https://launchpad.net/ubuntu/+archive/test-rebuild-20240502-noble-gcc/+build/28296924
RUN: /usr/share/launchpad-buildd/bin/builder-prep 
Kernel version: Linux lcy02-amd64-071 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:45:47 UTC 2024 x86_64
Buildd toolchain package versions: launchpad-buildd_237~660~ubuntu20.04.1 python3-lpbuildd_237~660~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1.
Syncing the system clock with the buildd NTP service...
 9 May 00:01:24 ntpdate[1880]: adjust time server 10.131.248.1 offset 0.003170 sec
RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28296924 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9
Creating target for build PACKAGEBUILD-28296924
RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28296924
Starting target for build PACKAGEBUILD-28296924
RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28296924 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble main' 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble main' 'deb http://ftpmaster.internal/ubuntu noble main restricted universe multiverse'
Overriding sources.list in build-PACKAGEBUILD-28296924
RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28296924
Adding trusted keys to build-PACKAGEBUILD-28296924
pub   rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC]
      Key fingerprint = 60C3 1780 3A41 BA51 845E  371A 1E93 77A2 BA9E F27F
uid                            Launchpad Toolchain builds

RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28296924
Updating target for build PACKAGEBUILD-28296924
Get:1 http://ftpmaster.internal/ubuntu noble InRelease [256 kB]
Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 Packages [1401 kB]
Get:3 http://ftpmaster.internal/ubuntu noble/main Translation-en [513 kB]
Get:4 http://ftpmaster.internal/ubuntu noble/restricted amd64 Packages [93.9 kB]
Get:5 http://ftpmaster.internal/ubuntu noble/restricted Translation-en [18.7 kB]
Get:6 http://ftpmaster.internal/ubuntu noble/universe amd64 Packages [15.0 MB]
Get:7 http://ftpmaster.internal/ubuntu noble/universe Translation-en [5982 kB]
Get:8 http://ftpmaster.internal/ubuntu noble/multiverse amd64 Packages [269 kB]
Get:9 http://ftpmaster.internal/ubuntu noble/multiverse Translation-en [118 kB]
Get:10 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble InRelease [23.6 kB]
Get:11 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble InRelease [23.6 kB]
Get:12 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 Packages [29.7 kB]
Get:13 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main Translation-en [14.9 kB]
Get:14 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 Packages [18.2 kB]
Get:15 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main Translation-en [4996 B]
Fetched 23.8 MB in 3s (9139 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
  cpp-13 g++-13 g++-13-x86-64-linux-gnu libnsl-dev libperl5.36
  libstdc++-13-dev libtirpc-dev libunistring2 perl-modules-5.36
Use 'sudo apt autoremove' to remove them.
The following packages will be REMOVED:
  libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30*
  libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3*
  libtirpc3* usrmerge*
The following NEW packages will be installed:
  cpp-13-x86-64-linux-gnu cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu
  g++-13-x86-64-linux-gnu g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu
  gcc-13-x86-64-linux-gnu gcc-14 gcc-14-base gcc-14-x86-64-linux-gnu
  gcc-x86-64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64
  libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64
  libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64
  libssl3t64 libstdc++-14-dev libtirpc3t64 libunistring5 perl-modules-5.38
The following packages will be upgraded:
  advancecomp apt apt-utils base-files base-passwd bash bash-completion
  binutils binutils-common binutils-x86-64-linux-gnu bsdextrautils bsdutils
  bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n
  debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13
  gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init
  init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8
  libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils
  libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0
  libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12
  libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl
  libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10
  libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0
  libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libjansson4
  libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0
  liblocale-gettext-perl liblockfile-bin liblockfile1 liblsan0 liblz4-1
  liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2
  libnss-nis libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin
  libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libquadmath0 libseccomp2
  libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1
  libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6
  libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl
  libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1
  libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login
  logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl
  optipng passwd patch perl perl-base pinentry-curses procps psmisc
  readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev
  systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux
  uuid-runtime xz-utils zlib1g
177 upgraded, 31 newly installed, 14 to remove and 0 not upgraded.
Need to get 453 MB of archives.
After this operation, 1287 MB of additional disk space will be used.
Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-common all 1.3.4+ds-1.1build1 [8094 B]
Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1.1build1 [193 kB]
Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3build3 [70.5 kB]
Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl2 amd64 1.3.0-3build3 [41.4 kB]
Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.1build1 [82.6 kB]
Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libgssapi-krb5-2 amd64 1.20.1-6ubuntu2 [142 kB]
Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5-3 amd64 1.20.1-6ubuntu2 [347 kB]
Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libk5crypto3 amd64 1.20.1-6ubuntu2 [81.7 kB]
Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5support0 amd64 1.20.1-6ubuntu2 [33.5 kB]
Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libacl1 amd64 2.3.2-1build1 [16.8 kB]
Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libapparmor1 amd64 4.0.0-beta3-0ubuntu3 [49.5 kB]
Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit-common all 1:3.1.2-2.1build1 [5736 B]
Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libcap-ng0 amd64 0.8.4-2build2 [15.2 kB]
Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit1 amd64 1:3.1.2-2.1build1 [46.9 kB]
Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libblkid1 amd64 2.39.3-9ubuntu6 [123 kB]
Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libcap2 amd64 1:2.66-5ubuntu2 [30.0 kB]
Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4build1 [112 kB]
Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt1 amd64 1:4.4.36-4build1 [82.3 kB]
Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error-l10n all 1.47-3build2 [8064 B]
Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error0 amd64 1.47-3build2 [70.0 kB]
Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libgcrypt20 amd64 1.10.3-2build1 [532 kB]
Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma5 amd64 5.6.1+really5.4.5-1 [127 kB]
Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libzstd1 amd64 1.5.5+dfsg2-2build1 [299 kB]
Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libkmod2 amd64 31+20240202-2ubuntu7 [51.7 kB]
Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 liblz4-1 amd64 1.9.4-1build1 [63.0 kB]
Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-8-0 amd64 10.42-4ubuntu2 [227 kB]
Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libselinux1 amd64 3.5-2ubuntu2 [79.6 kB]
Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 libmount1 amd64 2.39.3-9ubuntu6 [134 kB]
Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB]
Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [734 kB]
Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm6t64 amd64 1.23-5.1build1 [34.4 kB]
Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm-compat4t64 amd64 1.23-5.1build1 [6710 B]
Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 libperl5.38t64 amd64 5.38.2-3.2build2 [4873 kB]
Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 perl amd64 5.38.2-3.2build2 [231 kB]
Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 perl-base amd64 5.38.2-3.2build2 [1823 kB]
Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 liblocale-gettext-perl amd64 1.07-6ubuntu5 [15.8 kB]
Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libtext-iconv-perl amd64 1.7-8build3 [13.5 kB]
Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libtext-charwidth-perl amd64 0.04-11build3 [9358 B]
Get:39 http://ftpmaster.internal/ubuntu noble/universe amd64 libnss-nisplus amd64 1.3-5build1 [22.4 kB]
Get:40 http://ftpmaster.internal/ubuntu noble/universe amd64 libnss-nis amd64 3.1-0ubuntu7 [26.5 kB]
Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu8 [20.4 kB]
Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu7 [67.4 kB]
Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu8 [2124 kB]
Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu8 [3265 kB]
Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu8 [682 kB]
Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 openssl amd64 3.0.13-0ubuntu3 [1002 kB]
Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libsystemd-shared amd64 255.4-1ubuntu8 [2067 kB]
Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libcryptsetup12 amd64 2:2.7.0-1ubuntu4 [266 kB]
Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libssl3t64 amd64 3.0.13-0ubuntu3 [1936 kB]
Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 systemd-dev all 255.4-1ubuntu8 [104 kB]
Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 systemd-sysv amd64 255.4-1ubuntu8 [11.9 kB]
Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 systemd amd64 255.4-1ubuntu8 [3471 kB]
Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libsystemd0 amd64 255.4-1ubuntu8 [429 kB]
Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules-bin amd64 1.5.3-5ubuntu5 [51.9 kB]
Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules amd64 1.5.3-5ubuntu5 [279 kB]
Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libnettle8t64 amd64 3.9.1-2.2build1 [182 kB]
Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libhogweed6t64 amd64 3.9.1-2.2build1 [199 kB]
Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libp11-kit0 amd64 0.25.3-4ubuntu2 [299 kB]
Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libunistring5 amd64 1.1-2build1 [535 kB]
Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libgnutls30t64 amd64 3.8.3-1.1ubuntu3 [998 kB]
Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libapt-pkg6.0t64 amd64 2.7.14build2 [985 kB]
Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 bzip2 amd64 1.0.8-5.1 [34.5 kB]
Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [34.3 kB]
Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libudev1 amd64 255.4-1ubuntu8 [174 kB]
Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libxxhash0 amd64 0.8.2-2build1 [24.1 kB]
Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g amd64 1:1.3.dfsg-3.1ubuntu2 [62.8 kB]
Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2ubuntu6 [253 kB]
Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libffi8 amd64 3.4.6-1build1 [24.7 kB]
Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libidn2-0 amd64 2.3.7-2build1 [66.2 kB]
Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libtasn1-6 amd64 4.19.0-3build1 [43.9 kB]
Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libdebconfclient0 amd64 0.271ubuntu3 [11.4 kB]
Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 base-passwd amd64 3.6.3build1 [51.1 kB]
Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libassuan0 amd64 2.5.6-1build1 [37.3 kB]
Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libsqlite3-0 amd64 3.45.1-1ubuntu2 [701 kB]
Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 gpg amd64 2.4.4-2ubuntu17 [565 kB]
Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline8t64 amd64 8.2-4build1 [153 kB]
Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 readline-common all 8.2-4build1 [56.5 kB]
Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libncursesw6 amd64 6.4+20240113-1ubuntu2 [148 kB]
Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libtinfo6 amd64 6.4+20240113-1ubuntu2 [108 kB]
Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 gpg-agent amd64 2.4.4-2ubuntu17 [227 kB]
Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 gpgconf amd64 2.4.4-2ubuntu17 [103 kB]
Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 pinentry-curses amd64 1.2.1-3ubuntu5 [35.2 kB]
Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 init-system-helpers all 1.66ubuntu1 [39.4 kB]
Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libnpth0t64 amd64 1.6-3.1build1 [8378 B]
Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 gpgv amd64 2.4.4-2ubuntu17 [157 kB]
Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-keyring all 2023.11.28.1 [11.1 kB]
Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libseccomp2 amd64 2.5.5-1ubuntu3 [50.3 kB]
Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 apt-utils amd64 2.7.14build2 [217 kB]
Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 apt amd64 2.7.14build2 [1375 kB]
Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 debconf-i18n all 1.5.86ubuntu1 [205 kB]
Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 debconf all 1.5.86ubuntu1 [124 kB]
Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libpam0g amd64 1.5.3-5ubuntu5 [67.7 kB]
Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libargon2-1 amd64 0~20190702+dfsg-4build1 [20.8 kB]
Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-3ubuntu3 [139 kB]
Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libjson-c5 amd64 0.17-1build1 [35.3 kB]
Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libuuid1 amd64 2.39.3-9ubuntu6 [35.2 kB]
Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libfdisk1 amd64 2.39.3-9ubuntu6 [146 kB]
Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 mount amd64 2.39.3-9ubuntu6 [118 kB]
Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libcom-err2 amd64 1.47.0-2.4~exp1ubuntu4 [22.8 kB]
Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libkeyutils1 amd64 1.6.3-3build1 [9490 B]
Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-31.31 [1598 kB]
Get:102 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 gcc-14-base amd64 14-20240429-1ubuntu1 [48.0 kB]
Get:103 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libgcc-s1 amd64 14-20240429-1ubuntu1 [78.3 kB]
Get:104 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libstdc++6 amd64 14-20240429-1ubuntu1 [794 kB]
Get:105 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 cpp-14-x86-64-linux-gnu amd64 14-20240429-1ubuntu1 [101 MB]
Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 base-files amd64 13ubuntu10 [73.6 kB]
Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17build1 [89.9 kB]
Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 bash amd64 5.2.21-2ubuntu4 [794 kB]
Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 bsdutils amd64 1:2.39.3-9ubuntu6 [95.0 kB]
Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 coreutils amd64 9.4-3ubuntu6 [1412 kB]
Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 tar amd64 1.35+dfsg-3build1 [253 kB]
Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg amd64 1.22.6ubuntu6 [1283 kB]
Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 dash amd64 0.5.12-6ubuntu5 [89.8 kB]
Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 diffutils amd64 1:3.10-1build1 [177 kB]
Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 findutils amd64 4.9.0-5build1 [298 kB]
Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 grep amd64 3.11-4build1 [162 kB]
Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 gzip amd64 1.12-1ubuntu3 [98.8 kB]
Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 hostname amd64 3.23+nmu2ubuntu2 [11.1 kB]
Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 login amd64 1:4.13+dfsg1-4ubuntu3 [202 kB]
Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-bin amd64 6.4+20240113-1ubuntu2 [188 kB]
Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 sed amd64 4.9-2build1 [193 kB]
Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 util-linux amd64 2.39.3-9ubuntu6 [1127 kB]
Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB]
Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 sysvinit-utils amd64 3.08-6ubuntu3 [34.2 kB]
Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 logsave amd64 1.47.0-2.4~exp1ubuntu4 [22.5 kB]
Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libext2fs2t64 amd64 1.47.0-2.4~exp1ubuntu4 [222 kB]
Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 e2fsprogs amd64 1.47.0-2.4~exp1ubuntu4 [601 kB]
Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 optipng amd64 0.7.8+ds-1build2 [110 kB]
Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libpng16-16t64 amd64 1.6.43-5build1 [187 kB]
Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 init amd64 1.66ubuntu1 [6186 B]
Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libsmartcols1 amd64 2.39.3-9ubuntu6 [64.8 kB]
Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 uuid-runtime amd64 2.39.3-9ubuntu6 [33.1 kB]
Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libattr1 amd64 1:2.5.2-1build1 [11.3 kB]
Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libmd0 amd64 1.1.0-2build1 [27.0 kB]
Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-runtime all 1.5.3-5ubuntu5 [40.8 kB]
Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage-common all 3.5-1build5 [10.1 kB]
Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libsepol2 amd64 3.5-2build1 [303 kB]
Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage2 amd64 3.5-1build5 [93.2 kB]
Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 passwd amd64 1:4.13+dfsg1-4ubuntu3 [845 kB]
Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libproc2-0 amd64 2:4.0.4-4ubuntu3 [59.1 kB]
Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libss2 amd64 1.47.0-2.4~exp1ubuntu4 [17.0 kB]
Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 mawk amd64 1.3.4.20240123-1build1 [127 kB]
Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 procps amd64 2:4.0.4-4ubuntu3 [708 kB]
Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 sensible-utils all 0.0.22 [22.5 kB]
Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 ca-certificates all 20240203 [159 kB]
Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB]
Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 tzdata all 2024a-2ubuntu1 [273 kB]
Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 bash-completion all 1:2.11-8 [180 kB]
Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 bsdextrautils amd64 2.39.3-9ubuntu6 [73.8 kB]
Get:150 http://ftpmaster.internal/ubuntu noble/main amd64 libgpm2 amd64 1.20.7-11 [14.1 kB]
Get:151 http://ftpmaster.internal/ubuntu noble/main amd64 libip4tc2 amd64 1.8.10-3ubuntu2 [23.3 kB]
Get:152 http://ftpmaster.internal/ubuntu noble/main amd64 libjansson4 amd64 2.14-2build2 [32.8 kB]
Get:153 http://ftpmaster.internal/ubuntu noble/main amd64 psmisc amd64 23.7-1build1 [179 kB]
Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 xz-utils amd64 5.6.1+really5.4.5-1 [267 kB]
Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 advancecomp amd64 2.5-1build1 [182 kB]
Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 libgprofng0 amd64 2.42-4ubuntu2 [851 kB]
Get:157 http://ftpmaster.internal/ubuntu noble/main amd64 libctf0 amd64 2.42-4ubuntu2 [94.5 kB]
Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 libctf-nobfd0 amd64 2.42-4ubuntu2 [97.1 kB]
Get:159 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-x86-64-linux-gnu amd64 2.42-4ubuntu2 [2469 kB]
Get:160 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 g++ amd64 4:14-20240120-6ubuntu1 [1102 B]
Get:161 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 gcc amd64 4:14-20240120-6ubuntu1 [5002 B]
Get:162 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 cpp amd64 4:14-20240120-6ubuntu1 [22.5 kB]
Get:163 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:14-20240120-6ubuntu1 [5372 B]
Get:164 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libcc1-0 amd64 14-20240429-1ubuntu1 [47.7 kB]
Get:165 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libgomp1 amd64 14-20240429-1ubuntu1 [148 kB]
Get:166 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libitm1 amd64 14-20240429-1ubuntu1 [28.9 kB]
Get:167 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libatomic1 amd64 14-20240429-1ubuntu1 [10.4 kB]
Get:168 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libasan8 amd64 14-20240429-1ubuntu1 [3025 kB]
Get:169 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 liblsan0 amd64 14-20240429-1ubuntu1 [1313 kB]
Get:170 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 g++-13 amd64 13.2.0-24ubuntu1 [15.0 kB]
Get:171 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-24ubuntu1 [484 kB]
Get:172 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-24ubuntu1 [1032 B]
Get:173 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-24ubuntu1 [11.2 MB]
Get:174 http://ftpmaster.internal/ubuntu noble/main amd64 libbinutils amd64 2.42-4ubuntu2 [572 kB]
Get:175 http://ftpmaster.internal/ubuntu noble/main amd64 binutils amd64 2.42-4ubuntu2 [18.0 kB]
Get:176 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-common amd64 2.42-4ubuntu2 [239 kB]
Get:177 http://ftpmaster.internal/ubuntu noble/main amd64 libsframe1 amd64 2.42-4ubuntu2 [14.8 kB]
Get:178 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3build1 [680 kB]
Get:179 http://ftpmaster.internal/ubuntu noble/main amd64 libmpfr6 amd64 4.2.1-1build1 [355 kB]
Get:180 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB]
Get:181 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg-dev all 1.22.6ubuntu6 [1074 kB]
Get:182 http://ftpmaster.internal/ubuntu noble/main amd64 libdpkg-perl all 1.22.6ubuntu6 [268 kB]
Get:183 http://ftpmaster.internal/ubuntu noble/main amd64 patch amd64 2.7.6-7build3 [104 kB]
Get:184 http://ftpmaster.internal/ubuntu noble/main amd64 make amd64 4.3-4.1build2 [180 kB]
Get:185 http://ftpmaster.internal/ubuntu noble/main amd64 lto-disabled-list all 47 [12.4 kB]
Get:186 http://ftpmaster.internal/ubuntu noble/main amd64 libfakeroot amd64 1.33-1 [32.4 kB]
Get:187 http://ftpmaster.internal/ubuntu noble/main amd64 fakeroot amd64 1.33-1 [67.2 kB]
Get:188 http://ftpmaster.internal/ubuntu noble/main amd64 liblockfile-bin amd64 1.17-1build3 [11.2 kB]
Get:189 http://ftpmaster.internal/ubuntu noble/main amd64 liblockfile1 amd64 1.17-1build3 [6840 B]
Get:190 http://ftpmaster.internal/ubuntu noble/main amd64 lockfile-progs amd64 0.1.19build2 [8522 B]
Get:191 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libubsan1 amd64 14-20240429-1ubuntu1 [1175 kB]
Get:192 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-24ubuntu1 [2400 kB]
Get:193 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libquadmath0 amd64 14-20240429-1ubuntu1 [153 kB]
Get:194 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libhwasan0 amd64 14-20240429-1ubuntu1 [1632 kB]
Get:195 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-24ubuntu1 [2688 kB]
Get:196 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libtsan2 amd64 14-20240429-1ubuntu1 [2735 kB]
Get:197 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 gcc-13-base amd64 13.2.0-24ubuntu1 [49.3 kB]
Get:198 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-24ubuntu1 [21.9 MB]
Get:199 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-24ubuntu1 [12.5 MB]
Get:200 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libgcc-14-dev amd64 14-20240429-1ubuntu1 [2827 kB]
Get:201 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 gcc-14-x86-64-linux-gnu amd64 14-20240429-1ubuntu1 [114 MB]
Get:202 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libstdc++-14-dev amd64 14-20240429-1ubuntu1 [2483 kB]
Get:203 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 g++-14-x86-64-linux-gnu amd64 14-20240429-1ubuntu1 [110 MB]
Get:204 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 gcc-14 amd64 14-20240429-1ubuntu1 [488 kB]
Get:205 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 g++-14 amd64 14-20240429-1ubuntu1 [15.4 kB]
Get:206 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:14-20240120-6ubuntu1 [1224 B]
Get:207 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:14-20240120-6ubuntu1 [972 B]
Get:208 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 cpp-14 amd64 14-20240429-1ubuntu1 [1038 B]
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Current default time zone: 'Etc/UTC'
Local time is now:      Thu May  9 00:02:00 UTC 2024.
Universal Time is now:  Thu May  9 00:02:00 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up fakeroot (1.33-1) ...
Setting up rpcsvc-proto (1.4.2-0ubuntu7) ...
Setting up gcc-13-base:amd64 (13.2.0-24ubuntu1) ...
Setting up make (4.3-4.1build2) ...
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Setting up libproc2-0:amd64 (2:4.0.4-4ubuntu3) ...
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Setting up libmpc3:amd64 (1.3.1-1build1) ...
