https://launchpad.net/ubuntu/+archive/test-rebuild-20240502-noble-gcc/+build/28349465 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-021 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:55:42 UTC 2024 ppc64le Buildd toolchain package versions: launchpad-buildd_237~660~ubuntu20.04.1 python3-lpbuildd_237~660~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 12 May 09:57:01 ntpdate[1960]: adjust time server 10.211.37.1 offset 0.002125 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-28349465 --image-type chroot /home/buildd/filecache-default/d42c54d6e204d222772cc047f01d282d9c30a0e5 Creating target for build PACKAGEBUILD-28349465 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-28349465 Starting target for build PACKAGEBUILD-28349465 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-28349465 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble main' 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble main' 'deb http://ftpmaster.internal/ubuntu noble main universe' Overriding sources.list in build-PACKAGEBUILD-28349465 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-28349465 Adding trusted keys to build-PACKAGEBUILD-28349465 pub rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC] Key fingerprint = 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid Launchpad Toolchain builds RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-28349465 Updating target for build PACKAGEBUILD-28349465 Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble InRelease [23.6 kB] Get:2 http://ftpmaster.internal/ubuntu noble InRelease [256 kB] Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble InRelease [23.6 kB] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el Packages [20.6 kB] Get:5 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main Translation-en [14.9 kB] Get:6 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main ppc64el Packages [17.0 kB] Get:7 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main Translation-en [4996 B] Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el Packages [1335 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main Translation-en [513 kB] Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el Packages [14.8 MB] Get:11 http://ftpmaster.internal/ubuntu noble/universe Translation-en [5982 kB] Fetched 23.0 MB in 6s (4058 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: cpp-13 g++-13 g++-13-powerpc64le-linux-gnu libnsl-dev libperl5.36 libstdc++-13-dev libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-powerpc64le-linux-gnu cpp-14 cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu g++-13-powerpc64le-linux-gnu g++-14 g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-13-powerpc64le-linux-gnu gcc-14 gcc-14-base gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libstdc++-14-dev libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: advancecomp apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-powerpc64le-linux-gnu bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libitm1 libjansson4 libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblockfile-bin liblockfile1 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libnss-nis libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base pinentry-curses procps psmisc readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 175 upgraded, 31 newly installed, 14 to remove and 0 not upgraded. Need to get 418 MB of archives. After this operation, 1117 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:2 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el gcc-14-base ppc64el 14-20240429-1ubuntu1 [48.1 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1.1build1 [225 kB] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libgcc-s1 ppc64el 14-20240429-1ubuntu1 [39.2 kB] Get:5 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libstdc++6 ppc64el 14-20240429-1ubuntu1 [893 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl-dev ppc64el 1.3.0-3build3 [80.3 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl2 ppc64el 1.3.0-3build3 [48.9 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc3t64 ppc64el 1.3.4+ds-1.1build1 [102 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libgssapi-krb5-2 ppc64el 1.20.1-6ubuntu2 [185 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libkrb5-3 ppc64el 1.20.1-6ubuntu2 [432 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libk5crypto3 ppc64el 1.20.1-6ubuntu2 [108 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libkrb5support0 ppc64el 1.20.1-6ubuntu2 [38.6 