directory /<>/pwiz/data/vendor_readers/UIMF Searching for files in directory /<>/pwiz/data/vendor_readers/UNIFI Searching for files in directory /<>/pwiz/data/vendor_readers/Waters Searching for files in directory /<>/pwiz/utility Searching for files in directory /<>/pwiz/utility/chemistry Searching for files in directory /<>/pwiz/utility/findmf Searching for files in directory /<>/pwiz/utility/findmf/base Searching for files in directory /<>/pwiz/utility/findmf/base/base Searching for files in directory /<>/pwiz/utility/findmf/base/base/utilities Searching for files in directory /<>/pwiz/utility/findmf/base/filter Searching for files in directory /<>/pwiz/utility/findmf/base/filter/utilities Searching for files in directory /<>/pwiz/utility/findmf/base/ms Searching for files in directory /<>/pwiz/utility/findmf/base/resample Searching for files in directory /<>/pwiz/utility/findmf/base/resample/utilities Searching for files in directory /<>/pwiz/utility/math Searching for files in directory /<>/pwiz/utility/minimxml Searching for files in directory /<>/pwiz/utility/misc Searching for files in directory /<>/pwiz/utility/proteome Searching for files in directory /<>/doc/dox Reading and parsing tag files Parsing files Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_FilterTest.cpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_FilterTest.cpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefinerTest.cpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefinerTest.cpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramListFactoryTest.cpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListFactoryTest.cpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramListWrapperTest.cpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListWrapperTest.cpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmootherTest.cpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmootherTest.cpp... Preprocessing /<>/pwiz/analysis/common/CwtPeakDetector.hpp... Parsing file /<>/pwiz/analysis/common/CwtPeakDetector.hpp... Preprocessing /<>/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Parsing file /<>/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Preprocessing /<>/pwiz/analysis/common/DataFilter.hpp... Parsing file /<>/pwiz/analysis/common/DataFilter.hpp... Preprocessing /<>/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Parsing file /<>/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Preprocessing /<>/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Parsing file /<>/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Preprocessing /<>/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Parsing file /<>/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Preprocessing /<>/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Parsing file /<>/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Preprocessing /<>/pwiz/analysis/common/PeakDetector.hpp... Parsing file /<>/pwiz/analysis/common/PeakDetector.hpp... Preprocessing /<>/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Parsing file /<>/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Preprocessing /<>/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Parsing file /<>/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Preprocessing /<>/pwiz/analysis/common/Smoother.hpp... Parsing file /<>/pwiz/analysis/common/Smoother.hpp... Preprocessing /<>/pwiz/analysis/common/WhittakerSmoother.hpp... Parsing file /<>/pwiz/analysis/common/WhittakerSmoother.hpp... Preprocessing /<>/pwiz/analysis/common/WhittakerSmootherTest.cpp... Parsing file /<>/pwiz/analysis/common/WhittakerSmootherTest.cpp... Preprocessing /<>/pwiz/analysis/common/ZeroSampleFiller.hpp... Parsing file /<>/pwiz/analysis/common/ZeroSampleFiller.hpp... Preprocessing /<>/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Parsing file /<>/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Preprocessing /<>/pwiz/analysis/demux/CubicHermiteSpline.hpp... Parsing file /<>/pwiz/analysis/demux/CubicHermiteSpline.hpp... Preprocessing /<>/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Parsing file /<>/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxDebugReader.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxDebugReader.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp... Parsing file /<>/pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxDebugWriter.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxDebugWriter.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxHelpers.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxHelpers.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxHelpersTest.cpp... Parsing file /<>/pwiz/analysis/demux/DemuxHelpersTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxSolver.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxSolver.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxSolverTest.cpp... Parsing file /<>/pwiz/analysis/demux/DemuxSolverTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxTypes.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxTypes.hpp... Preprocessing /<>/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Parsing file /<>/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Preprocessing /<>/pwiz/analysis/demux/IDemultiplexer.hpp... Parsing file /<>/pwiz/analysis/demux/IDemultiplexer.hpp... Preprocessing /<>/pwiz/analysis/demux/IInterpolation.hpp... Parsing file /<>/pwiz/analysis/demux/IInterpolation.hpp... Preprocessing /<>/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Parsing file /<>/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Preprocessing /<>/pwiz/analysis/demux/MatrixIO.hpp... Parsing file /<>/pwiz/analysis/demux/MatrixIO.hpp... Preprocessing /<>/pwiz/analysis/demux/MatrixIOTest.cpp... Parsing file /<>/pwiz/analysis/demux/MatrixIOTest.cpp... Preprocessing /<>/pwiz/analysis/demux/MSXDemultiplexer.hpp... Parsing file /<>/pwiz/analysis/demux/MSXDemultiplexer.hpp... Preprocessing /<>/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Parsing file /<>/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Preprocessing /<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Parsing file /<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Preprocessing /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Parsing file /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Preprocessing /<>/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Parsing file /<>/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/DerivativeTest.hpp... Parsing file /<>/pwiz/analysis/frequency/DerivativeTest.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimator.hpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimator.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Parsing file /<>/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Preprocessing /<>/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Parsing file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Parsing file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Preprocessing /<>/pwiz/analysis/frequency/ParameterEstimator.hpp... Parsing file /<>/pwiz/analysis/frequency/ParameterEstimator.hpp... Preprocessing /<>/pwiz/analysis/frequency/ParametrizedFunction.hpp... Parsing file /<>/pwiz/analysis/frequency/ParametrizedFunction.hpp... Preprocessing /<>/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... Parsing file /<>/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetector.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetector.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorNaive.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorNaive.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianTest.cpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianTest.cpp... Preprocessing /<>/pwiz/analysis/passive/MetadataReporter.hpp... Parsing file /<>/pwiz/analysis/passive/MetadataReporter.hpp... Preprocessing /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp... Parsing file /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp... Preprocessing /<>/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Parsing file /<>/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Preprocessing /<>/pwiz/analysis/passive/MSDataCache.hpp... Parsing file /<>/pwiz/analysis/passive/MSDataCache.hpp... Preprocessing /<>/pwiz/analysis/passive/MSDataCacheTest.cpp... Parsing file /<>/pwiz/analysis/passive/MSDataCacheTest.cpp... Preprocessing /<>/pwiz/analysis/passive/PepXMLCat.hpp... Parsing file /<>/pwiz/analysis/passive/PepXMLCat.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionAnalyzer.hpp... Parsing file /<>/pwiz/analysis/passive/RegionAnalyzer.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionSIC.hpp... Parsing file /<>/pwiz/analysis/passive/RegionSIC.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionSlice.hpp... Parsing file /<>/pwiz/analysis/passive/RegionSlice.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionTIC.hpp... Parsing file /<>/pwiz/analysis/passive/RegionTIC.hpp... Preprocessing /<>/pwiz/analysis/passive/RunSummary.hpp... Parsing file /<>/pwiz/analysis/passive/RunSummary.hpp... Preprocessing /<>/pwiz/analysis/passive/SpectrumBinaryData.hpp... Parsing file /<>/pwiz/analysis/passive/SpectrumBinaryData.hpp... Preprocessing /<>/pwiz/analysis/passive/SpectrumTable.hpp... Parsing file /<>/pwiz/analysis/passive/SpectrumTable.hpp... Preprocessing /<>/pwiz/analysis/passive/TabularConfig.hpp... Parsing file /<>/pwiz/analysis/passive/TabularConfig.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Parsing file /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/Noise.hpp... Parsing file /<>/pwiz/analysis/peakdetect/Noise.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Preprocessing /<>/pwiz/analysis/Version.hpp... Parsing file /<>/pwiz/analysis/Version.hpp... Preprocessing /<>/pwiz/data/common/BinaryIndexStream.hpp... Parsing file /<>/pwiz/data/common/BinaryIndexStream.hpp... Preprocessing /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Parsing file /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Preprocessing /<>/pwiz/data/common/cv.hpp... Parsing file /<>/pwiz/data/common/cv.hpp... Preprocessing /<>/pwiz/data/common/cvtest.cpp... Parsing file /<>/pwiz/data/common/cvtest.cpp... Preprocessing /<>/pwiz/data/common/CVTranslator.hpp... Parsing file /<>/pwiz/data/common/CVTranslator.hpp... Preprocessing /<>/pwiz/data/common/CVTranslatorTest.cpp... Parsing file /<>/pwiz/data/common/CVTranslatorTest.cpp... Preprocessing /<>/pwiz/data/common/diff_std.hpp... Parsing file /<>/pwiz/data/common/diff_std.hpp... Preprocessing /<>/pwiz/data/common/diff_std_test.cpp... Parsing file /<>/pwiz/data/common/diff_std_test.cpp... Preprocessing /<>/pwiz/data/common/Index.hpp... Parsing file /<>/pwiz/data/common/Index.hpp... Preprocessing /<>/pwiz/data/common/MemoryIndex.hpp... Parsing file /<>/pwiz/data/common/MemoryIndex.hpp... Preprocessing /<>/pwiz/data/common/MemoryIndexTest.cpp... Parsing file /<>/pwiz/data/common/MemoryIndexTest.cpp... Preprocessing /<>/pwiz/data/common/obo.hpp... Parsing file /<>/pwiz/data/common/obo.hpp... Preprocessing /<>/pwiz/data/common/obotest.cpp... Parsing file /<>/pwiz/data/common/obotest.cpp... Preprocessing /<>/pwiz/data/common/ParamTypes.hpp... Parsing file /<>/pwiz/data/common/ParamTypes.hpp... Preprocessing /<>/pwiz/data/common/ParamTypesTest.cpp... Parsing file /<>/pwiz/data/common/ParamTypesTest.cpp... Preprocessing /<>/pwiz/data/common/Unimod.hpp... Parsing file /<>/pwiz/data/common/Unimod.hpp... Preprocessing /<>/pwiz/data/common/UnimodTest.cpp... Parsing file /<>/pwiz/data/common/UnimodTest.cpp... Preprocessing /<>/pwiz/data/identdata/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/identdata/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/identdata/DelimReader.hpp... Parsing file /<>/pwiz/data/identdata/DelimReader.hpp... Preprocessing /<>/pwiz/data/identdata/DelimWriter.hpp... Parsing file /<>/pwiz/data/identdata/DelimWriter.hpp... Preprocessing /<>/pwiz/data/identdata/Diff.hpp... Parsing file /<>/pwiz/data/identdata/Diff.hpp... Preprocessing /<>/pwiz/data/identdata/DiffTest.cpp... Parsing file /<>/pwiz/data/identdata/DiffTest.cpp... Preprocessing /<>/pwiz/data/identdata/examples.hpp... Parsing file /<>/pwiz/data/identdata/examples.hpp... Preprocessing /<>/pwiz/data/identdata/ExtendedReadTest.cpp... Parsing file /<>/pwiz/data/identdata/ExtendedReadTest.cpp... Preprocessing /<>/pwiz/data/identdata/IdentData.hpp... Parsing file /<>/pwiz/data/identdata/IdentData.hpp... Preprocessing /<>/pwiz/data/identdata/IdentDataFile.hpp... Parsing file /<>/pwiz/data/identdata/IdentDataFile.hpp... Preprocessing /<>/pwiz/data/identdata/IdentDataTest.cpp... Parsing file /<>/pwiz/data/identdata/IdentDataTest.cpp... Preprocessing /<>/pwiz/data/identdata/IO.hpp... Parsing file /<>/pwiz/data/identdata/IO.hpp... Preprocessing /<>/pwiz/data/identdata/IOTest.cpp... Parsing file /<>/pwiz/data/identdata/IOTest.cpp... Preprocessing /<>/pwiz/data/identdata/KwCVMap.hpp... Parsing file /<>/pwiz/data/identdata/KwCVMap.hpp... Preprocessing /<>/pwiz/data/identdata/KwCVMapTest.cpp... Parsing file /<>/pwiz/data/identdata/KwCVMapTest.cpp... Preprocessing /<>/pwiz/data/identdata/MascotReader.hpp... Parsing file /<>/pwiz/data/identdata/MascotReader.hpp... Preprocessing /<>/pwiz/data/identdata/MzidPredicates.hpp... Parsing file /<>/pwiz/data/identdata/MzidPredicates.hpp... Preprocessing /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Parsing file /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Preprocessing /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Parsing file /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Preprocessing /<>/pwiz/data/identdata/Reader.hpp... Parsing file /<>/pwiz/data/identdata/Reader.hpp... Preprocessing /<>/pwiz/data/identdata/ReaderTest.cpp... Parsing file /<>/pwiz/data/identdata/ReaderTest.cpp... Preprocessing /<>/pwiz/data/identdata/References.hpp... Parsing file /<>/pwiz/data/identdata/References.hpp... Preprocessing /<>/pwiz/data/identdata/ReferencesTest.cpp... Parsing file /<>/pwiz/data/identdata/ReferencesTest.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_mzid.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_mzid.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_mzid_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_mzid_Test.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_pepXML.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_pepXML.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_protXML.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_protXML.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_protXML_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_protXML_Test.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_Text.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_Text.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Preprocessing /<>/pwiz/data/identdata/TextWriter.hpp... Parsing file /<>/pwiz/data/identdata/TextWriter.hpp... Preprocessing /<>/pwiz/data/identdata/Version.hpp... Parsing file /<>/pwiz/data/identdata/Version.hpp... Preprocessing /<>/pwiz/data/misc/CalibrationParameters.hpp... Parsing file /<>/pwiz/data/misc/CalibrationParameters.hpp... Preprocessing /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Parsing file /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Preprocessing /<>/pwiz/data/misc/FrequencyData.hpp... Parsing file /<>/pwiz/data/misc/FrequencyData.hpp... Preprocessing /<>/pwiz/data/misc/FrequencyDataTest.cpp... Parsing file /<>/pwiz/data/misc/FrequencyDataTest.cpp... Preprocessing /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Parsing file /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Preprocessing /<>/pwiz/data/misc/MinimumPepXML.hpp... Parsing file /<>/pwiz/data/misc/MinimumPepXML.hpp... Preprocessing /<>/pwiz/data/misc/MinimumPepXMLTest.cpp... Parsing file /<>/pwiz/data/misc/MinimumPepXMLTest.cpp... Preprocessing /<>/pwiz/data/misc/PeakData.hpp... Parsing file /<>/pwiz/data/misc/PeakData.hpp... Preprocessing /<>/pwiz/data/misc/PeakDataTest.cpp... Parsing file /<>/pwiz/data/misc/PeakDataTest.cpp... Preprocessing /<>/pwiz/data/misc/SampleDatum.hpp... Parsing file /<>/pwiz/data/misc/SampleDatum.hpp... Preprocessing /<>/pwiz/data/misc/SampleDatumTest.cpp... Parsing file /<>/pwiz/data/misc/SampleDatumTest.cpp... Preprocessing /<>/pwiz/data/msdata/BinaryDataEncoder.hpp... Parsing file /<>/pwiz/data/msdata/BinaryDataEncoder.hpp... Preprocessing /<>/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Parsing file /<>/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramList_mzML.hpp... Parsing file /<>/pwiz/data/msdata/ChromatogramList_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Parsing file /<>/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramListBase.hpp... Parsing file /<>/pwiz/data/msdata/ChromatogramListBase.hpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Parsing file /<>/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Preprocessing /<>/pwiz/data/msdata/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/msdata/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/msdata/Diff.hpp... Parsing file /<>/pwiz/data/msdata/Diff.hpp... Preprocessing /<>/pwiz/data/msdata/DiffTest.cpp... Parsing file /<>/pwiz/data/msdata/DiffTest.cpp... Preprocessing /<>/pwiz/data/msdata/examples.hpp... Parsing file /<>/pwiz/data/msdata/examples.hpp... Preprocessing /<>/pwiz/data/msdata/Index_mzML.hpp... Parsing file /<>/pwiz/data/msdata/Index_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/IO.hpp... Parsing file /<>/pwiz/data/msdata/IO.hpp... Preprocessing /<>/pwiz/data/msdata/IOTest.cpp... Parsing file /<>/pwiz/data/msdata/IOTest.cpp... Preprocessing /<>/pwiz/data/msdata/LegacyAdapter.hpp... Parsing file /<>/pwiz/data/msdata/LegacyAdapter.hpp... Preprocessing /<>/pwiz/data/msdata/LegacyAdapterTest.cpp... Parsing file /<>/pwiz/data/msdata/LegacyAdapterTest.cpp... Preprocessing /<>/pwiz/data/msdata/MemoryMRUCache.hpp... Parsing file /<>/pwiz/data/msdata/MemoryMRUCache.hpp... Preprocessing /<>/pwiz/data/msdata/MSData.hpp... Parsing file /<>/pwiz/data/msdata/MSData.hpp... Preprocessing /<>/pwiz/data/msdata/MSDataFile.hpp... Parsing file /<>/pwiz/data/msdata/MSDataFile.hpp... Preprocessing /<>/pwiz/data/msdata/MSDataFileTest.cpp... Parsing file /<>/pwiz/data/msdata/MSDataFileTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSDataMerger.hpp... Parsing file /<>/pwiz/data/msdata/MSDataMerger.hpp... Preprocessing /<>/pwiz/data/msdata/MSDataMergerTest.cpp... Parsing file /<>/pwiz/data/msdata/MSDataMergerTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSDataTest.cpp... Parsing file /<>/pwiz/data/msdata/MSDataTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSnReaderTest.cpp... Parsing file /<>/pwiz/data/msdata/MSnReaderTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSNumpress.hpp... Parsing file /<>/pwiz/data/msdata/MSNumpress.hpp... Preprocessing /<>/pwiz/data/msdata/Reader.hpp... Parsing file /<>/pwiz/data/msdata/Reader.hpp... Preprocessing /<>/pwiz/data/msdata/ReaderTest.cpp... Parsing file /<>/pwiz/data/msdata/ReaderTest.cpp... Preprocessing /<>/pwiz/data/msdata/References.hpp... Parsing file /<>/pwiz/data/msdata/References.hpp... Preprocessing /<>/pwiz/data/msdata/ReferencesTest.cpp... Parsing file /<>/pwiz/data/msdata/ReferencesTest.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MGF.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_MGF.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MGF_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_MGF_Test.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MSn.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_MSn.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MSn_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_MSn_Test.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzML.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Parsing file /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumInfo.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumInfo.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumIterator.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumIterator.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzML.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzXML.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzXML.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListBase.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumListBase.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListBaseTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumListBaseTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListCache.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumListCache.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListCacheTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumListCacheTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListWrapper.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumListWrapper.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Preprocessing /<>/pwiz/data/msdata/TextWriter.hpp... Parsing file /<>/pwiz/data/msdata/TextWriter.hpp... Preprocessing /<>/pwiz/data/msdata/Version.hpp... Parsing file /<>/pwiz/data/msdata/Version.hpp... Preprocessing /<>/pwiz/data/proteome/AminoAcid.hpp... Parsing file /<>/pwiz/data/proteome/AminoAcid.hpp... Preprocessing /<>/pwiz/data/proteome/AminoAcidTest.cpp... Parsing file /<>/pwiz/data/proteome/AminoAcidTest.cpp... Preprocessing /<>/pwiz/data/proteome/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/proteome/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/proteome/Diff.hpp... Parsing file /<>/pwiz/data/proteome/Diff.hpp... Preprocessing /<>/pwiz/data/proteome/DiffTest.cpp... Parsing file /<>/pwiz/data/proteome/DiffTest.cpp... Preprocessing /<>/pwiz/data/proteome/Digestion.hpp... Parsing file /<>/pwiz/data/proteome/Digestion.hpp... Preprocessing /<>/pwiz/data/proteome/DigestionTest.cpp... Parsing file /<>/pwiz/data/proteome/DigestionTest.cpp... Preprocessing /<>/pwiz/data/proteome/examples.hpp... Parsing file /<>/pwiz/data/proteome/examples.hpp... Preprocessing /<>/pwiz/data/proteome/Modification.hpp... Parsing file /<>/pwiz/data/proteome/Modification.hpp... Preprocessing /<>/pwiz/data/proteome/Peptide.hpp... Parsing file /<>/pwiz/data/proteome/Peptide.hpp... Preprocessing /<>/pwiz/data/proteome/PeptideTest.cpp... Parsing file /<>/pwiz/data/proteome/PeptideTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteinListCache.hpp... Parsing file /<>/pwiz/data/proteome/ProteinListCache.hpp... Preprocessing /<>/pwiz/data/proteome/ProteinListCacheTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteinListCacheTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteinListWrapper.hpp... Parsing file /<>/pwiz/data/proteome/ProteinListWrapper.hpp... Preprocessing /<>/pwiz/data/proteome/ProteinListWrapperTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteinListWrapperTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteomeData.hpp... Parsing file /<>/pwiz/data/proteome/ProteomeData.hpp... Preprocessing /<>/pwiz/data/proteome/ProteomeDataFile.hpp... Parsing file /<>/pwiz/data/proteome/ProteomeDataFile.hpp... Preprocessing /<>/pwiz/data/proteome/ProteomeDataFileTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteomeDataFileTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteomeDataTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteomeDataTest.cpp... Preprocessing /<>/pwiz/data/proteome/Reader.hpp... Parsing file /<>/pwiz/data/proteome/Reader.hpp... Preprocessing /<>/pwiz/data/proteome/Reader_FASTA.hpp... Parsing file /<>/pwiz/data/proteome/Reader_FASTA.hpp... Preprocessing /<>/pwiz/data/proteome/ReaderTest.cpp... Parsing file /<>/pwiz/data/proteome/ReaderTest.cpp... Preprocessing /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Parsing file /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Preprocessing /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Parsing file /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Preprocessing /<>/pwiz/data/proteome/TextWriter.hpp... Parsing file /<>/pwiz/data/proteome/TextWriter.hpp... Preprocessing /<>/pwiz/data/proteome/Version.hpp... Parsing file /<>/pwiz/data/proteome/Version.hpp... Preprocessing /<>/pwiz/data/tradata/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/tradata/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/tradata/Diff.hpp... Parsing file /<>/pwiz/data/tradata/Diff.hpp... Preprocessing /<>/pwiz/data/tradata/DiffTest.cpp... Parsing file /<>/pwiz/data/tradata/DiffTest.cpp... Preprocessing /<>/pwiz/data/tradata/examples.hpp... Parsing file /<>/pwiz/data/tradata/examples.hpp... Preprocessing /<>/pwiz/data/tradata/IO.hpp... Parsing file /<>/pwiz/data/tradata/IO.hpp... Preprocessing /<>/pwiz/data/tradata/IOTest.cpp... Parsing file /<>/pwiz/data/tradata/IOTest.cpp... Preprocessing /<>/pwiz/data/tradata/Reader.hpp... Parsing file /<>/pwiz/data/tradata/Reader.hpp... Preprocessing /<>/pwiz/data/tradata/ReaderTest.cpp... Parsing file /<>/pwiz/data/tradata/ReaderTest.cpp... Preprocessing /<>/pwiz/data/tradata/References.hpp... Parsing file /<>/pwiz/data/tradata/References.hpp... Preprocessing /<>/pwiz/data/tradata/ReferencesTest.cpp... Parsing file /<>/pwiz/data/tradata/ReferencesTest.cpp... Preprocessing /<>/pwiz/data/tradata/Serializer_traML.hpp... Parsing file /<>/pwiz/data/tradata/Serializer_traML.hpp... Preprocessing /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Parsing file /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Preprocessing /<>/pwiz/data/tradata/TextWriter.hpp... Parsing file /<>/pwiz/data/tradata/TextWriter.hpp... Preprocessing /<>/pwiz/data/tradata/TraData.hpp... Parsing file /<>/pwiz/data/tradata/TraData.hpp... Preprocessing /<>/pwiz/data/tradata/TraDataFile.hpp... Parsing file /<>/pwiz/data/tradata/TraDataFile.hpp... Preprocessing /<>/pwiz/data/tradata/TraDataFileTest.cpp... Parsing file /<>/pwiz/data/tradata/TraDataFileTest.cpp... Preprocessing /<>/pwiz/data/tradata/TraDataTest.cpp... Parsing file /<>/pwiz/data/tradata/TraDataTest.cpp... Preprocessing /<>/pwiz/data/tradata/Version.hpp... Parsing file /<>/pwiz/data/tradata/Version.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Parsing file /<>/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Parsing file /<>/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Parsing file /<>/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp... Parsing file /<>/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Parsing file /<>/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Parsing file /<>/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp... Parsing file /<>/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp... Parsing file /<>/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Preprocessing /<>/pwiz/utility/chemistry/Chemistry.hpp... Parsing file /<>/pwiz/utility/chemistry/Chemistry.hpp... Preprocessing /<>/pwiz/utility/chemistry/ChemistryData.hpp... Parsing file /<>/pwiz/utility/chemistry/ChemistryData.hpp... Preprocessing /<>/pwiz/utility/chemistry/ChemistryTest.cpp... Parsing file /<>/pwiz/utility/chemistry/ChemistryTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/Ion.hpp... Parsing file /<>/pwiz/utility/chemistry/Ion.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeTable.hpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeTable.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeTableTest.cpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeTableTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/MZTolerance.hpp... Parsing file /<>/pwiz/utility/chemistry/MZTolerance.hpp... Preprocessing /<>/pwiz/utility/chemistry/MZToleranceTest.cpp... Parsing file /<>/pwiz/utility/chemistry/MZToleranceTest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/base.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/base.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/basetest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/basetest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/constants.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/constants.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/copy_iftest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/copy_iftest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/copyif.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/copyif.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/cumsum.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/cumsum.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/cumsumtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/cumsumtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/diff.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/diff.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/difftest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/difftest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/interpolate.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/interpolate.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/scale.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/scale.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/utilities/base.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/utilities/base.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/filter.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/filter.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Parsing file /<>/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Parsing file /<>/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Preprocessing /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Parsing file /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Preprocessing /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp... Parsing file /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp... Preprocessing /<>/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Parsing file /<>/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/bin1d.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/bin1d.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/breakspec.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/breakspec.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/convert2dense.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/convert2dense.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Parsing file /<>/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Preprocessing /<>/pwiz/utility/math/erf.hpp... Parsing file /<>/pwiz/utility/math/erf.hpp... Preprocessing /<>/pwiz/utility/math/erfTest.cpp... Parsing file /<>/pwiz/utility/math/erfTest.cpp... Preprocessing /<>/pwiz/utility/math/HouseholderQR.hpp... Parsing file /<>/pwiz/utility/math/HouseholderQR.hpp... Preprocessing /<>/pwiz/utility/math/HouseholderQRTest.cpp... Parsing file /<>/pwiz/utility/math/HouseholderQRTest.cpp... Preprocessing /<>/pwiz/utility/math/LinearLeastSquares.hpp... Parsing file /<>/pwiz/utility/math/LinearLeastSquares.hpp... Preprocessing /<>/pwiz/utility/math/LinearLeastSquaresTest.cpp... Parsing file /<>/pwiz/utility/math/LinearLeastSquaresTest.cpp... Preprocessing /<>/pwiz/utility/math/LinearSolver.hpp... Parsing file /<>/pwiz/utility/math/LinearSolver.hpp... Preprocessing /<>/pwiz/utility/math/LinearSolverTest.cpp... Parsing file /<>/pwiz/utility/math/LinearSolverTest.cpp... Preprocessing /<>/pwiz/utility/math/MatchedFilter.hpp... Parsing file /<>/pwiz/utility/math/MatchedFilter.hpp... Preprocessing /<>/pwiz/utility/math/MatchedFilterTest.cpp... Parsing file /<>/pwiz/utility/math/MatchedFilterTest.cpp... Preprocessing /<>/pwiz/utility/math/MatrixInverse.hpp... Parsing file /<>/pwiz/utility/math/MatrixInverse.hpp... Preprocessing /<>/pwiz/utility/math/OrderedPair.hpp... Parsing file /<>/pwiz/utility/math/OrderedPair.hpp... Preprocessing /<>/pwiz/utility/math/OrderedPairTest.cpp... Parsing file /<>/pwiz/utility/math/OrderedPairTest.cpp... Preprocessing /<>/pwiz/utility/math/Parabola.hpp... Parsing file /<>/pwiz/utility/math/Parabola.hpp... Preprocessing /<>/pwiz/utility/math/ParabolaTest.cpp... Parsing file /<>/pwiz/utility/math/ParabolaTest.cpp... Preprocessing /<>/pwiz/utility/math/qr.hpp... Parsing file /<>/pwiz/utility/math/qr.hpp... Preprocessing /<>/pwiz/utility/math/qrTest.cpp... Parsing file /<>/pwiz/utility/math/qrTest.cpp... Preprocessing /<>/pwiz/utility/math/round.hpp... Parsing file /<>/pwiz/utility/math/round.hpp... Preprocessing /<>/pwiz/utility/math/Stats.hpp... Parsing file /<>/pwiz/utility/math/Stats.hpp... Preprocessing /<>/pwiz/utility/math/StatsTest.cpp... Parsing file /<>/pwiz/utility/math/StatsTest.cpp... Preprocessing /<>/pwiz/utility/math/Types.hpp... Parsing file /<>/pwiz/utility/math/Types.hpp... Preprocessing /<>/pwiz/utility/minimxml/SAXParser.hpp... Parsing file /<>/pwiz/utility/minimxml/SAXParser.hpp... Preprocessing /<>/pwiz/utility/minimxml/SAXParserTest.cpp... Parsing file /<>/pwiz/utility/minimxml/SAXParserTest.cpp... Preprocessing /<>/pwiz/utility/minimxml/XMLWriter.hpp... Parsing file /<>/pwiz/utility/minimxml/XMLWriter.hpp... Preprocessing /<>/pwiz/utility/minimxml/XMLWriterTest.cpp... Parsing file /<>/pwiz/utility/minimxml/XMLWriterTest.cpp... Preprocessing /<>/pwiz/utility/misc/almost_equal.hpp... Parsing file /<>/pwiz/utility/misc/almost_equal.hpp... Preprocessing /<>/pwiz/utility/misc/almost_equal_test.cpp... Parsing file /<>/pwiz/utility/misc/almost_equal_test.cpp... Preprocessing /<>/pwiz/utility/misc/Base64.hpp... Parsing file /<>/pwiz/utility/misc/Base64.hpp... Preprocessing /<>/pwiz/utility/misc/Base64Test.cpp... Parsing file /<>/pwiz/utility/misc/Base64Test.cpp... Preprocessing /<>/pwiz/utility/misc/BinaryData.hpp... Parsing file /<>/pwiz/utility/misc/BinaryData.hpp... Preprocessing /<>/pwiz/utility/misc/BinaryDataTest.cpp... Parsing file /<>/pwiz/utility/misc/BinaryDataTest.cpp... Preprocessing /<>/pwiz/utility/misc/CharIndexedVector.hpp... Parsing file /<>/pwiz/utility/misc/CharIndexedVector.hpp... Preprocessing /<>/pwiz/utility/misc/ClickwrapPrompter.hpp... Parsing file /<>/pwiz/utility/misc/ClickwrapPrompter.hpp... Preprocessing /<>/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Parsing file /<>/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Preprocessing /<>/pwiz/utility/misc/Container.hpp... Parsing file /<>/pwiz/utility/misc/Container.hpp... Preprocessing /<>/pwiz/utility/misc/cpp_cli_utilities.hpp... Parsing file /<>/pwiz/utility/misc/cpp_cli_utilities.hpp... Preprocessing /<>/pwiz/utility/misc/DateTime.hpp... Parsing file /<>/pwiz/utility/misc/DateTime.hpp... Preprocessing /<>/pwiz/utility/misc/DateTimeTest.cpp... Parsing file /<>/pwiz/utility/misc/DateTimeTest.cpp... Preprocessing /<>/pwiz/utility/misc/endian.hpp... Parsing file /<>/pwiz/utility/misc/endian.hpp... Preprocessing /<>/pwiz/utility/misc/endian_test.cpp... Parsing file /<>/pwiz/utility/misc/endian_test.cpp... Preprocessing /<>/pwiz/utility/misc/Environment.hpp... Parsing file /<>/pwiz/utility/misc/Environment.hpp... Preprocessing /<>/pwiz/utility/misc/Exception.hpp... Parsing file /<>/pwiz/utility/misc/Exception.hpp... Preprocessing /<>/pwiz/utility/misc/ExceptionTest.cpp... Parsing file /<>/pwiz/utility/misc/ExceptionTest.cpp... Preprocessing /<>/pwiz/utility/misc/Export.hpp... Parsing file /<>/pwiz/utility/misc/Export.hpp... Preprocessing /<>/pwiz/utility/misc/FailTest.cpp... Parsing file /<>/pwiz/utility/misc/FailTest.cpp... Preprocessing /<>/pwiz/utility/misc/Filesystem.hpp... Parsing file /<>/pwiz/utility/misc/Filesystem.hpp... Preprocessing /<>/pwiz/utility/misc/FilesystemTest.cpp... Parsing file /<>/pwiz/utility/misc/FilesystemTest.cpp... Preprocessing /<>/pwiz/utility/misc/Image.hpp... Parsing file /<>/pwiz/utility/misc/Image.hpp... Preprocessing /<>/pwiz/utility/misc/IntegerSet.hpp... Parsing file /<>/pwiz/utility/misc/IntegerSet.hpp... Preprocessing /<>/pwiz/utility/misc/IntegerSetTest.cpp... Parsing file /<>/pwiz/utility/misc/IntegerSetTest.cpp... Preprocessing /<>/pwiz/utility/misc/IterationListener.hpp... Parsing file /<>/pwiz/utility/misc/IterationListener.hpp... Preprocessing /<>/pwiz/utility/misc/IterationListenerTest.cpp... Parsing file /<>/pwiz/utility/misc/IterationListenerTest.cpp... Preprocessing /<>/pwiz/utility/misc/mru_list.hpp... Parsing file /<>/pwiz/utility/misc/mru_list.hpp... Preprocessing /<>/pwiz/utility/misc/mru_list_test.cpp... Parsing file /<>/pwiz/utility/misc/mru_list_test.cpp... Preprocessing /<>/pwiz/utility/misc/MSIHandler.hpp... Parsing file /<>/pwiz/utility/misc/MSIHandler.hpp... Preprocessing /<>/pwiz/utility/misc/Once.hpp... Parsing file /<>/pwiz/utility/misc/Once.hpp... Preprocessing /<>/pwiz/utility/misc/optimized_lexical_cast.hpp... Parsing file /<>/pwiz/utility/misc/optimized_lexical_cast.hpp... Preprocessing /<>/pwiz/utility/misc/pinned_gcroot.h... Parsing file /<>/pwiz/utility/misc/pinned_gcroot.h... Preprocessing /<>/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Parsing file /<>/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Preprocessing /<>/pwiz/utility/misc/SHA1.h... Parsing file /<>/pwiz/utility/misc/SHA1.h... Preprocessing /<>/pwiz/utility/misc/SHA1_ostream.hpp... Parsing file /<>/pwiz/utility/misc/SHA1_ostream.hpp... Preprocessing /<>/pwiz/utility/misc/SHA1_ostream_test.cpp... Parsing file /<>/pwiz/utility/misc/SHA1_ostream_test.cpp... Preprocessing /<>/pwiz/utility/misc/SHA1Calculator.hpp... Parsing file /<>/pwiz/utility/misc/SHA1Calculator.hpp... Preprocessing /<>/pwiz/utility/misc/SHA1CalculatorTest.cpp... Parsing file /<>/pwiz/utility/misc/SHA1CalculatorTest.cpp... Preprocessing /<>/pwiz/utility/misc/shared_map.hpp... Parsing file /<>/pwiz/utility/misc/shared_map.hpp... Preprocessing /<>/pwiz/utility/misc/Singleton.hpp... Parsing file /<>/pwiz/utility/misc/Singleton.hpp... Preprocessing /<>/pwiz/utility/misc/Std.hpp... Parsing file /<>/pwiz/utility/misc/Std.hpp... Preprocessing /<>/pwiz/utility/misc/Stream.hpp... Parsing file /<>/pwiz/utility/misc/Stream.hpp... Preprocessing /<>/pwiz/utility/misc/String.hpp... Parsing file /<>/pwiz/utility/misc/String.hpp... Preprocessing /<>/pwiz/utility/misc/TabReader.hpp... Parsing file /<>/pwiz/utility/misc/TabReader.hpp... Preprocessing /<>/pwiz/utility/misc/TabReaderTest.cpp... Parsing file /<>/pwiz/utility/misc/TabReaderTest.cpp... Preprocessing /<>/pwiz/utility/misc/Timer.hpp... Parsing file /<>/pwiz/utility/misc/Timer.hpp... Preprocessing /<>/pwiz/utility/misc/unit.hpp... Parsing file /<>/pwiz/utility/misc/unit.hpp... Preprocessing /<>/pwiz/util/<>/pwiz/utility/findmf/base/base/constants.hpp:28: warning: the name 'Constants.h' supplied as the argument in the \file statement is not an input file /<>/pwiz/utility/findmf/base/base/cumsum.hpp:27: warning: the name 'cumsum.h' supplied as the argument in the \file statement is not an input file /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp:29: warning: the name 'MassCompareFunctors.h' supplied as the argument in the \file statement is not an input file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:42: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::frequency::FrequencyEstimatorSimple::Type /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp:43: warning: documented symbol 'enum PWIZ_API_DECL pwiz::frequency::TruncatedLorentzian::ParameterIndex' was not declared or defined. /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp:75: warning: documented symbol 'enum PWIZ_API_DECL pwiz::analysis::MSDataAnalyzer::UpdateRequest' was not declared or defined. /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp:164: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::analysis::MSDataAnalyzerDriver::Status /<>/pwiz/data/common/cv.hpp:112: warning: documented symbol 'enum PWIZ_API_DECL pwiz::cv::pwiz::cv::CVID' was not declared or defined. /<>/pwiz/data/common/Unimod.hpp:80: warning: member with no name found. /<>/pwiz/data/identdata/IdentDataFile.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::identdata::IdentDataFile::pwiz::identdata::IdentDataFile::Format' was not declared or defined. /<>/pwiz/data/identdata/IO.hpp:211: warning: documented symbol 'enum PWIZ_API_DECL pwiz::identdata::IO::AnalysisDataFlag' was not declared or defined. /<>/pwiz/data/identdata/IO.hpp:255: warning: documented symbol 'enum PWIZ_API_DECL pwiz::identdata::IO::SequenceCollectionFlag' was not declared or defined. /<>/pwiz/data/misc/FrequencyData.hpp:54: warning: documented symbol 'enum PWIZ_API_DECL pwiz::data::FrequencyData::IOMode' was not declared or defined. /<>/pwiz/data/msdata/IO.hpp:173: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::IO::BinaryDataFlag' was not declared or defined. /<>/pwiz/data/msdata/IO.hpp:212: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::IO::SpectrumListFlag' was not declared or defined. /<>/pwiz/data/msdata/MemoryMRUCache.hpp:34: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::MemoryMRUCacheMode' was not declared or defined. /<>/pwiz/data/msdata/MSDataFile.