Setting up libatomic1:amd64 (14-20240429-1ubuntu1) ...
Setting up patch (2.7.6-7build3) ...
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Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-7) ...
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Setting up uuid-runtime (2.39.3-9ubuntu6) ...
Running in chroot, ignoring request.
invoke-rc.d: policy-rc.d denied execution of restart.
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Setting up procps (2:4.0.4-4ubuntu3) ...
Installing new version of config file /etc/sysctl.conf ...
Setting up mawk (1.3.4.20240123-1build1) ...
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Setting up liblocale-gettext-perl (1.07-6ubuntu5) ...
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Setting up apt-utils (2.7.14build2) ...
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Setting up debconf-i18n (1.5.86ubuntu1) ...
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Updating certificates in /etc/ssl/certs...
rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL
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Processing triggers for libc-bin (2.39-0ubuntu8) ...
Processing triggers for debianutils (5.17build1) ...
(Reading database ... 16964 files and directories currently installed.)
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Updating certificates in /etc/ssl/certs...
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Running hooks in /etc/ca-certificates/update.d...
done.
RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28296924 amd64 noble -c chroot:build-PACKAGEBUILD-28296924 --arch=amd64 --dist=noble --nolog -A blimps_3.9+ds-1.dsc
Initiating build PACKAGEBUILD-28296924 with 4 jobs across 4 processor cores.
Kernel reported to sbuild: 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:45:47 UTC 2024 x86_64
sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-071.buildd

+==============================================================================+
| blimps 3.9+ds-1 (amd64)                      Thu, 09 May 2024 00:02:04 +0000 |
+==============================================================================+

Package: blimps
Version: 3.9+ds-1
Source Version: 3.9+ds-1
Distribution: noble
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: binary

I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28296924/chroot-autobuild' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/blimps-kSytMZ/resolver-w7SvAM' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

blimps_3.9+ds-1.dsc exists in .; copying to chroot
I: NOTICE: Log filtering will replace 'build/blimps-kSytMZ/blimps-3.9+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/blimps-kSytMZ' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 12~), d-shlibs (>= 0.84~), build-essential, fakeroot
Filtered Build-Depends: debhelper (>= 12~), d-shlibs (>= 0.84~), build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [381 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [463 B]
Fetched 1801 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  apt-utils bash-completion ca-certificates cpp-13 debconf-i18n g++-13
  g++-13-x86-64-linux-gnu krb5-locales libgpg-error-l10n libgpm2
  libgssapi-krb5-2 libip4tc2 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis
  libnss-nisplus libperl5.36 libstdc++-13-dev libtext-charwidth-perl
  libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev
  libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev d-shlibs debhelper debugedit
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1t64
  libelf1t64 libfile-stripnondeterminism-perl libicu74 libmagic-mgc
  libmagic1t64 libpipeline1 libsub-override-perl libtool libuchardet0 libxml2
  m4 man-db po-debconf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  libmail-box-perl
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev d-shlibs debhelper debugedit
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1t64
  libelf1t64 libfile-stripnondeterminism-perl libicu74 libmagic-mgc
  libmagic1t64 libpipeline1 libsub-override-perl libtool libuchardet0 libxml2
  m4 man-db po-debconf sbuild-build-depends-main-dummy
0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded.
Need to get 18.9 MB of archives.
After this operation, 68.2 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [676 B]
Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libelf1t64 amd64 0.190-1.1build4 [57.6 kB]
Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libicu74 amd64 74.2-1ubuntu3 [10.9 MB]
Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libxml2 amd64 2.9.14+dfsg-1.3ubuntu3 [762 kB]
Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libmagic-mgc amd64 1:5.45-3build1 [307 kB]
Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libmagic1t64 amd64 1:5.45-3build1 [87.2 kB]
Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 file amd64 1:5.45-3build1 [22.0 kB]
Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 gettext-base amd64 0.21-14ubuntu2 [38.4 kB]
Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libuchardet0 amd64 0.0.8-1build1 [75.3 kB]
Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 groff-base amd64 1.23.0-3build2 [1020 kB]
Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libpipeline1 amd64 1.5.7-2 [23.6 kB]
Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 man-db amd64 2.12.0-4build2 [1237 kB]
Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 m4 amd64 1.4.19-4build1 [244 kB]
Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 autoconf all 2.71-3 [339 kB]
Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 autotools-dev all 20220109.1 [44.9 kB]
Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 autopoint all 0.21-14ubuntu2 [422 kB]
Get:18 http://ftpmaster.internal/ubuntu noble/universe amd64 d-shlibs all 0.106 [11.2 kB]
Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB]
Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtool all 2.4.7-7build1 [166 kB]
Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 dh-autoreconf all 20 [16.1 kB]
Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-override-perl all 0.10-1 [10.0 kB]
Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB]
Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 dh-strip-nondeterminism all 1.13.1-1 [5362 B]
Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libdw1t64 amd64 0.190-1.1build4 [261 kB]
Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 debugedit amd64 1:5.0-5build2 [46.1 kB]
Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 dwz amd64 0.15-1build6 [115 kB]
Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 gettext amd64 0.21-14ubuntu2 [864 kB]
Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 po-debconf all 1.0.21+nmu1 [233 kB]
Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 debhelper all 13.14.1ubuntu5 [869 kB]
Preconfiguring packages ...
Fetched 18.9 MB in 0s (78.4 MB/s)
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(Reading database ... 16964 files and directories currently installed.)
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Setting up libpipeline1:amd64 (1.5.7-2) ...
Setting up libmagic-mgc (1:5.45-3build1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.14.1ubuntu5) ...
Setting up libmagic1t64:amd64 (1:5.45-3build1) ...
Setting up gettext-base (0.21-14ubuntu2) ...
Setting up m4 (1.4.19-4build1) ...
Setting up file (1:5.45-3build1) ...
Setting up libelf1t64:amd64 (0.190-1.1build4) ...
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Setting up autopoint (0.21-14ubuntu2) ...
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Setting up autoconf (2.71-3) ...
Setting up libicu74:amd64 (74.2-1ubuntu3) ...
Setting up dwz (0.15-1build6) ...
Setting up libuchardet0:amd64 (0.0.8-1build1) ...
Setting up debugedit (1:5.0-5build2) ...
Setting up libsub-override-perl (0.10-1) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.3ubuntu3) ...
Setting up automake (1:1.16.5-1.3ubuntu1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-14ubuntu2) ...
Setting up libtool (2.4.7-7build1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up groff-base (1.23.0-3build2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.12.0-4build2) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer.
Setting up debhelper (13.14.1ubuntu5) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.39-0ubuntu8) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:45:47 UTC 2024 amd64 (x86_64)
Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-24ubuntu1 g++-14_14-20240429-1ubuntu1 gcc-13_13.2.0-24ubuntu1 gcc-14_14-20240429-1ubuntu1 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-24ubuntu1 libstdc++-14-dev_14-20240429-1ubuntu1 libstdc++6_14-20240429-1ubuntu1 linux-libc-dev_6.8.0-31.31
Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13ubuntu10 base-passwd_3.6.3build1 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 binutils-x86-64-linux-gnu_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu6 bsdutils_1:2.39.3-9ubuntu6 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3ubuntu6 cpp_4:14-20240120-6ubuntu1 cpp-13_13.2.0-24ubuntu1 cpp-13-x86-64-linux-gnu_13.2.0-24ubuntu1 cpp-14_14-20240429-1ubuntu1 cpp-14-x86-64-linux-gnu_14-20240429-1ubuntu1 cpp-x86-64-linux-gnu_4:14-20240120-6ubuntu1 d-shlibs_0.106 dash_0.5.12-6ubuntu5 debconf_1.5.86ubuntu1 debconf-i18n_1.5.86ubuntu1 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1build1 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu4 fakeroot_1.33-1 file_1:5.45-3build1 findutils_4.9.0-5build1 g++_4:14-20240120-6ubuntu1 g++-13_13.2.0-24ubuntu1 g++-13-x86-64-linux-gnu_13.2.0-24ubuntu1 g++-14_14-20240429-1ubuntu1 g++-14-x86-64-linux-gnu_14-20240429-1ubuntu1 g++-x86-64-linux-gnu_4:14-20240120-6ubuntu1 gcc_4:14-20240120-6ubuntu1 gcc-13_13.2.0-24ubuntu1 gcc-13-base_13.2.0-24ubuntu1 gcc-13-x86-64-linux-gnu_13.2.0-24ubuntu1 gcc-14_14-20240429-1ubuntu1 gcc-14-base_14-20240429-1ubuntu1 gcc-14-x86-64-linux-gnu_14-20240429-1ubuntu1 gcc-x86-64-linux-gnu_4:14-20240120-6ubuntu1 gettext_0.21-14ubuntu2 gettext-base_0.21-14ubuntu2 gpg_2.4.4-2ubuntu17 gpg-agent_2.4.4-2ubuntu17 gpgconf_2.4.4-2ubuntu17 gpgv_2.4.4-2ubuntu17 grep_3.11-4build1 groff-base_1.23.0-3build2 gzip_1.12-1ubuntu3 hostname_3.23+nmu2ubuntu2 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-6ubuntu2 libacl1_2.3.2-1build1 libapparmor1_4.0.0-beta3-0ubuntu3 libapt-pkg6.0t64_2.7.14build2 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4build1 libasan8_14-20240429-1ubuntu1 libassuan0_2.5.6-1build1 libatomic1_14-20240429-1ubuntu1 libattr1_1:2.5.2-1build1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libbinutils_2.42-4ubuntu2 libblkid1_2.39.3-9ubuntu6 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-0ubuntu8 libc-dev-bin_2.39-0ubuntu8 libc6_2.39-0ubuntu8 libc6-dev_2.39-0ubuntu8 libcap-ng0_0.8.4-2build2 libcap2_1:2.66-5ubuntu2 libcc1-0_14-20240429-1ubuntu1 libcom-err2_1.47.0-2.4~exp1ubuntu4 libcrypt-dev_1:4.4.36-4build1 libcrypt1_1:4.4.36-4build1 libcryptsetup12_2:2.7.0-1ubuntu4 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.271ubuntu3 libdebhelper-perl_13.14.1ubuntu5 libdevmapper1.02.1_2:1.02.185-3ubuntu3 libdpkg-perl_1.22.6ubuntu6 libdw1t64_0.190-1.1build4 libelf1t64_0.190-1.1build4 libext2fs2t64_1.47.0-2.4~exp1ubuntu4 libfakeroot_1.33-1 libfdisk1_2.39.3-9ubuntu6 libffi8_3.4.6-1build1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-24ubuntu1 libgcc-14-dev_14-20240429-1ubuntu1 libgcc-s1_14-20240429-1ubuntu1 libgcrypt20_1.10.3-2build1 libgdbm-compat4t64_1.23-5.1build1 libgdbm6t64_1.23-5.1build1 libgmp10_2:6.3.0+dfsg-2ubuntu6 libgnutls30t64_3.8.3-1.1ubuntu3 libgomp1_14-20240429-1ubuntu1 