https://launchpad.net/ubuntu/+archive/test-rebuild-20221215-lunar-glibc-2.37/+build/25092441 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-011 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:20:15 UTC 2022 ppc64le Buildd toolchain package versions: launchpad-buildd_225~602~ubuntu20.04.1 python3-lpbuildd_225~602~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 4 Jan 19:04:11 ntpdate[1935]: adjust time server 10.211.37.1 offset 0.001282 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-25092441 --image-type chroot /home/buildd/filecache-default/ed25cb74ebdf957e8c5d9aefaa42d03092c4f62f Creating target for build PACKAGEBUILD-25092441 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-25092441 Starting target for build PACKAGEBUILD-25092441 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-25092441 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/glibc/ubuntu lunar main' 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu lunar main' 'deb http://ftpmaster.internal/ubuntu lunar main universe' Overriding sources.list in build-PACKAGEBUILD-25092441 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-25092441 Adding trusted keys to build-PACKAGEBUILD-25092441 pub rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC] Key fingerprint = 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid Launchpad Toolchain builds RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-25092441 Updating target for build PACKAGEBUILD-25092441 Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/glibc/ubuntu lunar InRelease [17.5 kB] Get:2 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu lunar InRelease [23.8 kB] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/glibc/ubuntu lunar/main ppc64el Packages [9236 B] Get:5 http://ftpmaster.internal/ubuntu lunar/main ppc64el Packages [1340 kB] Get:6 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/glibc/ubuntu lunar/main Translation-en [2120 B] Get:7 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu lunar/main ppc64el Packages [5800 B] Get:8 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu lunar/main Translation-en [3632 B] Get:9 http://ftpmaster.internal/ubuntu lunar/main Translation-en [511 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/universe ppc64el Packages [14.1 MB] Get:11 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5873 kB] Fetched 22.2 MB in 8s (2872 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libjansson4 libperl5.36 perl-modules-5.36 The following packages will be upgraded: binutils binutils-common binutils-powerpc64le-linux-gnu ca-certificates cpp-12 dash g++-12 gcc-12 gcc-12-base libapparmor1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libctf-nobfd0 libctf0 libgcc-12-dev libgcc-s1 libgomp1 libitm1 libkeyutils1 libkmod2 liblsan0 liblz4-1 libmpc3 libquadmath0 libssl3 libstdc++-12-dev libstdc++6 libtsan2 libubsan1 lto-disabled-list openssl perl perl-base 41 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 76.8 MB of archives. After this operation, 50.1 MB of additional disk space will be used. Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/glibc/ubuntu lunar/main ppc64el libc6-dev ppc64el 2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1 [2059 kB] Get:2 http://ftpmaster.internal/ubuntu lunar/main ppc64el dash ppc64el 0.5.11+git20210903+057cd650a4ed-9ubuntu1 [105 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main ppc64el perl-modules-5.36 all 5.36.0-4ubuntu2 [2984 kB] Get:4 http://ftpmaster.internal/ubuntu lunar/main ppc64el libperl5.36 ppc64el 5.36.0-4ubuntu2 [4854 kB] Get:5 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/glibc/ubuntu lunar/main ppc64el libc-dev-bin ppc64el 2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1 [21.0 kB] Get:6 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/glibc/ubuntu lunar/main ppc64el libc6 ppc64el 2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1 [3181 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main ppc64el perl ppc64el 5.36.0-4ubuntu2 [235 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main ppc64el perl-base ppc64el 5.36.0-4ubuntu2 [1855 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main ppc64el libcc1-0 ppc64el 12.2.0-10ubuntu1 [48.9 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main ppc64el libctf0 ppc64el 2.39.50.20221224-1ubuntu1 [109 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main ppc64el libctf-nobfd0 ppc64el 2.39.50.20221224-1ubuntu1 [109 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main ppc64el libjansson4 ppc64el 2.14-2 [40.0 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.39.50.20221224-1ubuntu1 [2445 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main ppc64el libbinutils ppc64el 2.39.50.20221224-1ubuntu1 [726 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main ppc64el binutils-common ppc64el 2.39.50.20221224-1ubuntu1 [225 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main ppc64el binutils ppc64el 2.39.50.20221224-1ubuntu1 [3116 B] Get:17 http://ftpmaster.internal/ubuntu lunar/main ppc64el gcc-12-base ppc64el 12.2.0-10ubuntu1 [19.6 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgcc-s1 ppc64el 12.2.0-10ubuntu1 [34.0 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgomp1 ppc64el 12.2.0-10ubuntu1 [139 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main ppc64el libitm1 ppc64el 12.2.0-10ubuntu1 [32.5 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main ppc64el libatomic1 ppc64el 12.2.0-10ubuntu1 [10.6 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main ppc64el libasan8 ppc64el 12.2.0-10ubuntu1 [2452 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main ppc64el liblsan0 ppc64el 12.2.0-10ubuntu1 [1082 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main ppc64el libtsan2 ppc64el 12.2.0-10ubuntu1 [2567 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main ppc64el libubsan1 ppc64el 