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libacl1 ppc64el 2.3.2-1build1 [21.4 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libapparmor1 ppc64el 4.0.0-beta3-0ubuntu3 [55.1 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libcap-ng0 ppc64el 0.8.4-2build2 [16.3 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libaudit1 ppc64el 1:3.1.2-2.1build1 [52.9 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libblkid1 ppc64el 2.39.3-9ubuntu6 [155 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libcap2 ppc64el 1:2.66-5ubuntu2 [35.6 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4build1 [145 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt1 ppc64el 1:4.4.36-4build1 [110 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libgpg-error-l10n all 1.47-3build2 [8064 B] Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libgpg-error0 ppc64el 1.47-3build2 [88.4 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcrypt20 ppc64el 1.10.3-2build1 [748 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma5 ppc64el 5.6.1+really5.4.5-1 [160 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libzstd1 ppc64el 1.5.5+dfsg2-2build1 [397 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libkmod2 ppc64el 31+20240202-2ubuntu7 [64.5 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el liblz4-1 ppc64el 1.9.4-1build1 [105 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-8-0 ppc64el 10.42-4ubuntu2 [265 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libselinux1 ppc64el 3.5-2ubuntu2 [101 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el libmount1 ppc64el 2.39.3-9ubuntu6 [169 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libdb5.3t64 ppc64el 5.3.28+dfsg2-7 [868 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libgdbm6t64 ppc64el 1.23-5.1build1 [42.0 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libgdbm-compat4t64 ppc64el 1.23-5.1build1 [6982 B] Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libperl5.38t64 ppc64el 5.38.2-3.2build2 [4961 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el perl ppc64el 5.38.2-3.2build2 [231 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el perl-base ppc64el 5.38.2-3.2build2 [1916 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el liblocale-gettext-perl ppc64el 1.07-6ubuntu5 [16.1 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libtext-iconv-perl ppc64el 1.7-8build3 [13.7 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libtext-charwidth-perl ppc64el 0.04-11build3 [9536 B] Get:42 http://ftpmaster.internal/ubuntu noble/universe ppc64el libnss-nisplus ppc64el 1.3-5build1 [27.5 kB] Get:43 http://ftpmaster.internal/ubuntu noble/universe ppc64el libnss-nis ppc64el 3.1-0ubuntu7 [30.8 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu8 [21.3 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el rpcsvc-proto ppc64el 1.4.2-0ubuntu7 [82.4 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.39-0ubuntu8 [2104 kB] Get:47 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14-20240429-1ubuntu1 [90.7 MB] Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6 ppc64el 2.39-0ubuntu8 [3275 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-bin ppc64el 2.39-0ubuntu8 [751 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el openssl ppc64el 3.0.13-0ubuntu3 [1025 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libsystemd-shared ppc64el 255.4-1ubuntu8 [2351 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libcryptsetup12 ppc64el 2:2.7.0-1ubuntu4 [376 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu3 [2125 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el systemd-dev all 255.4-1ubuntu8 [104 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el systemd-sysv ppc64el 255.4-1ubuntu8 [11.9 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el systemd ppc64el 255.4-1ubuntu8 [3771 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el libsystemd0 ppc64el 255.4-1ubuntu8 [526 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam-modules-bin ppc64el 1.5.3-5ubuntu5 [57.9 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam-modules ppc64el 1.5.3-5ubuntu5 [320 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el libnettle8t64 ppc64el 3.9.1-2.2build1 [226 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el libhogweed6t64 ppc64el 3.9.1-2.2build1 [208 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el libp11-kit0 ppc64el 0.25.3-4ubuntu2 [312 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el libunistring5 ppc64el 1.1-2build1 [558 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el