libgpg-error-l10n_1.47-3build2 libgpg-error0_1.47-3build2 libgpm2_1.20.7-11 libgprofng0_2.42-4ubuntu2 libgssapi-krb5-2_1.20.1-6ubuntu2 libhogweed6t64_3.9.1-2.2build1 libhwasan0_14-20240429-1ubuntu1 libicu74_74.2-1ubuntu3 libidn2-0_2.3.7-2build1 libip4tc2_1.8.10-3ubuntu2 libisl23_0.26-3build1 libitm1_14-20240429-1ubuntu1 libjansson4_2.14-2build2 libjson-c5_0.17-1build1 libk5crypto3_1.20.1-6ubuntu2 libkeyutils1_1.6.3-3build1 libkmod2_31+20240202-2ubuntu7 libkrb5-3_1.20.1-6ubuntu2 libkrb5support0_1.20.1-6ubuntu2 liblocale-gettext-perl_1.07-6ubuntu5 liblockfile-bin_1.17-1build3 liblockfile1_1.17-1build3 liblsan0_14-20240429-1ubuntu1 liblz4-1_1.9.4-1build1 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3build1 libmagic1t64_1:5.45-3build1 libmd0_1.1.0-2build1 libmount1_2.39.3-9ubuntu6 libmpc3_1.3.1-1build1 libmpfr6_4.2.1-1build1 libncursesw6_6.4+20240113-1ubuntu2 libnettle8t64_3.9.1-2.2build1 libnpth0t64_1.6-3.1build1 libnsl-dev_1.3.0-3build3 libnsl2_1.3.0-3build3 libnss-nis_3.1-0ubuntu7 libnss-nisplus_1.3-5build1 libp11-kit0_0.25.3-4ubuntu2 libpam-modules_1.5.3-5ubuntu5 libpam-modules-bin_1.5.3-5ubuntu5 libpam-runtime_1.5.3-5ubuntu5 libpam0g_1.5.3-5ubuntu5 libpcre2-8-0_10.42-4ubuntu2 libperl5.36_5.36.0-9ubuntu1 libperl5.38t64_5.38.2-3.2build2 libpipeline1_1.5.7-2 libpng16-16t64_1.6.43-5build1 libproc2-0_2:4.0.4-4ubuntu3 libquadmath0_14-20240429-1ubuntu1 libreadline8t64_8.2-4build1 libseccomp2_2.5.5-1ubuntu3 libselinux1_3.5-2ubuntu2 libsemanage-common_3.5-1build5 libsemanage2_3.5-1build5 libsepol2_3.5-2build1 libsframe1_2.42-4ubuntu2 libsmartcols1_2.39.3-9ubuntu6 libsqlite3-0_3.45.1-1ubuntu2 libss2_1.47.0-2.4~exp1ubuntu4 libssl3t64_3.0.13-0ubuntu3 libstdc++-13-dev_13.2.0-24ubuntu1 libstdc++-14-dev_14-20240429-1ubuntu1 libstdc++6_14-20240429-1ubuntu1 libsub-override-perl_0.10-1 libsystemd-shared_255.4-1ubuntu8 libsystemd0_255.4-1ubuntu8 libtasn1-6_4.19.0-3build1 libtext-charwidth-perl_0.04-11build3 libtext-iconv-perl_1.7-8build3 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20240113-1ubuntu2 libtirpc-common_1.3.4+ds-1.1build1 libtirpc-dev_1.3.4+ds-1.1build1 libtirpc3t64_1.3.4+ds-1.1build1 libtool_2.4.7-7build1 libtsan2_14-20240429-1ubuntu1 libubsan1_14-20240429-1ubuntu1 libuchardet0_0.0.8-1build1 libudev1_255.4-1ubuntu8 libunistring2_1.0-2 libunistring5_1.1-2build1 libuuid1_2.39.3-9ubuntu6 libxml2_2.9.14+dfsg-1.3ubuntu3 libxxhash0_0.8.2-2build1 libzstd1_1.5.5+dfsg2-2build1 linux-libc-dev_6.8.0-31.31 lockfile-progs_0.1.19build2 login_1:4.13+dfsg1-4ubuntu3 logsave_1.47.0-2.4~exp1ubuntu4 lto-disabled-list_47 m4_1.4.19-4build1 make_4.3-4.1build2 man-db_2.12.0-4build2 mawk_1.3.4.20240123-1build1 mount_2.39.3-9ubuntu6 ncurses-base_6.4+20240113-1ubuntu2 ncurses-bin_6.4+20240113-1ubuntu2 openssl_3.0.13-0ubuntu3 optipng_0.7.8+ds-1build2 passwd_1:4.13+dfsg1-4ubuntu3 patch_2.7.6-7build3 perl_5.38.2-3.2build2 perl-base_5.38.2-3.2build2 perl-modules-5.36_5.36.0-9ubuntu1 perl-modules-5.38_5.38.2-3.2build2 pinentry-curses_1.2.1-3ubuntu5 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-4ubuntu3 psmisc_23.7-1build1 readline-common_8.2-4build1 rpcsvc-proto_1.4.2-0ubuntu7 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2build1 sensible-utils_0.0.22 systemd_255.4-1ubuntu8 systemd-dev_255.4-1ubuntu8 systemd-sysv_255.4-1ubuntu8 sysvinit-utils_3.08-6ubuntu3 tar_1.35+dfsg-3build1 tzdata_2024a-2ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-9ubuntu6 uuid-runtime_2.39.3-9ubuntu6 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: blimps
Binary: blimps-utils, blimps-examples, libblimps3-dev, libblimps3
Architecture: any
Version: 3.9+ds-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Laszlo Kajan <lkajan@rostlab.org>, Andreas Tille <tille@debian.org>
Homepage: https://web.archive.org/web/20170606235903/http://blocks.fhcrc.org/blocks/uploads/blimps/
Standards-Version: 4.3.0
Vcs-Browser: https://salsa.debian.org/med-team/blimps
Vcs-Git: https://salsa.debian.org/med-team/blimps.git
Build-Depends: debhelper (>= 12~), d-shlibs (>= 0.84~)
Package-List:
 blimps-examples deb non-free/science optional arch=any
 blimps-utils deb non-free/science optional arch=any
 libblimps3 deb non-free/libs optional arch=any
 libblimps3-dev deb non-free/libdevel optional arch=any
Checksums-Sha1:
 934f8ffc677cfaabea6132771e5e035f83631930 702420 blimps_3.9+ds.orig.tar.xz
 1f74227b5ae5e2178badc7d68f68339b39dd63f4 26004 blimps_3.9+ds-1.debian.tar.xz
Checksums-Sha256:
 8d3906a83538c5ff77c28e09b17765043f572c9ac69d2027b5b7279a7454ff0c 702420 blimps_3.9+ds.orig.tar.xz
 0fa17a55c4535f29aeccaf664f60e708268a1ecbec32a18db7a669a39ead09b0 26004 blimps_3.9+ds-1.debian.tar.xz
Files:
 46cfb685cfdfbc99f0fabb30f4414612 702420 blimps_3.9+ds.orig.tar.xz
 6d03b00d151cb39e603b89a1e017b928 26004 blimps_3.9+ds-1.debian.tar.xz
Autobuild: yes

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gpgv: Signature made Fri Jan 11 13:18:55 2019 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./blimps_3.9+ds-1.dsc: no acceptable signature found
dpkg-source: info: extracting blimps in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking blimps_3.9+ds.orig.tar.xz
dpkg-source: info: unpacking blimps_3.9+ds-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying gets.patch
dpkg-source: info: applying makefile.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying avoid_privacy_breach.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=noautodbgsym parallel=4
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28296924
SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28296924
SCHROOT_COMMAND=env
SCHROOT_GID=2501
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=build-PACKAGEBUILD-28296924
SCHROOT_UID=2001
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=unknown
USER=buildd
V=1

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon <buildd@lcy02-amd64-071.buildd> -b -rfakeroot
dpkg-buildpackage: info: source package blimps
dpkg-buildpackage: info: source version 3.9+ds-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 fakeroot debian/rules clean
dh clean
   dh_auto_clean
	make -j4 distclean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
if [ -d blimps ]; then make -C blimps -f Makefile.Linux clean; fi
if [ -d protomat ]; then make -C protomat -f Makefile.Linux clean; fi
make[2]: Entering directory '/<<PKGBUILDDIR>>/blimps'
rm -f blimps blweight blalign bldist blk2pssm rank_matrix retblock codehop htmlize-codehop oligo_melt mablock makeblockmap prints2blocks lisblk coduse narrow blkprob blk2slx LAMA find_biassed_blocks fastaseqs addseqs cobbler interpro pssmdist pssmBL papssm matrix_logob makelogob blocks_search LAMA_search block_vis format_block biassed_blocks_finder htmlize-LAMA show_aligned_blocks makelis blk2mot 
rm -f *.a *.o *~ 
make[2]: Entering directory '/<<PKGBUILDDIR>>/protomat'
/bin/rm -f *.o blksort getblock getseq multimat motifj motomat uextract blosum blastdat
if [ "." != "." ]; then rm -f -r .; fi
rm -f ./libblimps.so*
make[2]: Leaving directory '/<<PKGBUILDDIR>>/protomat'
 
make[2]: Leaving directory '/<<PKGBUILDDIR>>/blimps'
rm -f *.[12345678].gz
if [ -d "blimps-3.9" ]; then rm -rf blimps-3.9; fi
rm -rf	\
	blimps-3.9 \
	blimps-3.9.tar.gz
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean blimps/deps.mk
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 debian/rules build
dh build
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
   dh_auto_build
	make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make -C blimps -f Makefile.Linux VERSION=3.9 DEBCFLAGS="-g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1" DEBLDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now"
make -C protomat -f Makefile.Linux VERSION=3.9 DEBCFLAGS="-g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1" DEBLDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now"
make[2]: Entering directory '/<<PKGBUILDDIR>>/blimps'
/usr/bin/gcc -MM -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic blimps-mem.c blimps.c blweight.c blalign.c bldist.c blk2pssm.c rank_matrix.c retblock.c codehop.c htmlize-codehop.c oligo_melt.c mablock.c cobbler.c addseqs.c fastaseqs.c LAMA.c find_biassed_blocks.c makeblockmap.c prints2blocks.c lisblk.c coduse.c narrow.c blk2slx.c blkprob.c blocks.c config.c convert.c errors.c files.c frequency.c gcode.c lists.c matrix.c memory.c pattern.c scores.c scoring.c sequences.c sl.c strutil.c version.c options.c protomat.c interpro.c pssmdist.c pssmBL.c papssm.c matrix_logob.c makelogob.c blocks_search.c LAMA_search.c block_vis.c format_block.c biassed_blocks_finder.c htmlize-LAMA.c show_aligned_blocks.c blk2mot.c  > deps.mk
make[2]: Entering directory '/<<PKGBUILDDIR>>/protomat'
gcc -Wall -O2 -c blksort.c
gcc -Wall -O2 -c motmisc.c
gcc -Wall -O2 -c getblock.c
getblock.c: In function ‘main’:
getblock.c:132:7: error: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration]
  132 |       gets(blkfile);
      |       ^~~~
      |       fgets
blksort.c: In function ‘main’:
blksort.c:242:13: error: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration]
  242 |             gets(homfile);
      |             ^~~~
      |             fgets
blksort.c:184:9: warning: variable ‘db’ set but not used [-Wunused-but-set-variable]
  184 |    char db[FNAMELEN];
      |         ^~
motmisc.c: In function ‘dir_unix’:
motmisc.c:574:10: warning: function returns address of local variable [-Wreturn-local-addr]
  574 |    return(pros);
      |          ^
motmisc.c: In function ‘get_ids’:
motmisc.c:658:41: warning: the comparison will always evaluate as ‘true’ for the address of ‘entry’ will never be NULL [-Waddress]
  658 |          while (id != NULL && id->entry != NULL &&
      |                                         ^~
In file included from motmisc.c:24:
motifj.h:249:9: note: ‘entry’ declared here
  249 |    char entry[SNAMELEN+1];      /* sequence name */
      |         ^~~~~
getblock.c:97:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |          fgets(BlockFam, FNAMELEN, stdin);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blksort.c: In function ‘print_results’:
blksort.c:804:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  804 |         for (j=save_nresult; j<i; j++)  /* There are i-save_nresult blocks */
      |         ^~~
blksort.c:813:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  813 |          if (i > save_nresult &&  good_score &&
      |          ^~
motmisc.c: In function ‘extract_seqs’:
motmisc.c:838:53: warning: format not a string literal and no format arguments [-Wformat-security]
  838 |                              if (out) fprintf(fout, &line[dbs[db]->seq_offset]);
      |                                                     ^~~~~~~~~~~~~~~~~~~~~~~~~~
blksort.c:782:28: warning: variable ‘ctemp’ set but not used [-Wunused-but-set-variable]
  782 |    char save_fam[MAXAC+1], ctemp[MAXAC+1];
      |                            ^~~~~
getblock.c: In function ‘get_map’:
getblock.c:461:12: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  461 |            fgets(line, MAXLINE, fmap);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~
getblock.c: In function ‘get_fasta’:
getblock.c:485:12: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  485 |            fgets(line, MAXLINE, fdat);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~
getblock.c: In function ‘get_pdb’:
getblock.c:512:12: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  512 |            fgets(line, MAXLINE, fpdb);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~
blksort.c: In function ‘add_query’:
make[2]: *** [Makefile.Linux:69: getblock.o] Error 1
make[2]: *** Waiting for unfinished jobs....