12.2.0-10ubuntu1 [992 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main ppc64el libquadmath0 ppc64el 12.2.0-10ubuntu1 [155 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main ppc64el g++-12 ppc64el 12.2.0-10ubuntu1 [11.4 MB] Get:28 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/glibc/ubuntu lunar/main ppc64el libc-bin ppc64el 2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1 [742 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main ppc64el libstdc++-12-dev ppc64el 12.2.0-10ubuntu1 [2289 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgcc-12-dev ppc64el 12.2.0-10ubuntu1 [1513 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main ppc64el gcc-12 ppc64el 12.2.0-10ubuntu1 [19.8 MB] Get:32 http://ftpmaster.internal/ubuntu lunar/main ppc64el cpp-12 ppc64el 12.2.0-10ubuntu1 [10.0 MB] Get:33 http://ftpmaster.internal/ubuntu lunar/main ppc64el libstdc++6 ppc64el 12.2.0-10ubuntu1 [787 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/main ppc64el libmpc3 ppc64el 1.3.1-1 [61.2 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main ppc64el libaudit-common all 1:3.0.7-1ubuntu3 [4864 B] Get:36 http://ftpmaster.internal/ubuntu lunar/main ppc64el libaudit1 ppc64el 1:3.0.7-1ubuntu3 [50.6 kB] Get:37 http://ftpmaster.internal/ubuntu lunar/main ppc64el liblz4-1 ppc64el 1.9.4-1 [104 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main ppc64el libssl3 ppc64el 3.0.5-2ubuntu2 [2127 kB] Get:39 http://ftpmaster.internal/ubuntu lunar/main ppc64el openssl ppc64el 3.0.5-2ubuntu2 [1194 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main ppc64el ca-certificates all 20211016ubuntu1 [141 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main ppc64el libapparmor1 ppc64el 3.0.8-1ubuntu1 [41.1 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main ppc64el libkeyutils1 ppc64el 1.6.3-2 [10.5 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main ppc64el libkmod2 ppc64el 30+20220905-1ubuntu1 [59.8 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main ppc64el lto-disabled-list all 37 [12.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 76.8 MB in 5s (14.5 MB/s) (Reading database ... 13577 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1_ppc64el.deb ... Unpacking dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) over (0.5.11+git20210903+057cd650a4ed-8ubuntu1) ... Setting up dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) ... (Reading database ... 13577 files and directories currently installed.) Preparing to unpack .../perl_5.36.0-4ubuntu2_ppc64el.deb ... Unpacking perl (5.36.0-4ubuntu2) over (5.34.0-5ubuntu1) ... Selecting previously unselected package perl-modules-5.36. Preparing to unpack .../perl-modules-5.36_5.36.0-4ubuntu2_all.deb ... Unpacking perl-modules-5.36 (5.36.0-4ubuntu2) ... Selecting previously unselected package libperl5.36:ppc64el. Preparing to unpack .../libperl5.36_5.36.0-4ubuntu2_ppc64el.deb ... Unpacking libperl5.36:ppc64el (5.36.0-4ubuntu2) ... Preparing to unpack .../perl-base_5.36.0-4ubuntu2_ppc64el.deb ... Unpacking perl-base (5.36.0-4ubuntu2) over (5.34.0-5ubuntu1) ... Setting up perl-base (5.36.0-4ubuntu2) ... (Reading database ... 15503 files and directories currently installed.) Preparing to unpack .../00-libc6-dev_2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1) over (2.36-0ubuntu4) ... Preparing to unpack .../01-libc-dev-bin_2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1_ppc64el.deb ... Unpacking libc-dev-bin (2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1) over (2.36-0ubuntu4) ... Preparing to unpack .../02-libcc1-0_12.2.0-10ubuntu1_ppc64el.deb ... Unpacking libcc1-0:ppc64el (12.2.0-10ubuntu1) over (12.2.0-9ubuntu1) ... Preparing to unpack .../03-libctf0_2.39.50.20221224-1ubuntu1_ppc64el.deb ... Unpacking libctf0:ppc64el (2.39.50.20221224-1ubuntu1) over (2.39-8ubuntu2) ... Preparing to unpack .../04-libctf-nobfd0_2.39.50.20221224-1ubuntu1_ppc64el.deb ... Unpacking libctf-nobfd0:ppc64el (2.39.50.20221224-1ubuntu1) over (2.39-8ubuntu2) ... 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Setting up libc6:ppc64el (2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1) ... (Reading database ... 15513 files and directories currently installed.) Preparing to unpack .../libc-bin_2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1_ppc64el.deb ... Unpacking libc-bin (2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1) over (2.36-0ubuntu4) ... Setting up libc-bin (2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1) ... (Reading database ... 15513 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a3.0.7-1ubuntu3_all.deb ... Unpacking libaudit-common (1:3.0.7-1ubuntu3) over (1:3.0.7-1ubuntu2) ... Setting up libaudit-common (1:3.0.7-1ubuntu3) ... (Reading database ... 15513 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.0.7-1ubuntu3_ppc64el.deb ... Unpacking libaudit1:ppc64el (1:3.0.7-1ubuntu3) over (1:3.0.7-1ubuntu2) ... Setting up libaudit1:ppc64el (1:3.0.7-1ubuntu3) ... (Reading database ... 15513 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.4-1_ppc64el.deb ... Unpacking liblz4-1:ppc64el (1.9.4-1) over (1.9.3-2build2) ... Setting up liblz4-1:ppc64el (1.9.4-1) ... (Reading database ... 15513 files and directories currently installed.) Preparing to unpack .../0-libssl3_3.0.5-2ubuntu2_ppc64el.deb ... Unpacking libssl3:ppc64el (3.0.5-2ubuntu2) over (3.0.5-2ubuntu1) ... Preparing to unpack .../1-openssl_3.0.5-2ubuntu2_ppc64el.deb ... Unpacking openssl (3.0.5-2ubuntu2) over (3.0.5-2ubuntu1) ... Preparing to unpack .../2-ca-certificates_20211016ubuntu1_all.deb ... Unpacking ca-certificates (20211016ubuntu1) over (20211016) ... Preparing to unpack .../3-libapparmor1_3.0.8-1ubuntu1_ppc64el.deb ... Unpacking libapparmor1:ppc64el (3.0.8-1ubuntu1) over (3.0.7-1ubuntu4) ... Preparing to unpack .../4-libkeyutils1_1.6.3-2_ppc64el.deb ... Unpacking libkeyutils1:ppc64el (1.6.3-2) over (1.6.3-1) ... 