libgnutls30t64 ppc64el 3.8.3-1.1ubuntu3 [1055 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el libapt-pkg6.0t64 ppc64el 2.7.14build2 [1064 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el bzip2 ppc64el 1.0.8-5.1 [37.6 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-1.0 ppc64el 1.0.8-5.1 [48.7 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main ppc64el libudev1 ppc64el 255.4-1ubuntu8 [201 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main ppc64el libxxhash0 ppc64el 0.8.2-2build1 [31.3 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el zlib1g ppc64el 1:1.3.dfsg-3.1ubuntu2 [72.8 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main ppc64el libgmp10 ppc64el 2:6.3.0+dfsg-2ubuntu6 [282 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main ppc64el libffi8 ppc64el 3.4.6-1build1 [27.9 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el libidn2-0 ppc64el 2.3.7-2build1 [69.9 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el libtasn1-6 ppc64el 4.19.0-3build1 [55.1 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el libdebconfclient0 ppc64el 0.271ubuntu3 [11.3 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el base-passwd ppc64el 3.6.3build1 [53.0 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libassuan0 ppc64el 2.5.6-1build1 [43.3 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el libsqlite3-0 ppc64el 3.45.1-1ubuntu2 [804 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main ppc64el gpg ppc64el 2.4.4-2ubuntu17 [706 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el libreadline8t64 ppc64el 8.2-4build1 [182 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main ppc64el readline-common all 8.2-4build1 [56.5 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main ppc64el libncursesw6 ppc64el 6.4+20240113-1ubuntu2 [186 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el libtinfo6 ppc64el 6.4+20240113-1ubuntu2 [130 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main ppc64el gpg-agent ppc64el 2.4.4-2ubuntu17 [275 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el gpgconf ppc64el 2.4.4-2ubuntu17 [115 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el pinentry-curses ppc64el 1.2.1-3ubuntu5 [38.8 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main ppc64el init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main ppc64el libnpth0t64 ppc64el 1.6-3.1build1 [8914 B] Get:89 http://ftpmaster.internal/ubuntu noble/main ppc64el gpgv ppc64el 2.4.4-2ubuntu17 [198 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main ppc64el ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main ppc64el libseccomp2 ppc64el 2.5.5-1ubuntu3 [62.5 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main ppc64el apt-utils ppc64el 2.7.14build2 [226 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main ppc64el apt ppc64el 2.7.14build2 [1401 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main ppc64el debconf-i18n all 1.5.86ubuntu1 [205 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el debconf all 1.5.86ubuntu1 [124 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam0g ppc64el 1.5.3-5ubuntu5 [75.9 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main ppc64el libargon2-1 ppc64el 0~20190702+dfsg-4build1 [27.5 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.185-3ubuntu3 [182 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main ppc64el libjson-c5 ppc64el 0.17-1build1 [44.7 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main ppc64el libuuid1 ppc64el 2.39.3-9ubuntu6 [39.6 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main ppc64el libfdisk1 ppc64el 2.39.3-9ubuntu6 [171 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main ppc64el mount ppc64el 2.39.3-9ubuntu6 [125 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main ppc64el libcom-err2 ppc64el 1.47.0-2.4~exp1ubuntu4 [22.9 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main ppc64el libkeyutils1 ppc64el 1.6.3-3build1 [11.0 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main ppc64el linux-libc-dev ppc64el 6.8.0-31.31 [1588 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main ppc64el base-files ppc64el 13ubuntu10 [73.9 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main ppc64el debianutils ppc64el 5.17build1 [90.5 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main ppc64el bash ppc64el 5.2.21-2ubuntu4 [977 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main ppc64el bsdutils ppc64el 1:2.39.3-9ubuntu6 [99.1 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main ppc64el coreutils