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::MSDataFile::pwiz::msdata::MSDataFile::Format' was not declared or defined. /<>/pwiz/data/proteome/AminoAcid.hpp:43: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::proteome::AminoAcid::pwiz::proteome::AminoAcid::Type /<>/pwiz/data/proteome/Digestion.hpp:117: warning: no matching class member found for enum PWIZ_API_DECL pwiz::proteome::Digestion::pwiz::proteome::Digestion::Specificity /<>/pwiz/data/proteome/Peptide.hpp:40: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::pwiz::proteome::ModificationParsing' was not declared or defined. /<>/pwiz/data/proteome/Peptide.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::pwiz::proteome::ModificationDelimiter' was not declared or defined. /<>/pwiz/data/proteome/ProteinListCache.hpp:36: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::ProteinListCacheMode' was not declared or defined. /<>/pwiz/data/proteome/ProteomeDataFile.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::ProteomeDataFile::pwiz::proteome::ProteomeDataFile::Format' was not declared or defined. /<>/pwiz/data/tradata/TraDataFile.hpp:45: warning: documented symbol 'enum PWIZ_API_DECL pwiz::tradata::TraDataFile::pwiz::tradata::TraDataFile::Format' was not declared or defined. /<>/pwiz/utility/chemistry/Chemistry.hpp:78: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::chemistry::Element::pwiz::chemistry::Element::Type /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp:44: warning: documented symbol 'enum PWIZ_API_DECL pwiz::chemistry::IsotopeCalculator::NormalizationFlags' was not declared or defined. /<>/pwiz/utility/math/LinearLeastSquares.hpp:34: warning: documented symbol 'enum PWIZ_API_DECL pwiz::math::LinearLeastSquaresType' was not declared or defined. /<>/pwiz/utility/math/LinearSolver.hpp:47: warning: documented symbol 'enum PWIZ_API_DECL pwiz::math::LinearSolverType' was not declared or defined. /<>/pwiz/utility/minimxml/XMLWriter.hpp:52: warning: documented symbol 'enum PWIZ_API_DECL pwiz::minimxml::XMLWriter::pwiz::minimxml::XMLWriter::StyleFlag' was not declared or defined. /<>/pwiz/utility/misc/Image.hpp:64: warning: documented symbol 'enum PWIZ_API_DECL pwiz::util::Image::Align' was not declared or defined. /<>/pwiz/utility/misc/Image.hpp:65: warning: documented symbol 'enum PWIZ_API_DECL pwiz::util::Image::Size' was not declared or defined. /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /<>/pwiz/data/common/cv.hpp:875: warning: Found unknown command '@LDI' /<>/pwiz/data/common/cv.hpp:878: warning: Found unknown command '@LDI' /<>/pwiz/data/common/cv.hpp:4580: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:4583: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:8945: warning: Unsupported xml/html tag found /<>/pwiz/data/common/cv.hpp:7889: warning: Found unknown command '\t' /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:56: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:57: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found sh: 1: latex: not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! ity/misc/VendorReaderTestHarness.hpp... Parsing file /<>/pwiz/utility/misc/VendorReaderTestHarness.hpp... Preprocessing /<>/pwiz/utility/misc/virtual_map.hpp... Parsing file /<>/pwiz/utility/misc/virtual_map.hpp... Preprocessing /<>/pwiz/utility/proteome/IPIFASTADatabase.hpp... Parsing file /<>/pwiz/utility/proteome/IPIFASTADatabase.hpp... Preprocessing /<>/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Parsing file /<>/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Preprocessing /<>/pwiz/Version.hpp... Parsing file /<>/pwiz/Version.hpp... Preprocessing /<>/doc/dox/mainpage.hpp... Parsing file /<>/doc/dox/mainpage.hpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating example documentation... Generating file sources... Generating code for file mainpage.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_FilterTest.cpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefinerTest.cpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListFactoryTest.cpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListWrapperTest.cpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp... Generating code for file /<>/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmootherTest.cpp... Generating code for file /<>/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Generating code for file /<>/pwiz/analysis/common/CwtPeakDetector.hpp... Generating code for file /<>/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Generating code for file /<>/pwiz/analysis/common/DataFilter.hpp... Generating code for file /<>/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Generating code for file /<>/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Generating code for file /<>/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Generating code for file /<>/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Generating code for file /<>/pwiz/analysis/common/PeakDetector.hpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetector.hpp... Generating code for file /<>/pwiz/analysis/common/Smoother.hpp... Generating code for file /<>/pwiz/analysis/common/WhittakerSmoother.hpp... Generating code for file /<>/pwiz/analysis/common/WhittakerSmootherTest.cpp... Generating code for file /<>/pwiz/analysis/common/ZeroSampleFiller.hpp... Generating code for file /<>/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Generating code for file /<>/pwiz/analysis/demux/CubicHermiteSpline.hpp... Generating code for file /<>/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxDebugReader.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxDebugWriter.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxHelpers.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxHelpersTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxSolver.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxSolverTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxTypes.hpp... Generating code for file /<>/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Generating code for file /<>/pwiz/analysis/demux/IDemultiplexer.hpp... Generating code for file /<>/pwiz/analysis/demux/IInterpolation.hpp... Generating code for file /<>/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Generating code for file /<>/pwiz/analysis/demux/MatrixIO.hpp... Generating code for file /<>/pwiz/analysis/demux/MatrixIOTest.cpp... Generating code for file /<>/pwiz/analysis/demux/MSXDemultiplexer.hpp... Generating code for file /<>/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Generating code for file /<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Generating code for file /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Generating code for file /<>/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/DerivativeTest.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimator.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Generating code for file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Generating code for file /<>/pwiz/analysis/frequency/ParameterEstimator.hpp... Generating code for file /<>/pwiz/analysis/frequency/ParametrizedFunction.hpp... Generating code for file /<>/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorNaive.hpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzianTest.cpp... Generating code for file /<>/pwiz/analysis/passive/MetadataReporter.hpp... Generating code for file /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp... Generating code for file /<>/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Generating code for file /<>/pwiz/analysis/passive/MSDataCache.hpp... Generating code for file /<>/pwiz/analysis/passive/MSDataCacheTest.cpp... Generating code for file /<>/pwiz/analysis/passive/PepXMLCat.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionAnalyzer.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionSIC.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionSlice.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionTIC.hpp... Generating code for file /<>/pwiz/analysis/passive/RunSummary.hpp... Generating code for file /<>/pwiz/analysis/passive/SpectrumBinaryData.hpp... Generating code for file /<>/pwiz/analysis/passive/SpectrumTable.hpp... Generating code for file /<>/pwiz/analysis/passive/TabularConfig.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/Noise.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Generating code for file /<>/pwiz/analysis/Version.hpp... Generating code for file /<>/pwiz/data/identdata/Version.hpp... Generating code for file /<>/pwiz/data/msdata/Version.hpp... Generating code for file /<>/pwiz/data/proteome/Version.hpp... Generating code for file /<>/pwiz/data/tradata/Version.hpp... Generating code for file /<>/pwiz/Version.hpp... Generating code for file /<>/pwiz/data/common/BinaryIndexStream.hpp... Generating code for file /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Generating code for file /<>/pwiz/data/common/cv.hpp... Generating code for file /<>/pwiz/data/common/cvtest.cpp... Generating code for file /<>/pwiz/data/common/CVTranslator.hpp... Generating code for file /<>/pwiz/data/common/CVTranslatorTest.cpp... Generating code for file /<>/pwiz/data/common/diff_std.hpp... Generating code for file /<>/pwiz/data/common/diff_std_test.cpp... Generating code for file /<>/pwiz/data/common/Index.hpp... Generating code for file /<>/pwiz/data/common/MemoryIndex.hpp... Generating code for file /<>/pwiz/data/common/MemoryIndexTest.cpp... Generating code for file /<>/pwiz/data/common/obo.hpp... Generating code for file /<>/pwiz/data/common/obotest.cpp... Generating code for file /<>/pwiz/data/common/ParamTypes.hpp... Generating code for file /<>/pwiz/data/common/ParamTypesTest.cpp... Generating code for file /<>/pwiz/data/common/Unimod.hpp... Generating code for file /<>/pwiz/data/common/UnimodTest.cpp... Generating code for file /<>/pwiz/data/identdata/DefaultReaderList.hpp... Generating code for file /<>/pwiz/data/msdata/DefaultReaderList.hpp... Generating code for file /<>/pwiz/data/proteome/DefaultReaderList.hpp... Generating code for file /<>/pwiz/data/tradata/DefaultReaderList.hpp... Generating code for file /<>/pwiz/data/identdata/DelimReader.hpp... Generating code for file /<>/pwiz/data/identdata/DelimWriter.hpp... Generating code for file /<>/pwiz/data/identdata/Diff.hpp... Generating code for file /<>/pwiz/data/msdata/Diff.hpp... Generating code for file /<>/pwiz/data/proteome/Diff.hpp... Generating code for file /<>/pwiz/data/tradata/Diff.hpp... Generating code for file /<>/pwiz/utility/findmf/base/base/diff.hpp... Generating code for file /<>/pwiz/data/identdata/DiffTest.cpp... Generating code for file /<>/pwiz/data/msdata/DiffTest.cpp... Generating code for file /<>/pwiz/data/proteome/DiffTest.cpp... Generating code for file /<>/pwiz/data/tradata/DiffTest.cpp... 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Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/Noise.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideID.hpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Generating docs for file /<>/libpwiz-3.0.183/<>/pwiz/data/common/cv.hpp:875: warning: Found unknown command '@LDI' /<>/pwiz/data/common/cv.hpp:878: warning: Found unknown command '@LDI' /<>/pwiz/data/common/cv.hpp:4580: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:4583: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:7889: warning: Found unknown command '\t' /<>/pwiz/data/common/cv.hpp:8945: warning: Unsupported xml/html tag found /<>/pwiz/data/common/cv.hpp:875: warning: Found unknown command '@LDI' /<>/pwiz/data/common/cv.hpp:878: warning: Found unknown command '@LDI' /<>/pwiz/data/common/cv.hpp:4580: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:4583: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:7889: warning: Found unknown command '\t' /<>/pwiz/data/common/cv.hpp:8945: warning: Unsupported xml/html tag found 42/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Generating docs for file /<>/pwiz/analysis/Version.hpp... Generating docs for file /<>/pwiz/data/identdata/Version.hpp... Generating docs for file /<>/pwiz/data/msdata/Version.hpp... Generating docs for file /<>/pwiz/data/proteome/Version.hpp... Generating docs for file /<>/pwiz/data/tradata/Version.hpp... Generating docs for file /<>/pwiz/Version.hpp... Generating docs for file /<>/pwiz/data/common/BinaryIndexStream.hpp... Generating docs for file /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Generating docs for file /<>/pwiz/data/common/cv.hpp... Generating docs for file /<>/pwiz/data/common/cvtest.cpp... Generating docs for file /<>/pwiz/data/common/CVTranslator.hpp... Generating docs for file /<>/pwiz/data/common/CVTranslatorTest.cpp... Generating docs for file /<>/pwiz/data/common/diff_std.hpp... Generating docs for file /<>/pwiz/data/common/diff_std_test.cpp... Generating docs for file /<>/pwiz/data/common/Index.hpp... Generating docs for file /<>/pwiz/data/common/MemoryIndex.hpp... Generating docs for file /<>/pwiz/data/common/MemoryIndexTest.cpp... Generating docs for file /<>/pwiz/data/common/obo.hpp... Generating docs for file /<>/pwiz/data/common/obotest.cpp... Generating docs for file /<>/pwiz/data/common/ParamTypes.hpp... Generating docs for file /<>/pwiz/data/common/ParamTypesTest.cpp... Generating docs for file /<>/pwiz/data/common/Unimod.hpp... Generating docs for file /<>/pwiz/data/common/UnimodTest.cpp... Generating docs for file /<>/pwiz/data/identdata/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/msdata/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/proteome/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/tradata/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/identdata/DelimReader.hpp... Generating docs for file /<>/pwiz/data/identdata/DelimWriter.hpp... Generating docs for file /<>/pwiz/data/identdata/Diff.hpp... Generating docs for file /<>/pwiz/data/msdata/Diff.hpp... Generating docs for file /<>/pwiz/data/proteome/Diff.hpp... Generating docs for file /<>/pwiz/data/tradata/Diff.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/diff.hpp... Generating docs for file /<>/pwiz/data/identdata/DiffTest.cpp... Generating docs for file /<>/pwiz/data/msdata/DiffTest.cpp... Generating docs for file /<>/pwiz/data/proteome/DiffTest.cpp... Generating docs for file /<>/pwiz/data/tradata/DiffTest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/difftest.cpp... Generating docs for file /<>/pwiz/data/identdata/examples.hpp... Generating docs for file /<>/pwiz/data/msdata/examples.hpp... Generating docs for file /<>/pwiz/data/proteome/examples.hpp... Generating docs for file /<>/pwiz/data/tradata/examples.hpp... Generating docs for file /<>/pwiz/data/identdata/ExtendedReadTest.cpp... Generating docs for file /<>/pwiz/data/identdata/IdentData.hpp... Generating docs for file /<>/pwiz/data/identdata/IdentDataFile.hpp... Generating docs for file /<>/pwiz/data/identdata/IdentDataTest.cpp... Generating docs for file /<>/pwiz/data/identdata/IO.hpp... Generating docs for file /<>/pwiz/data/msdata/IO.hpp... Generating docs for file /<>/pwiz/data/tradata/IO.hpp... Generating docs for file /<>/pwiz/data/identdata/IOTest.cpp... Generating docs for file /<>/pwiz/data/msdata/IOTest.cpp... Generating docs for file /<>/pwiz/data/tradata/IOTest.cpp... Generating docs for file /<>/pwiz/data/identdata/KwCVMap.hpp... Generating docs for file /<>/pwiz/data/identdata/KwCVMapTest.cpp... Generating docs for file /<>/pwiz/data/identdata/MascotReader.hpp... Generating docs for file /<>/pwiz/data/identdata/MzidPredicates.hpp... Generating docs for file /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Generating docs for file /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Generating docs for file /<>/pwiz/data/identdata/Reader.hpp... Generating docs for file /<>/pwiz/data/msdata/Reader.hpp... Generating docs for file /<>/pwiz/data/proteome/Reader.hpp... Generating docs for file /<>/pwiz/data/tradata/Reader.hpp... Generating docs for file /<>/pwiz/data/identdata/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/msdata/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/tradata/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/identdata/References.hpp... Generating docs for file /<>/pwiz/data/msdata/References.hpp... Generating docs for file /<>/pwiz/data/tradata/References.hpp... Generating docs for file /<>/pwiz/data/identdata/ReferencesTest.cpp... Generating docs for file /<>/pwiz/data/msdata/ReferencesTest.cpp... Generating docs for file /<>/pwiz/data/tradata/ReferencesTest.cpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_mzid.hpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_mzid_Test.cpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_pepXML.hpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Generating docs for file /<>/pwiz/data/<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /identdata/Serializer_protXML.hpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_protXML_Test.cpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_Text.hpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Generating docs for file /<>/pwiz/data/identdata/TextWriter.hpp... Generating docs for file /<>/pwiz/data/msdata/TextWriter.hpp... Generating docs for file /<>/pwiz/data/proteome/TextWriter.hpp... Generating docs for file /<>/pwiz/data/tradata/TextWriter.hpp... Generating docs for file /<>/pwiz/data/misc/CalibrationParameters.hpp... Generating docs for file /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Generating docs for file /<>/pwiz/data/misc/FrequencyData.hpp... Generating docs for file /<>/pwiz/data/misc/FrequencyDataTest.cpp... Generating docs for file /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Generating docs for file /<>/pwiz/data/misc/MinimumPepXML.hpp... Generating docs for file /<>/pwiz/data/misc/MinimumPepXMLTest.cpp... Generating docs for file /<>/pwiz/data/misc/PeakData.hpp... Generating docs for file /<>/pwiz/data/misc/PeakDataTest.cpp... Generating docs for file /<>/pwiz/data/misc/SampleDatum.hpp... Generating docs for file /<>/pwiz/data/misc/SampleDatumTest.cpp... Generating docs for file /<>/pwiz/data/msdata/BinaryDataEncoder.hpp... Generating docs for file /<>/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Generating docs for file /<>/pwiz/data/msdata/ChromatogramList_mzML.hpp... Generating docs for file /<>/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/ChromatogramListBase.hpp... Generating docs for file /<>/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Generating docs for file /<>/pwiz/data/msdata/Index_mzML.hpp... Generating docs for file /<>/pwiz/data/msdata/LegacyAdapter.hpp... Generating docs for file /<>/pwiz/data/msdata/LegacyAdapterTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MemoryMRUCache.hpp... Generating docs for file /<>/pwiz/data/msdata/MSData.hpp... Generating docs for file /<>/pwiz/data/msdata/MSDataFile.hpp... Generating docs for file /<>/pwiz/data/msdata/MSDataFileTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MSDataMerger.hpp... Generating docs for file /<>/pwiz/data/msdata/MSDataMergerTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MSDataTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MSnReaderTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MSNumpress.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_MGF.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_MGF_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_MSn.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_MSn_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzML.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumInfo.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumIterator.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_mzML.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_mzXML.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListBase.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListBaseTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListCache.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListCacheTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListWrapper.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Generating docs for file /<>/pwiz/data/proteome/AminoAcid.hpp... Generating docs for file /<>/pwiz/data/proteome/AminoAcidTest.cpp... Generating docs for file /<>/pwiz/data/proteome/Digestion.hpp... Generating docs for file /<>/pwiz/data/proteome/DigestionTest.cpp... Generating docs for file /<>/pwiz/data/proteome/Modification.hpp... Generating docs for file /<>/pwiz/data/proteome/Peptide.hpp... Generating docs for file /<>/pwiz/data/proteome/PeptideTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListCache.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListCacheTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListWrapper.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListWrapperTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeData.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeDataFile.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeDataFileTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeDataTest.cpp... Generating docs for file /<>/pwiz/data/proteome/Reader_FASTA.hpp... Generating docs for file /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Generating docs for file /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Generating docs for file /<>/pwiz/data/tradata/Serializer_traML.hpp... Generating docs for file /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Generating docs for file /<>/pwiz/data/tradata/TraData.hpp... Generating docs for file /<>/pwiz/data/tradata/TraDataFile.hpp... Generating docs for file /<>/pwiz/data/tradata/TraDataFileTest.cpp... Generating docs for file /<>/pwiz/data/tradata/TraDataTest.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Generating docs for file /<>/pwiz/utility/chemistry/Chemistry.hpp... Generating docs for file /<>/pwiz/utility/chemistry/ChemistryData.hpp... Generating docs for file /<>/pwiz/utility/chemistry/ChemistryTest.cpp... Generating docs for file /<>/pwiz/utility/chemistry/Ion.hpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeTable.hpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeTableTest.cpp... Generating docs for file /<>/pwiz/utility/chemistry/MZTolerance.hpp... Generating docs for file /<>/pwiz/utility/chemistry/MZToleranceTest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/base.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/utilities/base.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/basetest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/constants.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/copy_iftest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/copyif.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/cumsum.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/cumsumtest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/interpolate.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/scale.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/filter.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/bin1d.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/breakspec.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/convert2dense.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Generating docs for file /<>/pwiz/utility/math/erf.hpp... Generating docs for file /<>/pwiz/utility/math/erfTest.cpp... Generating docs for file /<>/pwiz/utility/math/HouseholderQR.hpp... Generating docs for file /<>/pwiz/utility/math/HouseholderQRTest.cpp... Generating docs for file /<>/pwiz/utility/math/LinearLeastSquares.hpp... Generating docs for file /<>/pwiz/utility/math/LinearLeastSquaresTest.cpp... Generating docs for file /<>/pwiz/utility/math/LinearSolver.hpp... Generating docs for file /<>/pwiz/utility/math/LinearSolverTest.cpp... Generating docs for file /<>/pwiz/utility/math/MatchedFilter.hpp... Generating docs for file /<>/pwiz/utility/math/MatchedFilterTest.cpp... Generating docs for file /<>/pwiz/utility/math/MatrixInverse.hpp... Generating docs for file /<>/pwiz/utility/math/OrderedPair.hpp... Generating docs for file /<>/pwiz/utility/math/OrderedPairTest.cpp... Generating docs for file /<>/pwiz/utility/math/Parabola.hpp... Generating docs for file /<>/pwiz/utility/math/ParabolaTest.cpp... Generating docs for file /<>/pwiz/utility/math/qr.hpp... Generating docs for file /<>/pwiz/utility/math/qrTest.cpp... Generating docs for file /<>/pwiz/utility/math/round.hpp... Generating docs for file /<>/pwiz/utility/math/Stats.hpp... Generating docs for file /<>/pwiz/utility/math/StatsTest.cpp... Generating docs for file /<>/pwiz/utility/math/Types.hpp... Generating docs for file /<>/pwiz/utility/minimxml/SAXParser.hpp... Generating docs for file /<>/pwiz/utility/minimxml/SAXParserTest.cpp... Generating docs for file /<>/pwiz/utility/minimxml/XMLWriter.hpp... Generating docs for file /<>/pwiz/utility/minimxml/XMLWriterTest.cpp... Generating docs for file /<>/pwiz/utility/misc/almost_equal.hpp... Generating docs for file /<>/pwiz/utility/misc/almost_equal_test.cpp... Generating docs for file /<>/pwiz/utility/misc/Base64.hpp... Generating docs for file /<>/pwiz/utility/misc/Base64Test.cpp... Generating docs for file /<>/pwiz/utility/misc/BinaryData.hpp... Generating docs for file /<>/pwiz/utility/misc/BinaryDataTest.cpp... Generating docs for file /<>/pwiz/utility/misc/CharIndexedVector.hpp... Generating docs for file /<>/pwiz/utility/misc/ClickwrapPrompter.hpp... Generating docs for file /<>/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Generating docs for file /<>/pwiz/utility/misc/Container.hpp... Generating docs for file /<>/pwiz/utility/misc/cpp_cli_utilities.hpp... Generating docs for file /<>/pwiz/utility/misc/DateTime.hpp... Generating docs for file /<>/pwiz/utility/misc/DateTimeTest.cpp... Generating docs for file /<>/pwiz/utility/misc/endian.hpp... Generating docs for file /<>/pwiz/utility/misc/endian_test.cpp... Generating docs for file /<>/pwiz/utility/misc/Environment.hpp... Generating docs for file /<>/pwiz/utility/misc/Exception.hpp... Generating docs for file /<>/pwiz/utility/misc/ExceptionTest.cpp... Generating docs for file /<>/pwiz/utility/misc/Export.hpp... Generating docs for file /<>/pwiz/utility/misc/FailTest.cpp... Generating docs for file /<>/pwiz/utility/misc/Filesystem.hpp... Generating docs for file /<>/pwiz/utility/misc/FilesystemTest.cpp... Generating docs for file /<>/pwiz/utility/misc/Image.hpp... Generating docs for file /<>/pwiz/utility/misc/IntegerSet.hpp... Generating docs for file /<>/pwiz/utility/misc/IntegerSetTest.cpp... Generating docs for file /<>/pwiz/utility/misc/IterationListener.hpp... Generating docs for file /<>/pwiz/utility/misc/IterationListenerTest.cpp... Generating docs for file /<>/pwiz/utility/misc/mru_list.hpp... Generating docs for file /<>/pwiz/utility/misc/mru_list_test.cpp... Generating docs for file /<>/pwiz/utility/misc/MSIHandler.hpp... Generating docs for file /<>/pwiz/utility/misc/Once.hpp... Generating docs for file /<>/pwiz/utility/misc/optimized_lexical_cast.hpp... Generating docs for file /<>/pwiz/utility/misc/pinned_gcroot.h... Generating docs for file /<>/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Generating docs for file /<>/pwiz/utility/misc/SHA1.h... Generating docs for file /<>/pwiz/utility/misc/SHA1_ostream.hpp... Generating docs for file /<>/pwiz/utility/misc/SHA1_ostream_test.cpp... Generating docs for file /<>/pwiz/utility/misc/SHA1Calculator.hpp... Generating docs for file /<>/pwiz/utility/misc/SHA1CalculatorTest.cpp... Generating docs for file /<>/pwiz/utility/misc/shared_map.hpp... Generating docs for file /<>/pwiz/utility/misc/Singleton.hpp... Generating docs for file /<>/pwiz/utility/misc/Std.hpp... Generating docs for file /<>/pwiz/utility/misc/Stream.hpp... Generating docs for file /<>/pwiz/utility/misc/String.hpp... Generating docs for file /<>/pwiz/utility/misc/TabReader.hpp... Generating docs for file /<>/pwiz/utility/misc/TabReaderTest.cpp... Generating docs for file /<>/pwiz/utility/misc/Timer.hpp... Generating docs for file /<>/pwiz/utility/misc/unit.hpp... Generating docs for file /<>/pwiz/utility/misc/VendorReaderTestHarness.hpp... Generating docs for file /<>/pwiz/utility/misc/virtual_map.hpp... Generating docs for file /<>/pwiz/utility/proteome/IPIFASTADatabase.hpp... Generating docs for file /<>/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound AnotherRootHandler... Generating docs for compound BadListener... Generating docs for compound CancelListener... Generating docs for compound CancelProgressCallback... Generating docs for compound CSHA1... Generating docs for compound CubicHermiteSplineTest... Generating docs for compound CustomPair... Generating docs for compound Datum... Generating docs for compound DefaultArrayLengthSorter... Generating docs for compound DemuxDebugRWTest... Generating docs for compound DemuxHelpersTest... Generating docs for compound DemuxSolverTest... Generating docs for compound DemuxTest... Generating docs for nested compound DemuxTest::MSDPair... Generating docs for compound DigestedPeptideLessThan... Generating docs for compound EnumConstantNotPresentException... Generating docs for compound EnzymePtr_missedCleavages... Generating docs for compound EnzymePtr_specificity... Generating docs for compound EvenMS2Predicate... Generating docs for compound EvenPredicate... Generating docs for compound EvenRequester... Generating docs for compound Fifth... Generating docs for compound FifthHandler... Generating docs for compound FilterWrapper... Generating docs for compound First... Generating docs for compound FirstHandler... Generating docs for compound FTSieve... Generating docs for compound Goober... Generating docs for compound HasBinaryDataPredicate... Generating docs for compound IInterpolation... Generating docs for compound Is_T2D_Directory... Generating docs for compound IsDirectory... Generating docs for compound IsIMSData... Generating docs for compound isoChain... Generating docs for compound isotopeChain... Generating docs for compound IsRawData... Generating docs for compound IsRawFile... Generating docs for compound IsTDF... Generating docs for compound IsWiffFile... Generating docs for compound MatrixIOTest... Generating docs for compound MSDataWithSettableVersion... Generating docs for compound MSLevelSorter... Generating docs for compound MyBase... Generating docs for compound MyPred... Generating docs for compound MyWrapper... Generating docs for compound mzrtEqual... Generating docs for compound NestedHandler... Generating docs for compound OneMinusAbs... Generating docs for compound pairData... Generating docs for compound ParametrizedCosine... Generating docs for compound parentIon... Generating docs for compound precursorGroup... Generating docs for compound PrintAttribute... Generating docs for compound PrintEventHandler... Generating docs for compound RawMassDatum... Generating docs for compound Reader1... Generating docs for nested compound Reader1::Config... Generating docs for nested compound Reader1::ReaderConfig... Generating docs for compound Reader2... Generating docs for nested compound Reader2::Config... Generating docs for nested compound Reader2::ReaderConfig... Generating docs for compound ridgeLine... Generating docs for compound Root... Generating docs for compound RootHandler... Generating docs for compound rtimeMap... Generating docs for compound scoreChain... Generating docs for compound Second... Generating docs for compound SecondHandler... Generating docs for compound SelectedIndexPredicate... Generating docs for compound SetRetentionTime... Generating docs for compound SHA1_WORKSPACE_BLOCK... Generating docs for compound Simple... Generating docs for compound SimpleAnalyzer... Generating docs for compound SimpleProgressCallback... Generating docs for compound SpectrumPeakExtractorTest... Generating docs for compound TestAminoAcid... Generating docs for compound TestChargeStateCalculator... Generating docs for compound TestData... Generating docs for compound TestDatum... Generating docs for compound TestDeisotopeCalculator... Generating docs for compound TestDeisotoper... Generating docs for compound TestETDMassFilter... Generating docs for compound TestFormula... Generating docs for compound TestFragmentation... Generating docs for compound TestInfo... Generating docs for compound TestIterationListener... Generating docs for compound TestIterationListener_WithCancel... Generating docs for compound TestListener... Generating docs for compound TestMetadataFixer... Generating docs for compound TestModification... Generating docs for compound TestModifiedPeptide... Generating docs for compound TestMS2Denoise... Generating docs for compound TestOperator... Generating docs for compound TestOutputObserver... Generating docs for compound TestPair... Generating docs for compound TestPathmask... Generating docs for compound TestPeptide... Generating docs for compound TestReader... Generating docs for compound TestScanSummerCalculator... Generating docs for compound TestSpectrumInfo... Generating docs for compound TestThresholder... Generating docs for compound ThreadStatus... Generating docs for compound UserParamNameIs... Generating docs for compound WriteCVParam... Generating namespace index... Generating docs for namespace boost Generating docs for namespace boost::date_time Generating docs for namespace DemuxTypes Generating docs for namespace msclr Generating docs for compound msclr::pinned_gcroot... Generating docs for namespace pwiz Generating docs for compound pwiz::Version... Generating docs for namespace pwiz::analysis Generating docs for compound pwiz::analysis::ChromatogramList_Filter... Generating docs for nested compound pwiz::analysis::ChromatogramList_Filter::Predicate... Generating docs for compound pwiz::analysis::ChromatogramList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::ChromatogramList_LockmassRefiner... Generating docs for compound pwiz::analysis::ChromatogramList_SavitzkyGolaySmoother... Generating docs for compound pwiz::ana/<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp:92: warning: argument 'demuxWindows' from the argument list of pwiz::analysis::PrecursorMaskCodec::IdentifyOverlap has multiple @param documentation sections /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:37: warning: argument 'ppmError' of command @param is not found in the argument list of pwiz::analysis::SpectrumPeakExtractor::SpectrumPeakExtractor(const std::vector< double > &peakMzList, const pwiz::chemistry::MZTolerance &massError) /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:42: warning: The following parameter of pwiz::analysis::SpectrumPeakExtractor::SpectrumPeakExtractor(const std::vector< double > &peakMzList, const pwiz::chemistry::MZTolerance &massError) is not documented: parameter 'massError' lysis::ChromatogramList_XICGenerator... Generating docs for compound pwiz::analysis::ChromatogramListFactory... Generating docs for compound pwiz::analysis::ChromatogramListWrapper... Generating docs for compound pwiz::analysis::SavitzkyGolaySmoother... Generating docs for compound pwiz::analysis::CwtPeakDetector... Generating docs for compound pwiz::analysis::SpectrumDataFilter... Generating docs for compound pwiz::analysis::ChromatogramDataFilter... Generating docs for compound pwiz::analysis::ExtraZeroSamplesFilter... Generating docs for compound pwiz::analysis::LocalMaximumPeakDetector... Generating docs for compound pwiz::analysis::Peak... Generating docs for compound pwiz::analysis::PeakDetector... Generating docs for compound pwiz::analysis::Smoother... Generating docs for compound pwiz::analysis::WhittakerSmoother... Generating docs for compound pwiz::analysis::ZeroSampleFiller... Generating docs for compound pwiz::analysis::CubicHermiteSpline... Generating docs for compound pwiz::analysis::DemuxDebugReader... Generating docs for compound pwiz::analysis::DemuxDebugWriter... Generating docs for compound pwiz::analysis::DemuxSolver... Generating docs for compound pwiz::analysis::NNLSSolver... Generating docs for compound pwiz::analysis::IDemultiplexer... Generating docs for compound pwiz::analysis::IsoWindowHasher... Generating docs for compound pwiz::analysis::DemuxWindow... Generating docs for compound pwiz::analysis::IsolationWindow... Generating docs for compound pwiz::analysis::IPrecursorMaskCodec... Generating docs for compound pwiz::analysis::MatrixIO... Generating docs for compound pwiz::analysis::MSXDemultiplexer... Generating docs for nested compound pwiz::analysis::MSXDemultiplexer::Params... Generating docs for compound pwiz::analysis::OverlapDemultiplexer... Generating docs for nested compound pwiz::analysis::OverlapDemultiplexer::Params... Generating docs for compound pwiz::analysis::PrecursorMaskCodec... Generating docs for nested compound pwiz::analysis::PrecursorMaskCodec::DemuxBoundary... Generating docs for compound pwiz::analysis::SpectrumPeakExtractor... Generating docs for compound pwiz::analysis::MetadataReporter... Generating docs for compound pwiz::analysis::analyzer_strings< MetadataReporter >... Generating docs for compound pwiz::analysis::MSDataAnalyzer... Generating docs for nested compound pwiz::analysis::MSDataAnalyzer::DataInfo... Generating docs for compound pwiz::analysis::analyzer_strings... Generating docs for compound pwiz::analysis::MSDataAnalyzerContainer... Generating docs for compound pwiz::analysis::MSDataAnalyzerDriver... Generating docs for nested compound pwiz::analysis::MSDataAnalyzerDriver::ProgressCallback... Generating docs for compound pwiz::analysis::MSDataCache... Generating docs for nested compound pwiz::analysis::MSDataCache::Config... Generating docs for compound pwiz::analysis::PepxmlRecordReader... Generating docs for nested compound pwiz::analysis::PepxmlRecordReader::Config... Generating docs for nested compound pwiz::analysis::PepxmlRecordReader::record... Generating docs for compound pwiz::analysis::RegionAnalyzer... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::Config... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::SpectrumStats... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::Stats... Generating docs for compound pwiz::analysis::RegionSIC... Generating docs for nested compound pwiz::analysis::RegionSIC::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RegionSIC >... Generating docs for compound pwiz::analysis::RegionSlice... Generating docs for nested compound pwiz::analysis::RegionSlice::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RegionSlice >... Generating docs for compound pwiz::analysis::RegionTIC... Generating docs for nested compound pwiz::analysis::RegionTIC::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RegionTIC >... Generating docs for compound pwiz::analysis::RunSummary... Generating docs for nested compound pwiz::analysis::RunSummary::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RunSummary >... Generating docs for compound pwiz::analysis::SpectrumBinaryData... Generating docs for nested compound pwiz::analysis::SpectrumBinaryData::Config... Generating docs for compound pwiz::analysis::analyzer_strings< SpectrumBinaryData >... Generating docs for compound pwiz::analysis::SpectrumTable... Generating docs for nested compound pwiz::analysis::SpectrumTable::Config... Generating docs for compound pwiz::analysis::analyzer_strings< SpectrumTable >... Generating docs for compound pwiz::analysis::TabularConfig... Generating docs for compound pwiz::analysis::FeatureDetector... Generating docs for compound pwiz::analysis::FeatureDetectorPeakel... Generating docs for nested compound pwiz::analysis::FeatureDetectorPeakel::Config... Generating docs for compound pwiz::analysis::FeatureDetectorSimple... Generating docs for compound pwiz::analysis::FeatureModeler... Generating docs for compound pwiz::analysis::FeatureModeler_Gaussian... Generating docs for compound pwiz::analysis::MZRTField... Generating docs for compound pwiz::analysis::RTMatches_Any... Generating docs for compound pwiz::analysis::RTMatches_Contains... Generating docs for compound pwiz::analysis::RTMatches_IsContainedIn... Generating docs for compound pwiz::analysis::Noise... Generating docs for compound pwiz::analysis::NoiseCalculator... Generating docs for compound pwiz::analysis::NoiseCalculator_2Pass... Generating docs for nested compound pwiz::analysis::NoiseCalculator_2Pass::Config... Generating docs for compound pwiz::analysis::PeakelGrower... Generating docs for compound pwiz::analysis::PeakelGrower_Proximity... Generating docs for nested compound pwiz::analysis::PeakelGrower_Proximity::Config... Generating docs for compound pwiz::analysis::PeakelPicker... Generating docs for compound pwiz::analysis::PeakelPicker_Basic... Generating docs for nested compound pwiz::analysis::PeakelPicker_Basic::Config... Generating docs for compound pwiz::analysis::PeakExtractor... Generating docs for compound pwiz::analysis::PeakFamilyDetector... Generating docs for compound pwiz::analysis::PeakFamilyDetectorFT... Generating docs for nested compound pwiz::analysis::PeakFamilyDetectorFT::Config... Generating docs for nested compound pwiz::analysis::PeakFamilyDetectorFT::NoDataException... Generating docs for compound pwiz::analysis::PeakFinder... Generating docs for compound pwiz::analysis::PeakFinder_SNR... Generating docs for nested compound pwiz::analysis::PeakFinder_SNR::Config... Generating docs for compound pwiz::analysis::PeakFitter... Generating docs for compound pwiz::analysis::PeakFitter_Parabola... Generating docs for nested compound pwiz::analysis::PeakFitter_Parabola::Config... Generating docs for compound pwiz::analysis::ProteinList_DecoyGenerator... Generating docs for nested compound pwiz::analysis::ProteinList_DecoyGenerator::Predicate... Generating docs for compound pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Reversed... Generating docs for compound pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Shuffled... Generating docs for compound pwiz::analysis::ProteinList_Filter... Generating docs for nested compound pwiz::analysis::ProteinList_Filter::Predicate... Generating docs for compound pwiz::analysis::ProteinList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::ProteinList_FilterPredicate_IdSet... Generating docs for compound pwiz::analysis::ProteinListFactory... Generating docs for compound pwiz::analysis::MS2Deisotoper... Generating docs for nested compound pwiz::analysis::MS2Deisotoper::Config... Generating docs for compound pwiz::analysis::MS2NoiseFilter... Generating docs for nested compound pwiz::analysis::MS2NoiseFilter::Config... Generating docs for compound pwiz::analysis::PrecursorMassFilter... Generating docs for nested compound pwiz::analysis::PrecursorMassFilter::Config... Generating docs for compound pwiz::analysis::PrecursorRecalculator... Generating docs for nested compound pw/<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:56: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:56: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:57: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:61: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:63: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:65: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found iz::analysis::PrecursorRecalculator::PrecursorInfo... Generating docs for compound pwiz::analysis::PrecursorRecalculatorDefault... Generating docs for nested compound pwiz::analysis::PrecursorRecalculatorDefault::Config... Generating docs for compound pwiz::analysis::SpectrumList_3D... Generating docs for compound pwiz::analysis::SpectrumList_ChargeFromIsotope... Generating docs for compound pwiz::analysis::SpectrumList_ChargeStateCalculator... Generating docs for compound pwiz::analysis::SpectrumList_Demux... Generating docs for nested compound pwiz::analysis::SpectrumList_Demux::Params... Generating docs for compound pwiz::analysis::SpectrumList_Filter... Generating docs for nested compound pwiz::analysis::SpectrumList_Filter::Predicate... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_IdSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanEventSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_MSLevelSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ChargeStateSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_DefaultArrayLengthSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ActivationType... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_AnalyzerType... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_Polarity... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_MzPresent... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ThermoScanFilter... Generating docs for compound pwiz::analysis::SpectrumList_IonMobility... Generating docs for compound pwiz::analysis::SpectrumList_LockmassRefiner... Generating docs for compound pwiz::analysis::SpectrumList_MetadataFixer... Generating docs for compound pwiz::analysis::SpectrumList_MZRefiner... Generating docs for compound pwiz::analysis::SpectrumList_MZWindow... Generating docs for compound pwiz::analysis::SpectrumList_PeakFilter... Generating docs for compound pwiz::analysis::IsolationWindowFilter... Generating docs for compound pwiz::analysis::SpectrumList_PeakPicker... Generating docs for compound pwiz::analysis::NoVendorPeakPickingException... Generating docs for compound pwiz::analysis::SpectrumList_PrecursorRecalculator... Generating docs for compound pwiz::analysis::SpectrumList_PrecursorRefine... Generating docs for nested compound pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo... Generating docs for compound pwiz::analysis::SpectrumList_ScanSummer... Generating docs for compound pwiz::analysis::SpectrumList_Smoother... Generating docs for compound pwiz::analysis::SpectrumList_Sorter... Generating docs for nested compound pwiz::analysis::SpectrumList_Sorter::Predicate... Generating docs for compound pwiz::analysis::SpectrumList_SorterPredicate_ScanStartTime... Generating docs for compound pwiz::analysis::SpectrumList_TitleMaker... Generating docs for compound pwiz::analysis::SpectrumList_ZeroSamplesFilter... Generating docs for compound pwiz::analysis::SpectrumListFactory... Generating docs for compound pwiz::analysis::ThresholdFilter... Generating docs for compound pwiz::analysis::Version... Generating docs for namespace pwiz::chemistry Generating docs for compound pwiz::chemistry::MassAbundance... Generating docs for compound pwiz::chemistry::Formula... Generating docs for compound pwiz::chemistry::IsotopeCalculator... Generating docs for compound pwiz::chemistry::IsotopeEnvelopeEstimator... Generating docs for nested compound pwiz::chemistry::IsotopeEnvelopeEstimator::Config... Generating docs for compound pwiz::chemistry:/<>/pwiz/data/common/diff_std.hpp:126: warning: expected whitespace after \a command /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' :IsotopeTable... Generating docs for compound pwiz::chemistry::MZTolerance... Generating docs for namespace pwiz::chemistry::detail Generating docs for compound pwiz::chemistry::detail::Isotope... Generating docs for compound pwiz::chemistry::detail::Element... Generating docs for namespace pwiz::chemistry::Element Generating docs for namespace pwiz::chemistry::Element::Info Generating docs for compound pwiz::chemistry::Element::Info::Record... Generating docs for namespace pwiz::chemistry::Ion Generating docs for namespace pwiz::cv Generating docs for compound pwiz::cv::CV... Generating docs for compound pwiz::cv::CVTermInfo... Generating docs for namespace pwiz::data Generating docs for compound pwiz::data::BinaryIndexStream... Generating docs for compound pwiz::data::CVTranslator... Generating docs for compound pwiz::data::BaseDiffConfig... Generating docs for compound pwiz::data::Diff... Generating docs for compound pwiz::data::Index... Generating docs for nested compound pwiz::data::Index::Entry... Generating docs for compound pwiz::data::MemoryIndex... Generating docs for compound pwiz::data::Term... Generating docs for compound pwiz::data::OBO... Generating docs for compound pwiz::data::CVParam... Generating docs for compound pwiz::data::CVParamIs... Generating docs for compound pwiz::data::CVParamIsChildOf... Generating docs for compound pwiz::data::UserParam... Generating docs for compound pwiz::data::ParamContainer... Generating docs for compound pwiz::data::ParamGroup... Generating docs for compound pwiz::data::CalibrationParameters... Generating docs for compound pwiz::data::FrequencyData... Generating docs for compound pwiz::data::SampleDatum... Generating docs for namespace pwiz::data::diff_impl Generating docs for compound pwiz::data::diff_impl::HasID... Generating docs for compound pwiz::data::diff_impl::Same... Generating docs for compound pwiz::data::diff_impl::SameDeep... Generating docs for namespace pwiz::data::peakdata Generating docs for compound pwiz::data::peakdata::Peak... Generating docs for compound pwiz::data::peakdata::HandlerPeak... Generating docs for compound pwiz::data::peakdata::PeakFamily... Generating docs for compound pwiz::data::peakdata::Scan... Generating docs for compound pwiz::data::peakdata::Software... Generating docs for nested compound pwiz::data::peakdata::Software::Parameter... Generating docs for compound pwiz::data::peakdata::PeakData... Generating docs for compound pwiz::data::peakdata::Peakel... Generating docs for compound pwiz::data::peakdata::HandlerPeakel... Generating docs for compound pwiz::data::peakdata::Feature... Generating docs for compound pwiz::data::peakdata::HandlerFeature... Generating docs for compound pwiz::data::peakdata::FeatureFile... Generating docs for namespace pwiz::data::pepxml Generating docs for compound pwiz::data::pepxml::Specificity... Generating docs for compound pwiz::data::pepxml::SampleEnzyme... Generating docs for compound pwiz::data::pepxml::SearchDatabase... Generating docs for compound pwiz::data::pepxml::Q3RatioResult... Generating docs for compound pwiz::data::pepxml::RocDataPoint... Generating docs for compound pwiz::data::pepxml::ErrorPoint... Generating docs for compound pwiz::data::pepxml::DistributionPoint... Generating docs for compound pwiz::data::pepxml::MixtureModel... Generating docs for compound pwiz::data::pepxml::PeptideProphetSummary... Generating docs for compound pwiz::data::pepxml::PeptideProphetResult... Generating docs for compound pwiz::data::pepxml::AnalysisResult... Generating docs for compound pwiz::data::pepxml::AlternativeProtein... Generating docs for compound pwiz::data::pepxml::ModAminoAcidMass... Generating docs for compound pwiz::data::pepxml::ModificationInfo... Generating docs for compound pwiz::data::pepxml::Parameter... Generating docs for compound pwiz::data::pepxml::SearchScore... Generating docs for compound pwiz::data::pepxml::SearchHit... Generating docs for compound pwiz::data::pepxml::SearchResult... Generating docs for compound pwiz::data::pepxml::EnzymaticSearchConstraint... Generating /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' docs for compound pwiz::data::pepxml::AminoAcidModification... Generating docs for compound pwiz::data::pepxml::SearchSummary... Generating docs for compound pwiz::data::pepxml::AnalysisTimestamp... Generating docs for compound pwiz::data::pepxml::SpectrumQuery... Generating docs for compound pwiz::data::pepxml::MSMSRunSummary... Generating docs for compound pwiz::data::pepxml::AnalysisSummary... Generating docs for compound pwiz::data::pepxml::DataFilter... Generating docs for compound pwiz::data::pepxml::DatasetDerivation... Generating docs for compound pwiz::data::pepxml::MSMSPipelineAnalysis... Generating docs for compound pwiz::data::pepxml::Match... Generating docs for compound pwiz::data::pepxml::MatchData... Generating docs for namespace pwiz::data::SampleDatumConstant Generating docs for namespace pwiz::data::unimod Generating docs for namespace pwiz::frequency Generating docs for compound pwiz::frequency::FrequencyEstimator... Generating docs for compound pwiz::frequency::FrequencyEstimatorPhysicalModel... Generating docs for nested compound pwiz::frequency::FrequencyEstimatorPhysicalModel::Config... Generating docs for compound pwiz::frequency::FrequencyEstimatorSimple... Generating docs for compound pwiz::frequency::MagnitudeLorentzian... Generating docs for compound pwiz::frequency::ParameterEstimator... Generating docs for compound pwiz::frequency::ParametrizedFunction... Generating docs for nested compound pwiz::frequency::ParametrizedFunction::ErrorFunction... Generating docs for compound pwiz::frequency::PeakDetector... Generating docs for compound pwiz::frequency::PeakDetectorMatchedFilter... Generating docs for nested compound pwiz::frequency::PeakDetectorMatchedFilter::Config... Generating docs for nested compound pwiz::frequency::PeakDetectorMatchedFilter::Score... Generating docs for compound pwiz::frequency::PeakDetectorNaive... Generating docs for compound pwiz::frequency::TruncatedLorentzian... Generating docs for compound pwiz::frequency::TruncatedLorentzianEstimator... Generating docs for compound pwiz::frequency::TruncatedLorentzianParameters... Generating docs for namespace pwiz::frequency::DerivativeTest Generating docs for compound pwiz::frequency::DerivativeTest::VectorFunction... Generating docs for compound pwiz::frequency::DerivativeTest::ParametrizedFunctionSlice... Generating docs for compound pwiz::frequency::DerivativeTest::ParametrizedDerivativeSlice... Generating docs for compound pwiz::frequency::DerivativeTest::AdaptedErrorFunction... Generating docs for compound pwiz::frequency::DerivativeTest::AdaptedErrorDerivative... Generating docs for namespace pwiz::identdata Generating docs for compound pwiz::identdata::DefaultReaderList... Generating docs for compound pwiz::identdata::DelimReader... Generating docs for compound pwiz::identdata::DelimWriter... Generating docs for compound pwiz::identdata::DiffConfig... Generating docs for compound pwiz::identdata::Identifiable... Generating docs for compound pwiz::identdata::IdentifiableParamContainer... Generating docs for compound pwiz::identdata::BibliographicReference... Generating docs for compound pwiz::identdata::Contact... Generating docs for compound pwiz::identdata::Organization... Generating docs for compound pwiz::identdata::Person... Generating docs for compound pwiz::identdata::ContactRole... Generating docs for compound pwiz::identdata::Sample... Generating docs for compound pwiz::identdata::AnalysisSoftware... Generating docs for compound pwiz::identdata::Provider... Generating docs for compound pwiz::identdata::AnalysisSampleCollection... Generating docs for compound pwiz::identdata::SearchDatabase... Generating docs for compound pwiz::identdata::DBSequence... Generating docs for compound pwiz::identdata::Modification... Generating docs for compound pwiz::identdata::SubstitutionModification... Generating docs for compound pwiz::identdata::Peptide... Generating docs for compound pwiz::identdata::SearchModification... Generating docs for compound pwiz::identdata::Enzyme... Generating docs for compound pwiz::identdata::Enzymes... Generating docs for compound pwiz::identdata::Residue... Generating docs for compound pwiz::identdata::AmbiguousResidue... Generating docs for compound pwiz::identdata::MassTable... Generating docs for compound pwiz::identdata::Filter... Generating docs for compound pwiz::identdata::TranslationTable... Generating docs for compound pwiz::identdata::DatabaseTranslation... Generating docs for compound pwiz::identdata::SpectrumIdentificationProtocol... Generating docs for compound pwiz::identdata::Measure... Generating docs for compound pwiz::identdata::FragmentArray... Generating docs for compound pwiz::identdata::IonType... Generating docs for compound pwiz::identdata::PeptideEvidence... Generating docs for compound pwiz::identdata::SequenceCollection... Generating docs for compound pwiz::identdata::SpectrumIdentificationItem... Generating docs for compound pwiz::identdata::SpectraData... Generating docs for compound pwiz::identdata::SpectrumIdentificationResult... Generating docs for compound pwiz::identdata::SpectrumIdentificationList... Generating docs for compound pwiz::identdata::SpectrumIdentification... Generating docs for compound pwiz::identdata::ProteinDetectionProtocol... Generating docs for compound pwiz::identdata::PeptideHypothesis... Generating docs for compound pwiz::identdata::ProteinDetectionHypothesis... Generating docs for compound pwiz::identdata::ProteinAmbiguityGroup... Generating docs for compound pwiz::identdata::ProteinDetectionList... Generating docs for compound pwiz::identdata::ProteinDetection... Generating docs for compound pwiz::identdata::AnalysisCollection... Generating docs for compound pwiz::identdata::AnalysisProtocolCollection... Generating docs for compound pwiz::identdata::SourceFile... Generating docs for compound pwiz::identdata::Inputs... Generating docs for compound pwiz::identdata::AnalysisData... Generating docs for compound pwiz::identdata::DataCollection... Generating docs for compound pwiz::identdata::IdentData... Generating docs for compound pwiz::identdata::IdentDataFile... Generating docs for nested compound pwiz::identdata::IdentDataFile::WriteConfig... Generating docs for compound pwiz::identdata::CVMap... Generating docs for compound pwiz::identdata::RegexCVMap... Generating docs for compound pwiz::identdata::StringMatchCVMap... Generating docs for compound pwiz::identdata::CVIDMatchCVMap... Generating docs for compound pwiz::identdata::MascotReader... Generating docs for compound pwiz::identdata::id_p... Generating docs for compound pwiz::identdata::software_p... Generating docs for compound pwiz::identdata::sequence_p... Generating docs for compound pwiz::identdata::seq_p... Generating docs for compound pwiz::identdata::dbsequence_p... Generating docs for compound pwiz::identdata::organization_p... Generating docs for compound pwiz::identdata::person_p... Generating docs for compound pwiz::identdata::Pep2MzIdent... Generating docs for compound pwiz::identdata::Reader... Generating docs for nested compound pwiz::identdata::Reader::Config... Generating docs for compound pwiz::identdata::ReaderFail... Generating docs for compound pwiz::identdata::ReaderList... Generating docs for compound pwiz::identdata::Serializer_mzIdentML... Generating docs for nested compound pwiz::identdata::Serializer_mzIdentML::Config... Generating docs for compound pwiz::identdata::Serializer_pepXML... Generating docs for nested compound pwiz::identdata::Serializer_pepXML::Config... Generating docs for compound pwiz::identdata::PepXMLSpecificity... Generating docs for compound pwiz::identdata::Serializer_protXML... Generating docs for nested compound pwiz::identdata::Serializer_protXML::Config... Generating docs for compound pwiz::identdata::Serializer_Text... Generating docs for nested compound pwiz::identdata::Serializer_Text::Config... Generating docs for compound pwiz::identdata::TextWriter... Generating docs for compound pwiz::identdata::Version... Generating docs for namespace pwiz::identdata::examples Generating docs for namespace pwiz::identdata::IO Generating docs for namespace /<>/pwiz/data/msdata/LegacyAdapter.hpp:51: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/LegacyAdapter.hpp:94: warning: Unsupported xml/html tag found pwiz::identdata::References Generating docs for namespace pwiz::math Generating docs for compound pwiz::math::LinearLeastSquares... Generating docs for compound pwiz::math::LinearLeastSquares< LinearLeastSquaresType_LU >... Generating docs for compound pwiz::math::LinearLeastSquares< LinearLeastSquaresType_QR >... Generating docs for compound pwiz::math::LinearSolver... Generating docs for compound pwiz::math::LinearSolver< LinearSolverType_LU >... Generating docs for compound pwiz::math::LinearSolver< LinearSolverType_QR >... Generating docs for compound pwiz::math::OrderedPair... Generating docs for compound pwiz::math::OrderedPairContainerRef... Generating docs for compound pwiz::math::Parabola... Generating docs for compound pwiz::math::Stats... Generating docs for namespace pwiz::math::MatchedFilter Generating docs for compound pwiz::math::MatchedFilter::ProductSpace... Generating docs for compound pwiz::math::MatchedFilter::SampledData... Generating docs for compound pwiz::math::MatchedFilter::KernelTraitsBase... Generating docs for compound pwiz::math::MatchedFilter::KernelTraitsBase< Y(*)(X)>... Generating docs for compound pwiz::math::MatchedFilter::Correlation... Generating docs for compound pwiz::math::MatchedFilter::KernelTraits... Generating docs for nested compound pwiz::math::MatchedFilter::KernelTraits::Dummy... Generating docs for namespace pwiz::math::MatchedFilter::details Generating docs for namespace pwiz::math::types Generating docs for namespace pwiz::minimxml Generating docs for compound pwiz::minimxml::XMLWriter... Generating docs for nested compound pwiz::minimxml::XMLWriter::Attributes... Generating docs for nested compound pwiz::minimxml::XMLWriter::Config... Generating docs for nested compound pwiz::minimxml::XMLWriter::OutputObserver... Generating docs for compound pwiz::minimxml::basic_charcounter... Generating docs for nested compound pwiz::minimxml::basic_charcounter::category... Generating docs for namespace pwiz::minimxml::SAXParser Generating docs for compound pwiz::minimxml::SAXParser::saxstring... Generating docs for compound pwiz::minimxml::SAXParser::Handler... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Attributes... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Attributes::attribute... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Status... Generating docs for namespace pwiz::msdata Generating docs for compound pwiz::msdata::BinaryDataEncoder... Generating docs for nested compound pwiz::msdata::BinaryDataEncoder::Config... Generating docs for compound pwiz::msdata::ChromatogramList_mzML... Generating docs for compound pwiz::msdata::ChromatogramListBase... Generating docs for compound pwiz::msdata::Reader_mzML... Generating docs for compound pwiz::msdata::Reader_mzXML... Generating docs for compound pwiz::msdata::Reader_MGF... Generating docs for compound pwiz::msdata::Reader_MSn... Generating docs for compound pwiz::msdata::Reader_BTDX... Generating docs for compound pwiz::msdata::Reader_mz5... Generating docs for compound pwiz::msdata::DefaultReaderList... Generating docs for compound pwiz::msdata::DiffConfig... Generating docs for compound pwiz::msdata::Index_mzML... Generating docs for compound pwiz::msdata::SpectrumIdentityFromXML... Generating docs for compound pwiz::msdata::SpectrumIdentityFromMzXML... Generating docs for compound pwiz::msdata::LegacyAdapter_Instrument... Generating docs for compound pwiz::msdata::LegacyAdapter_Software... Generating docs for compound pwiz::msdata::MemoryMRUCache... Generating docs for compound pwiz::msdata::FileContent... Generating docs for compound pwiz::msdata::SourceFile... Generating docs for compound pwiz::msdata::Contact... Generating docs for compound pwiz::msdata::FileDescription... Generating docs for compound pwiz::msdata::Sample... Generating docs for compound pwiz::msdata::Component... Generating docs for compound pwiz::msdata::ComponentList... Generating docs for compound pwiz::msdata::Software... Generating docs for compound pwiz::msdata::Target./<>/pwiz/data/msdata/MSData.hpp:858: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/MSData.hpp:858: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/MSData.hpp:858: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found .. Generating docs for compound pwiz::msdata::ScanSettings... Generating docs for compound pwiz::msdata::InstrumentConfiguration... Generating docs for compound pwiz::msdata::ProcessingMethod... Generating docs for compound pwiz::msdata::DataProcessing... Generating docs for compound pwiz::msdata::IsolationWindow... Generating docs for compound pwiz::msdata::SelectedIon... Generating docs for compound pwiz::msdata::Activation... Generating docs for compound pwiz::msdata::Precursor... Generating docs for compound pwiz::msdata::Product... Generating docs for compound pwiz::msdata::ScanWindow... Generating docs for compound pwiz::msdata::Scan... Generating docs for compound pwiz::msdata::ScanList... Generating docs for compound pwiz::msdata::BinaryDataArray... Generating docs for compound pwiz::msdata::MZIntensityPair... Generating docs for compound pwiz::msdata::TimeIntensityPair... Generating docs for compound pwiz::msdata::SpectrumIdentity... Generating docs for compound pwiz::msdata::ChromatogramIdentity... Generating docs for compound pwiz::msdata::Spectrum... Generating docs for compound pwiz::msdata::Chromatogram... Generating docs for compound pwiz::msdata::IndexList... Generating docs for compound pwiz::msdata::SpectrumList... Generating docs for compound pwiz::msdata::SpectrumListSimple... Generating docs for compound pwiz::msdata::ChromatogramList... Generating docs for compound pwiz::msdata::ChromatogramListSimple... Generating docs for compound pwiz::msdata::Run... Generating docs for compound pwiz::msdata::MSData... Generating docs for compound pwiz::msdata::MSDataFile... Generating docs for nested compound pwiz::msdata::MSDataFile::WriteConfig... Generating docs for compound pwiz::msdata::MSDataMerger... Generating docs for compound pwiz::msdata::Reader... Generating docs for nested compound pwiz::msdata::Reader::Config... Generating docs for compound pwiz::msdata::ReaderFail... Generating docs for compound pwiz::msdata::ReaderList... Generating docs for compound pwiz::msdata::Serializer_MGF... Generating docs for compound pwiz::msdata::Serializer_MSn... Generating docs for compound pwiz::msdata::Serializer_mzML... Generating docs for nested compound pwiz::msdata::Serializer_mzML::Config... Generating docs for compound pwiz::msdata::Serializer_mzXML... Generating docs for nested compound pwiz::msdata::Serializer_mzXML::Config... Generating docs for compound pwiz::msdata::SHA1OutputObserver... Generating docs for compound pwiz::msdata::SpectrumInfo... Generating docs for nested compound pwiz::msdata::SpectrumInfo::PrecursorInfo... Generating docs for compound pwiz::msdata::SpectrumIterator... Generating docs for nested compound pwiz::msdata::SpectrumIterator::Config... Generating docs for nested compound pwiz::msdata::SpectrumIterator::Sieve... Generating docs for compound pwiz::msdata::SpectrumList_BTDX... Generating docs for compound pwiz::msdata::SpectrumList_MGF... Generating docs for compound pwiz::msdata::MSnHeader... Generating docs for compound pwiz::msdata::SpectrumList_MSn... Generating docs for compound pwiz::msdata::SpectrumList_mzML... Generating docs for compound pwiz::msdata::SpectrumList_mzXML... Generating docs for nested compound pwiz::msdata::SpectrumList_mzXML::index_not_found... Generating docs for compound pwiz::msdata::SpectrumListBase... Generating docs for compound pwiz::msdata::SpectrumListIonMobilityBase... Generating docs for compound pwiz::msdata::SpectrumListCache... Generating docs for nested compound pwiz::msdata::SpectrumListCache::CacheEntry... Generating docs for compound pwiz::msdata::SpectrumListWrapper... Generating docs for compound pwiz::msdata::SpectrumWorkerThreads... Generating docs for compound pwiz::msdata::TextWriter... Generating docs for compound pwiz::msdata::Version... Generating docs for compound pwiz::msdata::Reader_ABI... Generating docs for compound pwiz::msdata::Reader_ABI_T2D... Generating docs for compound pwiz::msdata::Reader_Agilent... Generating docs for compound pwiz::msdata::Reader_Bruker... Generating docs for compound pwiz::msdata::ExtendedReaderL/<>/pwiz/data/msdata/MSNumpress.hpp:81: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:82: warning: Found unknown command '@dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:84: warning: Found unknown command '@fixedPoint' /<>/pwiz/data/msdata/MSNumpress.hpp:99: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:118: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:119: warning: Found unknown command '@dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:131: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:147: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:148: warning: Found unknown command '@dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:161: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:173: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:174: warning: Found unknown command '@dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:185: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:210: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:211: warning: Found unknown command '@dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:226: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:237: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:238: warning: Found unknown command '@dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:250: warning: Found unknown command '@data' /<>/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found ist... Generating docs for compound pwiz::msdata::Reader_Shimadzu... Generating docs for compound pwiz::msdata::Reader_Thermo... Generating docs for compound pwiz::msdata::Reader_UIMF... Generating docs for compound pwiz::msdata::Reader_UNIFI... Generating docs for compound pwiz::msdata::Reader_Waters... Generating docs for namespace pwiz::msdata::detail Generating docs for compound pwiz::msdata::detail::ChromatogramList_ABI... Generating docs for compound pwiz::msdata::detail::SpectrumList_ABI... Generating docs for compound pwiz::msdata::detail::SpectrumList_ABI_T2D... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Agilent... Generating docs for compound pwiz::msdata::detail::SpectrumList_Agilent... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Bruker... Generating docs for compound pwiz::msdata::detail::SpectrumList_Bruker... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Shimadzu... Generating docs for compound pwiz::msdata::detail::SpectrumList_Shimadzu... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Thermo... Generating docs for compound pwiz::msdata::detail::SpectrumList_Thermo... Generating docs for compound pwiz::msdata::detail::SpectrumList_UIMF... Generating docs for compound pwiz::msdata::detail::SpectrumList_UNIFI... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Waters... Generating docs for compound pwiz::msdata::detail::SpectrumList_Waters... Generating docs for nested compound pwiz::msdata::detail::SpectrumList_Waters::VendorOptions... Generating docs for namespace pwiz::msdata::detail::Bruker Generating docs for namespace pwiz::msdata::detail::Thermo Generating docs for namespace pwiz::msdata::examples Generating docs for namespace pwiz::msdata::id Generating docs for namespace pwiz::msdata::IO Generating docs for namespace pwiz::msdata::MSNumpress Generating docs for namespace pwiz::msdata::References Generating docs for namespace pwiz::peptideid Generating docs for compound pwiz::peptideid::PeptideID... Generating docs for nested compound pwiz::peptideid::PeptideID::Iterator... Generating docs for nested compound pwiz::peptideid::PeptideID::IteratorInternal... Generating docs for nested compound pwiz::peptideid::PeptideID::Location... Generating docs for nested compound pwiz::peptideid::PeptideID::Record... Generating docs for compound pwiz::peptideid::nativeID_less... Generating docs for compound pwiz::peptideid::location_less... Generating docs for compound pwiz::peptideid::FlatRecordBuilder... Generating docs for compound pwiz::peptideid::MSInspectRecordBuilder... Generating docs for compound pwiz::peptideid::PeptideID_flat... Generating docs for compound pwiz::peptideid::PeptideID_pepXml... Generating docs for compound pwiz::peptideid::PeptideIDMap... Generating docs for namespace pwiz::proteome Generating docs for compound pwiz::proteome::DefaultReaderList... Generating docs for compound pwiz::proteome::DiffConfig... Generating docs for compound pwiz::proteome::DigestedPeptide... Generating docs for compound pwiz::proteome::Digestion... Generating docs for nested compound pwiz::proteome::Digestion::Config... Generating docs for nested compound pwiz::proteome::Digestion::const_iterator... Generating docs for compound pwiz::proteome::Modification... Generating docs for compound pwiz::proteome::ModificationList... Generating docs for compound pwiz::proteome::ModificationMap... Generating docs for compound pwiz::proteome::Peptide... Generating docs for compound pwiz::proteome::Fragmentation... Generating docs for compound pwiz::proteome::ProteinListCache... Generating docs for compound pwiz::proteome::ProteinListWrapper... Generating docs for compound pwiz::proteome::Protein... Generating docs for compound pwiz::proteome::IndexList... Generating docs for compound pwiz::proteome::ProteinList... Generating docs for compound pwiz::proteome::ProteinListSimple... Generating docs for compound pwiz::proteome::ProteomeData... Generating docs for compound pwiz::proteome::ProteomeDataFile... Generating d/<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:355: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:355: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found ocs for nested compound pwiz::proteome::ProteomeDataFile::WriteConfig... Generating docs for compound pwiz::proteome::Reader... Generating docs for compound pwiz::proteome::ReaderFail... Generating docs for compound pwiz::proteome::ReaderList... Generating docs for compound pwiz::proteome::Reader_FASTA... Generating docs for nested compound pwiz::proteome::Reader_FASTA::Config... Generating docs for compound pwiz::proteome::Serializer_FASTA... Generating docs for nested compound pwiz::proteome::Serializer_FASTA::Config... Generating docs for compound pwiz::proteome::TextWriter... Generating docs for compound pwiz::proteome::Version... Generating docs for compound pwiz::proteome::IPIFASTADatabase... Generating docs for nested compound pwiz::proteome::IPIFASTADatabase::Record... Generating docs for namespace pwiz::proteome::AminoAcid Generating docs for namespace pwiz::proteome::AminoAcid::Info Generating docs for compound pwiz::proteome::AminoAcid::Info::Record... Generating docs for namespace pwiz::proteome::examples Generating docs for namespace pwiz::tradata Generating docs for compound pwiz::tradata::DefaultReaderList... Generating docs for compound pwiz::tradata::DiffConfig... Generating docs for compound pwiz::tradata::Reader... Generating docs for compound pwiz::tradata::ReaderFail... Generating docs for compound pwiz::tradata::ReaderList... Generating docs for compound pwiz::tradata::Serializer_traML... Generating docs for compound pwiz::tradata::TextWriter... Generating docs for compound pwiz::tradata::Contact... Generating docs for compound pwiz::tradata::Publication... Generating docs for compound pwiz::tradata::Software... Generating docs for compound pwiz::tradata::RetentionTime... Generating docs for compound pwiz::tradata::Prediction... Generating docs for compound pwiz::tradata::Evidence... Generating docs for compound pwiz::tradata::Validation... Generating docs for compound pwiz::tradata::Instrument... Generating docs for compound pwiz::tradata::Configuration... Generating docs for compound pwiz::tradata::Interpretation... Generating docs for compound pwiz::tradata::Protein... Generating docs for compound pwiz::tradata::Modification... Generating docs for compound pwiz::tradata::Peptide... Generating docs for compound pwiz::tradata::Compound... Generating docs for compound pwiz::tradata::Precursor... Generating docs for compound pwiz::tradata::Product... Generating docs for compound pwiz::tradata::Transition... Generating docs for compound pwiz::tradata::Target... Generating docs for compound pwiz::tradata::TargetList... Generating docs for compound pwiz::tradata::TraData... Generating docs for compound pwiz::tradata::TraDataFile... Generating docs for nested compound pwiz::tradata::TraDataFile::WriteConfig... Generating docs for compound pwiz::tradata::Version... Generating docs for namespace pwiz::tradata::examples Generating docs for namespace pwiz::tradata::IO Generating docs for namespace pwiz::tradata::References Generating docs for namespace pwiz::util Generating docs for compound pwiz::util::BinaryData... Generating docs for nested compound pwiz::util::BinaryData::const_iterator... Generating docs for nested compound pwiz::util::BinaryData::iterator... Generating docs for compound pwiz::util::CharIndexedVectorIterator... Generating docs for compound pwiz::util::CharIndexedVectorConstIterator... Generating docs for compound pwiz::util::CharIndexedVector... Generating docs for compound pwiz::util::ClickwrapPrompter... Generating docs for compound pwiz::util::Lock... Generating docs for compound pwiz::util::usage_exception... Generating docs for compound pwiz::util::user_error... Generating docs for compound pwiz::util::Image... Generating docs for nested compound pwiz::util::Image::Color... Generating docs for nested compound pwiz::util::Image::Point... Generating docs for compound pwiz::util::IntegerSet... Generating docs for nested compound pwiz::util::IntegerSet::Interval... Generating docs for nested compound pwiz::util::IntegerSet::Iterator... Generating docs for compound pwiz::util::Iteration/<>/pwiz/utility/findmf/base/base/cumsum.hpp:40: warning: The following parameter of ralab::base::cumsum(TIterator beg, TIterator end, std::vector< T > &res) is not documented: parameter 'end' /<>/pwiz/utility/findmf/base/base/cumsum.hpp:63: warning: The following parameter of ralab::base::cumsum(TIterator beg, TIterator end) is not documented: parameter 'end' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:58: warning: The following parameters of ralab::base::base::interpolate_linear(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:83: warning: The following parameters of ralab::base::base::interpolate_cosine(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0) are not documented: parameter 'endY' parameter 'endX' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:105: warning: The following parameters of ralab::base::base::interpolate_cubic(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:130: warning: The following parameters of ralab::base::base::interpolate_Hermite(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, double tension=0, double bias=0, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:199: warning: The following parameters of ralab::base::base::utilities::interpolateCubicHermite(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, TFunctor &functor, int start_index=0) are not documented: parameter 'begY' parameter 'endY' parameter 'begX' parameter 'endX' parameter 'start_index' /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:283: warning: The following parameters of ralab::base::base::utilities::interpolateLinearCosine(YInputIterator y_p, YInputIterator endY, XInputIterator x_p, XInputIterator endX, OutputIterator out_p, TFunctor &interpolator, int start_index=0) are not documented: parameter 'endY' parameter 'endX' /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:149: warning: The following parameter of ralab::base::base::utilities::HermiteInterpolate::HermiteInterpolate(TReal tension, TReal bias, TReal epsilon=std::numeric_limits< TReal >::epsilon()) is not documented: parameter 'epsilon' /<>/pwiz/utility/findmf/base/filter/filter.hpp:49: warning: The following parameters of ralab::base::filter::filter_sequence(TIterator dataBeg, TIterator dataEnd, TFilterIterator filterBeg, size_t fsize, TOutputIterator resBeg, bool circular=false, uint32_t sides=2) are not documented: parameter 'dataEnd' parameter 'fsize' /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp:102: warning: The following parameter of ralab::base::filter::getGaussian1DerFilterQuantile(std::vector< TReal > &gauss1d, TReal fwhm=20, TReal quantile=0.1) is not documented: parameter 'quantile' /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp:39: warning: The following parameters of ralab::base::filter::utilities::prepareData(TIterator dataBeg, TIterator dataEnd, size_t fsize, TContainer &res, bool mirror=false) are not documented: parameter 'dataBeg' parameter 'dataEnd' parameter 'fsize' /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp:81: warning: The following parameter of ralab::base::ms::LocalMinPeakArea::LocalMinPeakArea(TReal integwith, TReal threshold=.1) is not documented: parameter 'threshold' /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp:177: warning: The following parameter of ralab::base::ms::PeakPicker::PeakPicker(TReal resolution, std::pair< TReal, TReal > &massrange, TReal width=2., TReal intwidth=2., TReal intensitythreshold=10., bool area=true, uint32_t maxnumberofpeaks=0, double c2d=1e-5) is not documented: parameter 'intensitythreshold' /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp:49: warning: The following parameters of ralab::base::ms::SimplePicker::operator()(Tit beg, Tit end, Outit zerocrossings, size_t nzercross, std::ptrdiff_t lag=2) are not documented: parameter 'beg' parameter 'end' parameter 'zerocrossings' parameter 'lag' /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp:36: warning: Found unknown command '\given' /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp:83: warning: Found unknown command '\Assignment' /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp:96: warning: The following parameters of ralab::base::resample::Bucket1D::operator()(InputIterator beg, InputIterator end, std::vector< std::pair< std::size_t, std::size_t > > &bucketPairs) are not documented: parameter 'end' parameter 'bucketPairs' /<>/pwiz/utility/findmf/base/base/scale.hpp:77: warning: The following parameters of ralab::base::stats::scale(InputIterator begin, InputIterator end, std::pair< typename std::iterator_traits< InputIterator >::value_type, typename std::iterator_traits< InputIterator >::value_type > &scaled, bool center=true, bool scale=true) are not documented: parameter 'begin' parameter 'end' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' Listener... Generating docs for nested compound pwiz::util::IterationListener::UpdateMessage... Generating docs for compound pwiz::util::IterationListenerRegistry... Generating docs for compound pwiz::util::mru_list... Generating docs for compound pwiz::util::MSIHandler... Generating docs for nested compound pwiz::util::MSIHandler::Record... Generating docs for compound pwiz::util::once_flag_proxy... Generating docs for compound pwiz::util::random_access_compressed_ifstream... Generating docs for compound pwiz::util::SHA1SymmetricFilter... Generating docs for compound pwiz::util::SHA1Filter... Generating docs for compound pwiz::util::SHA1_ostream... Generating docs for compound pwiz::util::SHA1Calculator... Generating docs for compound pwiz::util::shared_map... Generating docs for compound pwiz::util::TabHandler... Generating docs for compound pwiz::util::DefaultTabHandler... Generating docs for compound pwiz::util::VectorTabHandler... Generating docs for compound pwiz::util::TabReader... Generating docs for compound pwiz::util::Timer... Generating docs for compound pwiz::util::TestPathPredicate... Generating docs for compound pwiz::util::ReaderTestConfig... Generating docs for compound pwiz::util::virtual_map... Generating docs for namespace pwiz::util::Base64 Generating docs for namespace pwiz::util::env Generating docs for namespace pwiz::vendor_api Generating docs for namespace pwiz::vendor_api::Bruker Generating docs for namespace ralab Generating docs for namespace ralab::base Generating docs for namespace ralab::base::base Generating docs for namespace ralab::base::base::utilities Generating docs for compound ralab::base::base::utilities::SeqPlus... Generating docs for compound ralab::base::base::utilities::SeqMinus... Generating docs for compound ralab::base::base::utilities::LinearInterpolate... Generating docs for compound ralab::base::base::utilities::CosineInterpolate... Generating docs for compound ralab::base::base::utilities::CubicInterpolate... Generating docs for compound ralab::base::base::utilities::HermiteInterpolate... Generating docs for namespace ralab::base::filter Generating docs for namespace ralab::base::filter::utilities Generating docs for compound ralab::base::filter::utilities::Gauss... Generating docs for compound ralab::base::filter::utilities::Gauss_1deriv... Generating docs for compound ralab::base::filter::utilities::Mexican_Hat... Generating docs for compound ralab::base::filter::utilities::Mexican_Hat2... Generating docs for namespace ralab::base::ms Generating docs for compound ralab::base::ms::SimplePeakArea... Generating docs for compound ralab::base::ms::LocalMinPeakArea... Generating docs for compound ralab::base::ms::PeakPicker... Generating docs for compound ralab::base::ms::SimplePicker... Generating docs for namespace ralab::base::resample Generating docs for compound ralab::base::resample::Bin1D... Generating docs for compound ralab::base::resample::Bucket1D... Generating docs for compound ralab::base::resample::Convert2Dense... Generating docs for compound ralab::base::resample::SquareRoot... Generating docs for compound ralab::base::resample::SamplingWith... Generating docs for compound ralab::base::resample::PPMCompFunctor... Generating docs for compound ralab::base::resample::DaCompFunctor... Generating docs for compound ralab::base::resample::FTMSCompFunctor... Generating docs for namespace ralab::base::resample::utilities Generating docs for compound ralab::base::resample::utilities::meanfunctor... Generating docs for namespace ralab::base::stats Generating docs for compound ralab::base::stats::NthPower... Generating docs for namespace ralab::base::utils Generating docs for namespace ralab::constants Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... lookup cache used 33731/65536 hits=341712 misses=37780 finished... rm -f doc/dox/html/jquery.js touch build-indep-stamp fakeroot debian/rules binary "---------------------------------------" DEB_HOST_GNU_TYPE: x86_64-linux-gnu DEB_BUILD_GNU_TYPE x86_64-linux-gnu DEB_BUILD_OPTIONS: noautodbgsym parallel=4 DEB_HOST_MULTIARCH: x86_64-linux-gnu "---------------------------------------" entering the configure target dh_testdir dh_prep -a rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3.substvars debian/libpwiz-tools.substvars rm -fr -- debian/.debhelper/generated/libpwiz-dev/ debian/libpwiz-dev/ debian/tmp/ debian/.debhelper/generated/libpwiz3/ debian/libpwiz3/ debian/.debhelper/generated/libpwiz-tools/ debian/libpwiz-tools/ mkdir -p /<>/debian/build cp -rpf autotools libraries pwiz pwiz_tools /<>/debian/build echo "BOOST_LDPATH = /usr/lib/x86_64-linux-gnu" > /<>/debian/build/autotools/Makefile.am-tmp cat /<>/debian/build/autotools/Makefile.am >> /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/usr/include/eigen3/Eigen"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/Eigen"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/libsvm-3.0"|' /<>/debian/build/autotools/Makefile.am-tmp mv /<>/debian/build/autotools/Makefile.am-tmp /<>/debian/build/autotools/Makefile.am rm -f /<>/debian/build/libraries/boost_aux/boost/interprocess/detail/* cd /<>/debian/build/autotools && autoreconf --force -i && cd .. && \ autotools/configure --prefix=/usr --build=x86_64-linux-gnu --host=x86_64-linux-gnu libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in '.'