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Setting up libtsan2:ppc64el (12.2.0-10ubuntu1) ... Setting up libbinutils:ppc64el (2.39.50.20221224-1ubuntu1) ... Setting up libc-dev-bin (2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1) ... Setting up openssl (3.0.5-2ubuntu2) ... Setting up libcc1-0:ppc64el (12.2.0-10ubuntu1) ... Setting up libperl5.36:ppc64el (5.36.0-4ubuntu2) ... Setting up liblsan0:ppc64el (12.2.0-10ubuntu1) ... Setting up libitm1:ppc64el (12.2.0-10ubuntu1) ... Setting up libkmod2:ppc64el (30+20220905-1ubuntu1) ... Setting up libctf0:ppc64el (2.39.50.20221224-1ubuntu1) ... Setting up cpp-12 (12.2.0-10ubuntu1) ... Setting up ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 0 added, 3 removed; done. Setting up perl (5.36.0-4ubuntu2) ... Setting up libgcc-12-dev:ppc64el (12.2.0-10ubuntu1) ... Setting up libc6-dev:ppc64el (2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1) ... Setting up binutils-powerpc64le-linux-gnu (2.39.50.20221224-1ubuntu1) ... Setting up libstdc++-12-dev:ppc64el (12.2.0-10ubuntu1) ... Setting up binutils (2.39.50.20221224-1ubuntu1) ... Setting up gcc-12 (12.2.0-10ubuntu1) ... Setting up g++-12 (12.2.0-10ubuntu1) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1) ... Processing triggers for ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-25092441 ppc64el lunar -c chroot:build-PACKAGEBUILD-25092441 --arch=ppc64el --dist=lunar --nolog ivar_1.3.1+dfsg-7.dsc Initiating build PACKAGEBUILD-25092441 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:20:15 UTC 2022 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-ppc64el-011.buildd +==============================================================================+ | ivar 1.3.1+dfsg-7 (ppc64el) Wed, 04 Jan 2023 19:04:39 +0000 | +==============================================================================+ Package: ivar Version: 1.3.1+dfsg-7 Source Version: 1.3.1+dfsg-7 Distribution: lunar Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-25092441/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/ivar-GIM9lD/resolver-62KTGE' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ivar_1.3.1+dfsg-7.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/ivar-GIM9lD/ivar-1.3.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/ivar-GIM9lD' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libhts-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libhts-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [377 B] Get:5 copy:/<>/apt_archive ./ Packages [458 B] Fetched 1792 B in 0s (145 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu71 libldap-2.5-0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu71 libldap-2.5-0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 28.4 MB of archives. After this operation, 95.7 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [674 B] Get:2 http://ftpmaster.internal/ubuntu lunar/main ppc64el libelf1 ppc64el 0.188-1 [61.0 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main ppc64el libicu71 ppc64el 71.1-3ubuntu1 [10.9 MB] Get:4 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.1 [820 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main ppc64el bsdextrautils ppc64el 2.38.1-4ubuntu1 [76.4 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main ppc64el libmagic-mgc ppc64el 1:5.41-4 [257 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main ppc64el libmagic1 ppc64el 1:5.41-4 [103 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main ppc64el file ppc64el 1:5.41-4 [22.6 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main ppc64el gettext-base ppc64el 0.21-10 [41.8 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main ppc64el libuchardet0 ppc64el 0.0.7-1build2 [80.4 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main ppc64el groff-base ppc64el 1.22.4-9 [1004 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main ppc64el libnghttp2-14 ppc64el 1.50.0-1 [88.8 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpipeline1 ppc64el 1.5.7-1 [25.8 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpsl5 ppc64el 0.21.0-1.2build2 [60.3 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main ppc64el man-db ppc64el 2.11.1-1 [1257 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main ppc64el m4 ppc64el 1.4.19-1 [275 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main ppc64el autoconf all 2.71-2 [338 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main ppc64el autotools-dev all 20220109.1 [44.9 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main ppc64el automake all 1:1.16.5-1.3 [558 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main ppc64el autopoint all 0.21-10 [421 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main ppc64el libtool all 2.4.7-5 [166 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsub-override-perl all 0.09-4 [8706 B] Get:26 http://ftpmaster.internal/ubuntu lunar/main ppc64el libfile-stripnondeterminism-perl all 1.13.0-2 [18.2 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main ppc64el dh-strip-nondeterminism all 1.13.0-2 [5308 B] Get:28 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdw1 ppc64el 0.188-1 [282 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main ppc64el debugedit ppc64el 1:5.0-5 [51.1 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main ppc64el dwz ppc64el 0.15-1 [139 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main ppc64el gettext ppc64el 0.21-10 [971 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/main ppc64el debhelper all 13.10.1ubuntu1 [924 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main ppc64el libbrotli1 ppc64el 1.0.9-2build7 [369 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg-6ubuntu2 [22.8 kB] Get:37 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg-6ubuntu2 [69.2 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main ppc64el libldap-2.5-0 ppc64el 