ppc64el 9.4-3ubuntu6 [1524 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main ppc64el tar ppc64el 1.35+dfsg-3build1 [309 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main ppc64el dpkg ppc64el 1.22.6ubuntu6 [1343 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main ppc64el dash ppc64el 0.5.12-6ubuntu5 [108 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main ppc64el diffutils ppc64el 1:3.10-1build1 [202 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main ppc64el findutils ppc64el 4.9.0-5build1 [330 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main ppc64el grep ppc64el 3.11-4build1 [174 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main ppc64el gzip ppc64el 1.12-1ubuntu3 [115 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main ppc64el hostname ppc64el 3.23+nmu2ubuntu2 [11.3 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main ppc64el login ppc64el 1:4.13+dfsg1-4ubuntu3 [205 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main ppc64el ncurses-bin ppc64el 6.4+20240113-1ubuntu2 [202 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main ppc64el sed ppc64el 4.9-2build1 [210 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main ppc64el util-linux ppc64el 2.39.3-9ubuntu6 [1195 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main ppc64el ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main ppc64el sysvinit-utils ppc64el 3.08-6ubuntu3 [35.8 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main ppc64el logsave ppc64el 1.47.0-2.4~exp1ubuntu4 [23.0 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main ppc64el libext2fs2t64 ppc64el 1.47.0-2.4~exp1ubuntu4 [270 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main ppc64el e2fsprogs ppc64el 1.47.0-2.4~exp1ubuntu4 [663 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main ppc64el optipng ppc64el 0.7.8+ds-1build2 [118 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main ppc64el libpng16-16t64 ppc64el 1.6.43-5build1 [242 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main ppc64el init ppc64el 1.66ubuntu1 [6190 B] Get:131 http://ftpmaster.internal/ubuntu noble/main ppc64el libsmartcols1 ppc64el 2.39.3-9ubuntu6 [79.3 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main ppc64el uuid-runtime ppc64el 2.39.3-9ubuntu6 [33.8 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main ppc64el libattr1 ppc64el 1:2.5.2-1build1 [12.6 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main ppc64el libmd0 ppc64el 1.1.0-2build1 [30.5 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam-runtime all 1.5.3-5ubuntu5 [40.8 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main ppc64el libsemanage-common all 3.5-1build5 [10.1 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main ppc64el libsepol2 ppc64el 3.5-2build1 [388 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main ppc64el libsemanage2 ppc64el 3.5-1build5 [115 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main ppc64el passwd ppc64el 1:4.13+dfsg1-4ubuntu3 [878 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main ppc64el libproc2-0 ppc64el 2:4.0.4-4ubuntu3 [68.7 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main ppc64el libss2 ppc64el 1.47.0-2.4~exp1ubuntu4 [18.0 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main ppc64el mawk ppc64el 1.3.4.20240123-1build1 [139 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main ppc64el procps ppc64el 2:4.0.4-4ubuntu3 [736 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main ppc64el sensible-utils all 0.0.22 [22.5 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main ppc64el ca-certificates all 20240203 [159 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main ppc64el krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main ppc64el tzdata all 2024a-2ubuntu1 [273 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main ppc64el bash-completion all 1:2.11-8 [180 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main ppc64el bsdextrautils ppc64el 2.39.3-9ubuntu6 [78.6 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main ppc64el libgpm2 ppc64el 1.20.7-11 [15.9 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main ppc64el libip4tc2 ppc64el 1.8.10-3ubuntu2 [27.0 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main ppc64el libjansson4 ppc64el 2.14-2build2 [40.4 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main ppc64el psmisc ppc64el 23.7-1build1 [192 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main ppc64el xz-utils ppc64el 5.6.1+really5.4.5-1 [276 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main