. libtoolize: copying file './libtool.m4' libtoolize: copying file './ltoptions.m4' libtoolize: copying file './ltsugar.m4' libtoolize: copying file './ltversion.m4' libtoolize: copying file './lt~obsolete.m4' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. configure.ac:11: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:11: You should run autoupdate. libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:11: the top level configure.ac:42: warning: The macro `BOOST_THREADS' is obsolete. configure.ac:42: You should run autoupdate. boost.m4:1306: BOOST_THREADS is expanded from... configure.ac:42: the top level configure.ac:11: installing './compile' configure.ac:6: installing './missing' Makefile.am: installing './depcomp' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to enable C11 features... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of x86_64-linux-gnu-gcc... gcc3 checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by x86_64-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-linux-gnu-nm -B checking the name lister (/usr/bin/x86_64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-linux-gnu-file... no checking for file... file checking for x86_64-linux-gnu-objdump... x86_64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-linux-gnu-ar... x86_64-linux-gnu-ar checking for archiver @FILE support... @ checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip checking for x86_64-linux-gnu-ranlib... x86_64-linux-gnu-ranlib checking command to parse /usr/bin/x86_64-linux-gnu-nm -B output from x86_64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-gcc static flag -static works... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) mawk checking for x86_64-linux-gnu-g++... x86_64-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking for x86_64-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of x86_64-linux-gnu-g++... gcc3 checking how to run the C++ preprocessor... x86_64-linux-gnu-g++ -E checking for ld used by x86_64-linux-gnu-g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-g++ static flag -static works... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for x86_64-linux-gnu-gcc... (cached) x86_64-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether x86_64-linux-gnu-gcc accepts -g... (cached) yes checking for x86_64-linux-gnu-gcc option to enable C11 features... (cached) none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of x86_64-linux-gnu-gcc... (cached) gcc3 checking for fcntl.h... yes checking for float.h... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for memory.h... yes checking for netinet/in.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/ioctl.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for int32_t... yes checking for int64_t... yes checking for off_t... yes checking for C/C++ restrict keyword... __restrict__ checking for size_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for ptrdiff_t... yes checking for error_at_line... yes checking for GNU libc compatible malloc... yes checking for alarm... yes checking for working mktime... yes checking for GNU libc compatible realloc... yes checking for atexit... yes checking for floor... no checking for memmove... yes checking for memset... yes checking for mkdir... yes checking for modf... yes checking for pow... no checking for sqrt... no checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for strtoul... yes checking for strtoull... yes checking for Boost headers version >= 1.43.0... yes checking for Boost's header version... 1_74 checking for the flags needed to use pthreads... conftest.cpp: In function 'int main()': conftest.cpp:62:22: warning: argument 1 null where non-null expected [-Wnonnull] 62 | pthread_attr_init(0); pthread_cleanup_push(0, 0); | ~~~~~~~~~~~~~~~~~^~~ In file included from conftest.cpp:57: /usr/include/pthread.h:285:12: note: in a call to function 'int pthread_attr_init(pthread_attr_t*)' declared 'nonnull' 285 | extern int pthread_attr_init (pthread_attr_t *__attr) __THROW __nonnull ((1)); | ^~~~~~~~~~~~~~~~~ conftest.cpp:63:19: warning: argument 1 null where non-null expected [-Wnonnull] 63 | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from conftest.cpp:57: /usr/include/pthread.h:202:12: note: in a call to function 'int pthread_create(pthread_t*, const pthread_attr_t*, void* (*)(void*), void*)' declared 'nonnull' 202 | extern int pthread_create (pthread_t *__restrict __newthread, | ^~~~~~~~~~~~~~ conftest.cpp:63:19: warning: argument 3 null where non-null expected [-Wnonnull] 63 | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from conftest.cpp:57: /usr/include/pthread.h:202:12: note: in a call to function 'int pthread_create(pthread_t*, const pthread_attr_t*, void* (*)(void*), void*)' declared 'nonnull' 202 | extern int pthread_create (pthread_t *__restrict __newthread, | ^~~~~~~~~~~~~~ -pthread checking for the toolset name used by Boost for x86_64-linux-gnu-g++... configure: WARNING: could not figure out which toolset name to use for x86_64-linux-gnu-g++ checking for boost/system/error_code.hpp... yes checking for the Boost system library... yes checking for boost/thread.hpp... yes checking for the Boost thread library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking for boost/filesystem/path.hpp... yes checking for the Boost filesystem library... (cached) yes checking for boost/regex.hpp... yes checking for the Boost regex library... (cached) yes checking for boost/archive/text_oarchive.hpp... yes checking for the Boost serialization library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking for boost/iostreams/device/file_descriptor.hpp... yes checking for the Boost iostreams library... (cached) yes checking for boost/date_time/posix_time/posix_time.hpp... yes checking for the Boost date_time library... (cached) yes checking for boost/program_options.hpp... yes checking for the Boost program_options library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking for boost/chrono.hpp... yes checking for the Boost chrono library... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands entering the configure-stamp target touch configure-stamp entering the build-arch-stamp target cd /<>/debian/build && \ VERBOSE=1 BOOST_LDPATH=/usr/lib/x86_64-linux-gnu /usr/bin/make && \ VERBOSE=1 DESTDIR=/<>/debian/build /usr/bin/make install make[1]: Entering directory '/<>/debian/build' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/debian/build' make[1]: Entering directory '/<>/debian/build' make[2]: Entering directory '/<>/debian/build' /usr/bin/mkdir -p '/<>/debian/build/usr/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c libpwiz.la '/<>/debian/build/usr/lib' libtool: install: /usr/bin/install -c .libs/libpwiz.so.3.0.0 /<>/debian/build/usr/lib/libpwiz.so.3.0.0 libtool: install: (cd /<>/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so.3 || { rm -f libpwiz.so.3 && ln -s libpwiz.so.3.0.0 libpwiz.so.3; }; }) libtool: install: (cd /<>/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so || { rm -f libpwiz.so && ln -s libpwiz.so.3.0.0 libpwiz.so; }; }) libtool: install: /usr/bin/install -c .libs/libpwiz.lai /<>/debian/build/usr/lib/libpwiz.la libtool: install: /usr/bin/install -c .libs/libpwiz.a /<>/debian/build/usr/lib/libpwiz.a libtool: install: chmod 644 /<>/debian/build/usr/lib/libpwiz.a libtool: install: x86_64-linux-gnu-ranlib /<>/debian/build/usr/lib/libpwiz.a libtool: warning: remember to run 'libtool --finish /usr/lib' /usr/bin/mkdir -p '/<>/debian/build/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c txt2mzml msconvert mscat hello_analyzer_2 idconvert write_example_files hello_msdata write_mzid_example_files hello_analyzer write_proteome_example_files pepcat write_traml_example_files '/<>/debian/build/usr/bin' libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/txt2mzml /<>/debian/build/usr/bin/txt2mzml libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/msconvert /<>/debian/build/usr/bin/msconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/mscat /<>/debian/build/usr/bin/mscat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer_2 /<>/debian/build/usr/bin/hello_analyzer_2 libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/idconvert /<>/debian/build/usr/bin/idconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_example_files /<>/debian/build/usr/bin/write_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_msdata /<>/debian/build/usr/bin/hello_msdata libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_mzid_example_files /<>/debian/build/usr/bin/write_mzid_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer /<>/debian/build/usr/bin/hello_analyzer libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_proteome_example_files /<>/debian/build/usr/bin/write_proteome_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/pepcat /<>/debian/build/usr/bin/pepcat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_traml_example_files /<>/debian/build/usr/bin/write_traml_example_files make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/<>/debian/build' make[1]: Leaving directory '/<>/debian/build' Removing the RPATH datum from the binaries. sh debian/remove-rpath-from-binaries.sh /<> sh debian/make-included-headers-hierarchy.sh debian/build/pwiz_tools/common/FullReaderList.hpp debian/build/pwiz_tools/common/MSDataAnalyzerApplication.hpp debian/build/libraries/libsvm-3.0/svm.h debian/build/libraries/boost_aux/boost/enum.hpp debian/build/libraries/boost_aux/boost/enum/iterator.hpp debian/build/libraries/boost_aux/boost/enum/macros.hpp debian/build/libraries/boost_aux/boost/enum/base.hpp debian/build/libraries/boost_aux/boost/enum/bitfield.hpp debian/build/libraries/boost_aux/boost/foreach_field.hpp debian/build/libraries/boost_aux/boost/utility/mutexed_singleton.hpp debian/build/libraries/boost_aux/boost/utility/thread_specific_singleton.hpp debian/build/libraries/boost_aux/boost/utility/singleton.hpp debian/build/libraries/boost_aux/boost/utility/detail/restricted.hpp debian/build/libraries/boost_aux/boost/utility/detail/singleton_manager.hpp debian/build/libraries/boost_aux/boost/utility/detail/member_dereference.hpp debian/build/libraries/boost_aux/boost/iostreams/arbitrary_positional_facade.hpp debian/build/libraries/boost_aux/boost/iostreams/filter/base64.hpp debian/build/libraries/boost_aux/boost/nowide/windows.hpp debian/build/libraries/boost_aux/boost/nowide/config.hpp debian/build/libraries/boost_aux/boost/nowide/iostream.hpp debian/build/libraries/boost_aux/boost/nowide/convert.hpp debian/build/libraries/boost_aux/boost/nowide/cstdio.hpp debian/build/libraries/boost_aux/boost/nowide/stackstring.hpp debian/build/libraries/boost_aux/boost/nowide/cenv.hpp debian/build/libraries/boost_aux/boost/nowide/fstream.hpp debian/build/libraries/boost_aux/boost/nowide/system.hpp debian/build/libraries/boost_aux/boost/nowide/cstdlib.hpp debian/build/libraries/boost_aux/boost/nowide/args.hpp debian/build/libraries/boost_aux/boost/nowide/filebuf.hpp debian/build/libraries/boost_aux/tools/bcp/bcp.hpp debian/build/libraries/boost_aux/tools/bcp/licence_info.hpp debian/build/libraries/boost_aux/tools/bcp/fileview.hpp debian/build/libraries/boost_aux/tools/bcp/bcp_imp.hpp debian/build/libraries/doctest.h debian/build/libraries/CSpline/CSpline.h debian/build/libraries/Eigen/nnls.h debian/build/pwiz/data/common/diff_std.hpp debian/build/pwiz/data/common/MemoryIndex.hpp debian/build/pwiz/data/common/Index.hpp debian/build/pwiz/data/common/Unimod.hpp debian/build/pwiz/data/common/BinaryIndexStream.hpp debian/build/pwiz/data/common/obo.hpp debian/build/pwiz/data/common/CVTranslator.hpp debian/build/pwiz/data/common/ParamTypes.hpp debian/build/pwiz/data/common/cv.hpp debian/build/pwiz/data/tradata/TraDataFile.hpp debian/build/pwiz/data/tradata/examples.hpp debian/build/pwiz/data/tradata/Reader.hpp debian/build/pwiz/data/tradata/TraData.hpp debian/build/pwiz/data/tradata/IO.hpp debian/build/pwiz/data/tradata/References.hpp debian/build/pwiz/data/tradata/Diff.hpp debian/build/pwiz/data/tradata/Serializer_traML.hpp debian/build/pwiz/data/tradata/TextWriter.hpp debian/build/pwiz/data/tradata/DefaultReaderList.hpp debian/build/pwiz/data/tradata/Version.hpp debian/build/pwiz/data/proteome/examples.hpp debian/build/pwiz/data/proteome/ProteinListWrapper.hpp debian/build/pwiz/data/proteome/Reader.hpp debian/build/pwiz/data/proteome/Serializer_FASTA.hpp debian/build/pwiz/data/proteome/AminoAcid.hpp debian/build/pwiz/data/proteome/ProteomeData.hpp debian/build/pwiz/data/proteome/Digestion.hpp debian/build/pwiz/data/proteome/ProteinListCache.hpp debian/build/pwiz/data/proteome/ProteomeDataFile.hpp debian/build/pwiz/data/proteome/Peptide.hpp debian/build/pwiz/data/proteome/Modification.hpp debian/build/pwiz/data/proteome/Reader_FASTA.hpp debian/build/pwiz/data/proteome/Diff.hpp debian/build/pwiz/data/proteome/TextWriter.hpp debian/build/pwiz/data/proteome/DefaultReaderList.hpp debian/build/pwiz/data/proteome/Version.hpp debian/build/pwiz/data/identdata/examples.hpp debian/build/pwiz/data/identdata/Reader.hpp debian/build/pwiz/data/identdata/KwCVMap.hpp debian/build/pwiz/data/identdata/IdentDataFile.hpp debian/build/pwiz/data/identdata/Serializer_pepXML.hpp debian/build/pwiz/data/identdata/Serializer_Text.hpp debian/build/pwiz/data/identdata/IdentData.hpp debian/build/pwiz/data/identdata/DelimWriter.hpp debian/build/pwiz/data/identdata/MzidPredicates.hpp debian/build/pwiz/data/identdata/Serializer_protXML.hpp debian/build/pwiz/data/identdata/IO.hpp debian/build/pwiz/data/identdata/References.hpp debian/build/pwiz/data/identdata/Diff.hpp debian/build/pwiz/data/identdata/MascotReader.hpp debian/build/pwiz/data/identdata/Serializer_mzid.hpp debian/build/pwiz/data/identdata/Pep2MzIdent.hpp debian/build/pwiz/data/identdata/TextWriter.hpp debian/build/pwiz/data/identdata/DefaultReaderList.hpp debian/build/pwiz/data/identdata/DelimReader.hpp debian/build/pwiz/data/identdata/Version.hpp debian/build/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp debian/build/pwiz/data/vendor_readers/ExtendedReaderList.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp debian/build/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp debian/build/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp debian/build/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp debian/build/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp debian/build/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp debian/build/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp debian/build/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp debian/build/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp debian/build/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp debian/build/pwiz/data/msdata/MSNumpress.hpp debian/build/pwiz/data/msdata/examples.hpp debian/build/pwiz/data/msdata/MSData.hpp debian/build/pwiz/data/msdata/Serializer_MGF.hpp debian/build/pwiz/data/msdata/SpectrumList_BTDX.hpp debian/build/pwiz/data/msdata/Index_mzML.hpp debian/build/pwiz/data/msdata/Reader.hpp debian/build/pwiz/data/msdata/ChromatogramListBase.hpp debian/build/pwiz/data/msdata/SpectrumListWrapper.hpp debian/build/pwiz/data/msdata/Serializer_mzXML.hpp debian/build/pwiz/data/msdata/SpectrumList_mzML.hpp debian/build/pwiz/data/msdata/SpectrumListBase.hpp debian/build/pwiz/data/msdata/LegacyAdapter.hpp debian/build/pwiz/data/msdata/SpectrumIterator.hpp debian/build/pwiz/data/msdata/Serializer_MSn.hpp debian/build/pwiz/data/msdata/IO.hpp debian/build/pwiz/data/msdata/BinaryDataEncoder.hpp debian/build/pwiz/data/msdata/References.hpp debian/build/pwiz/data/msdata/SpectrumListCache.hpp debian/build/pwiz/data/msdata/ChromatogramList_mzML.hpp debian/build/pwiz/data/msdata/SHA1OutputObserver.hpp debian/build/pwiz/data/msdata/Diff.hpp debian/build/pwiz/data/msdata/MSDataFile.hpp debian/build/pwiz/data/msdata/MSDataMerger.hpp debian/build/pwiz/data/msdata/SpectrumWorkerThreads.hpp debian/build/pwiz/data/msdata/SpectrumList_MSn.hpp debian/build/pwiz/data/msdata/MemoryMRUCache.hpp debian/build/pwiz/data/msdata/SpectrumList_MGF.hpp debian/build/pwiz/data/msdata/TextWriter.hpp debian/build/pwiz/data/msdata/SpectrumList_mzXML.hpp debian/build/pwiz/data/msdata/DefaultReaderList.hpp debian/build/pwiz/data/msdata/Serializer_mzML.hpp debian/build/pwiz/data/msdata/SpectrumInfo.hpp debian/build/pwiz/data/msdata/Version.hpp debian/build/pwiz/data/misc/FrequencyDataTestData.hpp debian/build/pwiz/data/misc/SampleDatum.hpp debian/build/pwiz/data/misc/MinimumPepXML.hpp debian/build/pwiz/data/misc/CalibrationParameters.hpp debian/build/pwiz/data/misc/PeakData.hpp debian/build/pwiz/data/misc/FrequencyData.hpp debian/build/pwiz/utility/math/Stats.hpp debian/build/pwiz/utility/math/LinearSolver.hpp debian/build/pwiz/utility/math/qr.hpp debian/build/pwiz/utility/math/OrderedPair.hpp debian/build/pwiz/utility/math/LinearLeastSquares.hpp debian/build/pwiz/utility/math/round.hpp debian/build/pwiz/utility/math/MatchedFilter.hpp debian/build/pwiz/utility/math/erf.hpp debian/build/pwiz/utility/math/HouseholderQR.hpp debian/build/pwiz/utility/math/Parabola.hpp debian/build/pwiz/utility/math/MatrixInverse.hpp debian/build/pwiz/utility/math/Types.hpp debian/build/pwiz/utility/findmf/base/ms/simplepicker.hpp debian/build/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/gauss.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp debian/build/pwiz/utility/findmf/base/filter/gaussfilter.hpp debian/build/pwiz/utility/findmf/base/filter/filter.hpp debian/build/pwiz/utility/findmf/base/base/cumsum.hpp debian/build/pwiz/utility/findmf/base/base/scale.hpp debian/build/pwiz/utility/findmf/base/base/interpolate.hpp debian/build/pwiz/utility/findmf/base/base/constants.hpp debian/build/pwiz/utility/findmf/base/base/utilities/interpolation.hpp debian/build/pwiz/utility/findmf/base/base/utilities/base.hpp debian/build/pwiz/utility/findmf/base/base/base.hpp debian/build/pwiz/utility/findmf/base/base/diff.hpp debian/build/pwiz/utility/findmf/base/base/copyif.hpp debian/build/pwiz/utility/findmf/base/resample/bucket1d.hpp debian/build/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/convert2dense.hpp debian/build/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp debian/build/pwiz/utility/findmf/base/resample/breakspec.hpp debian/build/pwiz/utility/findmf/base/resample/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/bin1d.hpp debian/build/pwiz/utility/proteome/IPIFASTADatabase.hpp debian/build/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp debian/build/pwiz/utility/chemistry/IsotopeTable.hpp debian/build/pwiz/utility/chemistry/Chemistry.hpp debian/build/pwiz/utility/chemistry/MZTolerance.hpp debian/build/pwiz/utility/chemistry/IsotopeCalculator.hpp debian/build/pwiz/utility/chemistry/Ion.hpp debian/build/pwiz/utility/chemistry/ChemistryData.hpp debian/build/pwiz/utility/minimxml/SAXParser.hpp debian/build/pwiz/utility/minimxml/XMLWriter.hpp debian/build/pwiz/utility/misc/VendorReaderTestHarness.hpp debian/build/pwiz/utility/misc/MSIHandler.hpp debian/build/pwiz/utility/misc/String.hpp debian/build/pwiz/utility/misc/Base64.hpp debian/build/pwiz/utility/misc/Stream.hpp debian/build/pwiz/utility/misc/Export.hpp debian/build/pwiz/utility/misc/Container.hpp debian/build/pwiz/utility/misc/BinaryData.hpp debian/build/pwiz/utility/misc/virtual_map.hpp debian/build/pwiz/utility/misc/Environment.hpp debian/build/pwiz/utility/misc/DateTime.hpp debian/build/pwiz/utility/misc/ClickwrapPrompter.hpp debian/build/pwiz/utility/misc/Exception.hpp debian/build/pwiz/utility/misc/endian.hpp debian/build/pwiz/utility/misc/Singleton.hpp debian/build/pwiz/utility/misc/almost_equal.hpp debian/build/pwiz/utility/misc/SHA1.h debian/build/pwiz/utility/misc/IterationListener.hpp debian/build/pwiz/utility/misc/CharIndexedVector.hpp debian/build/pwiz/utility/misc/IntegerSet.hpp debian/build/pwiz/utility/misc/Once.hpp debian/build/pwiz/utility/misc/SHA1_ostream.hpp debian/build/pwiz/utility/misc/Std.hpp debian/build/pwiz/utility/misc/Image.hpp debian/build/pwiz/utility/misc/shared_map.hpp debian/build/pwiz/utility/misc/mru_list.hpp debian/build/pwiz/utility/misc/optimized_lexical_cast.hpp debian/build/pwiz/utility/misc/random_access_compressed_ifstream.hpp debian/build/pwiz/utility/misc/unit.hpp debian/build/pwiz/utility/misc/Timer.hpp debian/build/pwiz/utility/misc/SHA1Calculator.hpp debian/build/pwiz/utility/misc/cpp_cli_utilities.hpp debian/build/pwiz/utility/misc/pinned_gcroot.h debian/build/pwiz/utility/misc/TabReader.hpp debian/build/pwiz/utility/misc/Filesystem.hpp debian/build/pwiz/analysis/common/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/common/DataFilter.hpp debian/build/pwiz/analysis/common/PeakDetector.hpp debian/build/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp debian/build/pwiz/analysis/common/CwtPeakDetector.hpp debian/build/pwiz/analysis/common/WhittakerSmoother.hpp debian/build/pwiz/analysis/common/Smoother.hpp debian/build/pwiz/analysis/common/LocalMaximumPeakDetector.hpp debian/build/pwiz/analysis/common/ZeroSampleFiller.hpp debian/build/pwiz/analysis/peptideid/PeptideID_pepXML.hpp debian/build/pwiz/analysis/peptideid/PeptideID.hpp debian/build/pwiz/analysis/peptideid/PeptideID_flat.hpp debian/build/pwiz/analysis/peptideid/PeptideIDMap.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp debian/build/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp debian/build/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp debian/build/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp debian/build/pwiz/analysis/demux/IInterpolation.hpp debian/build/pwiz/analysis/demux/DemuxDebugReader.hpp debian/build/pwiz/analysis/demux/OverlapDemultiplexer.hpp debian/build/pwiz/analysis/demux/DemuxHelpers.hpp debian/build/pwiz/analysis/demux/EnumConstantNotPresentException.hpp debian/build/pwiz/analysis/demux/PrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/CubicHermiteSpline.hpp debian/build/pwiz/analysis/demux/IPrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/DemuxSolver.hpp debian/build/pwiz/analysis/demux/IDemultiplexer.hpp debian/build/pwiz/analysis/demux/MSXDemultiplexer.hpp debian/build/pwiz/analysis/demux/DemuxDebugWriter.hpp debian/build/pwiz/analysis/demux/SpectrumPeakExtractor.hpp debian/build/pwiz/analysis/demux/DemuxTypes.hpp debian/build/pwiz/analysis/demux/MatrixIO.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp debian/build/pwiz/analysis/peakdetect/FeatureModeler.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetector.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp debian/build/pwiz/analysis/peakdetect/PeakFinder.hpp debian/build/pwiz/analysis/peakdetect/MZRTField.hpp debian/build/pwiz/analysis/peakdetect/PeakExtractor.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp debian/build/pwiz/analysis/peakdetect/Noise.hpp debian/build/pwiz/analysis/peakdetect/PeakelGrower.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp debian/build/pwiz/analysis/peakdetect/PeakFitter.hpp debian/build/pwiz/analysis/peakdetect/PeakelPicker.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp debian/build/pwiz/analysis/proteome_processing/ProteinListFactory.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp debian/build/pwiz/analysis/passive/RegionTIC.hpp debian/build/pwiz/analysis/passive/MSDataCache.hpp debian/build/pwiz/analysis/passive/MetadataReporter.hpp debian/build/pwiz/analysis/passive/MSDataAnalyzer.hpp debian/build/pwiz/analysis/passive/RegionSlice.hpp debian/build/pwiz/analysis/passive/RunSummary.hpp debian/build/pwiz/analysis/passive/RegionSIC.hpp debian/build/pwiz/analysis/passive/TabularConfig.hpp debian/build/pwiz/analysis/passive/PepXMLCat.hpp debian/build/pwiz/analysis/passive/RegionAnalyzer.hpp debian/build/pwiz/analysis/passive/SpectrumBinaryData.hpp debian/build/pwiz/analysis/passive/SpectrumTable.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp debian/build/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzian.hpp debian/build/pwiz/analysis/frequency/PeakDetector.hpp debian/build/pwiz/analysis/frequency/PeakDetectorNaive.hpp debian/build/pwiz/analysis/frequency/ParameterEstimator.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzian.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimator.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp debian/build/pwiz/analysis/frequency/ParametrizedFunction.hpp debian/build/pwiz/analysis/frequency/DerivativeTest.hpp debian/build/pwiz/analysis/Version.hpp debian/build/pwiz/Version.hpp doc/dox/mainpage.hpp .pc/gcc-boost-fail-cast-tribool-to-bool-force-it.patch/pwiz/data/identdata/TextWriter.hpp docbook-to-man debian/msconvert.sgml > debian/msconvert.1 docbook-to-man debian/idconvert.sgml > debian/idconvert.1 docbook-to-man debian/mscat.sgml > debian/mscat.1 docbook-to-man debian/txt2mzml.sgml > debian/txt2mzml.1 touch build-arch-stamp dh_testdir -a dh_testroot -a dh_link install -d debian/libpwiz-dev/usr/lib rm -f debian/libpwiz-dev/usr/lib/libpwiz.so ln -s libpwiz.so.3.0.0 debian/libpwiz-dev/usr/lib/libpwiz.so install -d debian/libpwiz3/usr/lib rm -f debian/libpwiz3/usr/lib/libpwiz.so.3 ln -s libpwiz.so.3.0.0 debian/libpwiz3/usr/lib/libpwiz.so.3 dh_installchangelogs -a install -d debian/libpwiz-dev/usr/share/doc/libpwiz-dev install -p -m0644 debian/changelog debian/libpwiz-dev/usr/share/doc/libpwiz-dev/changelog.Debian install -d debian/libpwiz3/usr/share/doc/libpwiz3 install -p -m0644 debian/changelog debian/libpwiz3/usr/share/doc/libpwiz3/changelog.Debian install -d debian/libpwiz-tools/usr/share/doc/libpwiz-tools install -p -m0644 debian/changelog debian/libpwiz-tools/usr/share/doc/libpwiz-tools/changelog.Debian dh_installdocs -a install -d debian/.debhelper/generated/libpwiz-dev install -p -m0644 debian/README.Debian debian/libpwiz-dev/usr/share/doc/libpwiz-dev/README.Debian install -p -m0644 debian/copyright debian/libpwiz-dev/usr/share/doc/libpwiz-dev/copyright install -d debian/.debhelper/generated/libpwiz3 install -p -m0644 debian/copyright debian/libpwiz3/usr/share/doc/libpwiz3/copyright install -d debian/.debhelper/generated/libpwiz-tools install -p -m0644 debian/copyright debian/libpwiz-tools/usr/share/doc/libpwiz-tools/copyright install -d debian/.debhelper/generated/libpwiz-doc dh_install -a install -d debian/libpwiz-dev/usr/include/ cp --reflink=auto -a ./debian/includes/proteowizard debian/libpwiz-dev/usr/include// cp --reflink=auto -a ./debian/build/usr/lib/libpwiz.a debian/libpwiz-dev/usr/lib/ cp --reflink=auto -a ./debian/build/usr/lib/libpwiz.so.3.0.0 debian/libpwiz3/usr/lib/ install -d debian/libpwiz3/usr/share/doc/libpwiz3/example-files cp --reflink=auto -a ./pwiz_tools/examples/hello_analyzer.cpp ./pwiz_tools/examples/hello_analyzer_2.cpp ./pwiz_tools/examples/hello_msdata.cpp ./pwiz_tools/examples/mscat.cpp ./pwiz_tools/examples/txt2mzml.cpp ./pwiz_tools/examples/write_example_files.cpp ./pwiz_tools/examples/write_mzid_example_files.cpp ./pwiz_tools/examples/write_proteome_example_files.cpp ./pwiz_tools/examples/write_traml_example_files.cpp debian/libpwiz3/usr/share/doc/libpwiz3/example-files/ install -d debian/libpwiz-tools/usr/bin cp --reflink=auto -a ./debian/build/usr/bin/idconvert ./debian/build/usr/bin/mscat ./debian/build/usr/bin/msconvert ./debian/build/usr/bin/txt2mzml debian/libpwiz-tools/usr/bin/ dh_installmenu -a dh_installman -a install -d debian/libpwiz3/usr/share/man/man3/ install -p -m0644 ./debian/libpwiz.3 debian/libpwiz3/usr/share/man/man3/libpwiz.3 install -d debian/libpwiz-tools/usr/share/man/man1/ install -p -m0644 ./debian/msconvert.1 debian/libpwiz-tools/usr/share/man/man1/msconvert.1 install -p -m0644 ./debian/idconvert.1 debian/libpwiz-tools/usr/share/man/man1/idconvert.1 install -p -m0644 ./debian/mscat.1 debian/libpwiz-tools/usr/share/man/man1/mscat.1 install -p -m0644 ./debian/txt2mzml.1 debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libpwiz3/usr/share/man/man3/libpwiz.3 debian/libpwiz-tools/usr/share/man/man1/idconvert.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libpwiz-tools/usr/share/man/man1/mscat.1 debian/libpwiz-tools/usr/share/man/man1/msconvert.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 mv debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1.dh-new debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 chmod 0644 -- debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 mv debian/libpwiz-tools/usr/share/man/man1/mscat.1.dh-new debian/libpwiz-tools/usr/share/man/man1/mscat.1 mv debian/libpwiz-tools/usr/share/man/man1/msconvert.1.dh-new debian/libpwiz-tools/usr/share/man/man1/msconvert.1 chmod 0644 -- debian/libpwiz-tools/usr/share/man/man1/mscat.1 debian/libpwiz-tools/usr/share/man/man1/msconvert.1 mv debian/libpwiz3/usr/share/man/man3/libpwiz.3.dh-new debian/libpwiz3/usr/share/man/man3/libpwiz.3 mv debian/libpwiz-tools/usr/share/man/man1/idconvert.1.dh-new debian/libpwiz-tools/usr/share/man/man1/idconvert.1 chmod 0644 -- debian/libpwiz3/usr/share/man/man3/libpwiz.3 debian/libpwiz-tools/usr/share/man/man1/idconvert.1 dh_strip -a debugedit --build-id --build-id-seed=libpwiz3/3.0.18342-4build1 debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 debugedit --build-id --build-id-seed=libpwiz-tools/3.0.18342-4build1 debian/libpwiz-tools/usr/bin/mscat f59f4653fa98c24828f3dd444c5bd31dd5f10e64 install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/f5 objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/mscat debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/f5/9f4653fa98c24828f3dd444c5bd31dd5f10e64.debug strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libpwiz-dev/usr/lib/libpwiz.a chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/f5/9f4653fa98c24828f3dd444c5bd31dd5f10e64.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/f5/9f4653fa98c24828f3dd444c5bd31dd5f10e64.debug strip --remove-section=.comment --remove-section=.note -o /tmp/fg0sg5F2A1/stripsAZL1x debian/libpwiz-tools/usr/bin/mscat chmod --reference debian/libpwiz-tools/usr/bin/mscat /tmp/fg0sg5F2A1/stripsAZL1x cat '/tmp/fg0sg5F2A1/stripsAZL1x' > 'debian/libpwiz-tools/usr/bin/mscat' chmod --reference /tmp/fg0sg5F2A1/stripsAZL1x debian/libpwiz-tools/usr/bin/mscat objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/f5/9f4653fa98c24828f3dd444c5bd31dd5f10e64.debug debian/libpwiz-tools/usr/bin/mscat /tmp/fg0sg5F2A1/objcopyqyY95t chmod --reference debian/libpwiz-tools/usr/bin/mscat /tmp/fg0sg5F2A1/objcopyqyY95t cat '/tmp/fg0sg5F2A1/objcopyqyY95t' > 'debian/libpwiz-tools/usr/bin/mscat' chmod --reference /tmp/fg0sg5F2A1/objcopyqyY95t debian/libpwiz-tools/usr/bin/mscat debugedit --build-id --build-id-seed=libpwiz-tools/3.0.18342-4build1 debian/libpwiz-tools/usr/bin/msconvert ced3895181129c10ca2442a2605ed5202ed94bdc install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/ce objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/msconvert debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/ce/d3895181129c10ca2442a2605ed5202ed94bdc.debug chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/ce/d3895181129c10ca2442a2605ed5202ed94bdc.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/ce/d3895181129c10ca2442a2605ed5202ed94bdc.debug strip --remove-section=.comment --remove-section=.note -o /tmp/fg0sg5F2A1/stripcQnt3w debian/libpwiz-tools/usr/bin/msconvert chmod --reference debian/libpwiz-tools/usr/bin/msconvert /tmp/fg0sg5F2A1/stripcQnt3w cat '/tmp/fg0sg5F2A1/stripcQnt3w' > 'debian/libpwiz-tools/usr/bin/msconvert' chmod --reference /tmp/fg0sg5F2A1/stripcQnt3w debian/libpwiz-tools/usr/bin/msconvert objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/ce/d3895181129c10ca2442a2605ed5202ed94bdc.debug debian/libpwiz-tools/usr/bin/msconvert /tmp/fg0sg5F2A1/objcopyNKWd_W chmod --reference debian/libpwiz-tools/usr/bin/msconvert /tmp/fg0sg5F2A1/objcopyNKWd_W cat '/tmp/fg0sg5F2A1/objcopyNKWd_W' > 'debian/libpwiz-tools/usr/bin/msconvert' chmod --reference /tmp/fg0sg5F2A1/objcopyNKWd_W debian/libpwiz-tools/usr/bin/msconvert debugedit --build-id --build-id-seed=libpwiz-tools/3.0.18342-4build1 debian/libpwiz-tools/usr/bin/idconvert 0c83b4bb7671ee4960e0725ce90fe576e917cf1c install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/0c objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/idconvert debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/0c/83b4bb7671ee4960e0725ce90fe576e917cf1c.debug chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/0c/83b4bb7671ee4960e0725ce90fe576e917cf1c.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/0c/83b4bb7671ee4960e0725ce90fe576e917cf1c.debug strip --remove-section=.comment --remove-section=.note -o /tmp/fg0sg5F2A1/stripMOAVup debian/libpwiz-tools/usr/bin/idconvert chmod --reference debian/libpwiz-tools/usr/bin/idconvert /tmp/fg0sg5F2A1/stripMOAVup cat '/tmp/fg0sg5F2A1/stripMOAVup' > 'debian/libpwiz-tools/usr/bin/idconvert' chmod --reference /tmp/fg0sg5F2A1/stripMOAVup debian/libpwiz-tools/usr/bin/idconvert objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/0c/83b4bb7671ee4960e0725ce90fe576e917cf1c.debug debian/libpwiz-tools/usr/bin/idconvert /tmp/fg0sg5F2A1/objcopyrKfINB chmod --reference debian/libpwiz-tools/usr/bin/idconvert /tmp/fg0sg5F2A1/objcopyrKfINB cat '/tmp/fg0sg5F2A1/objcopyrKfINB' > 'debian/libpwiz-tools/usr/bin/idconvert' chmod --reference /tmp/fg0sg5F2A1/objcopyrKfINB debian/libpwiz-tools/usr/bin/idconvert debugedit --build-id --build-id-seed=libpwiz-tools/3.0.18342-4build1 debian/libpwiz-tools/usr/bin/txt2mzml 51d03bd5b2c82207758d3d82a295eb0621b1dbc5 install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/51 objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/txt2mzml debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/51/d03bd5b2c82207758d3d82a295eb0621b1dbc5.debug chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/51/d03bd5b2c82207758d3d82a295eb0621b1dbc5.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/51/d03bd5b2c82207758d3d82a295eb0621b1dbc5.debug strip --remove-section=.comment --remove-section=.note -o /tmp/fg0sg5F2A1/stripuuuXbV debian/libpwiz-tools/usr/bin/txt2mzml chmod --reference debian/libpwiz-tools/usr/bin/txt2mzml /tmp/fg0sg5F2A1/stripuuuXbV cat '/tmp/fg0sg5F2A1/stripuuuXbV' > 'debian/libpwiz-tools/usr/bin/txt2mzml' chmod --reference /tmp/fg0sg5F2A1/stripuuuXbV debian/libpwiz-tools/usr/bin/txt2mzml objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/51/d03bd5b2c82207758d3d82a295eb0621b1dbc5.debug debian/libpwiz-tools/usr/bin/txt2mzml /tmp/fg0sg5F2A1/objcopyZPTDQh chmod --reference debian/libpwiz-tools/usr/bin/txt2mzml /tmp/fg0sg5F2A1/objcopyZPTDQh cat '/tmp/fg0sg5F2A1/objcopyZPTDQh' > 'debian/libpwiz-tools/usr/bin/txt2mzml' chmod --reference /tmp/fg0sg5F2A1/objcopyZPTDQh debian/libpwiz-tools/usr/bin/txt2mzml rm -fr debian/.debhelper/libpwiz-tools/dbgsym-root readelf -W --section-headers debian/libpwiz-dev/usr/lib/libpwiz.a | sed -n '/^ *\[[ 0-9]*]/s/ *\[[ 0-9]*\] *//p' | awk 'BEGIN {rv=1} /^NULL/ {next} $1 ~ /^.(text|data|(preinit|init|fini)_array$)/ {if ($5 !