2.5.13+dfsg-1ubuntu1 [217 kB] Get:39 http://ftpmaster.internal/ubuntu lunar/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build4 [65.5 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main ppc64el libssh-4 ppc64el 0.10.4-2 [235 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main ppc64el libcurl3-gnutls ppc64el 7.86.0-2 [358 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main ppc64el libcurl4-gnutls-dev ppc64el 7.86.0-2 [456 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdeflate0 ppc64el 1.14-1 [53.8 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdeflate-dev ppc64el 1.14-1 [49.2 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libhtscodecs2 ppc64el 1.3.0-4 [103 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libhts3 ppc64el 1.16+ds-3 [529 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main ppc64el liblzma-dev ppc64el 5.2.9-0.0 [178 kB] Get:48 http://ftpmaster.internal/ubuntu lunar/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-4.1ubuntu1 [175 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libhts-dev ppc64el 1.16+ds-3 [6021 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.4 MB in 7s (4259 kB/s) Selecting previously unselected package libelf1:ppc64el. (Reading database ... 15510 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.188-1_ppc64el.deb ... Unpacking libelf1:ppc64el (0.188-1) ... Selecting previously unselected package libicu71:ppc64el. Preparing to unpack .../01-libicu71_71.1-3ubuntu1_ppc64el.deb ... Unpacking libicu71:ppc64el (71.1-3ubuntu1) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1.1_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.14+dfsg-1.1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../03-bsdextrautils_2.38.1-4ubuntu1_ppc64el.deb ... Unpacking bsdextrautils (2.38.1-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.41-4_ppc64el.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../05-libmagic1_1%3a5.41-4_ppc64el.deb ... 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Unpacking zlib1g-dev:ppc64el (1:1.2.11.dfsg-4.1ubuntu1) ... Selecting previously unselected package libhts-dev:ppc64el. Preparing to unpack .../47-libhts-dev_1.16+ds-3_ppc64el.deb ... Unpacking libhts-dev:ppc64el (1.16+ds-3) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../48-sbuild-build-depends-main-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libhtscodecs2:ppc64el (1.3.0-4) ... Setting up libpipeline1:ppc64el (1.5.7-1) ... Setting up libicu71:ppc64el (71.1-3ubuntu1) ... Setting up libpsl5:ppc64el (0.21.0-1.2build2) ... Setting up bsdextrautils (2.38.1-4ubuntu1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.10.1ubuntu1) ... Setting up libbrotli1:ppc64el (1.0.9-2build7) ... Setting up libnghttp2-14:ppc64el (1.50.0-1) ... Setting up libmagic1:ppc64el (1:5.41-4) ... Setting up libdeflate0:ppc64el (1.14-1) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-1) ... Setting up file (1:5.41-4) ... Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg-6ubuntu2) ... Setting up autotools-dev (20220109.1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build4) ... Setting up autopoint (0.21-10) ... Setting up libsasl2-2:ppc64el (2.1.28+dfsg-6ubuntu2) ... Setting up libssh-4:ppc64el (0.10.4-2) ... Setting up autoconf (2.71-2) ... Setting up liblzma-dev:ppc64el (5.2.9-0.0) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-4.1ubuntu1) ... Setting up libuchardet0:ppc64el (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libdeflate-dev:ppc64el (1.14-1) ... Setting up libelf1:ppc64el (0.188-1) ... Setting up libxml2:ppc64el (2.9.14+dfsg-1.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-2) ... Setting up libdw1:ppc64el (0.188-1) ... Setting up gettext (0.21-10) ... Setting up libtool (2.4.7-5) ... Setting up libldap-2.5-0:ppc64el (2.5.13+dfsg-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.0-2) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-9) ... Setting up debugedit (1:5.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:ppc64el (7.86.0-2) ... Setting up libcurl4-gnutls-dev (7.86.0-2) ... Setting up man-db (2.11.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libhts3:ppc64el (1.16+ds-3) ... Setting up libhts-dev:ppc64el (1.16+ds-3) ... Setting up debhelper (13.10.1ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:20:15 UTC 2022 ppc64el (ppc64le) Toolchain package versions: binutils_2.39.50.20221224-1ubuntu1 dpkg-dev_1.21.11ubuntu2 g++-12_12.2.0-10ubuntu1 gcc-12_12.2.0-10ubuntu1 libc6-dev_2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1 libstdc++-12-dev_12.2.0-10ubuntu1 libstdc++6_12.2.0-10ubuntu1 linux-libc-dev_5.19.0-21.21 Package versions: adduser_3.121ubuntu1 advancecomp_2.4-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2-1ubuntu2 binutils_2.39.50.20221224-1ubuntu1 binutils-common_2.39.50.20221224-1ubuntu1 binutils-powerpc64le-linux-gnu_2.39.50.20221224-1ubuntu1 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016ubuntu1 coreutils_8.32-4.1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-10ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dpkg_1.21.11ubuntu2 dpkg-dev_1.21.11ubuntu2 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1ubuntu1 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-10ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-10ubuntu1 gcc-12-base_12.2.0-10ubuntu1 gettext_0.21-10 gettext-base_0.21-10 gpg_2.2.40-1ubuntu1 gpg-agent_2.2.40-1ubuntu1 gpgconf_2.2.40-1ubuntu1 gpgv_2.2.40-1ubuntu1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-2 libapparmor1_3.0.8-1ubuntu1 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-10ubuntu1 libassuan0_2.5.5-5 libatomic1_12.2.0-10ubuntu1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1ubuntu3 libaudit1_1:3.0.7-1ubuntu3 libbinutils_2.39.50.20221224-1ubuntu1 libblkid1_2.38.1-4ubuntu1 libbrotli1_1.0.9-2build7 libbz2-1.0_1.0.8-5build1 libc-bin_2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1 libc-dev-bin_2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1 libc6_2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1 libc6-dev_2.37~~snapshot-20221213.0.g5dcd2d0ad0-0ubuntu1~ppa1 libcap-ng0_0.8.3-1build1 libcap2_1:2.44-1build3 libcc1-0_12.2.0-10ubuntu1 libcom-err2_1.46.6~rc1-1ubuntu1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libcryptsetup12_2:2.5.0-6ubuntu3 libctf-nobfd0_2.39.50.20221224-1ubuntu1 libctf0_2.39.50.20221224-1ubuntu1 libcurl3-gnutls_7.86.0-2 libcurl4-gnutls-dev_7.86.