blksort.c:1193:7: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1193 |       else if (i > Ntiles-1) i = Ntiles-1;
      |       ^~~~
blksort.c:1194:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1194 |            {
      |            ^
motmisc.c:708:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  708 |    fgets(line, MAXLINE, fin);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~
motmisc.c:857:15: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  857 |          else fgets(line, MAXLINE, fin);
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
motmisc.c:859:12: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  859 |       else fgets(line, MAXLINE, fin);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~
blksort.c: In function ‘align_blocks’:
blksort.c:1823:15: warning: variable ‘itemp’ set but not used [-Wunused-but-set-variable]
 1823 |    int first, itemp;
      |               ^~~~~
blksort.c: In function ‘strandcmp’:
blksort.c:2052:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2052 |    if (t1->frame < 0) strand1=-1; if (t2->frame < 0) strand2=-1;
      |    ^~
blksort.c:2052:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2052 |    if (t1->frame < 0) strand1=-1; if (t2->frame < 0) strand2=-1;
      |                                   ^~
blksort.c: In function ‘mincmp’:
blksort.c:2072:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2072 |    if (t1->frame < 0) strand1=-1; if (t2->frame < 0) strand2=-1;
      |    ^~
blksort.c:2072:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2072 |    if (t1->frame < 0) strand1=-1; if (t2->frame < 0) strand2=-1;
      |                                   ^~
blksort.c: In function ‘main’:
blksort.c:214:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  214 |       fgets(ctemp, FNAMELEN, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: *** [Makefile.Linux:67: blksort.o] Error 1
motmisc.c: In function ‘getscore’:
motmisc.c:244:7: warning: ‘fin’ may be used uninitialized [-Wmaybe-uninitialized]
  244 |    if (fin != NULL)
      |       ^
motmisc.c:201:10: note: ‘fin’ was declared here
  201 |    FILE *fin, *fstp;
      |          ^~~
motmisc.c: In function ‘check_entry’:
motmisc.c:902:13: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  902 |             strncpy(dbtemp, entry, len); dbtemp[len] = '\0';
      |             ^
motmisc.c:899:19: note: length computed here
  899 |             len = strlen(entry);
      |                   ^~~~~~~~~~~~~
make[2]: Leaving directory '/<<PKGBUILDDIR>>/protomat'
make[1]: *** [Makefile:20: protomat] Error 2
make[1]: *** Waiting for unfinished jobs....
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o blimps.o blimps.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o blimps-mem.o blimps-mem.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o blocks.o blocks.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o config.o config.c
blocks.c: In function ‘read_a_block_faster’:
blocks.c:1225:26: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘char (*)[100]’ [-Wformat=]
 1225 |         sscanf(Buffer, "%s (%d) %s %s",
      |                         ~^
      |                          |
      |                          char *
 1226 |            &(new_block->sequences[iseq].name),
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |            |
      |            char (*)[100]
blocks.c:1225:34: warning: format ‘%s’ expects argument of type ‘char *’, but argument 5 has type ‘char (*)[80]’ [-Wformat=]
 1225 |         sscanf(Buffer, "%s (%d) %s %s",
      |                                 ~^
      |                                  |
      |                                  char *
......
 1228 |            &ctemp,
      |            ~~~~~~                 
      |            |
      |            char (*)[80]
blocks.c:1225:37: warning: format ‘%s’ expects argument of type ‘char *’, but argument 6 has type ‘char (*)[20]’ [-Wformat=]
 1225 |         sscanf(Buffer, "%s (%d) %s %s",
      |                                    ~^
      |                                     |
      |                                     char *
......
 1229 |            &ctemp2  );
      |            ~~~~~~~                   
      |            |
      |            char (*)[20]
blocks.c: In function ‘read_block_header’:
blocks.c:167:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  167 |   fgets(Buffer, LARGE_BUFF_LENGTH, bfp);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blocks.c:175:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  175 |     fgets(Buffer, LARGE_BUFF_LENGTH, bfp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blocks.c:210:6: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  210 |      fgets(Buffer, LARGE_BUFF_LENGTH, bfp);     /* read the next line */
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blocks.c:212:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  212 |      { fgets(Buffer, LARGE_BUFF_LENGTH, bfp); }
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blocks.c:264:6: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  264 |      fgets(Buffer, LARGE_BUFF_LENGTH, bfp);     /* read the next line */
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blocks.c:266:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  266 |      { fgets(Buffer, LARGE_BUFF_LENGTH, bfp); }
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blocks.c:296:6: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  296 |      fgets(Buffer, LARGE_BUFF_LENGTH, bfp);     /* read the next line */
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blocks.c:298:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  298 |      { fgets(Buffer, LARGE_BUFF_LENGTH, bfp); }
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blocks.c: In function ‘next_cluster’:
blocks.c:490:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  490 |   fgets(BlockBuffer, BlockBufLength, bfp); /* read a line */
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blocks.c:628:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  628 |     fgets(BlockBuffer, BlockBufLength, bfp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o convert.o convert.c
convert.c: In function ‘gribskov_conversion_method’:
convert.c:926:16: warning: ‘fp’ is used uninitialized [-Wuninitialized]
  926 |   sij_matrix = load_qij(fp);
      |                ^~~~~~~~~~~~
convert.c:913:9: note: ‘fp’ was declared here
  913 |   FILE *fp;
      |         ^~
convert.c: In function ‘make_gribs’:
convert.c:708:57: warning: iteration 20 invokes undefined behavior [-Waggressive-loop-optimizations]
  708 |             temp[aa] += col->cnt[aa1] * subst->value[aa][aa1];
      |                                         ~~~~~~~~~~~~~~~~^~~~~
convert.c:706:26: note: within this loop
  706 |          for (aa1=1; aa1 <= 22 ; aa1++)
      |                      ~~~~^~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o errors.o errors.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o files.o files.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o frequency.o frequency.c
convert.c:708:57: warning: iteration 21 invokes undefined behavior [-Waggressive-loop-optimizations]
  708 |             temp[aa] += col->cnt[aa1] * subst->value[aa][aa1];
      |                                         ~~~~~~~~~~~~~~~~^~~~~
convert.c:703:21: note: within this loop
  703 |       for (aa=0; aa <= 22; aa++)
      |                  ~~~^~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o gcode.o gcode.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o lists.o lists.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o matrix.o matrix.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o memory.o memory.c
matrix.c: In function ‘read_matrix_header’:
matrix.c:102:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  102 |   fgets(Buffer, LARGE_BUFF_LENGTH, mfp);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrix.c:109:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  109 |     fgets(Buffer, LARGE_BUFF_LENGTH, mfp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrix.c:123:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |     fgets(Buffer, LARGE_BUFF_LENGTH, mfp);      /* read the next line */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrix.c:143:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  143 |     fgets(Buffer, LARGE_BUFF_LENGTH, mfp);      /* read the next line */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrix.c:158:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  158 |     fgets(Buffer, LARGE_BUFF_LENGTH, mfp); /* read the next line */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrix.c: In function ‘read_matrix_body’:
matrix.c:291:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  291 |   fgets(Buffer, LARGE_BUFF_LENGTH, mfp);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o options.o options.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o p2clib.o p2clib.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o pattern.o pattern.c
pattern.c: In function ‘scan_patterns’:
pattern.c:138:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  138 |       fgets(Buffer, LARGE_BUFF_LENGTH, pat_file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pattern.c: In function ‘pattern_matches’:
pattern.c:232:19: warning: ‘ok’ may be used uninitialized [-Wmaybe-uninitialized]
  232 |         for (x=0; !ok && x<num; x++) {
      |                   ^~~
pattern.c:199:11: note: ‘ok’ was declared here
  199 |   Boolean ok;
      |           ^~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o protomat.o protomat.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o scores.o scores.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o scoring.o scoring.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o sequences.o sequences.c
protomat.c: In function ‘getscore’:
protomat.c:231:7: warning: ‘fin’ may be used uninitialized [-Wmaybe-uninitialized]
  231 |    if (fin != NULL)
      |       ^
protomat.c:188:10: note: ‘fin’ was declared here
  188 |    FILE *fin, *fstp;
      |          ^~~
sequences.c: In function ‘read_sequence_header’:
sequences.c:314:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  314 |       fgets(lbuff, LARGE_BUFF_LENGTH, sfp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c:399:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  399 |       fgets(lbuff, LARGE_BUFF_LENGTH, sfp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c:405:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  405 |       fgets(lbuff, LARGE_BUFF_LENGTH, sfp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c:412:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  412 |       fgets(lbuff, LARGE_BUFF_LENGTH, sfp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c:413:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  413 |       fgets(lbuff, LARGE_BUFF_LENGTH, sfp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c:414:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  414 |       fgets(lbuff, LARGE_BUFF_LENGTH, sfp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c: In function ‘type_dbs’:
sequences.c:1011:6: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1011 |      fgets(line, LARGE_BUFF_LENGTH, fin);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c:1012:6: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1012 |      fgets(line, LARGE_BUFF_LENGTH, fin);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c: In function ‘seq_type_dbs’:
sequences.c:1114:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1114 |     fgets(Buffer, LARGE_BUFF_LENGTH, fin);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c:1120:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1120 |     fgets(Buffer, LARGE_BUFF_LENGTH, fin);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c:1124:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1124 |     fgets(Buffer, LARGE_BUFF_LENGTH, fin);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c:1125:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1125 |     fgets(Buffer, LARGE_BUFF_LENGTH, fin);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c:1126:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1126 |     fgets(Buffer, LARGE_BUFF_LENGTH, fin);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
scoring.c: In function ‘default_scoring_method’:
scoring.c:244:5: warning: ‘best_position’ may be used uninitialized [-Wmaybe-uninitialized]
  244 |     enter_score((int)max_seq_score, best_position, frame, matrix, seq);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
scoring.c:113:7: note: ‘best_position’ was declared here
  113 |   int best_position;
      |       ^~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o sl.o sl.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o strutil.o strutil.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o util.o util.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o version.o version.c
version.c: In function ‘print_version’:
version.c:178:18: warning: ‘   Version ’ directive writing 11 bytes into a region of size between 1 and 100 [-Wformat-overflow=]