ppc64el advancecomp ppc64el 2.5-1build1 [244 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main ppc64el libctf0 ppc64el 2.42-4ubuntu2 [112 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main ppc64el libctf-nobfd0 ppc64el 2.42-4ubuntu2 [112 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.42-4ubuntu2 [2473 kB] Get:159 http://ftpmaster.internal/ubuntu noble/main ppc64el libbinutils ppc64el 2.42-4ubuntu2 [699 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils ppc64el 2.42-4ubuntu2 [3080 B] Get:161 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils-common ppc64el 2.42-4ubuntu2 [217 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main ppc64el libsframe1 ppc64el 2.42-4ubuntu2 [16.0 kB] Get:163 http://ftpmaster.internal/ubuntu noble/main ppc64el libisl23 ppc64el 0.26-3build1 [886 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main ppc64el libmpfr6 ppc64el 4.2.1-1build1 [350 kB] Get:165 http://ftpmaster.internal/ubuntu noble/main ppc64el libmpc3 ppc64el 1.3.1-1build1 [62.1 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main ppc64el dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main ppc64el libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:168 http://ftpmaster.internal/ubuntu noble/main ppc64el patch ppc64el 2.7.6-7build3 [124 kB] Get:169 http://ftpmaster.internal/ubuntu noble/main ppc64el make ppc64el 4.3-4.1build2 [214 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main ppc64el lto-disabled-list all 47 [12.4 kB] Get:171 http://ftpmaster.internal/ubuntu noble/main ppc64el libfakeroot ppc64el 1.33-1 [34.4 kB] Get:172 http://ftpmaster.internal/ubuntu noble/main ppc64el fakeroot ppc64el 1.33-1 [69.2 kB] Get:173 http://ftpmaster.internal/ubuntu noble/main ppc64el liblockfile-bin ppc64el 1.17-1build3 [11.7 kB] Get:174 http://ftpmaster.internal/ubuntu noble/main ppc64el liblockfile1 ppc64el 1.17-1build3 [7692 B] Get:175 http://ftpmaster.internal/ubuntu noble/main ppc64el lockfile-progs ppc64el 0.1.19build2 [8768 B] Get:176 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main ppc64el g++ ppc64el 4:14-20240120-6ubuntu1 [1098 B] Get:177 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main ppc64el gcc ppc64el 4:14-20240120-6ubuntu1 [5008 B] Get:178 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main ppc64el cpp ppc64el 4:14-20240120-6ubuntu1 [22.5 kB] Get:179 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14-20240120-6ubuntu1 [5376 B] Get:180 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libcc1-0 ppc64el 14-20240429-1ubuntu1 [48.1 kB] Get:181 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240429-1ubuntu1 [161 kB] Get:182 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libitm1 ppc64el 14-20240429-1ubuntu1 [32.4 kB] Get:183 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libatomic1 ppc64el 14-20240429-1ubuntu1 [10.7 kB] Get:184 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libasan8 ppc64el 14-20240429-1ubuntu1 [2970 kB] Get:185 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el liblsan0 ppc64el 14-20240429-1ubuntu1 [1327 kB] Get:186 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el g++-13 ppc64el 13.2.0-24ubuntu1 [15.0 kB] Get:187 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el gcc-13 ppc64el 13.2.0-24ubuntu1 [484 kB] Get:188 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el cpp-13 ppc64el 13.2.0-24ubuntu1 [1040 B] Get:189 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-24ubuntu1 [10.7 MB] Get:190 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libubsan1 ppc64el 14-20240429-1ubuntu1 [1196 kB] Get:191 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libstdc++-13-dev ppc64el 13.2.0-24ubuntu1 [2559 kB] Get:192 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libquadmath0 ppc64el 14-20240429-1ubuntu1 [158 kB] Get:193 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libgcc-13-dev ppc64el 13.2.0-24ubuntu1 [1580 kB] Get:194 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libtsan2 ppc64el 14-20240429-1ubuntu1 [2709 kB] Get:195 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el gcc-13-base ppc64el 13.2.0-24ubuntu1 [49.4 kB] Get:196 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-24ubuntu1 [20.6 MB] Get:197 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el g++-13-powerpc64le-linux-gnu ppc64el 13.2.0-24ubuntu1 [12.2 MB] Get:198 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libgcc-14-dev ppc64el 14-20240429-1ubuntu1 [1626 kB] Get:199 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14-20240429-1ubuntu1 [102 