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.10.1ubuntu1 libdeflate-dev_1.14-1 libdeflate0_1.14-1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.11ubuntu2 libdw1_0.188-1 libelf1_0.188-1 libext2fs2_1.46.6~rc1-1ubuntu1 libfakeroot_1.30.1-1ubuntu1 libfdisk1_2.38.1-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.0-2 libgcc-12-dev_12.2.0-10ubuntu1 libgcc-s1_12.2.0-10ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1ubuntu1 libgnutls30_3.7.7-2ubuntu2 libgomp1_12.2.0-10ubuntu1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libhts-dev_1.16+ds-3 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libicu71_71.1-3ubuntu1 libidn2-0_2.3.3-1build1 libip4tc2_1.8.7-1ubuntu7 libisl23_0.25-1 libitm1_12.2.0-10ubuntu1 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ivar Binary: ivar, ivar-doc Architecture: any all Version: 1.3.1+dfsg-7 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/andersen-lab/ivar Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/ivar Vcs-Git: https://salsa.debian.org/med-team/ivar.git Testsuite: autopkgtest Testsuite-Triggers: samtools Build-Depends: debhelper-compat (= 13), libhts-dev Package-List: ivar deb science optional arch=any ivar-doc deb doc optional arch=all Checksums-Sha1: 0618c6cb558643a035fef9579d83f75d42504980 630344 ivar_1.3.1+dfsg.orig.tar.xz c4df6bccddd8cb119b6d264d825097b25fa7351d 45912 ivar_1.3.1+dfsg-7.debian.tar.xz Checksums-Sha256: 1c506993b93b2f6b2fec7328e726bfb91a99a9d36c4b9e0bb174383143a2b192 630344 ivar_1.3.1+dfsg.orig.tar.xz 1b0042caa2ea053c2c345a5da13586ecddb0a2e18c6b3d6403a68d866f631390 45912 ivar_1.3.1+dfsg-7.debian.tar.xz Files: 073c189f9294476b494704928099f71f 630344 ivar_1.3.1+dfsg.orig.tar.xz 76bb18a9d09a34e18cab0fc5ad734e38 45912 ivar_1.3.1+dfsg-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmM+nacRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH8Hw//Zyd1sU1DHFFzJnI+1KZtXh1rjkCNWdNd aqsU1ZQ4LW2Er8SzcHrX+rldAnZ/gMP2FwBePNTkMnznaz60MVaB2a4Vc/jWEZ6o 5vfk9gua31/yHhxPBRkq56vFAB41B2+/xebveD/g1VJA3v4YMXhA4IWc1ooCaGUR XcMpCmYZSb8fCyWfjmy0rAeYsx3RsAlcHhjIpxS2hzhjlOL7egjVaW7TLuJzyv/G 7W2r1uXvt5v3ZlOP9/ytx6cpD5/vSCCmxnZbmaErM1JXHk+XIe6JVd6AIuuGc+Sf AdKHOnZsw/VHvmWZ4+iMFUUjAGbwZODQXZmg8o0rBVr1cW7l4khISC5KEwQPivHv jZJSL1WAm1M8N7nqK8DB3URIa49n4kf2/8dsoFVrNit1X7NVTFBppm1wC6Y4dQBG EajHo8zUi8XuJIbU0V76/qdkZUALkENC3rYTPpKXs+xoTXg4FZj+0zyJ0F+9BgoP 8+MoFEooZ//Ij+Joqhyt9Cjka2f1Kznjwoqg1hvaZgpvTpR5e0i1fD4+h8Mxehfm idcdhh0OCB9RpiVFxw4a1yc2FnsqVTfSkgWiaTLtAmoxTm9rH4je7NyEzs7v+L+Z FGBVPCss0GaarvaC80b5A/rIqfJVk8lE5LH3ZAF10fS91zoK0isAR6rPXGESpI53 3nYoqD8aRvM= =s0x5 -----END PGP SIGNATURE----- gpgv: Signature made Thu Oct 6 09:19:35 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ivar_1.3.1+dfsg-7.dsc: no acceptable signature found dpkg-source: info: extracting ivar in /<> dpkg-source: info: unpacking ivar_1.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking ivar_1.3.1+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix-warning.patch dpkg-source: info: applying forward-build-options.patch dpkg-source: info: applying gcc-11.patch dpkg-source: info: applying gcc-11_2.patch dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying gcc-12.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-25092441 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-25092441 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-25092441 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.3.1+dfsg-7 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f data/db/test_ref.fa.fai data/test.gap.fa data/test.gap.qual.txt data/test.indel.tsv data/test.masked_primer_indices.txt data/test.trimmed.masked.bam data/test.trimmed.masked.bam.bai data/test.trimmed.sorted.bam.bai data/test.unmapped.sorted.bam.bai make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:12: installing './compile' configure.ac:58: installing './config.guess' configure.ac:58: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=powerpc64le-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gawk... (cached) mawk checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for main in -lhts... no checking for main in -lpthread... no checking for main in -lz... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking build system type... powerpc64le-unknown-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking for GNU libc compatible malloc... no checking for GNU libc compatible realloc... no checking for memmove... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o ivar.o ivar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o alignment.o alignment.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -msecure-plt -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccAmqh1H.s Using built-in specs. Using built-in specs. Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -msecure-plt -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/cc8fLQPM.s warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: COLLECT_GCC=g++ #include <...> search starts here: . .. /usr/include/c++/12 OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -msecure-plt -quiet -dumpbase suffix_tree.cpp -dumpbase-extCOLLECT_GCC=g++ .