  178 |               "%s   Version %s  %s%s\n",
      |                  ^~~~~~~~~~~
In file included from /usr/include/stdio.h:980,
                 from ../include/global.h:16,
                 from version.c:11:
In function ‘sprintf’,
    inlined from ‘print_version’ at version.c:177:7:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 15 and 312 bytes into a destination of size 100
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
version.c: In function ‘print_version’:
version.c:172:18: warning: ‘   Version ’ directive writing 11 bytes into a region of size between 1 and 100 [-Wformat-overflow=]
  172 |               "%s   Version %s (%s)  %s%s\n",
      |                  ^~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘print_version’ at version.c:171:7:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 18 and 414 bytes into a destination of size 100
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o blweight.o blweight.c
sl.c: In function ‘InsertSL’:
sl.c:311:7: warning: ‘q’ may be used uninitialized [-Wmaybe-uninitialized]
  311 |    if (q && (*compare)(q->key, key) == 0)     /* item is a duplicate */
      |       ^
sl.c:297:21: note: ‘q’ was declared here
  297 |   register SLNode p,q;
      |                     ^
blweight.c: In function ‘main’:
blweight.c:123:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |       fgets( bdbname, MAXNAME, stdin );
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blweight.c:136:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  136 |       fgets( conname, MAXNAME, stdin );
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blweight.c:153:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  153 |       fgets( ctemp, BLWEIGHT_CTEMPLEN, stdin );
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blweight.c:191:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  191 |       fgets( ctemp, BLWEIGHT_CTEMPLEN, stdin );
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sl.c: In function ‘SearchSL’:
sl.c:418:6: warning: ‘q’ may be used uninitialized [-Wmaybe-uninitialized]
  418 |   if (q == NULL || (*compare)(q->key, key) != 0)
      |      ^
sl.c:407:21: note: ‘q’ was declared here
  407 |   register SLNode p,q;
      |                     ^
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o blalign.o blalign.c
blalign.c: In function ‘main’:
blalign.c:122:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  122 |       fgets(bdbname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o bldist.o bldist.c
bldist.c: In function ‘main’:
bldist.c:73:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   73 |       fgets(bdbname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bldist.c:97:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |       fgets(sijname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bldist.c:130:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  130 |       fgets(outname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bldist.c:143:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  143 |       fgets(ctemp, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o blk2pssm.o blk2pssm.c
blk2pssm.c: In function ‘main’:
blk2pssm.c:91:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |       fgets(bdbname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blk2pssm.c:104:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  104 |       fgets(conname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blk2pssm.c:119:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  119 |       fgets(ctemp, BLK2PSSM_CTEMPLEN, stdin );
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blweight.c: In function ‘adjustweights’:
blweight.c:531:16: warning: ‘numinset’ may be used uninitialized [-Wmaybe-uninitialized]
  531 |      numinset  =  numinset + 1;
      |      ~~~~~~~~~~^~~~~~~~~~~~~~~
blweight.c:494:6: note: ‘numinset’ was declared here
  494 |  int numinset;                  /* number of elements in the set */
      |      ^~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o rank_matrix.o rank_matrix.c
rank_matrix.c: In function ‘main’:
rank_matrix.c:42:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   42 |       fgets(matname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o retblock.o retblock.c
retblock.c: In function ‘main’:
retblock.c:53:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   53 |       fgets(bdbname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
retblock.c:69:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |       fgets(acname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rank_matrix.c: In function ‘construct_rank_matrix’:
rank_matrix.c:119:17: warning: ‘rank_Qij’ may be used uninitialized [-Wmaybe-uninitialized]
  119 |                 copy_values_to_ranklist (aalist, original_aa, rank_Qij);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rank_matrix.c:92:27: note: ‘rank_Qij’ was declared here
   92 |         struct float_qij* rank_Qij;
      |                           ^~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o codehop.o codehop.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o htmlize-codehop.o htmlize-codehop.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o oligo_melt.o oligo_melt.c
htmlize-codehop.c: In function ‘main’:
htmlize-codehop.c:90:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   90 |          fgets(line, MAXLINE, fin); nline++;
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~
oligo_melt.c: In function ‘main’:
oligo_melt.c:78:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |       fgets(fname, 80, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~
htmlize-codehop.c:104:33: warning: ‘bfor’ may be used uninitialized [-Wmaybe-uninitialized]
  104 |          strcpy(brev->line, bfor->line);
      |                             ~~~~^~~~~~
htmlize-codehop.c:57:26: note: ‘bfor’ was declared here
   57 |    struct blist *blist, *bfor, *brev, *bcur;
      |                          ^~~~
htmlize-codehop.c:130:32: warning: ‘bcur’ may be used uninitialized [-Wmaybe-uninitialized]
  130 |          if (bcur->strand < 0) insert_oend(bcur->bolist, onew);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htmlize-codehop.c:57:40: note: ‘bcur’ was declared here
   57 |    struct blist *blist, *bfor, *brev, *bcur;
      |                                        ^~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o mablock.o mablock.c
mablock.c: In function ‘main’:
mablock.c:131:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |       fgets( bdbname, MAXNAME, stdin );
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mablock.c:161:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  161 |       fgets( OutName, MAXNAME, stdin );
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mablock.c:181:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  181 |       fgets( outtype, MABLOCK_OUTTYPELEN, stdin );
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mablock.c: In function ‘try_clustal’:
mablock.c:413:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  413 |       fgets(line, MAXLEN, ifp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~
mablock.c:504:4: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  504 |    system(line);
      |    ^~~~~~~~~~~~
mablock.c: In function ‘try_msf’:
mablock.c:639:4: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  639 |    system(line);
      |    ^~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o cobbler.o cobbler.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o addseqs.o addseqs.c
cobbler.c: In function ‘main’:
cobbler.c:259:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  259 |       fgets(cfname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
addseqs.c: In function ‘main’:
addseqs.c:153:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  153 |       fgets(infile, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
addseqs.c:167:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  167 |       fgets(seqsfile, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
addseqs.c:180:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  180 |       fgets(outfile, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mablock.c: In function ‘try_clustal’:
mablock.c:420:26: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size between 0 and 79 [-Wformat-overflow=]
  420 |    sprintf(tmp_name, "%s.%d", OutName, my_pid);
      |                          ^~
In file included from /usr/include/stdio.h:980,
                 from ../include/blocksprogs.h:3,
                 from mablock.c:43:
In function ‘sprintf’,
    inlined from ‘try_clustal’ at mablock.c:420:4:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 3 and 92 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
addseqs.c: In function ‘best_pos’:
addseqs.c:560:33: warning: ‘best_position’ may be used uninitialized [-Wmaybe-uninitialized]
  560 |   blist->endpos = best_position + blist->block->width - 1;
      |                   ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
addseqs.c:507:35: note: ‘best_position’ was declared here
  507 |   int scan_pos, seq_pos, mat_pos, best_position;
      |                                   ^~~~~~~~~~~~~
codehop.c: In function ‘find_oligos’:
codehop.c:896:52: warning: ‘oligo_clump’ may be used uninitialized [-Wmaybe-uninitialized]
  896 |                            oligo_clump->next_oligo = NULL;
      |                                                    ^
codehop.c:722:23: note: ‘oligo_clump’ was declared here
  722 |    struct oligo_list *oligo_clump, *oligo, *best_oligo, *prev_oligo, *tmp_oligo;
      |                       ^~~~~~~~~~~
addseqs.c: In function ‘fix_ac’:
addseqs.c:897:33: warning: ‘; distance from previous blo...’ directive writing 32 bytes into a region of size between 1 and 100 [-Wformat-overflow=]
  897 |    sprintf(blist->block->ac, "%s; distance from previous block=(%d,%d)",
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:980,
                 from ../include/blocksprogs.h:3,
                 from addseqs.c:55:
In function ‘sprintf’,
    inlined from ‘fix_ac’ at addseqs.c:897:4:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 37 and 156 bytes into a destination of size 100
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
codehop.c: In function ‘compute_max’:
codehop.c:1108:31: warning: ‘ic’ may be used uninitialized [-Wmaybe-uninitialized]
 1108 |                    ctemp[ic++]=  nt_btoa[res];
      |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~
codehop.c:1018:33: note: ‘ic’ was declared here
 1018 |    int pos, res, dna_res[3], i, ic, aapos, maxaa, maxcod;
      |                                 ^~
mablock.c: In function ‘main’:
mablock.c:152:25: warning: ‘; BLOCK’ directive writing 7 bytes into a region of size between 1 and 80 [-Wformat-overflow=]
  152 |    sprintf(Block_ID, "%s; BLOCK", Block_AC);
      |                         ^~~~~~~
In function ‘sprintf’,
    inlined from ‘main’ at mablock.c:152:4:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 8 and 87 bytes into a destination of size 80
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o fastaseqs.o fastaseqs.c
fastaseqs.c: In function ‘main’:
fastaseqs.c:42:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   42 |       fgets(infile, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fastaseqs.c:55:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   55 |       fgets(outfile, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o LAMA.o LAMA.c
LAMA.c: In function ‘read_a_prodom_entry’:
LAMA.c:1866:45: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
 1866 |          printf("Sequence %s has length of %d instead of expected %d\n",
      |                                            ~^
      |                                             |
      |                                             int
      |                                            %ld
 1867 |                 block->sequences[num_seqs].name, strlen(ptr),
      |                                                  ~~~~~~~~~~~
      |                                                  |
      |                                                  size_t {aka long unsigned int}
LAMA.c: In function ‘getargs’:
LAMA.c:403:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  403 |       fgets(bdbname[0], MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LAMA.c:408:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  408 |       fgets(bdbname[1], MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
LAMA.c:429:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  429 |       fgets(outname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o find_biassed_blocks.o find_biassed_blocks.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o makeblockmap.o makeblockmap.c
find_biassed_blocks.c: In function ‘read_a_prodom_entry’:
find_biassed_blocks.c:843:45: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
  843 |          printf("Sequence %s has length of %d instead of expected %d\n",
      |                                            ~^
      |                                             |