~ /^0+$/) rv=0} END { exit rv}' 513a5759a116610a65a438212d694eb80f9f29ce install -d debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/51 objcopy --only-keep-debug --compress-debug-sections debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/51/3a5759a116610a65a438212d694eb80f9f29ce.debug rm -fr debian/.debhelper/libpwiz-dev/dbgsym-root chmod 0644 -- debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/51/3a5759a116610a65a438212d694eb80f9f29ce.debug chown 0:0 -- debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/51/3a5759a116610a65a438212d694eb80f9f29ce.debug strip --remove-section=.comment --remove-section=.note -o /tmp/ggZdsxAtKK/strip8Ws8w4 debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 chmod --reference debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 /tmp/ggZdsxAtKK/strip8Ws8w4 cat '/tmp/ggZdsxAtKK/strip8Ws8w4' > 'debian/libpwiz3/usr/lib/libpwiz.so.3.0.0' chmod --reference /tmp/ggZdsxAtKK/strip8Ws8w4 debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 objcopy --add-gnu-debuglink debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/51/3a5759a116610a65a438212d694eb80f9f29ce.debug debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 /tmp/ggZdsxAtKK/objcopyuf4Zt5 chmod --reference debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 /tmp/ggZdsxAtKK/objcopyuf4Zt5 cat '/tmp/ggZdsxAtKK/objcopyuf4Zt5' > 'debian/libpwiz3/usr/lib/libpwiz.so.3.0.0' chmod --reference /tmp/ggZdsxAtKK/objcopyuf4Zt5 debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 rm -fr debian/.debhelper/libpwiz3/dbgsym-root dh_compress -av -Xexample-files cd debian/libpwiz-dev cd debian/libpwiz3 cd debian/libpwiz-tools chmod a-x usr/share/doc/libpwiz-dev/changelog.Debian gzip -9nf usr/share/doc/libpwiz-dev/changelog.Debian chmod a-x usr/share/doc/libpwiz-tools/changelog.Debian usr/share/man/man1/idconvert.1 usr/share/man/man1/mscat.1 usr/share/man/man1/msconvert.1 usr/share/man/man1/txt2mzml.1 cd '/<>' gzip -9nf usr/share/doc/libpwiz-tools/changelog.Debian usr/share/man/man1/idconvert.1 usr/share/man/man1/mscat.1 usr/share/man/man1/msconvert.1 usr/share/man/man1/txt2mzml.1 chmod a-x usr/share/doc/libpwiz3/changelog.Debian usr/share/man/man3/libpwiz.3 cd '/<>' gzip -9nf usr/share/doc/libpwiz3/changelog.Debian usr/share/man/man3/libpwiz.3 cd '/<>' dh_makeshlibs -a rm -f debian/libpwiz-dev/DEBIAN/shlibs rm -f debian/libpwiz3/DEBIAN/shlibs install -d debian/libpwiz3/DEBIAN echo "libpwiz 3 libpwiz3 (>= 3.0.18342)" >> debian/libpwiz3/DEBIAN/shlibs chmod 0644 -- debian/libpwiz3/DEBIAN/shlibs chown 0:0 -- debian/libpwiz3/DEBIAN/shlibs mv debian/.debhelper/generated/libpwiz3/triggers.new debian/.debhelper/generated/libpwiz3/triggers rm -f debian/libpwiz-tools/DEBIAN/shlibs dh_installdeb -a install -d debian/libpwiz-dev/DEBIAN install -p -m0644 debian/.debhelper/generated/libpwiz3/triggers debian/libpwiz3/DEBIAN/triggers install -d debian/libpwiz-tools/DEBIAN dpkg-gensymbols -P/<>/debian -plibpwiz3 \ -v3.0.0 -c2 -d \ -e/<>/debian/build/usr/lib/libpwiz.so.3.0.0 \ -O/<>/debian/libpwiz3/DEBIAN/symbols dpkg-gensymbols: debug: Scanning /<>/debian/build/usr/lib/libpwiz.so.3.0.0 for symbol information dpkg-gensymbols: warning: new libraries appeared in the symbols file: libpwiz.so.3 dpkg-gensymbols: warning: no debian/symbols file used as basis for generating /<>/debian/libpwiz3/DEBIAN/symbols dpkg-gensymbols: debug: Merging symbols from /<>/debian/build/usr/lib/libpwiz.so.3.0.0 as libpwiz.so.3 dpkg-gensymbols: debug: Storing symbols in /<>/debian/libpwiz3/DEBIAN/symbols. --- new_symbol_file (libpwiz3_3.0.0_amd64) +++ dpkg-gensymbolshp4bwv 2022-06-23 01:23:11.233147525 +0000 @@ -0,0 +1,5081 @@ +libpwiz.so.3 libpwiz3 #MINVER# + PERSON_DOC_OWNER@Base 3.0.0 + _Z10getKLscore12isotopeChainRKSt6vectorIdSaIdEES4_@Base 3.0.0 + _Z11pairCompare8pairDatad@Base 3.0.0 + _Z12pairSortFunc8pairDataS_@Base 3.0.0 + _Z12setLogStreamRSo@Base 3.0.0 + _Z12sortFinalCol9ridgeLineS_@Base 3.0.0 + _Z14convertColToMZRKSt6vectorIdSaIdEEi@Base 3.0.0 + _Z14getColLowBoundRKSt6vectorIdSaIdEEd@Base 3.0.0 + _Z14sortScoresByMZ10scoreChainS_@Base 3.0.0 + _Z15getColHighBoundRKSt6vectorIdSaIdEEd@Base 3.0.0 + _Z15rtimeComparatord8rtimeMap@Base 3.0.0 + _Z16etdPredictChargedRKSt3setIN4pwiz2cv4CVIDESt4lessIS2_ESaIS2_EERKSt6vectorINS0_6msdata15MZIntensityPairESaISB_EERS9_IiSaIiEEd@Base 3.0.0 + _Z17scoreAtPercentiledRKSt6vectorIdSaIdEEi@Base 3.0.0 + _Z19sortByRetentionTime8rtimeMapS_@Base 3.0.0 + _Z19sortScoresByKLScore10scoreChainS_@Base 3.0.0 + _Z22sortScoresBySumOfRanks10scoreChainS_@Base 3.0.0 + _Z24sortScoresByIntensitySum10scoreChainS_@Base 3.0.0 + _Z25sortScoresByOverallPvalue10scoreChainS_@Base 3.0.0 + _Z8nChoosekii@Base 3.0.0 + _Z8ricker2dRKSt6vectorIdSaIdEEiiidddRS1_@Base 3.0.0 + _ZGVN5boost12interprocess13mapped_region16page_size_holderILi0EE8PageSizeE@Base 3.0.0 + _ZGVN5boost13serialization9singletonINS0_25extended_type_info_typeidI13svm_parameterEEE10m_instanceE@Base 3.0.0 + _ZGVN5boost13serialization9singletonINS0_25extended_type_info_typeidI8svm_nodeEEE10m_instanceE@Base 3.0.0 + 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_ZGVZN5boost6system6detail15to_std_categoryERKNS0_14error_categoryEE15system_instance@Base 3.0.0 + _ZGVZN5boost6system6detail15to_std_categoryERKNS0_14error_categoryEE16generic_instance@Base 3.0.0 + _ZGVZN5boost6system6detail15to_std_categoryERKNS0_14error_categoryEE4map_@Base 3.0.0 + _ZGVZN5boost9xpressive6detail21get_invalid_xpressionIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEERKNS1_16shared_matchableIT_EEvE11invalid_ptrB5cxx11@Base 3.0.0 + _ZGVZN5boost9xpressive6detail21get_invalid_xpressionIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEERKNS1_16shared_matchableIT_EEvE11invalid_xprB5cxx11@Base 3.0.0 + _ZGVZN5boost9xpressive6detail21get_invalid_xpressionIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEERKNS1_16shared_matchableIT_EEvE17invalid_matchableB5cxx11@Base 3.0.0 + 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_ZTSN4pwiz8analysis19SpectrumList_Filter9PredicateE@Base 3.0.0 + _ZTSN4pwiz8analysis19SpectrumList_FilterE@Base 3.0.0 + _ZTSN4pwiz8analysis19SpectrumList_Sorter9PredicateE@Base 3.0.0 + _ZTSN4pwiz8analysis19SpectrumList_SorterE@Base 3.0.0 + _ZTSN4pwiz8analysis20AdjustByMassToChargeE@Base 3.0.0 + _ZTSN4pwiz8analysis20OverlapDemultiplexerE@Base 3.0.0 + _ZTSN4pwiz8analysis20PeakFamilyDetectorFT15NoDataExceptionE@Base 3.0.0 + _ZTSN4pwiz8analysis20PeakFamilyDetectorFTE@Base 3.0.0 + _ZTSN4pwiz8analysis21FeatureDetectorPeakelE@Base 3.0.0 + _ZTSN4pwiz8analysis21FeatureDetectorSimpleE@Base 3.0.0 + _ZTSN4pwiz8analysis21IsolationWindowFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis21NoiseCalculator_2PassE@Base 3.0.0 + _ZTSN4pwiz8analysis21PrecursorRecalculatorE@Base 3.0.0 + _ZTSN4pwiz8analysis21SavitzkyGolaySmootherE@Base 3.0.0 + _ZTSN4pwiz8analysis21SpectrumList_MZWindowE@Base 3.0.0 + _ZTSN4pwiz8analysis21SpectrumList_SmootherE@Base 3.0.0 + _ZTSN4pwiz8analysis22BinnedAdjustmentObjectE@Base 3.0.0 + _ZTSN4pwiz8analysis22PeakelGrower_ProximityE@Base 3.0.0 + _ZTSN4pwiz8analysis22SpectrumList_MZRefinerE@Base 3.0.0 + _ZTSN4pwiz8analysis23ChromatogramListWrapperE@Base 3.0.0 + _ZTSN4pwiz8analysis23ChromatogramList_Filter9PredicateE@Base 3.0.0 + _ZTSN4pwiz8analysis23ChromatogramList_FilterE@Base 3.0.0 + _ZTSN4pwiz8analysis23FeatureModeler_GaussianE@Base 3.0.0 + _ZTSN4pwiz8analysis23MSDataAnalyzerContainerE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_PeakFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_PeakPickerE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_ScanSummerE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_TitleMakerE@Base 3.0.0 + _ZTSN4pwiz8analysis24LocalMaximumPeakDetectorE@Base 3.0.0 + _ZTSN4pwiz8analysis24SpectrumList_IonMobilityE@Base 3.0.0 + _ZTSN4pwiz8analysis26ProteinList_DecoyGenerator9PredicateE@Base 3.0.0 + _ZTSN4pwiz8analysis26ProteinList_DecoyGeneratorE@Base 3.0.0 + _ZTSN4pwiz8analysis26SpectrumList_MetadataFixerE@Base 3.0.0 + _ZTSN4pwiz8analysis28NoVendorPeakPickingExceptionE@Base 3.0.0 + _ZTSN4pwiz8analysis28PrecursorRecalculatorDefaultE@Base 3.0.0 + _ZTSN4pwiz8analysis28SpectrumList_LockmassRefinerE@Base 3.0.0 + _ZTSN4pwiz8analysis28SpectrumList_PrecursorRefineE@Base 3.0.0 + _ZTSN4pwiz8analysis29ChromatogramList_XICGeneratorE@Base 3.0.0 + _ZTSN4pwiz8analysis30SpectrumList_ChargeFromIsotopeE@Base 3.0.0 + _ZTSN4pwiz8analysis30SpectrumList_ZeroSamplesFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis32ChromatogramList_LockmassRefinerE@Base 3.0.0 + _ZTSN4pwiz8analysis33ProteinList_FilterPredicate_IdSetE@Base 3.0.0 + _ZTSN4pwiz8analysis34SpectrumList_ChargeStateCalculatorE@Base 3.0.0 + _ZTSN4pwiz8analysis34SpectrumList_FilterPredicate_IdSetE@Base 3.0.0 + _ZTSN4pwiz8analysis34SpectrumList_PrecursorRecalculatorE@Base 3.0.0 + _ZTSN4pwiz8analysis36ProteinList_FilterPredicate_IndexSetE@Base 3.0.0 + _ZTSN4pwiz8analysis37SpectrumList_FilterPredicate_IndexSetE@Base 3.0.0 + _ZTSN4pwiz8analysis37SpectrumList_FilterPredicate_PolarityE@Base 3.0.0 + _ZTSN4pwiz8analysis38ChromatogramList_SavitzkyGolaySmootherE@Base 3.0.0 + _ZTSN4pwiz8analysis38SpectrumList_FilterPredicate_MzPresentE@Base 3.0.0 + _ZTSN4pwiz8analysis39SpectrumList_FilterPredicate_MSLevelSetE@Base 3.0.0 + _ZTSN4pwiz8analysis41ChromatogramList_FilterPredicate_IndexSetE@Base 3.0.0 + _ZTSN4pwiz8analysis41SpectrumList_FilterPredicate_AnalyzerTypeE@Base 3.0.0 + _ZTSN4pwiz8analysis41SpectrumList_FilterPredicate_ScanEventSetE@Base 3.0.0 + _ZTSN4pwiz8analysis42SpectrumList_FilterPredicate_ScanNumberSetE@Base 3.0.0 + _ZTSN4pwiz8analysis42SpectrumList_FilterPredicate_ScanTimeRangeE@Base 3.0.0 + _ZTSN4pwiz8analysis42SpectrumList_SorterPredicate_ScanStartTimeE@Base 3.0.0 + _ZTSN4pwiz8analysis43SpectrumList_FilterPredicate_ActivationTypeE@Base 3.0.0 + _ZTSN4pwiz8analysis43SpectrumList_FilterPredicate_ChargeStateSetE@Base 3.0.0 + _ZTSN4pwiz8analysis43SpectrumList_FilterPredicate_PrecursorMzSetE@Base 3.0.0 + _ZTSN4pwiz8analysis44ProteinList_DecoyGeneratorPredicate_ReversedE@Base 3.0.0 + _ZTSN4pwiz8analysis44ProteinList_DecoyGeneratorPredicate_ShuffledE@Base 3.0.0 + _ZTSN4pwiz8analysis45SpectrumList_FilterPredicate_ThermoScanFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis50SpectrumList_FilterPredicate_DefaultArrayLengthSetE@Base 3.0.0 + _ZTSN4pwiz8analysis8SmootherE@Base 3.0.0 + _ZTSN4pwiz8analysis9RegionSICE@Base 3.0.0 + _ZTSN4pwiz8analysis9RegionTICE@Base 3.0.0 + _ZTSN4pwiz8minimxml17basic_charcounterIcEE@Base 3.0.0 + _ZTSN4pwiz8minimxml9SAXParser7HandlerE@Base 3.0.0 + _ZTSN4pwiz8minimxml9SAXParser9saxstringE@Base 3.0.0 + _ZTSN4pwiz8minimxml9XMLWriter14OutputObserverE@Base 3.0.0 + _ZTSN4pwiz8minimxml9XMLWriterE@Base 3.0.0 + _ZTSN4pwiz8proteome10ReaderFailE@Base 3.0.0 + _ZTSN4pwiz8proteome10ReaderListE@Base 3.0.0 + _ZTSN4pwiz8proteome11ProteinListE@Base 3.0.0 + _ZTSN4pwiz8proteome12ProteomeDataE@Base 3.0.0 + _ZTSN4pwiz8proteome12Reader_FASTAE@Base 3.0.0 + 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_ZZN5boost9xpressive6detail21get_invalid_xpressionIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEERKNS1_16shared_matchableIT_EEvE17invalid_matchableB5cxx11@Base 3.0.0 + _ZZNK5boost9xpressive6detail16sub_match_vectorIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEixEmE6s_null@Base 3.0.0 + _log@Base 3.0.0 + libsvm_version@Base 3.0.0 + os_@Base 3.0.0 + peakFamilyDetectorFTTestDataSize_@Base 3.0.0 + peakFamilyDetectorFTTestData_@Base 3.0.0 + sampleData_@Base 3.0.0 + sampleFrequencyData_@Base 3.0.0 + sampleMassDataSize_@Base 3.0.0 + sampleMassData_@Base 3.0.0 + svm_check_parameter@Base 3.0.0 + svm_check_probability_model@Base 3.0.0 + svm_cross_validation@Base 3.0.0 + svm_destroy_model@Base 3.0.0 + svm_destroy_param@Base 3.0.0 + svm_free_and_destroy_model@Base 3.0.0 + svm_free_model_content@Base 3.0.0 + svm_get_labels@Base 3.0.0 + svm_get_nr_class@Base 3.0.0 + svm_get_svm_type@Base 3.0.0 + svm_get_svr_probability@Base 3.0.0 + svm_load_model@Base 3.0.0 + svm_predict@Base 3.0.0 + svm_predict_probability@Base 3.0.0 + svm_predict_values@Base 3.0.0 + svm_save_model@Base 3.0.0 + svm_set_print_string_function@Base 3.0.0 + svm_train@Base 3.0.0 + testDataSize_@Base 3.0.0 + testData_@Base 3.0.0 echo "libpwiz 3 libpwiz3 (>= 3.0.9393-1)" > \ /<>/debian/libpwiz3/DEBIAN/shlibs dh_fixperms -a find debian/libpwiz-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz3 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz-tools -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz-tools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz3 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz-tools/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz-tools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz3/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz-tools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz-tools/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-tools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-tools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libpwiz3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libpwiz-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_lintian -a dh_shlibdeps -a dpkg-shlibdeps -Tdebian/libpwiz3.substvars debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 dpkg-shlibdeps -Tdebian/libpwiz-tools.substvars debian/libpwiz-tools/usr/bin/mscat debian/libpwiz-tools/usr/bin/msconvert debian/libpwiz-tools/usr/bin/idconvert debian/libpwiz-tools/usr/bin/txt2mzml dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dpkg-shlibdeps: warning: symbol compressBound used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol compress used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol uncompress used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateCopy used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateReset used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol crc32 used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflate used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dh_gencontrol -a echo misc:Depends= >> debian/libpwiz-dev.substvars echo misc:Pre-Depends= >> debian/libpwiz-dev.substvars dpkg-gencontrol -plibpwiz-dev -ldebian/changelog -Tdebian/libpwiz-dev.substvars -Pdebian/libpwiz-dev echo misc:Depends= >> debian/libpwiz3.substvars echo misc:Pre-Depends= >> debian/libpwiz3.substvars dpkg-gencontrol -plibpwiz3 -ldebian/changelog -Tdebian/libpwiz3.substvars -Pdebian/libpwiz3 echo misc:Depends= >> debian/libpwiz-tools.substvars echo misc:Pre-Depends= >> debian/libpwiz-tools.substvars dpkg-gencontrol -plibpwiz-tools -ldebian/changelog -Tdebian/libpwiz-tools.substvars -Pdebian/libpwiz-tools dpkg-gencontrol: warning: Depends field of package libpwiz-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libpwiz-tools/DEBIAN/control chown 0:0 -- debian/libpwiz-tools/DEBIAN/control chmod 0644 -- debian/libpwiz3/DEBIAN/control chown 0:0 -- debian/libpwiz3/DEBIAN/control chmod 0644 -- debian/libpwiz-dev/DEBIAN/control chown 0:0 -- debian/libpwiz-dev/DEBIAN/control dh_md5sums -a cd debian/libpwiz-tools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libpwiz3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libpwiz-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libpwiz-tools/DEBIAN/md5sums chown 0:0 -- debian/libpwiz-tools/DEBIAN/md5sums chmod 0644 -- debian/libpwiz3/DEBIAN/md5sums chown 0:0 -- debian/libpwiz3/DEBIAN/md5sums chmod 0644 -- debian/libpwiz-dev/DEBIAN/md5sums chown 0:0 -- debian/libpwiz-dev/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/libpwiz-dev .. dpkg-deb --build debian/libpwiz3 .. dpkg-deb --build debian/libpwiz-tools .. INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libpwiz-dev (in debian/libpwiz-dev); do_strip: , oemstrip: pkgstriptranslations: processing libpwiz-tools (in debian/libpwiz-tools); do_strip: , oemstrip: pkgstriptranslations: processing libpwiz3 (in debian/libpwiz3); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libpwiz-dev/DEBIAN/control, package libpwiz-dev, directory debian/libpwiz-dev pkgstripfiles: processing control file: debian/libpwiz3/DEBIAN/control, package libpwiz3, directory debian/libpwiz3 INFO: pkgstripfiles: waiting for lock (libpwiz3) ... Searching for duplicated docs in dependency libpwiz3... symlinking changelog.Debian.gz in libpwiz-dev to file in libpwiz3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libpwiz-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libpwiz-dev' in '../libpwiz-dev_3.0.18342-4build1_amd64.deb'. pkgstripfiles: Truncating usr/share/doc/libpwiz3/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libpwiz3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libpwiz3' in '../libpwiz3_3.0.18342-4build1_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libpwiz-tools/DEBIAN/control, package libpwiz-tools, directory debian/libpwiz-tools Searching for duplicated docs in dependency libpwiz3... symlinking changelog.Debian.gz in libpwiz-tools to file in libpwiz3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libpwiz-tools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libpwiz-tools' in '../libpwiz-tools_3.0.18342-4build1_amd64.deb'. entering the build-indep-stamp target cd doc/dox && doxygen warning: Tag 'USE_WINDOWS_ENCODING' at line 11 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DETAILS_AT_TOP' at line 33 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 70 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 119 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 130 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 177 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 178 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 210 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MAX_DOT_GRAPH_WIDTH' at line 231 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MAX_DOT_GRAPH_HEIGHT' at line 232 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! Doxygen version used: 1.9.1 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/pwiz Searching for files in directory /<>/pwiz/analysis Searching for files in directory /<>/pwiz/analysis/chromatogram_processing Searching for files in directory /<>/pwiz/analysis/common Searching for files in directory /<>/pwiz/analysis/demux Searching for files in directory /<>/pwiz/analysis/frequency Searching for files in directory /<>/pwiz/analysis/passive Searching for files in directory /<>/pwiz/analysis/peakdetect Searching for files in directory /<>/pwiz/analysis/peptideid Searching for files in directory /<>/pwiz/analysis/proteome_processing Searching for files in directory /<>/pwiz/analysis/spectrum_processing Searching for files in directory /<>/pwiz/data Searching for files in directory /<>/pwiz/data/common Searching for files in directory /<>/pwiz/data/identdata Searching for files in directory /<>/pwiz/data/misc Searching for files in directory /<>/pwiz/data/msdata Searching for files in directory /<>/pwiz/data/proteome Searching for files in directory /<>/pwiz/data/tradata Searching for files in directory /<>/pwiz/data/vendor_readers Searching for files in directory /<>/pwiz/data/vendor_readers/ABI Searching for files in directory /<>/pwiz/data/vendor_readers/ABI/T2D Searching for files in directory /<>/pwiz/data/vendor_readers/Agilent Searching for files in directory /<>/pwiz/data/vendor_readers/Bruker Searching for files in directory /<>/pwiz/data/vendor_readers/Shimadzu Searching for files in directory /<>/pwiz/data/vendor_readers/Thermo Searching for files in directory /<>/pwiz/data/vendor_readers/UIMF Searching for files in directory /<>/pwiz/data/vendor_readers/UNIFI Searching for files in directory /<>/pwiz/data/vendor_readers/Waters Searching for files in directory /<>/pwiz/utility Searching for files in directory /<>/pwiz/utility/chemistry Searching for files in directory /<>/pwiz/utility/findmf Searching for files in directory /<>/pwiz/utility/findmf/base Searching for files in directory /<>/pwiz/utility/findmf/base/base Searching for files in directory /<>/pwiz/utility/findmf/base/base/utilities Searching for files in directory /<>/pwiz/utility/findmf/base/filter Searching for files in directory /<>/pwiz/utility/findmf/base/filter/utilities Searching for files in directory /<>/pwiz/utility/findmf/base/ms Searching for files in directory /<>/pwiz/utility/findmf/base/resample Searching for files in directory /<>/pwiz/utility/findmf/base/resample/utilities Searching for files in directory /<>/pwiz/utility/math Searching for files in directory /<>/pwiz/utility/minimxml Searching for files in directory /<>/pwiz/utility/misc Searching for files in directory /<>/pwiz/utility/proteome Searching for files in directory /<>/doc/dox Reading and parsing tag files Parsing files Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_FilterTest.cpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_FilterTest.cpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefinerTest.cpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefinerTest.cpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramListFactoryTest.cpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListFactoryTest.cpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/ChromatogramListWrapperTest.cpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListWrapperTest.cpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp... Preprocessing /<>/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmootherTest.cpp... Parsing file /<>/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmootherTest.cpp... Preprocessing /<>/pwiz/analysis/common/CwtPeakDetector.hpp... Parsing file /<>/pwiz/analysis/common/CwtPeakDetector.hpp... Preprocessing /<>/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Parsing file /<>/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Preprocessing /<>/pwiz/analysis/common/DataFilter.hpp... Parsing file /<>/pwiz/analysis/common/DataFilter.hpp... Preprocessing /<>/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Parsing file /<>/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Preprocessing /<>/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Parsing file /<>/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Preprocessing /<>/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Parsing file /<>/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Preprocessing /<>/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Parsing file /<>/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Preprocessing /<>/pwiz/analysis/common/PeakDetector.hpp... Parsing file /<>/pwiz/analysis/common/PeakDetector.hpp... Preprocessing /<>/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Parsing file /<>/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Preprocessing /<>/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Parsing file /<>/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Preprocessing /<>/pwiz/analysis/common/Smoother.hpp... Parsing file /<>/pwiz/analysis/common/Smoother.hpp... Preprocessing /<>/pwiz/analysis/common/WhittakerSmoother.hpp... Parsing file /<>/pwiz/analysis/common/WhittakerSmoother.hpp... Preprocessing /<>/pwiz/analysis/common/WhittakerSmootherTest.cpp... Parsing file /<>/pwiz/analysis/common/WhittakerSmootherTest.cpp... Preprocessing /<>/pwiz/analysis/common/ZeroSampleFiller.hpp... Parsing file /<>/pwiz/analysis/common/ZeroSampleFiller.hpp... Preprocessing /<>/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Parsing file /<>/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Preprocessing /<>/pwiz/analysis/demux/CubicHermiteSpline.hpp... Parsing file /<>/pwiz/analysis/demux/CubicHermiteSpline.hpp... Preprocessing /<>/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Parsing file /<>/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxDebugReader.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxDebugReader.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp... Parsing file /<>/pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxDebugWriter.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxDebugWriter.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxHelpers.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxHelpers.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxHelpersTest.cpp... Parsing file /<>/pwiz/analysis/demux/DemuxHelpersTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxSolver.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxSolver.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxSolverTest.cpp... Parsing file /<>/pwiz/analysis/demux/DemuxSolverTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxTypes.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxTypes.hpp... Preprocessing /<>/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Parsing file /<>/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Preprocessing /<>/pwiz/analysis/demux/IDemultiplexer.hpp... Parsing file /<>/pwiz/analysis/demux/IDemultiplexer.hpp... Preprocessing /<>/pwiz/analysis/demux/IInterpolation.hpp... Parsing file /<>/pwiz/analysis/demux/IInterpolation.hpp... Preprocessing /<>/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Parsing file /<>/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Preprocessing /<>/pwiz/analysis/demux/MatrixIO.hpp... Parsing file /<>/pwiz/analysis/demux/MatrixIO.hpp... Preprocessing /<>/pwiz/analysis/demux/MatrixIOTest.cpp... Parsing file /<>/pwiz/analysis/demux/MatrixIOTest.cpp... Preprocessing /<>/pwiz/analysis/demux/MSXDemultiplexer.hpp... Parsing file /<>/pwiz/analysis/demux/MSXDemultiplexer.hpp... Preprocessing /<>/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Parsing file /<>/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Preprocessing /<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Parsing file /<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Preprocessing /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Parsing file /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Preprocessing /<>/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Parsing file /<>/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/DerivativeTest.hpp... Parsing file /<>/pwiz/analysis/frequency/DerivativeTest.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimator.hpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimator.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Parsing file /<>/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Preprocessing /<>/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Parsing file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Parsing file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Preprocessing /<>/pwiz/analysis/frequency/ParameterEstimator.hpp... Parsing file /<>/pwiz/analysis/frequency/ParameterEstimator.hpp... Preprocessing /<>/pwiz/analysis/frequency/ParametrizedFunction.hpp... Parsing file /<>/pwiz/analysis/frequency/ParametrizedFunction.hpp... Preprocessing /<>/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... Parsing file /<>/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetector.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetector.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorNaive.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorNaive.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianTest.cpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianTest.cpp... Preprocessing /<>/pwiz/analysis/passive/MetadataReporter.hpp... Parsing file /<>/pwiz/analysis/passive/MetadataReporter.hpp... Preprocessing /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp... Parsing file /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp... Preprocessing /<>/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Parsing file /<>/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Preprocessing /<>/pwiz/analysis/passive/MSDataCache.hpp... Parsing file /<>/pwiz/analysis/passive/MSDataCache.hpp... Preprocessing /<>/pwiz/analysis/passive/MSDataCacheTest.cpp... Parsing file /<>/pwiz/analysis/passive/MSDataCacheTest.cpp... Preprocessing /<>/pwiz/analysis/passive/PepXMLCat.hpp... Parsing file /<>/pwiz/analysis/passive/PepXMLCat.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionAnalyzer.hpp... Parsing file /<>/pwiz/analysis/passive/RegionAnalyzer.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionSIC.hpp... Parsing file /<>/pwiz/analysis/passive/RegionSIC.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionSlice.hpp... Parsing file /<>/pwiz/analysis/passive/RegionSlice.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionTIC.hpp... Parsing file /<>/pwiz/analysis/passive/RegionTIC.hpp... Preprocessing /<>/pwiz/analysis/passive/RunSummary.hpp... Parsing file /<>/pwiz/analysis/passive/RunSummary.hpp... Preprocessing /<>/pwiz/analysis/passive/SpectrumBinaryData.hpp... Parsing file /<>/pwiz/analysis/passive/SpectrumBinaryData.hpp... Preprocessing /<>/pwiz/analysis/passive/SpectrumTable.hpp... Parsing file /<>/pwiz/analysis/passive/SpectrumTable.hpp... Preprocessing /<>/pwiz/analysis/passive/TabularConfig.hpp... Parsing file /<>/pwiz/analysis/passive/TabularConfig.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Parsing file /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/Noise.hpp... Parsing file /<>/pwiz/analysis/peakdetect/Noise.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Preprocessing /<>/pwiz/analysis/Version.hpp... Parsing file /<>/pwiz/analysis/Version.hpp... Preprocessing /<>/pwiz/data/common/BinaryIndexStream.hpp... Parsing file /<>/pwiz/data/common/BinaryIndexStream.hpp... Preprocessing /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Parsing file /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Preprocessing /<>/pwiz/data/common/cv.hpp... Parsing file /<>/pwiz/data/common/cv.hpp... Preprocessing /<>/pwiz/data/common/cvtest.cpp... Parsing file /<>/pwiz/data/common/cvtest.cpp... Preprocessing /<>/pwiz/data/common/CVTranslator.hpp... Parsing file /<>/pwiz/data/common/CVTranslator.hpp... Preprocessing /<>/pwiz/data/common/CVTranslatorTest.cpp... Parsing file /<>/pwiz/data/common/CVTranslatorTest.cpp... Preprocessing /<>/pwiz/data/common/diff_std.hpp... Parsing file /<>/pwiz/data/common/diff_std.hpp... Preprocessing /<>/pwiz/data/common/diff_std_test.cpp... Parsing file /<>/pwiz/data/common/diff_std_test.cpp... Preprocessing /<>/pwiz/data/common/Index.hpp... Parsing file /<>/pwiz/data/common/Index.hpp... Preprocessing /<>/pwiz/data/common/MemoryIndex.hpp... Parsing file /<>/pwiz/data/common/MemoryIndex.hpp... Preprocessing /<>/pwiz/data/common/MemoryIndexTest.cpp... Parsing file /<>/pwiz/data/common/MemoryIndexTest.cpp... Preprocessing /<>/pwiz/data/common/obo.hpp... Parsing file /<>/pwiz/data/common/obo.hpp... Preprocessing /<>/pwiz/data/common/obotest.cpp... Parsing file /<>/pwiz/data/common/obotest.cpp... Preprocessing /<>/pwiz/data/common/ParamTypes.hpp... Parsing file /<>/pwiz/data/common/ParamTypes.hpp... Preprocessing /<>/pwiz/data/common/ParamTypesTest.cpp... Parsing file /<>/pwiz/data/common/ParamTypesTest.cpp... Preprocessing /<>/pwiz/data/common/Unimod.hpp... Parsing file /<>/pwiz/data/common/Unimod.hpp... Preprocessing /<>/pwiz/data/common/UnimodTest.cpp... Parsing file /<>/pwiz/data/common/UnimodTest.cpp... Preprocessing /<>/pwiz/data/identdata/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/identdata/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/identdata/DelimReader.hpp... Parsing file /<>/pwiz/data/identdata/DelimReader.hpp... Preprocessing /<>/pwiz/data/identdata/DelimWriter.hpp... Parsing file /<>/pwiz/data/identdata/DelimWriter.hpp... Preprocessing /<>/pwiz/data/identdata/Diff.hpp... Parsing file /<>/pwiz/data/identdata/Diff.hpp... Preprocessing /<>/pwiz/data/identdata/DiffTest.cpp... Parsing file /<>/pwiz/data/identdata/DiffTest.cpp... Preprocessing /<>/pwiz/data/identdata/examples.hpp... Parsing file /<>/pwiz/data/identdata/examples.hpp... Preprocessing /<>/pwiz/data/identdata/ExtendedReadTest.cpp... Parsing file /<>/pwiz/data/identdata/ExtendedReadTest.cpp... Preprocessing /<>/pwiz/data/identdata/IdentData.hpp... Parsing file /<>/pwiz/data/identdata/IdentData.hpp... Preprocessing /<>/pwiz/data/identdata/IdentDataFile.hpp... Parsing file /<>/pwiz/data/identdata/IdentDataFile.hpp... Preprocessing /<>/pwiz/data/identdata/IdentDataTest.cpp... Parsing file /<>/pwiz/data/identdata/IdentDataTest.cpp... Preprocessing /<>/pwiz/data/identdata/IO.hpp... Parsing file /<>/pwiz/data/identdata/IO.hpp... Preprocessing /<>/pwiz/data/identdata/IOTest.cpp... Parsing file /<>/pwiz/data/identdata/IOTest.cpp... Preprocessing /<>/pwiz/data/identdata/KwCVMap.hpp... Parsing file /<>/pwiz/data/identdata/KwCVMap.hpp... Preprocessing /<>/pwiz/data/identdata/KwCVMapTest.cpp... Parsing file /<>/pwiz/data/identdata/KwCVMapTest.cpp... Preprocessing /<>/pwiz/data/identdata/MascotReader.hpp... Parsing file /<>/pwiz/data/identdata/MascotReader.hpp... Preprocessing /<>/pwiz/data/identdata/MzidPredicates.hpp... Parsing file /<>/pwiz/data/identdata/MzidPredicates.hpp... Preprocessing /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Parsing file /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Preprocessing /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Parsing file /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Preprocessing /<>/pwiz/data/identdata/Reader.hpp... Parsing file /<>/pwiz/data/identdata/Reader.hpp... Preprocessing /<>/pwiz/data/identdata/ReaderTest.cpp... Parsing file /<>/pwiz/data/identdata/ReaderTest.cpp... Preprocessing /<>/pwiz/data/identdata/References.hpp... Parsing file /<>/pwiz/data/identdata/References.hpp... Preprocessing /<>/pwiz/data/identdata/ReferencesTest.cpp... Parsing file /<>/pwiz/data/identdata/ReferencesTest.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_mzid.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_mzid.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_mzid_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_mzid_Test.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_pepXML.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_pepXML.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_protXML.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_protXML.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_protXML_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_protXML_Test.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_Text.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_Text.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Preprocessing /<>/pwiz/data/identdata/TextWriter.hpp... Parsing file /<>/pwiz/data/identdata/TextWriter.hpp... Preprocessing /<>/pwiz/data/identdata/Version.hpp... Parsing file /<>/pwiz/data/identdata/Version.hpp... Preprocessing /<>/pwiz/data/misc/CalibrationParameters.hpp... Parsing file /<>/pwiz/data/misc/CalibrationParameters.hpp... Preprocessing /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Parsing file /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Preprocessing /<>/pwiz/data/misc/FrequencyData.hpp... Parsing file /<>/pwiz/data/misc/FrequencyData.hpp... Preprocessing /<>/pwiz/data/misc/FrequencyDataTest.cpp... Parsing file /<>/pwiz/data/misc/FrequencyDataTest.cpp... Preprocessing /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Parsing file /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Preprocessing /<>/pwiz/data/misc/MinimumPepXML.hpp... Parsing file /<>/pwiz/data/misc/MinimumPepXML.hpp... Preprocessing /<>/pwiz/data/misc/MinimumPepXMLTest.cpp... Parsing file /<>/pwiz/data/misc/MinimumPepXMLTest.cpp... Preprocessing /<>/pwiz/data/misc/PeakData.hpp... Parsing file /<>/pwiz/data/misc/PeakData.hpp... Preprocessing /<>/pwiz/data/misc/PeakDataTest.cpp... Parsing file /<>/pwiz/data/misc/PeakDataTest.cpp... Preprocessing /<>/pwiz/data/misc/SampleDatum.hpp... Parsing file /<>/pwiz/data/misc/SampleDatum.hpp... Preprocessing /<>/pwiz/data/misc/SampleDatumTest.cpp... Parsing file /<>/pwiz/data/misc/SampleDatumTest.cpp... Preprocessing /<>/pwiz/data/msdata/BinaryDataEncoder.hpp... Parsing file /<>/pwiz/data/msdata/BinaryDataEncoder.hpp... Preprocessing /<>/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Parsing file /<>/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramList_mzML.hpp... Parsing file /<>/pwiz/data/msdata/ChromatogramList_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Parsing file /<>/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramListBase.hpp... Parsing file /<>/pwiz/data/msdata/ChromatogramListBase.hpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Parsing file /<>/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Preprocessing /<>/pwiz/data/msdata/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/msdata/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/msdata/Diff.hpp... Parsing file /<>/pwiz/data/msdata/Diff.hpp... Preprocessing /<>/pwiz/data/msdata/DiffTest.cpp... Parsing file /<>/pwiz/data/msdata/DiffTest.cpp... Preprocessing /<>/pwiz/data/msdata/examples.hpp... Parsing file /<>/pwiz/data/msdata/examples.hpp... Preprocessing /<>/pwiz/data/msdata/Index_mzML.hpp... Parsing file /<>/pwiz/data/msdata/Index_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/IO.hpp... Parsing file /<>/pwiz/data/msdata/IO.hpp... Preprocessing /<>/pwiz/data/msdata/IOTest.cpp... Parsing file /<>/pwiz/data/msdata/IOTest.cpp... Preprocessing /<>/pwiz/data/msdata/LegacyAdapter.hpp... Parsing file /<>/pwiz/data/msdata/LegacyAdapter.hpp... Preprocessing /<>/pwiz/data/msdata/LegacyAdapterTest.cpp... Parsing file /<>/pwiz/data/msdata/LegacyAdapterTest.cpp... Preprocessing /<>/pwiz/data/msdata/MemoryMRUCache.hpp... Parsing file /<>/pwiz/data/msdata/MemoryMRUCache.hpp... Preprocessing /<>/pwiz/data/msdata/MSData.hpp... Parsing file /<>/pwiz/data/msdata/MSData.hpp... Preprocessing /<>/pwiz/data/msdata/MSDataFile.hpp... Parsing file /<>/pwiz/data/msdata/MSDataFile.hpp... Preprocessing /<>/pwiz/data/msdata/MSDataFileTest.cpp... Parsing file /<>/pwiz/data/msdata/MSDataFileTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSDataMerger.hpp... Parsing file /<>/pwiz/data/msdata/MSDataMerger.hpp... Preprocessing /<>/pwiz/data/msdata/MSDataMergerTest.cpp... Parsing file /<>/pwiz/data/msdata/MSDataMergerTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSDataTest.cpp... Parsing file /<>/pwiz/data/msdata/MSDataTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSnReaderTest.cpp... Parsing file /<>/pwiz/data/msdata/MSnReaderTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSNumpress.hpp... Parsing file /<>/pwiz/data/msdata/MSNumpress.hpp... Preprocessing /<>/pwiz/data/msdata/Reader.hpp... Parsing file /<>/pwiz/data/msdata/Reader.hpp... Preprocessing /<>/pwiz/data/msdata/ReaderTest.cpp... Parsing file /<>/pwiz/data/msdata/ReaderTest.cpp... Preprocessing /<>/pwiz/data/msdata/References.hpp... Parsing file /<>/pwiz/data/msdata/References.hpp... Preprocessing /<>/pwiz/data/msdata/ReferencesTest.cpp... Parsing file /<>/pwiz/data/msdata/ReferencesTest.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MGF.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_MGF.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MGF_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_MGF_Test.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MSn.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_MSn.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MSn_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_MSn_Test.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzML.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Parsing file /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumInfo.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumInfo.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumIterator.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumIterator.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzML.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzXML.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzXML.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListBase.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumListBase.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListBaseTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumListBaseTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListCache.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumListCache.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListCacheTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumListCacheTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListWrapper.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumListWrapper.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Preprocessing /<>/pwiz/data/msdata/TextWriter.hpp... Parsing file /<>/pwiz/data/msdata/TextWriter.hpp... Preprocessing /<>/pwiz/data/msdata/Version.hpp... Parsing file /<>/pwiz/data/msdata/Version.hpp... Preprocessing /<>/pwiz/data/proteome/AminoAcid.hpp... Parsing file /<>/pwiz/data/proteome/AminoAcid.hpp... Preprocessing /<>/pwiz/data/proteome/AminoAcidTest.cpp... Parsing file /<>/pwiz/data/proteome/AminoAcidTest.cpp... Preprocessing /<>/pwiz/data/proteome/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/proteome/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/proteome/Diff.hpp... Parsing file /<>/pwiz/data/proteome/Diff.hpp... Preprocessing /<>/pwiz/data/proteome/DiffTest.cpp... Parsing file /<>/pwiz/data/proteome/DiffTest.cpp... Preprocessing /<>/pwiz/data/proteome/Digestion.hpp... Parsing file /<>/pwiz/data/proteome/Digestion.hpp... Preprocessing /<>/pwiz/data/proteome/DigestionTest.cpp... Parsing file /<>/pwiz/data/proteome/DigestionTest.cpp... Preprocessing /<>/pwiz/data/proteome/examples.hpp... Parsing file /<>/pwiz/data/proteome/examples.hpp... Preprocessing /<>/pwiz/data/proteome/Modification.hpp... Parsing file /<>/pwiz/data/proteome/Modification.hpp... Preprocessing /<>/pwiz/data/proteome/Peptide.hpp... Parsing file /<>/pwiz/data/proteome/Peptide.hpp... Preprocessing /<>/pwiz/data/proteome/PeptideTest.cpp... Parsing file /<>/pwiz/data/proteome/PeptideTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteinListCache.hpp... Parsing file /<>/pwiz/data/proteome/ProteinListCache.hpp... Preprocessing /<>/pwiz/data/proteome/ProteinListCacheTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteinListCacheTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteinListWrapper.hpp... Parsing file /<>/pwiz/data/proteome/ProteinListWrapper.hpp... Preprocessing /<>/pwiz/data/proteome/ProteinListWrapperTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteinListWrapperTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteomeData.hpp... Parsing file /<>/pwiz/data/proteome/ProteomeData.hpp... Preprocessing /<>/pwiz/data/proteome/ProteomeDataFile.hpp... Parsing file /<>/pwiz/data/proteome/ProteomeDataFile.hpp... Preprocessing /<>/pwiz/data/proteome/ProteomeDataFileTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteomeDataFileTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteomeDataTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteomeDataTest.cpp... Preprocessing /<>/pwiz/data/proteome/Reader.hpp... Parsing file /<>/pwiz/data/proteome/Reader.hpp... Preprocessing /<>/pwiz/data/proteome/Reader_FASTA.hpp... Parsing file /<>/pwiz/data/proteome/Reader_FASTA.hpp... Preprocessing /<>/pwiz/data/proteome/ReaderTest.cpp... Parsing file /<>/pwiz/data/proteome/ReaderTest.cpp... Preprocessing /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Parsing file /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Preprocessing /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Parsing file /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Preprocessing /<>/pwiz/data/proteome/TextWriter.hpp... Parsing file /<>/pwiz/data/proteome/TextWriter.hpp... Preprocessing /<>/pwiz/data/proteome/Version.hpp... Parsing file /<>/pwiz/data/proteome/Version.hpp... Preprocessing /<>/pwiz/data/tradata/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/tradata/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/tradata/Diff.hpp... Parsing file /<>/pwiz/data/tradata/Diff.hpp... Preprocessing /<>/pwiz/data/tradata/DiffTest.cpp... Parsing file /<>/pwiz/data/tradata/DiffTest.cpp... Preprocessing /<>/pwiz/data/tradata/examples.hpp... Parsing file /<>/pwiz/data/tradata/examples.hpp... Preprocessing /<>/pwiz/data/tradata/IO.hpp... Parsing file /<>/pwiz/data/tradata/IO.hpp... Preprocessing /<>/pwiz/data/tradata/IOTest.cpp... Parsing file /<>/pwiz/data/tradata/IOTest.cpp... Preprocessing /<>/pwiz/data/tradata/Reader.hpp... Parsing file /<>/pwiz/data/tradata/Reader.hpp... Preprocessing /<>/pwiz/data/tradata/ReaderTest.cpp... Parsing file /<>/pwiz/data/tradata/ReaderTest.cpp... Preprocessing /<>/pwiz/data/tradata/References.hpp... Parsing file /<>/pwiz/data/tradata/References.hpp... Preprocessing /<>/pwiz/data/tradata/ReferencesTest.cpp... Parsing file /<>/pwiz/data/tradata/ReferencesTest.cpp... Preprocessing /<>/pwiz/data/tradata/Serializer_traML.hpp... Parsing file /<>/pwiz/data/tradata/Serializer_traML.hpp... Preprocessing /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Parsing file /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Preprocessing /<>/pwiz/data/tradata/TextWriter.hpp... Parsing file /<>/pwiz/data/tradata/TextWriter.hpp... Preprocessing /<>/pwiz/data/tradata/TraData.hpp... Parsing file /<>/pwiz/data/tradata/TraData.hpp... Preprocessing /<>/pwiz/data/tradata/TraDataFile.hpp... Parsing file /<>/pwiz/data/tradata/TraDataFile.hpp... Preprocessing /<>/pwiz/data/tradata/TraDataFileTest.cpp... Parsing file /<>/pwiz/data/tradata/TraDataFileTest.cpp... Preprocessing /<>/pwiz/data/tradata/TraDataTest.cpp... Parsing file /<>/pwiz/data/tradata/TraDataTest.cpp... Preprocessing /<>/pwiz/data/tradata/Version.hpp... Parsing file /<>/pwiz/data/tradata/Version.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Parsing file /<>/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Parsing file /<>/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Parsing file /<>/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp... Parsing file /<>/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Parsing file /<>/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Parsing file /<>/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp... Parsing file /<>/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp... Parsing file /<>/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Preprocessing /<>/pwiz/utility/chemistry/Chemistry.hpp... Parsing file /<>/pwiz/utility/chemistry/Chemistry.hpp... Preprocessing /<>/pwiz/utility/chemistry/ChemistryData.hpp... Parsing file /<>/pwiz/utility/chemistry/ChemistryData.hpp... Preprocessing /<>/pwiz/utility/chemistry/ChemistryTest.cpp... Parsing file /<>/pwiz/utility/chemistry/ChemistryTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/Ion.hpp... Parsing file /<>/pwiz/utility/chemistry/Ion.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeTable.hpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeTable.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeTableTest.cpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeTableTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/MZTolerance.hpp... Parsing file /<>/pwiz/utility/chemistry/MZTolerance.hpp... Preprocessing /<>/pwiz/utility/chemistry/MZToleranceTest.cpp... Parsing file /<>/pwiz/utility/chemistry/MZToleranceTest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/base.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/base.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/basetest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/basetest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/constants.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/constants.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/copy_iftest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/copy_iftest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/copyif.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/copyif.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/cumsum.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/cumsum.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/cumsumtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/cumsumtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/diff.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/diff.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/difftest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/difftest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/interpolate.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/interpolate.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/scale.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/scale.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/utilities/base.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/utilities/base.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/filter.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/filter.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Parsing file /<>/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Parsing file /<>/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Preprocessing /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Parsing file /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Preprocessing /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp... Parsing file /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp... Preprocessing /<>/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Parsing file /<>/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/bin1d.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/bin1d.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/breakspec.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/breakspec.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/convert2dense.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/convert2dense.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Parsing file /<>/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Preprocessing /<>/pwiz/utility/math/erf.hpp... Parsing file /<>/pwiz/utility/math/erf.hpp... Preprocessing /<>/pwiz/utility/math/erfTest.cpp... Parsing file /<>/pwiz/utility/math/erfTest.cpp... Preprocessing /<>/pwiz/utility/math/HouseholderQR.hpp... Parsing file /<>/pwiz/utility/math/HouseholderQR.hpp... Preprocessing /<>/pwiz/utility/math/HouseholderQRTest.cpp... Parsing file /<>/pwiz/utility/math/HouseholderQRTest.cpp... Preprocessing /<>/pwiz/utility/math/LinearLeastSquares.hpp... Parsing file /<>/pwiz/utility/math/LinearLeastSquares.hpp... Preprocessing /<>/pwiz/utility/math/LinearLeastSquaresTest.cpp... Parsing file /<>/pwiz/utility/math/LinearLeastSquaresTest.cpp... Preprocessing /<>/pwiz/utility/math/LinearSolver.hpp... Parsing file /<>/pwiz/utility/math/LinearSolver.hpp... Preprocessing /<>/pwiz/utility/math/LinearSolverTest.cpp... Parsing file /<>/pwiz/utility/math/LinearSolverTest.cpp... Preprocessing /<>/pwiz/utility/math/MatchedFilter.hpp... Parsing file /<>/pwiz/utility/math/MatchedFilter.hpp... Preprocessing /<>/pwiz/utility/math/MatchedFilterTest.cpp... Parsing file /<>/pwiz/utility/math/MatchedFilterTest.cpp... Preprocessing /<>/pwiz/utility/math/MatrixInverse.hpp... Parsing file /<>/pwiz/utility/math/MatrixInverse.hpp... Preprocessing /<>/pwiz/utility/math/OrderedPair.hpp... Parsing file /<>/pwiz/utility/math/OrderedPair.hpp... Preprocessing /<>/pwiz/utility/math/OrderedPairTest.cpp... Parsing file /<>/pwiz/utility/math/OrderedPairTest.cpp... Preprocessing /<>/pwiz/utility/math/Parabola.hpp... Parsing file /<>/pwiz/utility/math/Parabola.hpp... Preprocessing /<>/pwiz/utility/math/ParabolaTest.cpp... Parsing file /<>/pwiz/utility/math/ParabolaTest.cpp... Preprocessing /<>/pwiz/utility/math/qr.hpp... Parsing file /<>/pwiz/utility/math/qr.hpp... Preprocessing /<>/pwiz/utility/math/qrTest.cpp... Parsing file /<>/pwiz/utility/math/qrTest.cpp... Preprocessing /<>/pwiz/utility/math/round.hpp... Parsing file /<>/pwiz/utility/math/round.hpp... Preprocessing /<>/pwiz/utility/math/Stats.hpp... Parsing file /<>/pwiz/utility/math/Stats.hpp... Preprocessing /<>/pwiz/utility/math/StatsTest.cpp... Parsing file /<>/pwiz/utility/math/StatsTest.cpp... Preprocessing /<>/pwiz/utility/math/Types.hpp... Parsing file /<>/pwiz/utility/math/Types.hpp... Preprocessing /<>/pwiz/utility/minimxml/SAXParser.hpp... Parsing file /<>/pwiz/utility/minimxml/SAXParser.hpp... Preprocessing /<>/pwiz/utility/minimxml/SAXParserTest.cpp... Parsing file /<>/pwiz/utility/minimxml/SAXParserTest.cpp... Preprocessing /<>/pwiz/utility/minimxml/XMLWriter.hpp... Parsing file /<>/pwiz/utility/minimxml/XMLWriter.hpp... Preprocessing /<>/pwiz/utility/minimxml/XMLWriterTest.cpp... Parsing file /<>/pwiz/utility/minimxml/XMLWriterTest.cpp... Preprocessing /<>/pwiz/utility/misc/almost_equal.hpp... Parsing file /<>/pwiz/utility/misc/almost_equal.hpp... Preprocessing /<>/pwiz/utility/misc/almost_equal_test.cpp... Parsing file /<>/pwiz/utility/misc/almost_equal_test.cpp... Preprocessing /<>/pwiz/utility/misc/Base64.hpp... Parsing file /<>/pwiz/utility/misc/Base64.hpp... Preprocessing /<>/pwiz/utility/misc/Base64Test.cpp... Parsing file /<>/pwiz/utility/misc/Base64Test.cpp... Preprocessing /<>/pwiz/utility/misc/BinaryData.hpp... Parsing file /<>/pwiz/utility/misc/BinaryData.hpp... Preprocessing /<>/pwiz/utility/misc/BinaryDataTest.cpp... Parsing file /<>/pwiz/utility/misc/BinaryDataTest.cpp... Preprocessing /<>/pwiz/utility/misc/CharIndexedVector.hpp... Parsing file /<>/pwiz/utility/misc/CharIndexedVector.hpp... Preprocessing /<>/pwiz/utility/misc/ClickwrapPrompter.hpp... Parsing file /<>/pwiz/utility/misc/ClickwrapPrompter.hpp... Preprocessing /<>/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Parsing file /<>/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Preprocessing /<>/pwiz/utility/misc/Container.hpp... Parsing file /<>/pwiz/utility/misc/Container.hpp... Preprocessing /<>/pwiz/utility/misc/cpp_cli_utilities.hpp... Parsing file /<>/pwiz/utility/misc/cpp_cli_utilities.hpp... Preprocessing /<>/pwiz/utility/misc/DateTime.hpp... Parsing file /<>/pwiz/utility/misc/DateTime.hpp... Preprocessing /<>/pwiz/utility/misc/DateTimeTest.cpp... Parsing file /<>/pwiz/utility/misc/DateTimeTest.cpp... Preprocessing /<>/pwiz/utility/misc/endian.hpp... Parsing file /<>/pwiz/utility/misc/endian.hpp... Preprocessing /<>/pwiz/utility/misc/endian_test.cpp... Parsing file /<>/pwiz/utility/misc/endian_test.cpp... Preprocessing /<>/pwiz/utility/misc/Environment.hpp... Parsing file /<>/pwiz/utility/misc/Environment.hpp... Preprocessing /<>/pwiz/utility/misc/Exception.hpp... Parsing file /<>/pwiz/utility/misc/Exception.hpp... Preprocessing /<>/pwiz/utility/misc/ExceptionTest.cpp... Parsing file /<>/pwiz/utility/misc/ExceptionTest.cpp... Preprocessing /<>/pwiz/utility/misc/Export.hpp... Parsing file /<>/pwiz/utility/misc/Export.hpp... Preprocessing /<>/pwiz/utility/misc/FailTest.cpp... Parsing file /<>/pwiz/utility/misc/FailTest.cpp... Preprocessing /<>/pwiz/utility/misc/Filesystem.hpp... Parsing file /<>/pwiz/utility/misc/Filesystem.hpp... Preprocessing /<>/pwiz/utility/misc/FilesystemTest.cpp... Parsing file /<>/pwiz/utility/misc/FilesystemTest.cpp... Preprocessing /<>/pwiz/utility/misc/Image.hpp... Parsing file /<>/pwiz/utility/misc/Image.hpp... Preprocessing /<>/pwiz/utility/misc/IntegerSet.hpp... Parsing file /<>/pwiz/utility/misc/IntegerSet.hpp... Preprocessing /<>/pwiz/utility/misc/IntegerSetTest.cpp... Parsing file /<>/pwiz/utility/misc/IntegerSetTest.cpp... Preprocessing /<>/pwiz/utility/misc/IterationListener.hpp... Parsing file /<>/pwiz/utility/misc/IterationListener.hpp... Preprocessing /<>/pwiz/utility/misc/IterationListenerTest.cpp... Parsing file /<>/pwiz/utility/misc/IterationListenerTest.cpp... Preprocessing /<>/pwiz/utility/misc/mru_list.hpp... Parsing file /<>/pwiz/utility/misc/mru_list.hpp... Preprocessing /<>/pwiz/utility/misc/mru_list_test.cpp... Parsing file /<>/pwiz/utility/misc/mru_list_test.cpp... Preprocessing /<>/pwiz/utility/misc/MSIHandler.hpp... Parsing file /<>/pwiz/utility/misc/MSIHandler.hpp... Preprocessing /<>/pwiz/utility/misc/Once.hpp... Parsing file /<>/pwiz/utility/misc/Once.hpp... Preprocessing /<>/pwiz/utility/misc/optimized_lexical_cast.hpp... Parsing file /<>/pwiz/utility/misc/optimized_lexical_cast.hpp... Preprocessing /<>/pwiz/utility/misc/pinned_gcroot.h... Parsing file /<>/pwiz/utility/misc/pinned_gcroot.h... Preprocessing /<>/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Parsing file /<>/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Preprocessing /<>/pwiz/utility/misc/SHA1.h... Parsing file /<>/pwiz/utility/misc/SHA1.h... Preprocessing /<>/pwiz/utility/misc/SHA1_ostream.hpp... Parsing file /<>/pwiz/utility/misc/SHA1_ostream.hpp... Preprocessing /<>/pwiz/utility/misc/SHA1_ostream_test.cpp... Parsing file /<>/pwiz/utility/misc/SHA1_ostream_test.cpp... Preprocessing /<>/pwiz/utility/misc/SHA1Calculator.hpp... Parsing file /<>/pwiz/utility/misc/SHA1Calculator.hpp... Preprocessing /<>/pwiz/utility/misc/SHA1CalculatorTest.cpp... Parsing file /<>/pwiz/utility/misc/SHA1CalculatorTest.cpp... Preprocessing /<>/pwiz/utility/misc/shared_map.hpp... Parsing file /<>/pwiz/utility/misc/shared_map.hpp... Preprocessing /<>/pwiz/utility/misc/Singleton.hpp... Parsing file /<>/pwiz/utility/misc/Singleton.hpp... Preprocessing /<>/pwiz/utility/misc/Std.hpp... Parsing file /<>/pwiz/utility/misc/Std.hpp... Preprocessing /<>/pwiz/utility/misc/Stream.hpp... Parsing file /<>/pwiz/utility/misc/Stream.hpp... Preprocessing /<>/pwiz/utility/misc/String.hpp... Parsing file /<>/pwiz/utility/misc/String.hpp... Preprocessing /<>/pwiz/utility/misc/TabReader.hpp... Parsing file /<>/pwiz/utility/misc/TabReader.hpp... Preprocessing /<>/pwiz/utility/misc/TabReaderTest.cpp... Parsing file /<>/pwiz/utility/misc/TabReaderTest.cpp... Preprocessing /<>/pwiz/utility/misc/Timer.hpp... Parsing file /<>/pwiz/utility/misc/Timer.hpp... Preprocessing /<>/pwiz/utility/misc/unit.hpp... Parsing file /<>/pwiz/utility/misc/unit.hpp... Preprocessing /<>/pwiz/util/<>/pwiz/utility/findmf/base/base/constants.hpp:28: warning: the name 'Constants.h' supplied as the argument in the \file statement is not an input file /<>/pwiz/utility/findmf/base/base/cumsum.hpp:27: warning: the name 'cumsum.h' supplied as the argument in the \file statement is not an input file /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp:29: warning: the name 'MassCompareFunctors.h' supplied as the argument in the \file statement is not an input file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:42: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::frequency::FrequencyEstimatorSimple::Type /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp:43: warning: documented symbol 'enum PWIZ_API_DECL pwiz::frequency::TruncatedLorentzian::ParameterIndex' was not declared or defined. /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp:75: warning: documented symbol 'enum PWIZ_API_DECL pwiz::analysis::MSDataAnalyzer::UpdateRequest' was not declared or defined. /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp:164: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::analysis::MSDataAnalyzerDriver::Status /<>/pwiz/data/common/cv.hpp:112: warning: documented symbol 'enum PWIZ_API_DECL pwiz::cv::pwiz::cv::CVID' was not declared or defined. /<>/pwiz/data/common/Unimod.hpp:80: warning: member with no name found. /<>/pwiz/data/identdata/IdentDataFile.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::identdata::IdentDataFile::pwiz::identdata::IdentDataFile::Format' was not declared or defined. /<>/pwiz/data/identdata/IO.hpp:211: warning: documented symbol 'enum PWIZ_API_DECL pwiz::identdata::IO::AnalysisDataFlag' was not declared or defined. /<>/pwiz/data/identdata/IO.hpp:255: warning: documented symbol 'enum PWIZ_API_DECL pwiz::identdata::IO::SequenceCollectionFlag' was not declared or defined. /<>/pwiz/data/misc/FrequencyData.hpp:54: warning: documented symbol 'enum PWIZ_API_DECL pwiz::data::FrequencyData::IOMode' was not declared or defined. /<>/pwiz/data/msdata/IO.hpp:173: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::IO::BinaryDataFlag' was not declared or defined. /<>/pwiz/data/msdata/IO.hpp:212: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::IO::SpectrumListFlag' was not declared or defined. /<>/pwiz/data/msdata/MemoryMRUCache.hpp:34: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::MemoryMRUCacheMode' was not declared or defined. /<>/pwiz/data/msdata/MSDataFile.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::MSDataFile::pwiz::msdata::MSDataFile::Format' was not declared or defined. /<>/pwiz/data/proteome/AminoAcid.hpp:43: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::proteome::AminoAcid::pwiz::proteome::AminoAcid::Type /<>/pwiz/data/proteome/Digestion.hpp:117: warning: no matching class member found for enum PWIZ_API_DECL pwiz::proteome::Digestion::pwiz::proteome::Digestion::Specificity /<>/pwiz/data/proteome/Peptide.hpp:40: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::pwiz::proteome::ModificationParsing' was not declared or defined. /<>/pwiz/data/proteome/Peptide.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::pwiz::proteome::ModificationDelimiter' was not declared or defined. /<>/pwiz/data/proteome/ProteinListCache.hpp:36: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::ProteinListCacheMode' was not declared or defined. /<>/pwiz/data/proteome/ProteomeDataFile.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::ProteomeDataFile::pwiz::proteome::ProteomeDataFile::Format' was not declared or defined. /<>/pwiz/data/tradata/TraDataFile.hpp:45: warning: documented symbol 'enum PWIZ_API_DECL pwiz::tradata::TraDataFile::pwiz::tradata::TraDataFile::Format' was not declared or defined. /<>/pwiz/utility/chemistry/Chemistry.hpp:78: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::chemistry::Element::pwiz::chemistry::Element::Type /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp:44: warning: documented symbol 'enum PWIZ_API_DECL pwiz::chemistry::IsotopeCalculator::NormalizationFlags' was not declared or defined. /<>/pwiz/utility/math/LinearLeastSquares.hpp:34: warning: documented symbol 'enum PWIZ_API_DECL pwiz::math::LinearLeastSquaresType' was not declared or defined. /<>/pwiz/utility/math/LinearSolver.hpp:47: warning: documented symbol 'enum PWIZ_API_DECL pwiz::math::LinearSolverType' was not declared or defined. /<>/pwiz/utility/minimxml/XMLWriter.hpp:52: warning: documented symbol 'enum PWIZ_API_DECL pwiz::minimxml::XMLWriter::pwiz::minimxml::XMLWriter::StyleFlag' was not declared or defined. /<>/pwiz/utility/misc/Image.hpp:64: warning: documented symbol 'enum PWIZ_API_DECL pwiz::util::Image::Align' was not declared or defined. /<>/pwiz/utility/misc/Image.hpp:65: warning: documented symbol 'enum PWIZ_API_DECL pwiz::util::Image::Size' was not declared or defined. /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /<>/pwiz/data/common/cv.hpp:875: warning: Found unknown command '@LDI' /<>/pwiz/data/common/cv.hpp:878: warning: Found unknown command '@LDI' /<>/pwiz/data/common/cv.hpp:4580: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:4583: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:8945: warning: Unsupported xml/html tag found /<>/pwiz/data/common/cv.hpp:7889: warning: Found unknown command '\t' /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:56: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:57: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found sh: 1: latex: not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! ity/misc/VendorReaderTestHarness.hpp... Parsing file /<>/pwiz/utility/misc/VendorReaderTestHarness.hpp... Preprocessing /<>/pwiz/utility/misc/virtual_map.hpp... Parsing file /<>/pwiz/utility/misc/virtual_map.hpp... Preprocessing /<>/pwiz/utility/proteome/IPIFASTADatabase.hpp... Parsing file /<>/pwiz/utility/proteome/IPIFASTADatabase.hpp... Preprocessing /<>/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Parsing file /<>/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Preprocessing /<>/pwiz/Version.hpp... Parsing file /<>/pwiz/Version.hpp... Preprocessing /<>/doc/dox/mainpage.hpp... Parsing file /<>/doc/dox/mainpage.hpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating example documentation... Generating file sources... Generating code for file mainpage.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_FilterTest.cpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefinerTest.cpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListFactoryTest.cpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/ChromatogramListWrapperTest.cpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp... Generating code for file /<>/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Generating code for file /<>/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmootherTest.cpp... Generating code for file /<>/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Generating code for file /<>/pwiz/analysis/common/CwtPeakDetector.hpp... Generating code for file /<>/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Generating code for file /<>/pwiz/analysis/common/DataFilter.hpp... Generating code for file /<>/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Generating code for file /<>/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Generating code for file /<>/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Generating code for file /<>/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Generating code for file /<>/pwiz/analysis/common/PeakDetector.hpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetector.hpp... Generating code for file /<>/pwiz/analysis/common/Smoother.hpp... Generating code for file /<>/pwiz/analysis/common/WhittakerSmoother.hpp... Generating code for file /<>/pwiz/analysis/common/WhittakerSmootherTest.cpp... Generating code for file /<>/pwiz/analysis/common/ZeroSampleFiller.hpp... Generating code for file /<>/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Generating code for file /<>/pwiz/analysis/demux/CubicHermiteSpline.hpp... Generating code for file /<>/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxDebugReader.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxDebugWriter.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxHelpers.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxHelpersTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxSolver.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxSolverTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxTypes.hpp... Generating code for file /<>/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Generating code for file /<>/pwiz/analysis/demux/IDemultiplexer.hpp... Generating code for file /<>/pwiz/analysis/demux/IInterpolation.hpp... Generating code for file /<>/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Generating code for file /<>/pwiz/analysis/demux/MatrixIO.hpp... Generating code for file /<>/pwiz/analysis/demux/MatrixIOTest.cpp... Generating code for file /<>/pwiz/analysis/demux/MSXDemultiplexer.hpp... Generating code for file /<>/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Generating code for file /<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Generating code for file /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Generating code for file /<>/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/DerivativeTest.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimator.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Generating code for file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Generating code for file /<>/pwiz/analysis/frequency/ParameterEstimator.hpp... Generating code for file /<>/pwiz/analysis/frequency/ParametrizedFunction.hpp... Generating code for file /<>/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... 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Generating code for file /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp... Generating code for file /<>/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Generating code for file /<>/pwiz/analysis/passive/MSDataCache.hpp... Generating code for file /<>/pwiz/analysis/passive/MSDataCacheTest.cpp... Generating code for file /<>/pwiz/analysis/passive/PepXMLCat.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionAnalyzer.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionSIC.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionSlice.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionTIC.hpp... Generating code for file /<>/pwiz/analysis/passive/RunSummary.hpp... Generating code for file /<>/pwiz/analysis/passive/SpectrumBinaryData.hpp... Generating code for file /<>/pwiz/analysis/passive/SpectrumTable.hpp... Generating code for file /<>/pwiz/analysis/passive/TabularConfig.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/Noise.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... 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Generating docs for file /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... 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Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Generating docs for file /<>/libpwiz-3.0.183/<>/pwiz/data/common/cv.hpp:875: warning: Found unknown command '@LDI' /<>/pwiz/data/common/cv.hpp:878: warning: Found unknown command '@LDI' /<>/pwiz/data/common/cv.hpp:4580: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:4583: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:7889: warning: Found unknown command '\t' /<>/pwiz/data/common/cv.hpp:8945: warning: Unsupported xml/html tag found /<>/pwiz/data/common/cv.hpp:875: warning: Found unknown command '@LDI' /<>/pwiz/data/common/cv.hpp:878: warning: Found unknown command '@LDI' /<>/pwiz/data/common/cv.hpp:4580: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:4583: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:7889: warning: Found unknown command '\t' /<>/pwiz/data/common/cv.hpp:8945: warning: Unsupported xml/html tag found 42/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Generating docs for file /<>/pwiz/analysis/Version.hpp... Generating docs for file /<>/pwiz/data/identdata/Version.hpp... Generating docs for file /<>/pwiz/data/msdata/Version.hpp... Generating docs for file /<>/pwiz/data/proteome/Version.hpp... Generating docs for file /<>/pwiz/data/tradata/Version.hpp... Generating docs for file /<>/pwiz/Version.hpp... Generating docs for file /<>/pwiz/data/common/BinaryIndexStream.hpp... Generating docs for file /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Generating docs for file /<>/pwiz/data/common/cv.hpp... Generating docs for file /<>/pwiz/data/common/cvtest.cpp... Generating docs for file /<>/pwiz/data/common/CVTranslator.hpp... Generating docs for file /<>/pwiz/data/common/CVTranslatorTest.cpp... Generating docs for file /<>/pwiz/data/common/diff_std.hpp... Generating docs for file /<>/pwiz/data/common/diff_std_test.cpp... Generating docs for file /<>/pwiz/data/common/Index.hpp... Generating docs for file /<>/pwiz/data/common/MemoryIndex.hpp... Generating docs for file /<>/pwiz/data/common/MemoryIndexTest.cpp... Generating docs for file /<>/pwiz/data/common/obo.hpp... Generating docs for file /<>/pwiz/data/common/obotest.cpp... Generating docs for file /<>/pwiz/data/common/ParamTypes.hpp... Generating docs for file /<>/pwiz/data/common/ParamTypesTest.cpp... Generating docs for file /<>/pwiz/data/common/Unimod.hpp... Generating docs for file /<>/pwiz/data/common/UnimodTest.cpp... Generating docs for file /<>/pwiz/data/identdata/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/msdata/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/proteome/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/tradata/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/identdata/DelimReader.hpp... Generating docs for file /<>/pwiz/data/identdata/DelimWriter.hpp... Generating docs for file /<>/pwiz/data/identdata/Diff.hpp... Generating docs for file /<>/pwiz/data/msdata/Diff.hpp... Generating docs for file /<>/pwiz/data/proteome/Diff.hpp... Generating docs for file /<>/pwiz/data/tradata/Diff.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/diff.hpp... Generating docs for file /<>/pwiz/data/identdata/DiffTest.cpp... Generating docs for file /<>/pwiz/data/msdata/DiffTest.cpp... Generating docs for file /<>/pwiz/data/proteome/DiffTest.cpp... Generating docs for file /<>/pwiz/data/tradata/DiffTest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/difftest.cpp... Generating docs for file /<>/pwiz/data/identdata/examples.hpp... Generating docs for file /<>/pwiz/data/msdata/examples.hpp... Generating docs for file /<>/pwiz/data/proteome/examples.hpp... Generating docs for file /<>/pwiz/data/tradata/examples.hpp... Generating docs for file /<>/pwiz/data/identdata/ExtendedReadTest.cpp... Generating docs for file /<>/pwiz/data/identdata/IdentData.hpp... Generating docs for file /<>/pwiz/data/identdata/IdentDataFile.hpp... Generating docs for file /<>/pwiz/data/identdata/IdentDataTest.cpp... Generating docs for file /<>/pwiz/data/identdata/IO.hpp... Generating docs for file /<>/pwiz/data/msdata/IO.hpp... Generating docs for file /<>/pwiz/data/tradata/IO.hpp... Generating docs for file /<>/pwiz/data/identdata/IOTest.cpp... Generating docs for file /<>/pwiz/data/msdata/IOTest.cpp... Generating docs for file /<>/pwiz/data/tradata/IOTest.cpp... Generating docs for file /<>/pwiz/data/identdata/KwCVMap.hpp... Generating docs for file /<>/pwiz/data/identdata/KwCVMapTest.cpp... Generating docs for file /<>/pwiz/data/identdata/MascotReader.hpp... Generating docs for file /<>/pwiz/data/identdata/MzidPredicates.hpp... Generating docs for file /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Generating docs for file /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Generating docs for file /<>/pwiz/data/identdata/Reader.hpp... Generating docs for file /<>/pwiz/data/msdata/Reader.hpp... Generating docs for file /<>/pwiz/data/proteome/Reader.hpp... Generating docs for file /<>/pwiz/data/tradata/Reader.hpp... Generating docs for file /<>/pwiz/data/identdata/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/msdata/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/tradata/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/identdata/References.hpp... Generating docs for file /<>/pwiz/data/msdata/References.hpp... Generating docs for file /<>/pwiz/data/tradata/References.hpp... Generating docs for file /<>/pwiz/data/identdata/ReferencesTest.cpp... Generating docs for file /<>/pwiz/data/msdata/ReferencesTest.cpp... Generating docs for file /<>/pwiz/data/tradata/ReferencesTest.cpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_mzid.hpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_mzid_Test.cpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_pepXML.hpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Generating docs for file /<>/pwiz/data/<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /identdata/Serializer_protXML.hpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_protXML_Test.cpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_Text.hpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Generating docs for file /<>/pwiz/data/identdata/TextWriter.hpp... Generating docs for file /<>/pwiz/data/msdata/TextWriter.hpp... Generating docs for file /<>/pwiz/data/proteome/TextWriter.hpp... Generating docs for file /<>/pwiz/data/tradata/TextWriter.hpp... Generating docs for file /<>/pwiz/data/misc/CalibrationParameters.hpp... Generating docs for file /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Generating docs for file /<>/pwiz/data/misc/FrequencyData.hpp... Generating docs for file /<>/pwiz/data/misc/FrequencyDataTest.cpp... Generating docs for file /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Generating docs for file /<>/pwiz/data/misc/MinimumPepXML.hpp... Generating docs for file /<>/pwiz/data/misc/MinimumPepXMLTest.cpp... Generating docs for file /<>/pwiz/data/misc/PeakData.hpp... Generating docs for file /<>/pwiz/data/misc/PeakDataTest.cpp... Generating docs for file /<>/pwiz/data/misc/SampleDatum.hpp... Generating docs for file /<>/pwiz/data/misc/SampleDatumTest.cpp... Generating docs for file /<>/pwiz/data/msdata/BinaryDataEncoder.hpp... Generating docs for file /<>/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Generating docs for file /<>/pwiz/data/msdata/ChromatogramList_mzML.hpp... Generating docs for file /<>/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/ChromatogramListBase.hpp... Generating docs for file /<>/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Generating docs for file /<>/pwiz/data/msdata/Index_mzML.hpp... Generating docs for file /<>/pwiz/data/msdata/LegacyAdapter.hpp... Generating docs for file /<>/pwiz/data/msdata/LegacyAdapterTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MemoryMRUCache.hpp... Generating docs for file /<>/pwiz/data/msdata/MSData.hpp... Generating docs for file /<>/pwiz/data/msdata/MSDataFile.hpp... Generating docs for file /<>/pwiz/data/msdata/MSDataFileTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MSDataMerger.hpp... Generating docs for file /<>/pwiz/data/msdata/MSDataMergerTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MSDataTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MSnReaderTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MSNumpress.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_MGF.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_MGF_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_MSn.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_MSn_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzML.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumInfo.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumIterator.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_mzML.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_mzXML.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListBase.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListBaseTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListCache.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListCacheTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListWrapper.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Generating docs for file /<>/pwiz/data/proteome/AminoAcid.hpp... Generating docs for file /<>/pwiz/data/proteome/AminoAcidTest.cpp... Generating docs for file /<>/pwiz/data/proteome/Digestion.hpp... Generating docs for file /<>/pwiz/data/proteome/DigestionTest.cpp... Generating docs for file /<>/pwiz/data/proteome/Modification.hpp... Generating docs for file /<>/pwiz/data/proteome/Peptide.hpp... Generating docs for file /<>/pwiz/data/proteome/PeptideTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListCache.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListCacheTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListWrapper.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListWrapperTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeData.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeDataFile.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeDataFileTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeDataTest.cpp... Generating docs for file /<>/pwiz/data/proteome/Reader_FASTA.hpp... Generating docs for file /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Generating docs for file /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Generating docs for file /<>/pwiz/data/tradata/Serializer_traML.hpp... Generating docs for file /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Generating docs for file /<>/pwiz/data/tradata/TraData.hpp... Generating docs for file /<>/pwiz/data/tradata/TraDataFile.hpp... Generating docs for file /<>/pwiz/data/tradata/TraDataFileTest.cpp... Generating docs for file /<>/pwiz/data/tradata/TraDataTest.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Generating docs for file /<>/pwiz/utility/chemistry/Chemistry.hpp... Generating docs for file /<>/pwiz/utility/chemistry/ChemistryData.hpp... Generating docs for file /<>/pwiz/utility/chemistry/ChemistryTest.cpp... Generating docs for file /<>/pwiz/utility/chemistry/Ion.hpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeTable.hpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeTableTest.cpp... Generating docs for file /<>/pwiz/utility/chemistry/MZTolerance.hpp... Generating docs for file /<>/pwiz/utility/chemistry/MZToleranceTest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/base.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/utilities/base.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/basetest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/constants.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/copy_iftest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/copyif.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/cumsum.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/cumsumtest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/interpolate.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/scale.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/filter.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/bin1d.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/breakspec.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/convert2dense.