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccIzrALp.s OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, alignment.cpp -msecure-plt -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccj9RNcz.s GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/12 /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/12 /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include Compiler executable checksum: End of search list. d4e3758b244705220d1d1339ca1afb49 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/12 /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: d4e3758b244705220d1d1339ca1afb49 Compiler executable checksum: d4e3758b244705220d1d13Compiler executable checksum: d4e3758b244705220d1d1339ca1afb49 39ca1afb49 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o alignment.o /tmp/ccj9RNcz.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'alignment.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -msecure-plt -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccvC6LVL.s GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/12 /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: d4e3758b244705220d1d1339ca1afb49 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o ivar.o /tmp/ccAmqh1H.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'ivar.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -msecure-plt -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccCa3XRu.s GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/12 /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: d4e3758b244705220d1d1339ca1afb49 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o suffix_tree.o /tmp/ccIzrALp.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o call_consensus_pileup.o /tmp/cc8fLQPM.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'suffix_tree.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -msecure-plt -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccZMAvYD.s GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/12 /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: d4e3758b244705220d1d1339ca1afb49 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'call_consensus_pileup.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -msecure-plt -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccw46ZjR.s GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/12 /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: d4e3758b244705220d1d1339ca1afb49 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o remove_reads_from_amplicon.o /tmp/ccCa3XRu.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'remove_reads_from_amplicon.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -msecure-plt -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccBzaLje.s GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/12 /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: d4e3758b244705220d1d1339ca1afb49 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o trim_primer_quality.o /tmp/ccvC6LVL.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'trim_primer_quality.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -msecure-plt -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccv8H10Y.s GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/12 /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: d4e3758b244705220d1d1339ca1afb49 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o call_variants.o /tmp/ccZMAvYD.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'call_variants.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -msecure-plt -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/cceNbFMU.s GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/12 /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: d4e3758b244705220d1d1339ca1afb49 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o allele_functions.o /tmp/ccBzaLje.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o get_masked_amplicons.o /tmp/ccv8H10Y.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'allele_functions.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -msecure-plt -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccMwoPxc.s GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/12 /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'get_masked_amplicons.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp Compiler executable checksum: d4e3758b244705220d1d1339ca1afb49 Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -msecure-plt -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccrq3mh7.s GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/12 /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: d4e3758b244705220d1d1339ca1afb49 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o primer_bed.o /tmp/ccw46ZjR.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'primer_bed.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mcpu=power9' /usr/lib/gcc/powerpc64le-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -msecure-plt -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccuAoOdU.s GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../include/powerpc64-linux-gnu/c++/12" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/12 /usr/include/powerpc64le-linux-gnu/c++/12 /usr/include/c++/12/backward /usr/lib/gcc/powerpc64le-linux-gnu/12/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 12.2.0-10ubuntu1) version 12.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP warning: MPC header version 1.2.1 differs from library version 1.3.1. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: d4e3758b244705220d1d1339ca1afb49 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o get_common_variants.o /tmp/cceNbFMU.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'get_common_variants.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o interval_tree.o /tmp/ccuAoOdU.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'interval_tree.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o ref_seq.o /tmp/ccrq3mh7.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'ref_seq.