      |                                             int
      |                                            %ld
  844 |                 block->sequences[num_seqs].name, strlen(ptr),
      |                                                  ~~~~~~~~~~~
      |                                                  |
      |                                                  size_t {aka long unsigned int}
find_biassed_blocks.c: In function ‘getargs’:
find_biassed_blocks.c:293:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  293 |       fgets(bdbname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o prints2blocks.o prints2blocks.c
prints2blocks.c: In function ‘main’:
prints2blocks.c:66:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |       fgets(inpfname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
prints2blocks.c: In function ‘transform_a_prints_entry’:
prints2blocks.c:305:33: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  305 |       sprintf(block[i1].ac, "%s;", block[i1].number) ;
      |                                 ^
In file included from /usr/include/stdio.h:980,
                 from ../include/blocksprogs.h:3,
                 from prints2blocks.c:31:
In function ‘sprintf’,
    inlined from ‘transform_a_prints_entry’ at prints2blocks.c:305:7:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 2 and 101 bytes into a destination of size 100
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o lisblk.o lisblk.c
lisblk.c: In function ‘main’:
lisblk.c:56:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   56 |       fgets(lisfile, FNAMELEN, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lisblk.c:72:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |       fgets(blkfile, FNAMELEN, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lisblk.c:88:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   88 |             fgets(blkfile, FNAMELEN, stdin);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lisblk.c:101:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  101 |    fgets(Title, MAXLINE, flis);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~
lisblk.c:106:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  106 |    fgets(Pros, MAXLINE, flis);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~
find_biassed_blocks.c: In function ‘main’:
find_biassed_blocks.c:124:22: warning: ‘.biassed_blocks’ directive writing 15 bytes into a region of size between 1 and 100 [-Wformat-overflow=]
  124 |   sprintf(outname,"%s.biassed_blocks", bdbname) ;
      |                      ^~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:980,
                 from ../include/blocksprogs.h:3,
                 from find_biassed_blocks.c:46:
In function ‘sprintf’,
    inlined from ‘main’ at find_biassed_blocks.c:124:3:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 16 and 115 bytes into a destination of size 100
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:980,
                 from ../include/blocksprogs.h:3,
                 from lisblk.c:21:
In function ‘fgets’,
    inlined from ‘main’ at lisblk.c:106:4:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:202:12: warning: call to ‘*__fgets_chk’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning]
  202 |     return __fgets_chk_warn (__s, sz, __n, __stream);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o coduse.o coduse.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o narrow.o narrow.c
coduse.c: In function ‘main’:
coduse.c:68:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   68 |       fgets(infile, MAXNAME, stdin );
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
coduse.c:81:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |       fgets(organism, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
coduse.c:98:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   98 |       fgets(outfile, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o blk2slx.o blk2slx.c
narrow.c: In function ‘main’:
narrow.c:96:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   96 |       fgets(ctemp, 80, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~
narrow.c:107:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  107 |       fgets(chkname, 80, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~
narrow.c:210:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  210 |                 fgets(line, MAXLINE, chk);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:980,
                 from ../include/blocksprogs.h:3,
                 from coduse.c:17:
In function ‘fprintf’,
    inlined from ‘main’ at coduse.c:122:4:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘tot_codons’ may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
coduse.c: In function ‘main’:
coduse.c:60:11: note: ‘tot_codons’ was declared here
   60 |    double tot_codons;
      |           ^~~~~~~~~~
blk2slx.c: In function ‘main’:
blk2slx.c:38:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   38 |       fgets(bdbname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blk2slx.c:51:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   51 |       fgets(conname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o blkprob.o blkprob.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o interpro.o interpro.c
blkprob.c: In function ‘align_blocks’:
blkprob.c:2108:33: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=]
 2108 |                sprintf(ctemp, "%d", Results[t].offset+1);
      |                                ~^   ~~~~~~~~~~~~~~~~~~~
      |                                 |                    |
      |                                 int                  long int
      |                                %ld
blkprob.c: In function ‘main’:
blkprob.c:328:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  328 |       fgets(ctemp, FNAMELEN, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blkprob.c:356:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  356 |             fgets(homfile, FNAMELEN, stdin);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blkprob.c:365:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  365 |             fgets(datfile, FNAMELEN, stdin);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interpro.c: In function ‘main’:
interpro.c:97:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |       fgets(iprfile, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interpro.c:111:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  111 |       fgets(iprname, MAXAC, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
interpro.c: In function ‘get_iprs’:
interpro.c:361:13: warning: ‘flis’ may be used uninitialized [-Wmaybe-uninitialized]
  361 |          if (flis != NULL)
      |             ^
interpro.c:144:10: note: ‘flis’ was declared here
  144 |    FILE *flis, *fmot;
      |          ^~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o pssmdist.o pssmdist.c
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o pssmBL.o pssmBL.c
pssmdist.c: In function ‘main’:
pssmdist.c:116:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  116 |       fgets(mname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
pssmdist.c:129:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  129 |       fgets(oname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
pssmdist.c:141:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  141 |       fgets(fname, MAXNAME,stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~
pssmdist.c:158:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  158 |       fgets(ctemp, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
pssmdist.c:169:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  169 |       fgets(ctemp, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
pssmBL.c: In function ‘main’:
pssmBL.c:32:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   32 |       fgets(pssmname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pssmBL.c:45:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |       fgets(bdbname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pssmBL.c:58:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   58 |       fgets(conname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blkprob.c: In function ‘print_blurb’:
blkprob.c:568:29: warning: ‘blkprob.stp’ directive writing 11 bytes into a region of size between 1 and 160 [-Wformat-overflow=]
  568 |       {   sprintf(fname, "%sblkprob.stp", DatDir); }
      |                             ^~~~~~~~~~~
In file included from /usr/include/stdio.h:980,
                 from ../include/blocksprogs.h:3,
                 from blkprob.c:70:
In function ‘sprintf’,
    inlined from ‘print_blurb’ at blkprob.c:568:11:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 12 and 171 bytes into a destination of size 160
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o papssm.o papssm.c
papssm.c:105:9: warning: "FNAMELEN" redefined
  105 | #define FNAMELEN 80
      |         ^~~~~~~~
In file included from ../include/blocksprogs.h:21,
                 from papssm.c:102:
../include/protomat.h:61:9: note: this is the location of the previous definition
   61 | #define FNAMELEN             160       /* Max length of file name */
      |         ^~~~~~~~
papssm.c: In function ‘main’:
papssm.c:253:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  253 |       fgets(cfname, FNAMELEN, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blkprob.c: In function ‘read_tiles’:
blkprob.c:795:25: warning: ‘blksort.stn’ directive writing 11 bytes into a region of size between 1 and 160 [-Wformat-overflow=]
  795 |       sprintf(fname, "%sblksort.stn", DatDir);
      |                         ^~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘read_tiles’ at blkprob.c:795:7:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 12 and 171 bytes into a destination of size 160
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
blkprob.c: In function ‘read_repeats’:
blkprob.c:831:25: warning: ‘repeats.dat’ directive writing 11 bytes into a region of size between 1 and 160 [-Wformat-overflow=]
  831 |       sprintf(fname, "%srepeats.dat", DatDir);
      |                         ^~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘read_repeats’ at blkprob.c:831:7:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 12 and 171 bytes into a destination of size 160
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
blkprob.c: In function ‘read_bias’:
blkprob.c:864:25: warning: ‘blksort.bias’ directive writing 12 bytes into a region of size between 1 and 160 [-Wformat-overflow=]
  864 |       sprintf(fname, "%sblksort.bias", DatDir);
      |                         ^~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘read_bias’ at blkprob.c:864:7:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 13 and 172 bytes into a destination of size 160
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
pssmdist.c: In function ‘compute’:
pssmdist.c:245:26: warning: ‘minfirst’ may be used uninitialized [-Wmaybe-uninitialized]
  245 |   int x, xreport, score, minfirst, minlast, pflag, itemp;
      |                          ^~~~~~~~
pssmdist.c:245:36: warning: ‘minlast’ may be used uninitialized [-Wmaybe-uninitialized]
  245 |   int x, xreport, score, minfirst, minlast, pflag, itemp;
      |                                    ^~~~~~~
blkprob.c: In function ‘align_blocks’:
blkprob.c:2052:26: warning: ‘%ld’ directive writing between 1 and 20 bytes into a region of size 10 [-Wformat-overflow=]
 2052 |          sprintf(ctemp, "%ld", Results[ block->query_res ].offset + 1);
      |                          ^~~
blkprob.c:2052:25: note: directive argument in the range [-9223372036854775807, 9223372036854775807]
 2052 |          sprintf(ctemp, "%ld", Results[ block->query_res ].offset + 1);
      |                         ^~~~~
In function ‘sprintf’,
    inlined from ‘align_blocks’ at blkprob.c:2052:10:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 2 and 21 bytes into a destination of size 10
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:980,
                 from ../include/blocksprogs.h:3,
                 from pssmdist.c:72:
In function ‘fprintf’,
    inlined from ‘main’ at pssmdist.c:218:11:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘strength’ may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
pssmdist.c: In function ‘main’:
pssmdist.c:108:7: note: ‘strength’ was declared here
  108 |   int strength;
      |       ^~~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o matrix_logob.o matrix_logob.c
matrix_logob.c: In function ‘main’:
matrix_logob.c:171:18: warning: passing argument 1 of ‘sprintf’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  171 |          sprintf(line, "cp %s/colors %s", logodir, colors) ;
      |                  ^~~~
In file included from /usr/include/features.h:502,
                 from /usr/include/x86_64-linux-gnu/sys/types.h:25,
                 from matrix_logob.c:97:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:28:1: note: expected ‘char *’ but argument is of type ‘const char *’
   28 | __NTH (sprintf (char *__restrict __s, const char *__restrict __fmt, ...))