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Generating docs for file /<>/pwiz/utility/math/erf.hpp... Generating docs for file /<>/pwiz/utility/math/erfTest.cpp... Generating docs for file /<>/pwiz/utility/math/HouseholderQR.hpp... Generating docs for file /<>/pwiz/utility/math/HouseholderQRTest.cpp... Generating docs for file /<>/pwiz/utility/math/LinearLeastSquares.hpp... Generating docs for file /<>/pwiz/utility/math/LinearLeastSquaresTest.cpp... Generating docs for file /<>/pwiz/utility/math/LinearSolver.hpp... Generating docs for file /<>/pwiz/utility/math/LinearSolverTest.cpp... Generating docs for file /<>/pwiz/utility/math/MatchedFilter.hpp... Generating docs for file /<>/pwiz/utility/math/MatchedFilterTest.cpp... Generating docs for file /<>/pwiz/utility/math/MatrixInverse.hpp... Generating docs for file /<>/pwiz/utility/math/OrderedPair.hpp... Generating docs for file /<>/pwiz/utility/math/OrderedPairTest.cpp... Generating docs for file /<>/pwiz/utility/math/Parabola.hpp... Generating docs for file /<>/pwiz/utility/math/ParabolaTest.cpp... Generating docs for file /<>/pwiz/utility/math/qr.hpp... Generating docs for file /<>/pwiz/utility/math/qrTest.cpp... Generating docs for file /<>/pwiz/utility/math/round.hpp... Generating docs for file /<>/pwiz/utility/math/Stats.hpp... Generating docs for file /<>/pwiz/utility/math/StatsTest.cpp... Generating docs for file /<>/pwiz/utility/math/Types.hpp... Generating docs for file /<>/pwiz/utility/minimxml/SAXParser.hpp... Generating docs for file /<>/pwiz/utility/minimxml/SAXParserTest.cpp... Generating docs for file /<>/pwiz/utility/minimxml/XMLWriter.hpp... Generating docs for file /<>/pwiz/utility/minimxml/XMLWriterTest.cpp... Generating docs for file /<>/pwiz/utility/misc/almost_equal.hpp... Generating docs for file /<>/pwiz/utility/misc/almost_equal_test.cpp... Generating docs for file /<>/pwiz/utility/misc/Base64.hpp... Generating docs for file /<>/pwiz/utility/misc/Base64Test.cpp... Generating docs for file /<>/pwiz/utility/misc/BinaryData.hpp... Generating docs for file /<>/pwiz/utility/misc/BinaryDataTest.cpp... Generating docs for file /<>/pwiz/utility/misc/CharIndexedVector.hpp... Generating docs for file /<>/pwiz/utility/misc/ClickwrapPrompter.hpp... Generating docs for file /<>/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Generating docs for file /<>/pwiz/utility/misc/Container.hpp... Generating docs for file /<>/pwiz/utility/misc/cpp_cli_utilities.hpp... Generating docs for file /<>/pwiz/utility/misc/DateTime.hpp... Generating docs for file /<>/pwiz/utility/misc/DateTimeTest.cpp... Generating docs for file /<>/pwiz/utility/misc/endian.hpp... Generating docs for file /<>/pwiz/utility/misc/endian_test.cpp... Generating docs for file /<>/pwiz/utility/misc/Environment.hpp... Generating docs for file /<>/pwiz/utility/misc/Exception.hpp... Generating docs for file /<>/pwiz/utility/misc/ExceptionTest.cpp... Generating docs for file /<>/pwiz/utility/misc/Export.hpp... Generating docs for file /<>/pwiz/utility/misc/FailTest.cpp... Generating docs for file /<>/pwiz/utility/misc/Filesystem.hpp... Generating docs for file /<>/pwiz/utility/misc/FilesystemTest.cpp... Generating docs for file /<>/pwiz/utility/misc/Image.hpp... Generating docs for file /<>/pwiz/utility/misc/IntegerSet.hpp... Generating docs for file /<>/pwiz/utility/misc/IntegerSetTest.cpp... Generating docs for file /<>/pwiz/utility/misc/IterationListener.hpp... Generating docs for file /<>/pwiz/utility/misc/IterationListenerTest.cpp... Generating docs for file /<>/pwiz/utility/misc/mru_list.hpp... Generating docs for file /<>/pwiz/utility/misc/mru_list_test.cpp... Generating docs for file /<>/pwiz/utility/misc/MSIHandler.hpp... Generating docs for file /<>/pwiz/utility/misc/Once.hpp... Generating docs for file /<>/pwiz/utility/misc/optimized_lexical_cast.hpp... Generating docs for file /<>/pwiz/utility/misc/pinned_gcroot.h... Generating docs for file /<>/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Generating docs for file /<>/pwiz/utility/misc/SHA1.h... Generating docs for file /<>/pwiz/utility/misc/SHA1_ostream.hpp... Generating docs for file /<>/pwiz/utility/misc/SHA1_ostream_test.cpp... Generating docs for file /<>/pwiz/utility/misc/SHA1Calculator.hpp... Generating docs for file /<>/pwiz/utility/misc/SHA1CalculatorTest.cpp... Generating docs for file /<>/pwiz/utility/misc/shared_map.hpp... Generating docs for file /<>/pwiz/utility/misc/Singleton.hpp... Generating docs for file /<>/pwiz/utility/misc/Std.hpp... Generating docs for file /<>/pwiz/utility/misc/Stream.hpp... Generating docs for file /<>/pwiz/utility/misc/String.hpp... Generating docs for file /<>/pwiz/utility/misc/TabReader.hpp... Generating docs for file /<>/pwiz/utility/misc/TabReaderTest.cpp... Generating docs for file /<>/pwiz/utility/misc/Timer.hpp... Generating docs for file /<>/pwiz/utility/misc/unit.hpp... Generating docs for file /<>/pwiz/utility/misc/VendorReaderTestHarness.hpp... Generating docs for file /<>/pwiz/utility/misc/virtual_map.hpp... Generating docs for file /<>/pwiz/utility/proteome/IPIFASTADatabase.hpp... Generating docs for file /<>/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound AnotherRootHandler... Generating docs for compound BadListener... Generating docs for compound CancelListener... Generating docs for compound CancelProgressCallback... Generating docs for compound CSHA1... Generating docs for compound CubicHermiteSplineTest... Generating docs for compound CustomPair... Generating docs for compound Datum... Generating docs for compound DefaultArrayLengthSorter... Generating docs for compound DemuxDebugRWTest... Generating docs for compound DemuxHelpersTest... Generating docs for compound DemuxSolverTest... Generating docs for compound DemuxTest... Generating docs for nested compound DemuxTest::MSDPair... Generating docs for compound DigestedPeptideLessThan... Generating docs for compound EnumConstantNotPresentException... Generating docs for compound EnzymePtr_missedCleavages... Generating docs for compound EnzymePtr_specificity... Generating docs for compound EvenMS2Predicate... Generating docs for compound EvenPredicate... Generating docs for compound EvenRequester... Generating docs for compound Fifth... Generating docs for compound FifthHandler... Generating docs for compound FilterWrapper... Generating docs for compound First... Generating docs for compound FirstHandler... Generating docs for compound FTSieve... Generating docs for compound Goober... Generating docs for compound HasBinaryDataPredicate... Generating docs for compound IInterpolation... Generating docs for compound Is_T2D_Directory... Generating docs for compound IsDirectory... Generating docs for compound IsIMSData... Generating docs for compound isoChain... Generating docs for compound isotopeChain... Generating docs for compound IsRawData... Generating docs for compound IsRawFile... Generating docs for compound IsTDF... Generating docs for compound IsWiffFile... Generating docs for compound MatrixIOTest... Generating docs for compound MSDataWithSettableVersion... Generating docs for compound MSLevelSorter... Generating docs for compound MyBase... Generating docs for compound MyPred... Generating docs for compound MyWrapper... Generating docs for compound mzrtEqual... Generating docs for compound NestedHandler... Generating docs for compound OneMinusAbs... Generating docs for compound pairData... Generating docs for compound ParametrizedCosine... Generating docs for compound parentIon... Generating docs for compound precursorGroup... Generating docs for compound PrintAttribute... Generating docs for compound PrintEventHandler... Generating docs for compound RawMassDatum... Generating docs for compound Reader1... Generating docs for nested compound Reader1::Config... Generating docs for nested compound Reader1::ReaderConfig... Generating docs for compound Reader2... Generating docs for nested compound Reader2::Config... Generating docs for nested compound Reader2::ReaderConfig... Generating docs for compound ridgeLine... Generating docs for compound Root... Generating docs for compound RootHandler... Generating docs for compound rtimeMap... Generating docs for compound scoreChain... Generating docs for compound Second... Generating docs for compound SecondHandler... Generating docs for compound SelectedIndexPredicate... Generating docs for compound SetRetentionTime... Generating docs for compound SHA1_WORKSPACE_BLOCK... Generating docs for compound Simple... Generating docs for compound SimpleAnalyzer... Generating docs for compound SimpleProgressCallback... Generating docs for compound SpectrumPeakExtractorTest... Generating docs for compound TestAminoAcid... Generating docs for compound TestChargeStateCalculator... Generating docs for compound TestData... Generating docs for compound TestDatum... Generating docs for compound TestDeisotopeCalculator... Generating docs for compound TestDeisotoper... Generating docs for compound TestETDMassFilter... Generating docs for compound TestFormula... Generating docs for compound TestFragmentation... Generating docs for compound TestInfo... Generating docs for compound TestIterationListener... Generating docs for compound TestIterationListener_WithCancel... Generating docs for compound TestListener... Generating docs for compound TestMetadataFixer... Generating docs for compound TestModification... Generating docs for compound TestModifiedPeptide... Generating docs for compound TestMS2Denoise... Generating docs for compound TestOperator... Generating docs for compound TestOutputObserver... Generating docs for compound TestPair... Generating docs for compound TestPathmask... Generating docs for compound TestPeptide... Generating docs for compound TestReader... Generating docs for compound TestScanSummerCalculator... Generating docs for compound TestSpectrumInfo... Generating docs for compound TestThresholder... Generating docs for compound ThreadStatus... Generating docs for compound UserParamNameIs... Generating docs for compound WriteCVParam... Generating namespace index... Generating docs for namespace boost Generating docs for namespace boost::date_time Generating docs for namespace DemuxTypes Generating docs for namespace msclr Generating docs for compound msclr::pinned_gcroot... Generating docs for namespace pwiz Generating docs for compound pwiz::Version... Generating docs for namespace pwiz::analysis Generating docs for compound pwiz::analysis::ChromatogramList_Filter... Generating docs for nested compound pwiz::analysis::ChromatogramList_Filter::Predicate... Generating docs for compound pwiz::analysis::ChromatogramList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::ChromatogramList_LockmassRefiner... Generating docs for compound pwiz::analysis::ChromatogramList_SavitzkyGolaySmoother... Generating docs for compound pwiz::ana/<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp:92: warning: argument 'demuxWindows' from the argument list of pwiz::analysis::PrecursorMaskCodec::IdentifyOverlap has multiple @param documentation sections /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:37: warning: argument 'ppmError' of command @param is not found in the argument list of pwiz::analysis::SpectrumPeakExtractor::SpectrumPeakExtractor(const std::vector< double > &peakMzList, const pwiz::chemistry::MZTolerance &massError) /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:42: warning: The following parameter of pwiz::analysis::SpectrumPeakExtractor::SpectrumPeakExtractor(const std::vector< double > &peakMzList, const pwiz::chemistry::MZTolerance &massError) is not documented: parameter 'massError' lysis::ChromatogramList_XICGenerator... Generating docs for compound pwiz::analysis::ChromatogramListFactory... Generating docs for compound pwiz::analysis::ChromatogramListWrapper... Generating docs for compound pwiz::analysis::SavitzkyGolaySmoother... Generating docs for compound pwiz::analysis::CwtPeakDetector... Generating docs for compound pwiz::analysis::SpectrumDataFilter... Generating docs for compound pwiz::analysis::ChromatogramDataFilter... Generating docs for compound pwiz::analysis::ExtraZeroSamplesFilter... Generating docs for compound pwiz::analysis::LocalMaximumPeakDetector... Generating docs for compound pwiz::analysis::Peak... Generating docs for compound pwiz::analysis::PeakDetector... Generating docs for compound pwiz::analysis::Smoother... Generating docs for compound pwiz::analysis::WhittakerSmoother... Generating docs for compound pwiz::analysis::ZeroSampleFiller... Generating docs for compound pwiz::analysis::CubicHermiteSpline... Generating docs for compound pwiz::analysis::DemuxDebugReader... Generating docs for compound pwiz::analysis::DemuxDebugWriter... Generating docs for compound pwiz::analysis::DemuxSolver... Generating docs for compound pwiz::analysis::NNLSSolver... Generating docs for compound pwiz::analysis::IDemultiplexer... Generating docs for compound pwiz::analysis::IsoWindowHasher... Generating docs for compound pwiz::analysis::DemuxWindow... Generating docs for compound pwiz::analysis::IsolationWindow... Generating docs for compound pwiz::analysis::IPrecursorMaskCodec... Generating docs for compound pwiz::analysis::MatrixIO... Generating docs for compound pwiz::analysis::MSXDemultiplexer... Generating docs for nested compound pwiz::analysis::MSXDemultiplexer::Params... Generating docs for compound pwiz::analysis::OverlapDemultiplexer... Generating docs for nested compound pwiz::analysis::OverlapDemultiplexer::Params... Generating docs for compound pwiz::analysis::PrecursorMaskCodec... Generating docs for nested compound pwiz::analysis::PrecursorMaskCodec::DemuxBoundary... Generating docs for compound pwiz::analysis::SpectrumPeakExtractor... Generating docs for compound pwiz::analysis::MetadataReporter... Generating docs for compound pwiz::analysis::analyzer_strings< MetadataReporter >... Generating docs for compound pwiz::analysis::MSDataAnalyzer... Generating docs for nested compound pwiz::analysis::MSDataAnalyzer::DataInfo... Generating docs for compound pwiz::analysis::analyzer_strings... Generating docs for compound pwiz::analysis::MSDataAnalyzerContainer... Generating docs for compound pwiz::analysis::MSDataAnalyzerDriver... Generating docs for nested compound pwiz::analysis::MSDataAnalyzerDriver::ProgressCallback... Generating docs for compound pwiz::analysis::MSDataCache... Generating docs for nested compound pwiz::analysis::MSDataCache::Config... Generating docs for compound pwiz::analysis::PepxmlRecordReader... Generating docs for nested compound pwiz::analysis::PepxmlRecordReader::Config... Generating docs for nested compound pwiz::analysis::PepxmlRecordReader::record... Generating docs for compound pwiz::analysis::RegionAnalyzer... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::Config... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::SpectrumStats... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::Stats... Generating docs for compound pwiz::analysis::RegionSIC... Generating docs for nested compound pwiz::analysis::RegionSIC::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RegionSIC >... Generating docs for compound pwiz::analysis::RegionSlice... Generating docs for nested compound pwiz::analysis::RegionSlice::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RegionSlice >... Generating docs for compound pwiz::analysis::RegionTIC... Generating docs for nested compound pwiz::analysis::RegionTIC::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RegionTIC >... Generating docs for compound pwiz::analysis::RunSummary... Generating docs for nested compound pwiz::analysis::RunSummary::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RunSummary >... Generating docs for compound pwiz::analysis::SpectrumBinaryData... Generating docs for nested compound pwiz::analysis::SpectrumBinaryData::Config... Generating docs for compound pwiz::analysis::analyzer_strings< SpectrumBinaryData >... Generating docs for compound pwiz::analysis::SpectrumTable... Generating docs for nested compound pwiz::analysis::SpectrumTable::Config... Generating docs for compound pwiz::analysis::analyzer_strings< SpectrumTable >... Generating docs for compound pwiz::analysis::TabularConfig... Generating docs for compound pwiz::analysis::FeatureDetector... Generating docs for compound pwiz::analysis::FeatureDetectorPeakel... Generating docs for nested compound pwiz::analysis::FeatureDetectorPeakel::Config... Generating docs for compound pwiz::analysis::FeatureDetectorSimple... Generating docs for compound pwiz::analysis::FeatureModeler... Generating docs for compound pwiz::analysis::FeatureModeler_Gaussian... Generating docs for compound pwiz::analysis::MZRTField... Generating docs for compound pwiz::analysis::RTMatches_Any... Generating docs for compound pwiz::analysis::RTMatches_Contains... Generating docs for compound pwiz::analysis::RTMatches_IsContainedIn... Generating docs for compound pwiz::analysis::Noise... Generating docs for compound pwiz::analysis::NoiseCalculator... Generating docs for compound pwiz::analysis::NoiseCalculator_2Pass... Generating docs for nested compound pwiz::analysis::NoiseCalculator_2Pass::Config... Generating docs for compound pwiz::analysis::PeakelGrower... Generating docs for compound pwiz::analysis::PeakelGrower_Proximity... Generating docs for nested compound pwiz::analysis::PeakelGrower_Proximity::Config... Generating docs for compound pwiz::analysis::PeakelPicker... Generating docs for compound pwiz::analysis::PeakelPicker_Basic... Generating docs for nested compound pwiz::analysis::PeakelPicker_Basic::Config... Generating docs for compound pwiz::analysis::PeakExtractor... Generating docs for compound pwiz::analysis::PeakFamilyDetector... Generating docs for compound pwiz::analysis::PeakFamilyDetectorFT... Generating docs for nested compound pwiz::analysis::PeakFamilyDetectorFT::Config... Generating docs for nested compound pwiz::analysis::PeakFamilyDetectorFT::NoDataException... Generating docs for compound pwiz::analysis::PeakFinder... Generating docs for compound pwiz::analysis::PeakFinder_SNR... Generating docs for nested compound pwiz::analysis::PeakFinder_SNR::Config... Generating docs for compound pwiz::analysis::PeakFitter... Generating docs for compound pwiz::analysis::PeakFitter_Parabola... Generating docs for nested compound pwiz::analysis::PeakFitter_Parabola::Config... Generating docs for compound pwiz::analysis::ProteinList_DecoyGenerator... Generating docs for nested compound pwiz::analysis::ProteinList_DecoyGenerator::Predicate... Generating docs for compound pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Reversed... Generating docs for compound pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Shuffled... Generating docs for compound pwiz::analysis::ProteinList_Filter... Generating docs for nested compound pwiz::analysis::ProteinList_Filter::Predicate... Generating docs for compound pwiz::analysis::ProteinList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::ProteinList_FilterPredicate_IdSet... Generating docs for compound pwiz::analysis::ProteinListFactory... Generating docs for compound pwiz::analysis::MS2Deisotoper... Generating docs for nested compound pwiz::analysis::MS2Deisotoper::Config... Generating docs for compound pwiz::analysis::MS2NoiseFilter... Generating docs for nested compound pwiz::analysis::MS2NoiseFilter::Config... Generating docs for compound pwiz::analysis::PrecursorMassFilter... Generating docs for nested compound pwiz::analysis::PrecursorMassFilter::Config... Generating docs for compound pwiz::analysis::PrecursorRecalculator... Generating docs for nested compound pw/<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:56: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:56: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:57: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:61: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:63: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:65: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found iz::analysis::PrecursorRecalculator::PrecursorInfo... Generating docs for compound pwiz::analysis::PrecursorRecalculatorDefault... Generating docs for nested compound pwiz::analysis::PrecursorRecalculatorDefault::Config... Generating docs for compound pwiz::analysis::SpectrumList_3D... Generating docs for compound pwiz::analysis::SpectrumList_ChargeFromIsotope... Generating docs for compound pwiz::analysis::SpectrumList_ChargeStateCalculator... Generating docs for compound pwiz::analysis::SpectrumList_Demux... Generating docs for nested compound pwiz::analysis::SpectrumList_Demux::Params... Generating docs for compound pwiz::analysis::SpectrumList_Filter... Generating docs for nested compound pwiz::analysis::SpectrumList_Filter::Predicate... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_IdSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanEventSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_MSLevelSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ChargeStateSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_DefaultArrayLengthSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ActivationType... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_AnalyzerType... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_Polarity... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_MzPresent... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ThermoScanFilter... Generating docs for compound pwiz::analysis::SpectrumList_IonMobility... Generating docs for compound pwiz::analysis::SpectrumList_LockmassRefiner... Generating docs for compound pwiz::analysis::SpectrumList_MetadataFixer... Generating docs for compound pwiz::analysis::SpectrumList_MZRefiner... Generating docs for compound pwiz::analysis::SpectrumList_MZWindow... Generating docs for compound pwiz::analysis::SpectrumList_PeakFilter... Generating docs for compound pwiz::analysis::IsolationWindowFilter... Generating docs for compound pwiz::analysis::SpectrumList_PeakPicker... Generating docs for compound pwiz::analysis::NoVendorPeakPickingException... Generating docs for compound pwiz::analysis::SpectrumList_PrecursorRecalculator... Generating docs for compound pwiz::analysis::SpectrumList_PrecursorRefine... Generating docs for nested compound pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo... Generating docs for compound pwiz::analysis::SpectrumList_ScanSummer... Generating docs for compound pwiz::analysis::SpectrumList_Smoother... Generating docs for compound pwiz::analysis::SpectrumList_Sorter... Generating docs for nested compound pwiz::analysis::SpectrumList_Sorter::Predicate... Generating docs for compound pwiz::analysis::SpectrumList_SorterPredicate_ScanStartTime... Generating docs for compound pwiz::analysis::SpectrumList_TitleMaker... Generating docs for compound pwiz::analysis::SpectrumList_ZeroSamplesFilter... Generating docs for compound pwiz::analysis::SpectrumListFactory... Generating docs for compound pwiz::analysis::ThresholdFilter... Generating docs for compound pwiz::analysis::Version... Generating docs for namespace pwiz::chemistry Generating docs for compound pwiz::chemistry::MassAbundance... Generating docs for compound pwiz::chemistry::Formula... Generating docs for compound pwiz::chemistry::IsotopeCalculator... Generating docs for compound pwiz::chemistry::IsotopeEnvelopeEstimator... Generating docs for nested compound pwiz::chemistry::IsotopeEnvelopeEstimator::Config... Generating docs for compound pwiz::chemistry:/<>/pwiz/data/common/diff_std.hpp:126: warning: expected whitespace after \a command /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' :IsotopeTable... Generating docs for compound pwiz::chemistry::MZTolerance... Generating docs for namespace pwiz::chemistry::detail Generating docs for compound pwiz::chemistry::detail::Isotope... Generating docs for compound pwiz::chemistry::detail::Element... Generating docs for namespace pwiz::chemistry::Element Generating docs for namespace pwiz::chemistry::Element::Info Generating docs for compound pwiz::chemistry::Element::Info::Record... Generating docs for namespace pwiz::chemistry::Ion Generating docs for namespace pwiz::cv Generating docs for compound pwiz::cv::CV... Generating docs for compound pwiz::cv::CVTermInfo... Generating docs for namespace pwiz::data Generating docs for compound pwiz::data::BinaryIndexStream... Generating docs for compound pwiz::data::CVTranslator... Generating docs for compound pwiz::data::BaseDiffConfig... Generating docs for compound pwiz::data::Diff... Generating docs for compound pwiz::data::Index... Generating docs for nested compound pwiz::data::Index::Entry... Generating docs for compound pwiz::data::MemoryIndex... Generating docs for compound pwiz::data::Term... Generating docs for compound pwiz::data::OBO... Generating docs for compound pwiz::data::CVParam... Generating docs for compound pwiz::data::CVParamIs... Generating docs for compound pwiz::data::CVParamIsChildOf... Generating docs for compound pwiz::data::UserParam... Generating docs for compound pwiz::data::ParamContainer... Generating docs for compound pwiz::data::ParamGroup... Generating docs for compound pwiz::data::CalibrationParameters... Generating docs for compound pwiz::data::FrequencyData... Generating docs for compound pwiz::data::SampleDatum... Generating docs for namespace pwiz::data::diff_impl Generating docs for compound pwiz::data::diff_impl::HasID... Generating docs for compound pwiz::data::diff_impl::Same... Generating docs for compound pwiz::data::diff_impl::SameDeep... Generating docs for namespace pwiz::data::peakdata Generating docs for compound pwiz::data::peakdata::Peak... Generating docs for compound pwiz::data::peakdata::HandlerPeak... Generating docs for compound pwiz::data::peakdata::PeakFamily... Generating docs for compound pwiz::data::peakdata::Scan... Generating docs for compound pwiz::data::peakdata::Software... Generating docs for nested compound pwiz::data::peakdata::Software::Parameter... Generating docs for compound pwiz::data::peakdata::PeakData... Generating docs for compound pwiz::data::peakdata::Peakel... Generating docs for compound pwiz::data::peakdata::HandlerPeakel... Generating docs for compound pwiz::data::peakdata::Feature... Generating docs for compound pwiz::data::peakdata::HandlerFeature... Generating docs for compound pwiz::data::peakdata::FeatureFile... Generating docs for namespace pwiz::data::pepxml Generating docs for compound pwiz::data::pepxml::Specificity... Generating docs for compound pwiz::data::pepxml::SampleEnzyme... Generating docs for compound pwiz::data::pepxml::SearchDatabase... Generating docs for compound pwiz::data::pepxml::Q3RatioResult... Generating docs for compound pwiz::data::pepxml::RocDataPoint... Generating docs for compound pwiz::data::pepxml::ErrorPoint... Generating docs for compound pwiz::data::pepxml::DistributionPoint... Generating docs for compound pwiz::data::pepxml::MixtureModel... Generating docs for compound pwiz::data::pepxml::PeptideProphetSummary... Generating docs for compound pwiz::data::pepxml::PeptideProphetResult... Generating docs for compound pwiz::data::pepxml::AnalysisResult... Generating docs for compound pwiz::data::pepxml::AlternativeProtein... Generating docs for compound pwiz::data::pepxml::ModAminoAcidMass... Generating docs for compound pwiz::data::pepxml::ModificationInfo... Generating docs for compound pwiz::data::pepxml::Parameter... Generating docs for compound pwiz::data::pepxml::SearchScore... Generating docs for compound pwiz::data::pepxml::SearchHit... Generating docs for compound pwiz::data::pepxml::SearchResult... Generating docs for compound pwiz::data::pepxml::EnzymaticSearchConstraint... Generating /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' docs for compound pwiz::data::pepxml::AminoAcidModification... Generating docs for compound pwiz::data::pepxml::SearchSummary... Generating docs for compound pwiz::data::pepxml::AnalysisTimestamp... Generating docs for compound pwiz::data::pepxml::SpectrumQuery... Generating docs for compound pwiz::data::pepxml::MSMSRunSummary... Generating docs for compound pwiz::data::pepxml::AnalysisSummary... Generating docs for compound pwiz::data::pepxml::DataFilter... Generating docs for compound pwiz::data::pepxml::DatasetDerivation... Generating docs for compound pwiz::data::pepxml::MSMSPipelineAnalysis... Generating docs for compound pwiz::data::pepxml::Match... Generating docs for compound pwiz::data::pepxml::MatchData... Generating docs for namespace pwiz::data::SampleDatumConstant Generating docs for namespace pwiz::data::unimod Generating docs for namespace pwiz::frequency Generating docs for compound pwiz::frequency::FrequencyEstimator... Generating docs for compound pwiz::frequency::FrequencyEstimatorPhysicalModel... Generating docs for nested compound pwiz::frequency::FrequencyEstimatorPhysicalModel::Config... Generating docs for compound pwiz::frequency::FrequencyEstimatorSimple... Generating docs for compound pwiz::frequency::MagnitudeLorentzian... Generating docs for compound pwiz::frequency::ParameterEstimator... Generating docs for compound pwiz::frequency::ParametrizedFunction... Generating docs for nested compound pwiz::frequency::ParametrizedFunction::ErrorFunction... Generating docs for compound pwiz::frequency::PeakDetector... Generating docs for compound pwiz::frequency::PeakDetectorMatchedFilter... Generating docs for nested compound pwiz::frequency::PeakDetectorMatchedFilter::Config... Generating docs for nested compound pwiz::frequency::PeakDetectorMatchedFilter::Score... Generating docs for compound pwiz::frequency::PeakDetectorNaive... Generating docs for compound pwiz::frequency::TruncatedLorentzian... Generating docs for compound pwiz::frequency::TruncatedLorentzianEstimator... Generating docs for compound pwiz::frequency::TruncatedLorentzianParameters... Generating docs for namespace pwiz::frequency::DerivativeTest Generating docs for compound pwiz::frequency::DerivativeTest::VectorFunction... Generating docs for compound pwiz::frequency::DerivativeTest::ParametrizedFunctionSlice... Generating docs for compound pwiz::frequency::DerivativeTest::ParametrizedDerivativeSlice... Generating docs for compound pwiz::frequency::DerivativeTest::AdaptedErrorFunction... Generating docs for compound pwiz::frequency::DerivativeTest::AdaptedErrorDerivative... Generating docs for namespace pwiz::identdata Generating docs for compound pwiz::identdata::DefaultReaderList... Generating docs for compound pwiz::identdata::DelimReader... Generating docs for compound pwiz::identdata::DelimWriter... Generating docs for compound pwiz::identdata::DiffConfig... Generating docs for compound pwiz::identdata::Identifiable... Generating docs for compound pwiz::identdata::IdentifiableParamContainer... Generating docs for compound pwiz::identdata::BibliographicReference... Generating docs for compound pwiz::identdata::Contact... Generating docs for compound pwiz::identdata::Organization... Generating docs for compound pwiz::identdata::Person... Generating docs for compound pwiz::identdata::ContactRole... Generating docs for compound pwiz::identdata::Sample... Generating docs for compound pwiz::identdata::AnalysisSoftware... Generating docs for compound pwiz::identdata::Provider... Generating docs for compound pwiz::identdata::AnalysisSampleCollection... Generating docs for compound pwiz::identdata::SearchDatabase... Generating docs for compound pwiz::identdata::DBSequence... Generating docs for compound pwiz::identdata::Modification... Generating docs for compound pwiz::identdata::SubstitutionModification... Generating docs for compound pwiz::identdata::Peptide... Generating docs for compound pwiz::identdata::SearchModification... Generating docs for compound pwiz::identdata::Enzyme... Generating docs for compound pwiz::identdata::Enzymes... Generating docs for compound pwiz::identdata::Residue... Generating docs for compound pwiz::identdata::AmbiguousResidue... Generating docs for compound pwiz::identdata::MassTable... Generating docs for compound pwiz::identdata::Filter... Generating docs for compound pwiz::identdata::TranslationTable... Generating docs for compound pwiz::identdata::DatabaseTranslation... Generating docs for compound pwiz::identdata::SpectrumIdentificationProtocol... Generating docs for compound pwiz::identdata::Measure... Generating docs for compound pwiz::identdata::FragmentArray... Generating docs for compound pwiz::identdata::IonType... Generating docs for compound pwiz::identdata::PeptideEvidence... Generating docs for compound pwiz::identdata::SequenceCollection... Generating docs for compound pwiz::identdata::SpectrumIdentificationItem... Generating docs for compound pwiz::identdata::SpectraData... Generating docs for compound pwiz::identdata::SpectrumIdentificationResult... Generating docs for compound pwiz::identdata::SpectrumIdentificationList... Generating docs for compound pwiz::identdata::SpectrumIdentification... Generating docs for compound pwiz::identdata::ProteinDetectionProtocol... Generating docs for compound pwiz::identdata::PeptideHypothesis... Generating docs for compound pwiz::identdata::ProteinDetectionHypothesis... Generating docs for compound pwiz::identdata::ProteinAmbiguityGroup... Generating docs for compound pwiz::identdata::ProteinDetectionList... Generating docs for compound pwiz::identdata::ProteinDetection... Generating docs for compound pwiz::identdata::AnalysisCollection... Generating docs for compound pwiz::identdata::AnalysisProtocolCollection... Generating docs for compound pwiz::identdata::SourceFile... Generating docs for compound pwiz::identdata::Inputs... Generating docs for compound pwiz::identdata::AnalysisData... Generating docs for compound pwiz::identdata::DataCollection... Generating docs for compound pwiz::identdata::IdentData... Generating docs for compound pwiz::identdata::IdentDataFile... Generating docs for nested compound pwiz::identdata::IdentDataFile::WriteConfig... Generating docs for compound pwiz::identdata::CVMap... Generating docs for compound pwiz::identdata::RegexCVMap... Generating docs for compound pwiz::identdata::StringMatchCVMap... Generating docs for compound pwiz::identdata::CVIDMatchCVMap... Generating docs for compound pwiz::identdata::MascotReader... Generating docs for compound pwiz::identdata::id_p... Generating docs for compound pwiz::identdata::software_p... Generating docs for compound pwiz::identdata::sequence_p... Generating docs for compound pwiz::identdata::seq_p... Generating docs for compound pwiz::identdata::dbsequence_p... Generating docs for compound pwiz::identdata::organization_p... Generating docs for compound pwiz::identdata::person_p... Generating docs for compound pwiz::identdata::Pep2MzIdent... Generating docs for compound pwiz::identdata::Reader... Generating docs for nested compound pwiz::identdata::Reader::Config... Generating docs for compound pwiz::identdata::ReaderFail... Generating docs for compound pwiz::identdata::ReaderList... Generating docs for compound pwiz::identdata::Serializer_mzIdentML... Generating docs for nested compound pwiz::identdata::Serializer_mzIdentML::Config... Generating docs for compound pwiz::identdata::Serializer_pepXML... Generating docs for nested compound pwiz::identdata::Serializer_pepXML::Config... Generating docs for compound pwiz::identdata::PepXMLSpecificity... Generating docs for compound pwiz::identdata::Serializer_protXML... Generating docs for nested compound pwiz::identdata::Serializer_protXML::Config... Generating docs for compound pwiz::identdata::Serializer_Text... Generating docs for nested compound pwiz::identdata::Serializer_Text::Config... Generating docs for compound pwiz::identdata::TextWriter... Generating docs for compound pwiz::identdata::Version... Generating docs for namespace pwiz::identdata::examples Generating docs for namespace pwiz::identdata::IO Generating docs for namespace /<>/pwiz/data/msdata/LegacyAdapter.hpp:51: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/LegacyAdapter.hpp:94: warning: Unsupported xml/html tag found pwiz::identdata::References Generating docs for namespace pwiz::math Generating docs for compound pwiz::math::LinearLeastSquares... Generating docs for compound pwiz::math::LinearLeastSquares< LinearLeastSquaresType_LU >... Generating docs for compound pwiz::math::LinearLeastSquares< LinearLeastSquaresType_QR >... Generating docs for compound pwiz::math::LinearSolver... Generating docs for compound pwiz::math::LinearSolver< LinearSolverType_LU >... Generating docs for compound pwiz::math::LinearSolver< LinearSolverType_QR >... Generating docs for compound pwiz::math::OrderedPair... Generating docs for compound pwiz::math::OrderedPairContainerRef... Generating docs for compound pwiz::math::Parabola... Generating docs for compound pwiz::math::Stats... Generating docs for namespace pwiz::math::MatchedFilter Generating docs for compound pwiz::math::MatchedFilter::ProductSpace... Generating docs for compound pwiz::math::MatchedFilter::SampledData... Generating docs for compound pwiz::math::MatchedFilter::KernelTraitsBase... Generating docs for compound pwiz::math::MatchedFilter::KernelTraitsBase< Y(*)(X)>... Generating docs for compound pwiz::math::MatchedFilter::Correlation... Generating docs for compound pwiz::math::MatchedFilter::KernelTraits... Generating docs for nested compound pwiz::math::MatchedFilter::KernelTraits::Dummy... Generating docs for namespace pwiz::math::MatchedFilter::details Generating docs for namespace pwiz::math::types Generating docs for namespace pwiz::minimxml Generating docs for compound pwiz::minimxml::XMLWriter... Generating docs for nested compound pwiz::minimxml::XMLWriter::Attributes... Generating docs for nested compound pwiz::minimxml::XMLWriter::Config... Generating docs for nested compound pwiz::minimxml::XMLWriter::OutputObserver... Generating docs for compound pwiz::minimxml::basic_charcounter... Generating docs for nested compound pwiz::minimxml::basic_charcounter::category... Generating docs for namespace pwiz::minimxml::SAXParser Generating docs for compound pwiz::minimxml::SAXParser::saxstring... Generating docs for compound pwiz::minimxml::SAXParser::Handler... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Attributes... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Attributes::attribute... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Status... Generating docs for namespace pwiz::msdata Generating docs for compound pwiz::msdata::BinaryDataEncoder... Generating docs for nested compound pwiz::msdata::BinaryDataEncoder::Config... Generating docs for compound pwiz::msdata::ChromatogramList_mzML... Generating docs for compound pwiz::msdata::ChromatogramListBase... Generating docs for compound pwiz::msdata::Reader_mzML... Generating docs for compound pwiz::msdata::Reader_mzXML... Generating docs for compound pwiz::msdata::Reader_MGF... Generating docs for compound pwiz::msdata::Reader_MSn... Generating docs for compound pwiz::msdata::Reader_BTDX... Generating docs for compound pwiz::msdata::Reader_mz5... Generating docs for compound pwiz::msdata::DefaultReaderList... Generating docs for compound pwiz::msdata::DiffConfig... Generating docs for compound pwiz::msdata::Index_mzML... Generating docs for compound pwiz::msdata::SpectrumIdentityFromXML... Generating docs for compound pwiz::msdata::SpectrumIdentityFromMzXML... Generating docs for compound pwiz::msdata::LegacyAdapter_Instrument... Generating docs for compound pwiz::msdata::LegacyAdapter_Software... Generating docs for compound pwiz::msdata::MemoryMRUCache... Generating docs for compound pwiz::msdata::FileContent... Generating docs for compound pwiz::msdata::SourceFile... Generating docs for compound pwiz::msdata::Contact... Generating docs for compound pwiz::msdata::FileDescription... Generating docs for compound pwiz::msdata::Sample... Generating docs for compound pwiz::msdata::Component... Generating docs for compound pwiz::msdata::ComponentList... Generating docs for compound pwiz::msdata::Software... Generating docs for compound pwiz::msdata::Target./<>/pwiz/data/msdata/MSData.hpp:858: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/MSData.hpp:858: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/MSData.hpp:858: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found .. Generating docs for compound pwiz::msdata::ScanSettings... Generating docs for compound pwiz::msdata::InstrumentConfiguration... Generating docs for compound pwiz::msdata::ProcessingMethod... Generating docs for compound pwiz::msdata::DataProcessing... Generating docs for compound pwiz::msdata::IsolationWindow... Generating docs for compound pwiz::msdata::SelectedIon... Generating docs for compound pwiz::msdata::Activation... Generating docs for compound pwiz::msdata::Precursor... Generating docs for compound pwiz::msdata::Product... Generating docs for compound pwiz::msdata::ScanWindow... Generating docs for compound pwiz::msdata::Scan... Generating docs for compound pwiz::msdata::ScanList... Generating docs for compound pwiz::msdata::BinaryDataArray... Generating docs for compound pwiz::msdata::MZIntensityPair... Generating docs for compound pwiz::msdata::TimeIntensityPair... Generating docs for compound pwiz::msdata::SpectrumIdentity... Generating docs for compound pwiz::msdata::ChromatogramIdentity... Generating docs for compound pwiz::msdata::Spectrum... Generating docs for compound pwiz::msdata::Chromatogram... Generating docs for compound pwiz::msdata::IndexList... Generating docs for compound pwiz::msdata::SpectrumList... Generating docs for compound pwiz::msdata::SpectrumListSimple... Generating docs for compound pwiz::msdata::ChromatogramList... Generating docs for compound pwiz::msdata::ChromatogramListSimple... Generating docs for compound pwiz::msdata::Run... Generating docs for compound pwiz::msdata::MSData... Generating docs for compound pwiz::msdata::MSDataFile... Generating docs for nested compound pwiz::msdata::MSDataFile::WriteConfig... Generating docs for compound pwiz::msdata::MSDataMerger... Generating docs for compound pwiz::msdata::Reader... Generating docs for nested compound pwiz::msdata::Reader::Config... Generating docs for compound pwiz::msdata::ReaderFail... Generating docs for compound pwiz::msdata::ReaderList... Generating docs for compound pwiz::msdata::Serializer_MGF... Generating docs for compound pwiz::msdata::Serializer_MSn... Generating docs for compound pwiz::msdata::Serializer_mzML... Generating docs for nested compound pwiz::msdata::Serializer_mzML::Config... Generating docs for compound pwiz::msdata::Serializer_mzXML... Generating docs for nested compound pwiz::msdata::Serializer_mzXML::Config... Generating docs for compound pwiz::msdata::SHA1OutputObserver... Generating docs for compound pwiz::msdata::SpectrumInfo... Generating docs for nested compound pwiz::msdata::SpectrumInfo::PrecursorInfo... Generating docs for compound pwiz::msdata::SpectrumIterator... Generating docs for nested compound pwiz::msdata::SpectrumIterator::Config... Generating docs for nested compound pwiz::msdata::SpectrumIterator::Sieve... Generating docs for compound pwiz::msdata::SpectrumList_BTDX... Generating docs for compound pwiz::msdata::SpectrumList_MGF... Generating docs for compound pwiz::msdata::MSnHeader... Generating docs for compound pwiz::msdata::SpectrumList_MSn... Generating docs for compound pwiz::msdata::SpectrumList_mzML... Generating docs for compound pwiz::msdata::SpectrumList_mzXML... Generating docs for nested compound pwiz::msdata::SpectrumList_mzXML::index_not_found... Generating docs for compound pwiz::msdata::SpectrumListBase... Generating docs for compound pwiz::msdata::SpectrumListIonMobilityBase... Generating docs for compound pwiz::msdata::SpectrumListCache... Generating docs for nested compound pwiz::msdata::SpectrumListCache::CacheEntry... Generating docs for compound pwiz::msdata::SpectrumListWrapper... Generating docs for compound pwiz::msdata::SpectrumWorkerThreads... Generating docs for compound pwiz::msdata::TextWriter... Generating docs for compound pwiz::msdata::Version... Generating docs for compound pwiz::msdata::Reader_ABI... Generating docs for compound pwiz::msdata::Reader_ABI_T2D... Generating docs for compound pwiz::msdata::Reader_Agilent... Generating docs for compound pwiz::msdata::Reader_Bruker... Generating docs for compound pwiz::msdata::ExtendedReaderL/<>/pwiz/data/msdata/MSNumpress.hpp:81: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:82: warning: Found unknown command '@dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:84: warning: Found unknown command '@fixedPoint' /<>/pwiz/data/msdata/MSNumpress.hpp:99: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:118: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:119: warning: Found unknown command '@dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:131: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:147: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:148: warning: Found unknown command '@dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:161: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:173: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:174: warning: Found unknown command '@dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:185: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:210: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:211: warning: Found unknown command '@dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:226: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:237: warning: Found unknown command '@data' /<>/pwiz/data/msdata/MSNumpress.hpp:238: warning: Found unknown command '@dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:250: warning: Found unknown command '@data' /<>/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found ist... Generating docs for compound pwiz::msdata::Reader_Shimadzu... Generating docs for compound pwiz::msdata::Reader_Thermo... Generating docs for compound pwiz::msdata::Reader_UIMF... Generating docs for compound pwiz::msdata::Reader_UNIFI... Generating docs for compound pwiz::msdata::Reader_Waters... Generating docs for namespace pwiz::msdata::detail Generating docs for compound pwiz::msdata::detail::ChromatogramList_ABI... Generating docs for compound pwiz::msdata::detail::SpectrumList_ABI... Generating docs for compound pwiz::msdata::detail::SpectrumList_ABI_T2D... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Agilent... Generating docs for compound pwiz::msdata::detail::SpectrumList_Agilent... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Bruker... Generating docs for compound pwiz::msdata::detail::SpectrumList_Bruker... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Shimadzu... Generating docs for compound pwiz::msdata::detail::SpectrumList_Shimadzu... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Thermo... Generating docs for compound pwiz::msdata::detail::SpectrumList_Thermo... Generating docs for compound pwiz::msdata::detail::SpectrumList_UIMF... Generating docs for compound pwiz::msdata::detail::SpectrumList_UNIFI... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Waters... Generating docs for compound pwiz::msdata::detail::SpectrumList_Waters... Generating docs for nested compound pwiz::msdata::detail::SpectrumList_Waters::VendorOptions... Generating docs for namespace pwiz::msdata::detail::Bruker Generating docs for namespace pwiz::msdata::detail::Thermo Generating docs for namespace pwiz::msdata::examples Generating docs for namespace pwiz::msdata::id Generating docs for namespace pwiz::msdata::IO Generating docs for namespace pwiz::msdata::MSNumpress Generating docs for namespace pwiz::msdata::References Generating docs for namespace pwiz::peptideid Generating docs for compound pwiz::peptideid::PeptideID... Generating docs for nested compound pwiz::peptideid::PeptideID::Iterator... Generating docs for nested compound pwiz::peptideid::PeptideID::IteratorInternal... Generating docs for nested compound pwiz::peptideid::PeptideID::Location... Generating docs for nested compound pwiz::peptideid::PeptideID::Record... Generating docs for compound pwiz::peptideid::nativeID_less... Generating docs for compound pwiz::peptideid::location_less... Generating docs for compound pwiz::peptideid::FlatRecordBuilder... Generating docs for compound pwiz::peptideid::MSInspectRecordBuilder... Generating docs for compound pwiz::peptideid::PeptideID_flat... Generating docs for compound pwiz::peptideid::PeptideID_pepXml... Generating docs for compound pwiz::peptideid::PeptideIDMap... Generating docs for namespace pwiz::proteome Generating docs for compound pwiz::proteome::DefaultReaderList... Generating docs for compound pwiz::proteome::DiffConfig... Generating docs for compound pwiz::proteome::DigestedPeptide... Generating docs for compound pwiz::proteome::Digestion... Generating docs for nested compound pwiz::proteome::Digestion::Config... Generating docs for nested compound pwiz::proteome::Digestion::const_iterator... Generating docs for compound pwiz::proteome::Modification... Generating docs for compound pwiz::proteome::ModificationList... Generating docs for compound pwiz::proteome::ModificationMap... Generating docs for compound pwiz::proteome::Peptide... Generating docs for compound pwiz::proteome::Fragmentation... Generating docs for compound pwiz::proteome::ProteinListCache... Generating docs for compound pwiz::proteome::ProteinListWrapper... Generating docs for compound pwiz::proteome::Protein... Generating docs for compound pwiz::proteome::IndexList... Generating docs for compound pwiz::proteome::ProteinList... Generating docs for compound pwiz::proteome::ProteinListSimple... Generating docs for compound pwiz::proteome::ProteomeData... Generating docs for compound pwiz::proteome::ProteomeDataFile... Generating d/<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:355: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:355: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found ocs for nested compound pwiz::proteome::ProteomeDataFile::WriteConfig... Generating docs for compound pwiz::proteome::Reader... Generating docs for compound pwiz::proteome::ReaderFail... Generating docs for compound pwiz::proteome::ReaderList... Generating docs for compound pwiz::proteome::Reader_FASTA... Generating docs for nested compound pwiz::proteome::Reader_FASTA::Config... Generating docs for compound pwiz::proteome::Serializer_FASTA... Generating docs for nested compound pwiz::proteome::Serializer_FASTA::Config... Generating docs for compound pwiz::proteome::TextWriter... Generating docs for compound pwiz::proteome::Version... Generating docs for compound pwiz::proteome::IPIFASTADatabase... Generating docs for nested compound pwiz::proteome::IPIFASTADatabase::Record... Generating docs for namespace pwiz::proteome::AminoAcid Generating docs for namespace pwiz::proteome::AminoAcid::Info Generating docs for compound pwiz::proteome::AminoAcid::Info::Record... Generating docs for namespace pwiz::proteome::examples Generating docs for namespace pwiz::tradata Generating docs for compound pwiz::tradata::DefaultReaderList... Generating docs for compound pwiz::tradata::DiffConfig... Generating docs for compound pwiz::tradata::Reader... Generating docs for compound pwiz::tradata::ReaderFail... Generating docs for compound pwiz::tradata::ReaderList... Generating docs for compound pwiz::tradata::Serializer_traML... Generating docs for compound pwiz::tradata::TextWriter... Generating docs for compound pwiz::tradata::Contact... Generating docs for compound pwiz::tradata::Publication... Generating docs for compound pwiz::tradata::Software... Generating docs for compound pwiz::tradata::RetentionTime... Generating docs for compound pwiz::tradata::Prediction... Generating docs for compound pwiz::tradata::Evidence... Generating docs for compound pwiz::tradata::Validation... Generating docs for compound pwiz::tradata::Instrument... Generating docs for compound pwiz::tradata::Configuration... Generating docs for compound pwiz::tradata::Interpretation... Generating docs for compound pwiz::tradata::Protein... Generating docs for compound pwiz::tradata::Modification... Generating docs for compound pwiz::tradata::Peptide... Generating docs for compound pwiz::tradata::Compound... Generating docs for compound pwiz::tradata::Precursor... Generating docs for compound pwiz::tradata::Product... Generating docs for compound pwiz::tradata::Transition... Generating docs for compound pwiz::tradata::Target... Generating docs for compound pwiz::tradata::TargetList... Generating docs for compound pwiz::tradata::TraData... Generating docs for compound pwiz::tradata::TraDataFile... Generating docs for nested compound pwiz::tradata::TraDataFile::WriteConfig... Generating docs for compound pwiz::tradata::Version... Generating docs for namespace pwiz::tradata::examples Generating docs for namespace pwiz::tradata::IO Generating docs for namespace pwiz::tradata::References Generating docs for namespace pwiz::util Generating docs for compound pwiz::util::BinaryData... Generating docs for nested compound pwiz::util::BinaryData::const_iterator... Generating docs for nested compound pwiz::util::BinaryData::iterator... Generating docs for compound pwiz::util::CharIndexedVectorIterator... Generating docs for compound pwiz::util::CharIndexedVectorConstIterator... Generating docs for compound pwiz::util::CharIndexedVector... Generating docs for compound pwiz::util::ClickwrapPrompter... Generating docs for compound pwiz::util::Lock... Generating docs for compound pwiz::util::usage_exception... Generating docs for compound pwiz::util::user_error... Generating docs for compound pwiz::util::Image... Generating docs for nested compound pwiz::util::Image::Color... Generating docs for nested compound pwiz::util::Image::Point... Generating docs for compound pwiz::util::IntegerSet... Generating docs for nested compound pwiz::util::IntegerSet::Interval... Generating docs for nested compound pwiz::util::IntegerSet::Iterator... Generating docs for compound pwiz::util::Iteration/<>/pwiz/utility/findmf/base/base/cumsum.hpp:40: warning: The following parameter of ralab::base::cumsum(TIterator beg, TIterator end, std::vector< T > &res) is not documented: parameter 'end' /<>/pwiz/utility/findmf/base/base/cumsum.hpp:63: warning: The following parameter of ralab::base::cumsum(TIterator beg, TIterator end) is not documented: parameter 'end' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:58: warning: The following parameters of ralab::base::base::interpolate_linear(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:83: warning: The following parameters of ralab::base::base::interpolate_cosine(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0) are not documented: parameter 'endY' parameter 'endX' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:105: warning: The following parameters of ralab::base::base::interpolate_cubic(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:130: warning: The following parameters of ralab::base::base::interpolate_Hermite(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, double tension=0, double bias=0, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:199: warning: The following parameters of ralab::base::base::utilities::interpolateCubicHermite(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, TFunctor &functor, int start_index=0) are not documented: parameter 'begY' parameter 'endY' parameter 'begX' parameter 'endX' parameter 'start_index' /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:283: warning: The following parameters of ralab::base::base::utilities::interpolateLinearCosine(YInputIterator y_p, YInputIterator endY, XInputIterator x_p, XInputIterator endX, OutputIterator out_p, TFunctor &interpolator, int start_index=0) are not documented: parameter 'endY' parameter 'endX' /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:149: warning: The following parameter of ralab::base::base::utilities::HermiteInterpolate::HermiteInterpolate(TReal tension, TReal bias, TReal epsilon=std::numeric_limits< TReal >::epsilon()) is not documented: parameter 'epsilon' /<>/pwiz/utility/findmf/base/filter/filter.hpp:49: warning: The following parameters of ralab::base::filter::filter_sequence(TIterator dataBeg, TIterator dataEnd, TFilterIterator filterBeg, size_t fsize, TOutputIterator resBeg, bool circular=false, uint32_t sides=2) are not documented: parameter 'dataEnd' parameter 'fsize' /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp:102: warning: The following parameter of ralab::base::filter::getGaussian1DerFilterQuantile(std::vector< TReal > &gauss1d, TReal fwhm=20, TReal quantile=0.1) is not documented: parameter 'quantile' /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp:39: warning: The following parameters of ralab::base::filter::utilities::prepareData(TIterator dataBeg, TIterator dataEnd, size_t fsize, TContainer &res, bool mirror=false) are not documented: parameter 'dataBeg' parameter 'dataEnd' parameter 'fsize' /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp:81: warning: The following parameter of ralab::base::ms::LocalMinPeakArea::LocalMinPeakArea(TReal integwith, TReal threshold=.1) is not documented: parameter 'threshold' /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp:177: warning: The following parameter of ralab::base::ms::PeakPicker::PeakPicker(TReal resolution, std::pair< TReal, TReal > &massrange, TReal width=2., TReal intwidth=2., TReal intensitythreshold=10., bool area=true, uint32_t maxnumberofpeaks=0, double c2d=1e-5) is not documented: parameter 'intensitythreshold' /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp:49: warning: The following parameters of ralab::base::ms::SimplePicker::operator()(Tit beg, Tit end, Outit zerocrossings, size_t nzercross, std::ptrdiff_t lag=2) are not documented: parameter 'beg' parameter 'end' parameter 'zerocrossings' parameter 'lag' /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp:36: warning: Found unknown command '\given' /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp:83: warning: Found unknown command '\Assignment' /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp:96: warning: The following parameters of ralab::base::resample::Bucket1D::operator()(InputIterator beg, InputIterator end, std::vector< std::pair< std::size_t, std::size_t > > &bucketPairs) are not documented: parameter 'end' parameter 'bucketPairs' /<>/pwiz/utility/findmf/base/base/scale.hpp:77: warning: The following parameters of ralab::base::stats::scale(InputIterator begin, InputIterator end, std::pair< typename std::iterator_traits< InputIterator >::value_type, typename std::iterator_traits< InputIterator >::value_type > &scaled, bool center=true, bool scale=true) are not documented: parameter 'begin' parameter 'end' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' Listener... Generating docs for nested compound pwiz::util::IterationListener::UpdateMessage... Generating docs for compound pwiz::util::IterationListenerRegistry... Generating docs for compound pwiz::util::mru_list... Generating docs for compound pwiz::util::MSIHandler... Generating docs for nested compound pwiz::util::MSIHandler::Record... Generating docs for compound pwiz::util::once_flag_proxy... Generating docs for compound pwiz::util::random_access_compressed_ifstream... Generating docs for compound pwiz::util::SHA1SymmetricFilter... Generating docs for compound pwiz::util::SHA1Filter... Generating docs for compound pwiz::util::SHA1_ostream... Generating docs for compound pwiz::util::SHA1Calculator... Generating docs for compound pwiz::util::shared_map... Generating docs for compound pwiz::util::TabHandler... Generating docs for compound pwiz::util::DefaultTabHandler... Generating docs for compound pwiz::util::VectorTabHandler... Generating docs for compound pwiz::util::TabReader... Generating docs for compound pwiz::util::Timer... Generating docs for compound pwiz::util::TestPathPredicate... Generating docs for compound pwiz::util::ReaderTestConfig... Generating docs for compound pwiz::util::virtual_map... Generating docs for namespace pwiz::util::Base64 Generating docs for namespace pwiz::util::env Generating docs for namespace pwiz::vendor_api Generating docs for namespace pwiz::vendor_api::Bruker Generating docs for namespace ralab Generating docs for namespace ralab::base Generating docs for namespace ralab::base::base Generating docs for namespace ralab::base::base::utilities Generating docs for compound ralab::base::base::utilities::SeqPlus... Generating docs for compound ralab::base::base::utilities::SeqMinus... Generating docs for compound ralab::base::base::utilities::LinearInterpolate... Generating docs for compound ralab::base::base::utilities::CosineInterpolate... Generating docs for compound ralab::base::base::utilities::CubicInterpolate... Generating docs for compound ralab::base::base::utilities::HermiteInterpolate... Generating docs for namespace ralab::base::filter Generating docs for namespace ralab::base::filter::utilities Generating docs for compound ralab::base::filter::utilities::Gauss... Generating docs for compound ralab::base::filter::utilities::Gauss_1deriv... Generating docs for compound ralab::base::filter::utilities::Mexican_Hat... Generating docs for compound ralab::base::filter::utilities::Mexican_Hat2... Generating docs for namespace ralab::base::ms Generating docs for compound ralab::base::ms::SimplePeakArea... Generating docs for compound ralab::base::ms::LocalMinPeakArea... Generating docs for compound ralab::base::ms::PeakPicker... Generating docs for compound ralab::base::ms::SimplePicker... Generating docs for namespace ralab::base::resample Generating docs for compound ralab::base::resample::Bin1D... Generating docs for compound ralab::base::resample::Bucket1D... Generating docs for compound ralab::base::resample::Convert2Dense... Generating docs for compound ralab::base::resample::SquareRoot... Generating docs for compound ralab::base::resample::SamplingWith... Generating docs for compound ralab::base::resample::PPMCompFunctor... Generating docs for compound ralab::base::resample::DaCompFunctor... Generating docs for compound ralab::base::resample::FTMSCompFunctor... Generating docs for namespace ralab::base::resample::utilities Generating docs for compound ralab::base::resample::utilities::meanfunctor... Generating docs for namespace ralab::base::stats Generating docs for compound ralab::base::stats::NthPower... Generating docs for namespace ralab::base::utils Generating docs for namespace ralab::constants Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... lookup cache used 33731/65536 hits=341712 misses=37780 finished... rm -f doc/dox/html/jquery.js touch build-indep-stamp dh_testdir -i dh_testroot -i dh_installchangelogs -i install -d debian/libpwiz-doc/usr/share/doc/libpwiz-doc install -p -m0644 debian/changelog debian/libpwiz-doc/usr/share/doc/libpwiz-doc/changelog.Debian dh_installdocs -i install -p -m0644 debian/copyright debian/libpwiz-doc/usr/share/doc/libpwiz-doc/copyright install -d debian/libpwiz-doc/usr/share/doc-base/ install -p -m0644 debian/libpwiz-doc.doc-base debian/libpwiz-doc/usr/share/doc-base/libpwiz-doc.libpwiz-documentation dh_install -i cp --reflink=auto -a ./doc/dox/html debian/libpwiz-doc/usr/share/doc/libpwiz-doc/ dh_installman -i install -d debian/libpwiz-doc/usr/share/man/man7/ install -p -m0644 ./debian/libpwiz-doc.7 debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7 man-recode --to-code UTF-8 --suffix .dh-new debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7 mv debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7.dh-new debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7 chmod 0644 -- debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7 dh_compress -i cd debian/libpwiz-doc chmod a-x usr/share/doc/libpwiz-doc/changelog.Debian usr/share/man/man7/libpwiz-doc.7 gzip -9nf usr/share/doc/libpwiz-doc/changelog.Debian usr/share/man/man7/libpwiz-doc.7 cd '/<>' dh_fixperms -i find debian/libpwiz-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz-doc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_installdeb -i install -d debian/libpwiz-doc/DEBIAN dh_lintian -i dh_gencontrol -i echo misc:Depends= >> debian/libpwiz-doc.substvars echo misc:Pre-Depends= >> debian/libpwiz-doc.substvars dpkg-gencontrol -plibpwiz-doc -ldebian/changelog -Tdebian/libpwiz-doc.substvars -Pdebian/libpwiz-doc chmod 0644 -- debian/libpwiz-doc/DEBIAN/control chown 0:0 -- debian/libpwiz-doc/DEBIAN/control dh_md5sums -i cd debian/libpwiz-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libpwiz-doc/DEBIAN/md5sums chown 0:0 -- debian/libpwiz-doc/DEBIAN/md5sums dh_builddeb -i dpkg-deb --build debian/libpwiz-doc .. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libpwiz-doc (in debian/libpwiz-doc); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libpwiz-doc/DEBIAN/control, package libpwiz-doc, directory debian/libpwiz-doc pkgstripfiles: Truncating usr/share/doc/libpwiz-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package libpwiz-doc (to save build time) dpkg-deb: building package 'libpwiz-doc' in '../libpwiz-doc_3.0.18342-4build1_all.deb'. dpkg-genbuildinfo --build=binary -O../libpwiz_3.0.18342-4build1_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../libpwiz_3.0.18342-4build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-06-23T01:24:48Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libpwiz_3.0.18342-4build1_amd64.changes: ---------------------------------------- Format: 1.8 Date: Sat, 12 Dec 2020 13:07:53 +0100 Source: libpwiz Binary: libpwiz-dev libpwiz-doc libpwiz-tools libpwiz3 Built-For-Profiles: noudeb Architecture: amd64 all Version: 3.0.18342-4build1 Distribution: kinetic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: libpwiz-dev - library to perform proteomics data analyses (devel files) libpwiz-doc - set of programs to perform proteomics data analyses (doc) libpwiz-tools - ProteoWizard command line tools libpwiz3 - library to perform proteomics data analyses (runtime) Changes: libpwiz (3.0.18342-4build1) hirsute; urgency=medium . * No-change rebuild for boost soname change. 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Checksums-Md5: 8e10877133ba1bb363a8335d543136ee 5204284 libpwiz-dev_3.0.18342-4build1_amd64.deb 7bd6bdf4db8a02911041cefc7e1a45cc 3805076 libpwiz-doc_3.0.18342-4build1_all.deb 2301d418d0ab2a2ffc706c963b5a419d 110552 libpwiz-tools_3.0.18342-4build1_amd64.deb 8da645efedbf5db7a6369752bd90c537 2786366 libpwiz3_3.0.18342-4build1_amd64.deb Checksums-Sha1: 24ae4dcc53a38fe4842040355dc0e6aafea1bb17 5204284 libpwiz-dev_3.0.18342-4build1_amd64.deb 458ae4b46dd37c6b5e780ddaab72c8f700034de4 3805076 libpwiz-doc_3.0.18342-4build1_all.deb 7131684e1baa37146e18e94ee0b964234470a3e4 110552 libpwiz-tools_3.0.18342-4build1_amd64.deb 80cb1cbeb99ce44c86acf0706dbd77dd60875b76 2786366 libpwiz3_3.0.18342-4build1_amd64.deb Checksums-Sha256: 9b9a1deaa2170ddb29b8318b221cb6731ad4a73008a7389c4c759300b988e5d2 5204284 libpwiz-dev_3.0.18342-4build1_amd64.deb 9fc57090c7883236cd9c39cdf4b2a29f2b52e0d605e23eefc6f9fc67a9acf0d0 3805076 libpwiz-doc_3.0.18342-4build1_all.deb cc3851302526291edb3758921698c349d177dc5cf9e5af8dce20f95f887e17eb 110552 libpwiz-tools_3.0.18342-4build1_amd64.deb 0a235104bd034a3a59b305c56d673731c3fc681ce8f6f20356987279b625d271 2786366 libpwiz3_3.0.18342-4build1_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 23 Jun 2022 01:24:47 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu1), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.50.20220615-4ubuntu1), binutils-common (= 2.38.50.20220615-4ubuntu1), binutils-x86-64-linux-gnu (= 2.38.50.20220615-4ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), chrpath (= 0.16-2), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-3ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3build1), debconf (= 1.5.79ubuntu1), debhelper (= 13.7.1ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), docbook (= 4.5-10), docbook-to-man (= 1:2.0.0-45), doxygen (= 1.9.1-2ubuntu2), dpkg (= 1.21.8ubuntu1), dpkg-dev (= 1.21.8ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), fontconfig-config (= 2.13.1-4.4ubuntu1), fonts-dejavu-core (= 2.37-2build1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-3ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-3ubuntu1), gcc-11-base (= 11.3.0-3ubuntu1), gcc-12-base (= 12.1.0-2ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), icu-devtools (= 71.1-3), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-3ubuntu1), libatomic1 (= 12.1.0-2ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbinutils (= 2.38.50.20220615-4ubuntu1), libblkid1 (= 2.38-4ubuntu1), libboost-atomic1.74-dev (= 1.74.0-14ubuntu4), libboost-atomic1.74.0 (= 1.74.0-14ubuntu4), libboost-chrono-dev (= 1.74.0.3ubuntu7), libboost-chrono1.74-dev (= 1.74.0-14ubuntu4), libboost-chrono1.74.0 (= 1.74.0-14ubuntu4), libboost-date-time-dev (= 1.74.0.3ubuntu7), libboost-date-time1.74-dev (= 1.74.0-14ubuntu4), libboost-date-time1.74.0 (= 1.74.0-14ubuntu4), libboost-dev (= 1.74.0.3ubuntu7), libboost-filesystem-dev (= 1.74.0.3ubuntu7), libboost-filesystem1.74-dev (= 1.74.0-14ubuntu4), libboost-filesystem1.74.0 (= 1.74.0-14ubuntu4), libboost-iostreams-dev (= 1.74.0.3ubuntu7), libboost-iostreams1.74-dev (= 1.74.0-14ubuntu4), libboost-iostreams1.74.0 (= 1.74.0-14ubuntu4), libboost-program-options-dev (= 1.74.0.3ubuntu7), libboost-program-options1.74-dev (= 1.74.0-14ubuntu4), libboost-program-options1.74.0 (= 1.74.0-14ubuntu4), libboost-regex-dev (= 1.74.0.3ubuntu7), libboost-regex1.74-dev (= 1.74.0-14ubuntu4), libboost-regex1.74.0 (= 1.74.0-14ubuntu4), libboost-serialization1.74-dev (= 1.74.0-14ubuntu4), libboost-serialization1.74.0 (= 1.74.0-14ubuntu4), libboost-system-dev (= 1.74.0.3ubuntu7), libboost-system1.74-dev (= 1.74.0-14ubuntu4), libboost-system1.74.0 (= 1.74.0-14ubuntu4), libboost-thread-dev (= 1.74.0.3ubuntu7), libboost-thread1.74-dev (= 1.74.0-14ubuntu4), libboost-thread1.74.0 (= 1.74.0-14ubuntu4), libboost-tools-dev (= 1.74.0.3ubuntu7), libboost1.74-dev (= 1.74.0-14ubuntu4), libboost1.74-tools-dev (= 1.74.0-14ubuntu4), libbrotli-dev (= 1.0.9-2build6), libbrotli1 (= 1.0.9-2build6), libbsd0 (= 0.11.6-1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcap-ng0 (= 0.7.9-4), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-2ubuntu1), libclang-cpp14 (= 1:14.0.5-1), libclang1-14 (= 1:14.0.5-1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38.50.20220615-4ubuntu1), libctf0 (= 2.38.50.20220615-4ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.9), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.7.1ubuntu1), libdeflate-dev (= 1.10-2), libdeflate0 (= 1.10-2), libdpkg-perl (= 1.21.8ubuntu1), libdw1 (= 0.187-1), libedit2 (= 3.1-20210910-1build1), libeigen3-dev (= 3.4.0-2ubuntu2), libelf1 (= 0.187-1), libexpat1 (= 2.4.8-1), libexpat1-dev (= 2.4.8-1), libffi8 (= 3.4.2-4), libfftw3-bin (= 3.3.8-2ubuntu8), libfftw3-dev (= 3.3.8-2ubuntu8), libfftw3-double3 (= 3.3.8-2ubuntu8), libfftw3-long3 (= 3.3.8-2ubuntu8), libfftw3-quad3 (= 3.3.8-2ubuntu8), libfftw3-single3 (= 3.3.8-2ubuntu8), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontconfig-dev (= 2.13.1-4.4ubuntu1), libfontconfig1 (= 2.13.1-4.4ubuntu1), libfreetype-dev (= 2.12.1+dfsg-3), libfreetype6 (= 2.12.1+dfsg-3), libfreetype6-dev (= 2.12.1+dfsg-3), libgcc-11-dev (= 11.3.0-3ubuntu1), libgcc-s1 (= 12.1.0-2ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgd-dev (= 2.3.0-2ubuntu2), libgd3 (= 2.3.0-2ubuntu2), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libglib2.0-0 (= 2.72.2-2), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgomp1 (= 12.1.0-2ubuntu1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.50.20220615-4ubuntu1), libgssapi-krb5-2 (= 1.19.2-2), libice-dev (= 2:1.0.10-1build2), libice6 (= 2:1.0.10-1build2), libicu-dev (= 71.1-3), libicu71 (= 71.1-3), libisl23 (= 0.24-2build1), libitm1 (= 12.1.0-2ubuntu1), libjbig-dev (= 2.1-3.1build3), libjbig0 (= 2.1-3.1build3), libjpeg-dev (= 8c-2ubuntu10), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg-turbo8-dev (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjpeg8-dev (= 8c-2ubuntu10), libjs-jquery (= 3.6.0+dfsg+~3.5.13-1), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), libllvm14 (= 1:14.0.5-1), liblsan0 (= 12.1.0-2ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma-dev (= 5.2.5-2.1), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-1build1), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libosp5 (= 1.5.2-13ubuntu3), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.6-1), libpng-dev (= 1.6.37-5), libpng16-16 (= 1.6.37-5), libpthread-stubs0-dev (= 0.4-1build2), libquadmath0 (= 12.1.0-2ubuntu1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsm-dev (= 2:1.2.3-1build2), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.38-4ubuntu1), libssl3 (= 3.0.3-5ubuntu3), libstdc++-11-dev (= 11.3.0-3ubuntu1), libstdc++6 (= 12.1.0-2ubuntu1), libsub-override-perl (= 0.09-3), libsystemd0 (= 249.11-0ubuntu4), libtiff-dev (= 4.4.0~rc1-1), libtiff5 (= 4.4.0~rc1-1), libtiffxx5 (= 4.4.0~rc1-1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-3ubuntu1), libubsan1 (= 12.1.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu4), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libvpx-dev (= 1.11.0-2ubuntu2), libvpx7 (= 1.11.0-2ubuntu2), libwebp7 (= 1.2.2-2), libx11-6 (= 2:1.7.5-1), libx11-data (= 2:1.7.5-1), libx11-dev (= 2:1.7.5-1), libxapian30 (= 1.4.18-4), libxau-dev (= 1:1.0.9-1build5), libxau6 (= 1:1.0.9-1build5), libxcb1 (= 1.14-3ubuntu3), libxcb1-dev (= 1.14-3ubuntu3), libxdmcp-dev (= 1:1.1.3-0ubuntu5), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxml2 (= 2.9.14+dfsg-1), libxpm-dev (= 1:3.5.12-1build2), libxpm4 (= 1:3.5.12-1build2), libxt-dev (= 1:1.2.1-1), libxt6 (= 1:1.2.1-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.15.0-27.28), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 27), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), opensp (= 1.5.2-13ubuntu3), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), pkg-config (= 0.29.2-1ubuntu3), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sgml-base (= 1.30), sgml-data (= 2.0.11+nmu1), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), ucf (= 3.0043), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), uuid-dev (= 2.38-4ubuntu1), x11-common (= 1:7.7+23ubuntu2), x11proto-dev (= 2022.1-1), xml-core (= 0.18+nmu1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu9), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607774873" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libpwiz-dev_3.0.18342-4build1_amd64.deb --------------------------------------- new Debian package, version 2.0. size 5204284 bytes: control archive=10511 bytes. 1239 bytes, 27 lines control 35855 bytes, 353 lines md5sums Package: libpwiz-dev Source: libpwiz Version: 3.0.18342-4build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 43557 Depends: libpwiz3 (= 3.0.18342-4build1) Suggests: libpwiz-doc Section: libdevel Priority: optional Homepage: http://proteowizard.sourceforge.net/downloads.shtml Description: library to perform proteomics data analyses (devel files) The libpwiz library from the ProteoWizard project provides a modular and extensible set of open-source, cross-platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations. . The primary goal of ProteoWizard is to eliminate the existing barriers to proteomic software development so that researchers can focus on the development of new analytic approaches, rather than having to dedicate significant resources to mundane (if important) tasks, like reading data files. . 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12:07 ./usr/share/doc/libpwiz-dev/ -rw-r--r-- root/root 1279 2020-01-17 14:45 ./usr/share/doc/libpwiz-dev/README.Debian lrwxrwxrwx root/root 0 2020-12-12 12:07 ./usr/share/doc/libpwiz-dev/changelog.Debian.gz -> ../libpwiz3/changelog.Debian.gz -rw-r--r-- root/root 46931 2020-09-27 08:55 ./usr/share/doc/libpwiz-dev/copyright libpwiz-doc_3.0.18342-4build1_all.deb ------------------------------------- new Debian package, version 2.0. size 3805076 bytes: control archive=73013 bytes. 1265 bytes, 27 lines control 345672 bytes, 3163 lines md5sums Package: libpwiz-doc Source: libpwiz Version: 3.0.18342-4build1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 77680 Depends: libjs-jquery Section: doc Priority: optional Homepage: http://proteowizard.sourceforge.net/downloads.shtml Description: set of programs to perform proteomics data analyses (doc) The libpwiz library from the ProteoWizard project provides a modular and extensible set of open-source, cross-platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations. . The primary goal of ProteoWizard is to eliminate the existing barriers to proteomic software development so that researchers can focus on the development of new analytic approaches, rather than having to dedicate significant resources to mundane (if important) tasks, like reading data files. . 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110552 bytes: control archive=1226 bytes. 1484 bytes, 29 lines control 542 bytes, 9 lines md5sums Package: libpwiz-tools Source: libpwiz Version: 3.0.18342-4build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 423 Depends: libboost-filesystem1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libpwiz3 (= 3.0.18342-4build1), libstdc++6 (>= 11) Suggests: libpwiz-doc Section: science Priority: optional Homepage: http://proteowizard.sourceforge.net/downloads.shtml Description: ProteoWizard command line tools The libpwiz library from the ProteoWizard project provides a modular and extensible set of open-source, cross-platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations. . The primary goal of ProteoWizard is to eliminate the existing barriers to proteomic software development so that researchers can focus on the development of new analytic approaches, rather than having to dedicate significant resources to mundane (if important) tasks, like reading data files. . This package ships command line tools that include _idconvert_ (conversion of MS identifications) and _msconvert_ (conversion of MS raw data files from/to any supported format). drwxr-xr-x root/root 0 2020-12-12 12:07 ./ drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/ drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/bin/ -rwxr-xr-x root/root 108912 2020-12-12 12:07 ./usr/bin/idconvert -rwxr-xr-x root/root 22856 2020-12-12 12:07 ./usr/bin/mscat -rwxr-xr-x root/root 178552 2020-12-12 12:07 ./usr/bin/msconvert -rwxr-xr-x root/root 55632 2020-12-12 12:07 ./usr/bin/txt2mzml drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/share/ drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/share/doc/libpwiz-tools/ lrwxrwxrwx root/root 0 2020-12-12 12:07 ./usr/share/doc/libpwiz-tools/changelog.Debian.gz -> ../libpwiz3/changelog.Debian.gz -rw-r--r-- root/root 46931 2020-09-27 08:55 ./usr/share/doc/libpwiz-tools/copyright drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/share/man/man1/ -rw-r--r-- root/root 1003 2020-12-12 12:07 ./usr/share/man/man1/idconvert.1.gz -rw-r--r-- root/root 539 2020-12-12 12:07 ./usr/share/man/man1/mscat.1.gz -rw-r--r-- root/root 1597 2020-12-12 12:07 ./usr/share/man/man1/msconvert.1.gz -rw-r--r-- root/root 593 2020-12-12 12:07 ./usr/share/man/man1/txt2mzml.1.gz libpwiz3_3.0.18342-4build1_amd64.deb ------------------------------------ new Debian package, version 2.0. size 2786366 bytes: control archive=34376 bytes. 1431 bytes, 25 lines control 1104 bytes, 13 lines md5sums 35 bytes, 1 lines shlibs 416507 bytes, 5081 lines symbols 74 bytes, 2 lines triggers Package: libpwiz3 Source: libpwiz Version: 3.0.18342-4build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 8794 Depends: libboost-chrono1.74.0 (>= 1.74.0), libboost-filesystem1.74.0 (>= 1.74.0), libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libboost-serialization1.74.0 (>= 1.74.0), libboost-thread1.74.0 (>= 1.74.0), libc6 (>= 2.34), libgcc-s1 (>= 4.0), libstdc++6 (>= 11) Suggests: libpwiz-doc Section: libs Priority: optional Homepage: http://proteowizard.sourceforge.net/downloads.shtml Description: library to perform proteomics data analyses (runtime) The libpwiz library from the ProteoWizard project provides a modular and extensible set of open-source, cross-platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations. . The primary goal of ProteoWizard is to eliminate the existing barriers to proteomic software development so that researchers can focus on the development of new analytic approaches, rather than having to dedicate significant resources to mundane (if important) tasks, like reading data files. drwxr-xr-x root/root 0 2020-12-12 12:07 ./ drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/ drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/lib/ lrwxrwxrwx root/root 0 2020-12-12 12:07 ./usr/lib/libpwiz.so.3 -> libpwiz.so.3.0.0 -rw-r--r-- root/root 8487584 2020-12-12 12:07 ./usr/lib/libpwiz.so.3.0.0 drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/share/ drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/share/doc/libpwiz3/ -rw-r--r-- root/root 1383 2020-12-12 12:07 ./usr/share/doc/libpwiz3/changelog.Debian.gz -rw-r--r-- root/root 46931 2020-09-27 08:55 ./usr/share/doc/libpwiz3/copyright drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/share/doc/libpwiz3/example-files/ -rw-r--r-- root/root 2710 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/hello_analyzer.cpp -rw-r--r-- root/root 4112 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/hello_analyzer_2.cpp -rw-r--r-- root/root 2306 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/hello_msdata.cpp -rw-r--r-- root/root 6226 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/mscat.cpp -rw-r--r-- root/root 5133 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/txt2mzml.cpp -rw-r--r-- root/root 3467 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/write_example_files.cpp -rw-r--r-- root/root 1670 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/write_mzid_example_files.cpp -rw-r--r-- root/root 1486 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/write_proteome_example_files.cpp -rw-r--r-- root/root 1827 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/write_traml_example_files.cpp drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-12 12:07 ./usr/share/man/man3/ -rw-r--r-- root/root 1503 2020-12-12 12:07 ./usr/share/man/man3/libpwiz.3.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 4701860 Build-Time: 3797 Distribution: kinetic Host Architecture: amd64 Install-Time: 27 Job: libpwiz_3.0.18342-4build1.dsc Machine Architecture: amd64 Package: libpwiz Package-Time: 3825 Source-Version: 3.0.18342-4build1 Space: 4701860 Status: successful Version: 3.0.18342-4build1 -------------------------------------------------------------------------------- Finished at 2022-06-23T01:24:48Z Build needed 01:03:45, 4701860k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24028854 Scanning for processes to kill in build PACKAGEBUILD-24028854