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o parse_gff.o /tmp/ccMwoPxc.s GNU assembler version 2.39.50 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.39.50.20221224 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'parse_gff.' g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/powerpc64le-linux-gnu/12/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 12.2.0-10ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-12-7X2M11/gcc-12-12.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Ubuntu 12.2.0-10ubuntu1) MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/12/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'ivar.' /usr/lib/gcc/powerpc64le-linux-gnu/12/collect2 -plugin /usr/lib/gcc/powerpc64le-linux-gnu/12/liblto_plugin.so -plugin-opt=/usr/lib/gcc/powerpc64le-linux-gnu/12/lto-wrapper -plugin-opt=-fresolution=/tmp/ccyxGnJX.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -V -m elf64lppc --hash-style=gnu --as-needed -dynamic-linker /lib64/ld64.so.2 -pie -z now -z relro -o ivar /usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/Scrt1.o /usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/crti.o /usr/lib/gcc/powerpc64le-linux-gnu/12/crtbeginS.o -L/usr/lib/gcc/powerpc64le-linux-gnu/12 -L/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu -L/usr/lib/gcc/powerpc64le-linux-gnu/12/../../../../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/powerpc64le-linux-gnu/12/../../.. -Bsymbolic-functions -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/powerpc64le-linux-gnu/12/crtendS.o /usr/lib/gcc/powerpc64le-linux-gnu/12/../../../powerpc64le-linux-gnu/crtn.o GNU ld (GNU Binutils for Ubuntu) 2.39.50.20221224 Supported emulations: elf64lppc elf32lppc elf32lppclinux elf32lppcsim elf64ppc elf32ppc elf32ppclinux elf32ppcsim COLLECT_GCC_OPTIONS='-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'ivar.' make[3]: Leaving directory '/<>/src' Making all in tests make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test --no-parallel make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 make[2]: Entering directory '/<>' Making check in src make[3]: Entering directory '/<>/src' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src' Making check in tests make[3]: Entering directory '/<>/tests' make check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search make[4]: Entering directory '/<>/tests' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_primer_trim.o test_primer_trim.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/trim_primer_quality.o ../src/trim_primer_quality.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/primer_bed.o ../src/primer_bed.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/interval_tree.o ../src/interval_tree.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_primer_trim test_primer_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_trim.o test_trim.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_trim test_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o check_quality_trim.o check_quality_trim.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_quality_trim check_quality_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_call_consensus_from_plup.o test_call_consensus_from_plup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/call_consensus_pileup.o ../src/call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/allele_functions.o ../src/allele_functions.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_consensus test_call_consensus_from_plup.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_allele_depth.o test_allele_depth.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_allele_depth test_allele_depth.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_consensus_threshold.o test_consensus_threshold.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_consensus_threshold test_consensus_threshold.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_consensus_min_depth.o test_consensus_min_depth.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_consensus_min_depth test_consensus_min_depth.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_consensus_seq_id.o test_consensus_seq_id.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_consensus_seq_id test_consensus_seq_id.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_primer_bed.o test_primer_bed.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_primer_bed test_primer_bed.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_getmasked.o test_getmasked.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/get_masked_amplicons.o ../src/get_masked_amplicons.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_getmasked test_getmasked.o ../src/get_masked_amplicons.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_removereads.o test_removereads.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/remove_reads_from_amplicon.o ../src/remove_reads_from_amplicon.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_removereads test_removereads.o ../src/remove_reads_from_amplicon.o ../src/primer_bed.o ../src/trim_primer_quality.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_variants.o test_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/call_variants.o ../src/call_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/parse_gff.o ../src/parse_gff.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/ref_seq.o ../src/ref_seq.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_variants test_variants.o ../src/call_variants.o ../src/allele_functions.o ../src/parse_gff.o ../src/ref_seq.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_common_variants.o test_common_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/get_common_variants.o ../src/get_common_variants.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_common_variants test_common_variants.o ../src/get_common_variants.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_unpaired_trim.o test_unpaired_trim.