      | ^~~~~
matrix_logob.c:209:22: warning: passing argument 1 of ‘sprintf’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  209 |              sprintf(line, "cp \'colors.%s\' \'colors.%s\'", suffix, suffix2);
      |                      ^~~~
/usr/include/x86_64-linux-gnu/bits/stdio2.h:28:1: note: expected ‘char *’ but argument is of type ‘const char *’
   28 | __NTH (sprintf (char *__restrict __s, const char *__restrict __fmt, ...))
      | ^~~~~
matrix_logob.c:271:18: warning: passing argument 1 of ‘sprintf’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  271 |          sprintf(line, "%s/makelogob \'%s\' > /dev/null", logodir, suffix2) ;
      |                  ^~~~
/usr/include/x86_64-linux-gnu/bits/stdio2.h:28:1: note: expected ‘char *’ but argument is of type ‘const char *’
   28 | __NTH (sprintf (char *__restrict __s, const char *__restrict __fmt, ...))
      | ^~~~~
matrix_logob.c: In function ‘write_symvec’:
matrix_logob.c:458:24: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘int’ [-Wformat=]
  458 |       fprintf(out, "%*ld %*.0lf %*.*f % .1E\n",
      |                     ~~~^
      |                        |
      |                        long int
      |                     %*d
  459 |               nfield, pos+1, infofield, ntrue, infofield, infodecim,
      |                       ~~~~~
      |                          |
      |                          int
matrix_logob.c: In function ‘main’:
matrix_logob.c:172:10: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  172 |          system(line) ;
      |          ^~~~~~~~~~~~
matrix_logob.c:178:35: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  178 |    if (stat("wave", &status) < 0) system("touch wave") ;
      |                                   ^~~~~~~~~~~~~~~~~~~~
matrix_logob.c:179:36: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  179 |    if (stat("marks", &status) < 0) system("touch marks") ;
      |                                    ^~~~~~~~~~~~~~~~~~~~~
matrix_logob.c:210:14: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  210 |              system(line);
      |              ^~~~~~~~~~~~
matrix_logob.c:272:10: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  272 |          system(line) ;
      |          ^~~~~~~~~~~~
matrix_logob.c: In function ‘getargs’:
matrix_logob.c:335:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  335 |       fgets(bdbname, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrix_logob.c:351:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  351 |       fgets(blockAC, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrix_logob.c:360:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  360 |       fgets(suffix, MAXNAME, stdin);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrix_logob.c: In function ‘view_logo’:
matrix_logob.c:592:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  592 |       fgets(ans, 2, stdin) ;
      |       ^~~~~~~~~~~~~~~~~~~~
matrix_logob.c:598:13: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |             system(line) ;
      |             ^~~~~~~~~~~~
matrix_logob.c:602:13: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  602 |             system(line) ;
      |             ^~~~~~~~~~~~
In file included from /usr/include/stdio.h:980,
                 from ../include/blocksprogs.h:3,
                 from matrix_logob.c:99:
In function ‘printf’,
    inlined from ‘write_symvec’ at matrix_logob.c:489:7:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:86:10: warning: ‘e’ may be used uninitialized [-Wmaybe-uninitialized]
   86 |   return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ());
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrix_logob.c: In function ‘write_symvec’:
matrix_logob.c:399:16: note: ‘e’ was declared here
  399 |    double ln2, e, r, hmax, ntrue, avarhnb, dtemp;
      |                ^
In function ‘printf’,
    inlined from ‘write_symvec’ at matrix_logob.c:489:7:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:86:10: warning: ‘avarhnb’ may be used uninitialized [-Wmaybe-uninitialized]
   86 |   return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ());
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrix_logob.c: In function ‘write_symvec’:
matrix_logob.c:399:35: note: ‘avarhnb’ was declared here
  399 |    double ln2, e, r, hmax, ntrue, avarhnb, dtemp;
      |                                   ^~~~~~~
/usr/bin/gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/blimps-3.9+ds-1 -Wuninitialized -O2  -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=3  -c -o makelogob.o makelogob.c
makelogob.c:2772:1: error: return type defaults to ‘int’ [-Wimplicit-int]
 2772 | main(argc, argv)
      | ^~~~
makelogob.c: In function ‘themain’:
makelogob.c:2482:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     fscanf(symvec->f, "%ld%*[^\n]", &symbols);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:2535:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |     fscanf(symvec->f, "%ld%ld%lg%lg%*[^\n]", &V.position_, &nl, &rsl, &rsvar);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:2544:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2544 |       fscanf(symvec->f, "%c%ld%*[^\n]", &map[b].b, &map[b].n);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c: In function ‘readparameters’:
makelogob.c:1780:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1780 |     fscanf(theplace->f, "%ld%ld%*[^\n]", lowest, highest);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1788:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1788 |     fscanf(theplace->f, "%ld%*[^\n]", bar);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1796:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1796 |     fscanf(theplace->f, "%lg%lg%*[^\n]", xcorner, ycorner);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1804:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1804 |     fscanf(theplace->f, "%lg%*[^\n]", rotation);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1821:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1821 |     fscanf(theplace->f, "%lg%*[^\n]", charwidth);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1833:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1833 |     fscanf(theplace->f, "%lg%lg%*[^\n]", barheight, barwidth);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1849:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1849 |     fscanf(theplace->f, "%lg%*[^\n]", barbits);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1873:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1873 |     fscanf(theplace->f, "%lg%*[^\n]", Ibeamfraction);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1885:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1885 |     fscanf(theplace->f, "%*[^\n]");
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1897:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     fscanf(theplace->f, "%*[^\n]");
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1909:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1909 |     fscanf(theplace->f, "%*[^\n]");
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1921:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1921 |     fscanf(theplace->f, "%*[^\n]");
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1929:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1929 |     fscanf(theplace->f, "%ld%*[^\n]", stacksperline);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1941:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1941 |     fscanf(theplace->f, "%ld%*[^\n]", linesperpage);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1953:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     fscanf(theplace->f, "%lg%*[^\n]", linemove);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1969:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1969 |     fscanf(theplace->f, "%*[^\n]");
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1977:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1977 |     fscanf(theplace->f, "%lg%*[^\n]", shrink);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1999:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1999 |     fscanf(theplace->f, "%ld%*[^\n]", &numberstrings);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:2017:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2017 |     fscanf(theplace->f, "%lg%lg%lg%*[^\n]", &stringspot->x, &stringspot->y,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2018 |            &stringspot->s);
      |            ~~~~~~~~~~~~~~~
makelogob.c: In function ‘getstring’:
makelogob.c:653:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  653 |   fscanf(afile->f, "%*[^\n]");
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c: In function ‘readwaveparameters’:
makelogob.c:803:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  803 |     fscanf(afile->f, "%c%*[^\n]", &p->extreme);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:807:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  807 |     fscanf(afile->f, "%lg%*[^\n]", &p->wavelocation);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:809:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  809 |     fscanf(afile->f, "%lg%*[^\n]", &p->wavebit);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:811:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  811 |     fscanf(afile->f, "%lg%*[^\n]", &p->waveamplitude);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:813:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  813 |     fscanf(afile->f, "%lg%*[^\n]", &p->wavelength);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:824:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  824 |       fscanf(afile->f, "%lg%*[^\n]", &p->dash);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:829:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  829 |         fscanf(afile->f, "%lg%*[^\n]", &p->thickness);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c: In function ‘warnifsitesused’:
makelogob.c:2058:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2058 |   fscanf(symvec->f, "%*[^\n]");
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c: In function ‘copyaline’:
makelogob.c:769:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  769 |   fscanf(fin->f, "%*[^\n]");
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c: In function ‘p2’:
makelogob.c:1174:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1174 |       fscanf(LINK->colors->f, "%*[^\n]");
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c:1181:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1181 |     fscanf(LINK->colors->f, "%c%lg%lg%lg%*[^\n]", &LINK->symbol, &LINK->red,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1182 |            &LINK->green, &LINK->blue);
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~
makelogob.c: In function ‘getmark’:
makelogob.c:2225:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2225 |   fscanf(marks->f, "%c%lg%lg%lg%*[^\n]", marksymbol, markbase, markbits,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2226 |          markscale);
      |          ~~~~~~~~~~
make[2]: *** [<builtin>: makelogob.o] Error 1
make[2]: *** Waiting for unfinished jobs....
papssm.c:337:21: warning: ‘obs_freqs’ may be used uninitialized [-Wmaybe-uninitialized]
  337 |            matrix = make_steves(block, freqs, obs_freqs);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
papssm.c:244:21: note: ‘obs_freqs’ was declared here
  244 |    Matrix *matrix, *obs_freqs;
      |                     ^~~~~~~~~
papssm.c:342:9: warning: ‘matrix’ may be used uninitialized [-Wmaybe-uninitialized]
  342 |      if (matrix != NULL)
      |         ^
papssm.c:244:12: note: ‘matrix’ was declared here
  244 |    Matrix *matrix, *obs_freqs;
      |            ^~~~~~
make[2]: Leaving directory '/<<PKGBUILDDIR>>/blimps'
make[1]: *** [Makefile:17: blimps] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j4 "INSTALL=install --strip-program=true" returned exit code 2
make: *** [debian/rules:11: build] Error 25
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2024-05-09T00:02:20Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not removing build depends: as requested
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Type: binary
Build-Space: 13556
Build-Time: 12
Distribution: noble
Fail-Stage: build
Host Architecture: amd64
Install-Time: 4
Job: blimps_3.9+ds-1.dsc
Machine Architecture: amd64
Package: blimps
Package-Time: 16
Source-Version: 3.9+ds-1
Space: 13556
Status: attempted
Version: 3.9+ds-1
--------------------------------------------------------------------------------
Finished at 2024-05-09T00:02:20Z
Build needed 00:00:16, 13556k disk space
E: Build failure (dpkg-buildpackage died)
RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28296924
Scanning for processes to kill in build PACKAGEBUILD-28296924