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_unpaired_trim test_unpaired_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_primer_trim_edge_cases.o test_primer_trim_edge_cases.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_primer_trim_edge_cases test_primer_trim_edge_cases.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_isize_trim.o test_isize_trim.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_isize_trim test_isize_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_interval_tree.o test_interval_tree.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_interval_tree test_interval_tree.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_amplicon_search.o test_amplicon_search.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_amplicon_search test_amplicon_search.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread make[4]: Leaving directory '/<>/tests' make check-TESTS make[4]: Entering directory '/<>/tests' make[5]: Entering directory '/<>/tests' PASS: check_primer_trim PASS: check_trim PASS: check_quality_trim PASS: check_consensus PASS: check_allele_depth PASS: check_consensus_threshold PASS: check_consensus_min_depth PASS: check_consensus_seq_id PASS: check_primer_bed PASS: check_getmasked PASS: check_removereads PASS: check_variants PASS: check_common_variants FAIL: check_unpaired_trim PASS: check_primer_trim_edge_cases PASS: check_isize_trim PASS: check_interval_tree PASS: check_amplicon_search ====================================== ivar 1.3.1: tests/test-suite.log ====================================== # TOTAL: 18 # PASS: 17 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 FAIL: check_unpaired_trim ========================= Found 8 primers in BED file test_72_280_12:1:0_11:0:0_2 Forward Reverse Cigar flag didn't match for test_72_280_12:1:0_11:0:0_2 ! Expected 2 Got 0 Cigar length didn't match for test_72_280_12:1:0_11:0:0_2 ! Expected 2 Got 1 Cigar flag didn't match for test_72_280_12:1:0_11:0:0_2 ! Expected 0 Got 4 Cigar length didn't match for test_72_280_12:1:0_11:0:0_2 ! Expected 1 Got 3 Cigar length didn't match for test_72_280_12:1:0_11:0:0_2 ! Expected 3 Got 2 Cigar length didn't match for test_72_280_12:1:0_11:0:0_2 ! Expected 2 Got 8 Condensing cigar ... Cigar length didn't match after condense! Expected 93 Got 94 Cigar flag didn't match! Expected  Got 4 Cigar length didn't match after condense! Expected 2 Got 13 test_92_337_8:0:0_10:0:0_21 Forward Reverse Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 1 Got 56 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 0 Got 6 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 56 Got 1 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 1 Got 6 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 0 Got 6 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 3 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 3 Got 99 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 0 Got 6 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 99 Got 2 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 2 Got 65 Condensing cigar ... Cigar length didn't match after condense! Expected 19 Got 75 Cigar length didn't match after condense! Expected 56 Got 6 Cigar length didn't match after condense! Expected 1 Got 3 Cigar length didn't match after condense! Expected 6 Got 99 Cigar length didn't match after condense! Expected 3 Got 2 Cigar length didn't match after condense! Expected 99 Got 65 test_147_337_11:1:0_11:1:0_11 Forward Reverse Condensing cigar ... test_149_298_7:0:0_11:0:0_d Forward Reverse Condensing cigar ... test_184_379_11:1:0_8:1:0_26 Forward Reverse Cigar flag didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 6 Got 0 Cigar length didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 2 Got 89 Cigar flag didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 0 Got 4 Cigar length didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 89 Got 18 Condensing cigar ... Cigar length didn't match after condense! Expected 71 Got 160 Cigar flag didn't match! Expected  Got 4 Cigar length didn't match after condense! Expected 2 Got 18 FAIL check_unpaired_trim (exit status: 255) ============================================================================ Testsuite summary for ivar 1.3.1 ============================================================================ # TOTAL: 18 # PASS: 17 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 ============================================================================ See tests/test-suite.log Please report to gkarthik@scripps.edu ============================================================================ make[5]: *** [Makefile:913: test-suite.log] Error 1 make[5]: Leaving directory '/<>/tests' make[4]: *** [Makefile:1021: check-TESTS] Error 2 make[4]: Leaving directory '/<>/tests' make[3]: *** [Makefile:1213: check-am] Error 2 make[3]: Leaving directory '/<>/tests' make[2]: *** [Makefile:371: check-recursive] Error 1 make[2]: Leaving directory '/<>' dh_auto_test: error: make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:16: override_dh_auto_test] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:12: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2023-01-04T19:05:50Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 55180 Build-Time: 59 Distribution: lunar Fail-Stage: build Host Architecture: ppc64el Install-Time: 11 Job: ivar_1.3.1+dfsg-7.dsc Machine Architecture: ppc64el Package: ivar Package-Time: 71 Source-Version: 1.3.1+dfsg-7 Space: 55180 Status: attempted Version: 1.3.1+dfsg-7 -------------------------------------------------------------------------------- Finished at 2023-01-04T19:05:50Z Build needed 00:01:11, 55180k disk space E: Build failure (dpkg-buildpackage died) Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-25092441 Scanning for processes to kill in build PACKAGEBUILD-25092441