MB] Get:200 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el libstdc++-14-dev ppc64el 14-20240429-1ubuntu1 [2644 kB] Get:201 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14-20240429-1ubuntu1 [99.7 MB] Get:202 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el gcc-14 ppc64el 14-20240429-1ubuntu1 [488 kB] Get:203 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el g++-14 ppc64el 14-20240429-1ubuntu1 [15.4 kB] Get:204 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14-20240120-6ubuntu1 [1232 B] Get:205 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14-20240120-6ubuntu1 [976 B] Get:206 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main ppc64el cpp-14 ppc64el 14-20240429-1ubuntu1 [1044 B] Preconfiguring packages ... Fetched 418 MB in 1min 41s (4141 kB/s) (Reading database ... 13550 files and directories currently installed.) Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1build1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... Preparing to unpack .../libtirpc-dev_1.3.4+ds-1.1build1_ppc64el.deb ... Unpacking libtirpc-dev:ppc64el (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... Preparing to unpack .../libnsl-dev_1.3.0-3build3_ppc64el.deb ... Unpacking libnsl-dev:ppc64el (1.3.0-3build3) over (1.3.0-2build2) ... Preparing to unpack .../libnsl2_1.3.0-3build3_ppc64el.deb ... Unpacking libnsl2:ppc64el (1.3.0-3build3) over (1.3.0-2build2) ... dpkg: libtirpc3:ppc64el: dependency problems, but removing anyway as you requested: libnss-nisplus:ppc64el depends on libtirpc3 (>= 1.0.2). (Reading database ... 13550 files and directories currently installed.) Removing libtirpc3:ppc64el (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3t64:ppc64el. 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Preparing to unpack .../liblzma5_5.6.1+really5.4.5-1_ppc64el.deb ... Unpacking liblzma5:ppc64el (5.6.1+really5.4.5-1) over (5.4.1-0.2) ... Setting up liblzma5:ppc64el (5.6.1+really5.4.5-1) ... (Reading database ... 13555 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.5+dfsg2-2build1_ppc64el.deb ... Unpacking libzstd1:ppc64el (1.5.5+dfsg2-2build1) over (1.5.5+dfsg2-1ubuntu2) ... Setting up libzstd1:ppc64el (1.5.5+dfsg2-2build1) ... (Reading database ... 13555 files and directories currently installed.) Preparing to unpack .../libkmod2_31+20240202-2ubuntu7_ppc64el.deb ... Unpacking libkmod2:ppc64el (31+20240202-2ubuntu7) over (30+20230519-1ubuntu3) ... Preparing to unpack .../liblz4-1_1.9.4-1build1_ppc64el.deb ... Unpacking liblz4-1:ppc64el (1.9.4-1build1) over (1.9.4-1) ... Setting up liblz4-1:ppc64el (1.9.4-1build1) ... (Reading database ... 13555 files and directories currently installed.) 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Preparing to unpack .../perl-modules-5.38_5.38.2-3.2build2_all.deb ... Unpacking perl-modules-5.38 (5.38.2-3.2build2) ... dpkg: libdb5.3:ppc64el: dependency problems, but removing anyway as you requested: libperl5.36:ppc64el depends on libdb5.3. libpam-modules:ppc64el depends on libdb5.3. apt-utils depends on libdb5.3. (Reading database ... 14968 files and directories currently installed.) Removing libdb5.3:ppc64el (5.3.28+dfsg2-2) ... Selecting previously unselected package libdb5.3t64:ppc64el. (Reading database ... 14962 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-7_ppc64el.deb ... Unpacking libdb5.3t64:ppc64el (5.3.28+dfsg2-7) ... dpkg: libgdbm6:ppc64el: dependency problems, but removing anyway as you requested: libperl5.36:ppc64el depends on libgdbm6 (>= 1.21). libgdbm-compat4:ppc64el depends on libgdbm6 (>= 1.16). (Reading database ... 14968 files and directories currently installed.) Removing libgdbm6:ppc64el (1.23-3) ... Selecting previously unselected package libgdbm6t64:ppc64el. (Reading database ... 14963 files and directories currently installed.) Preparing to unpack .../libgdbm6t64_1.23-5.1build1_ppc64el.deb ... Unpacking libgdbm6t64:ppc64el (1.23-5.1build1) ... dpkg: libgdbm-compat4:ppc64el: dependency problems, but removing anyway as you requested: libperl5.36:ppc64el depends on libgdbm-compat4 (>= 1.18-3). (Reading database ... 14969 files and directories currently installed.) Removing libgdbm-compat4:ppc64el (1.23-3) ... Selecting previously unselected package libgdbm-compat4t64:ppc64el. (Reading database ... 14964 files and directories currently installed.) Preparing to unpack .../libgdbm-compat4t64_1.23-5.1build1_ppc64el.deb ... Unpacking libgdbm-compat4t64:ppc64el (1.23-5.1build1) ... Selecting previously unselected package libperl5.38t64:ppc64el. Preparing to unpack .../libperl5.38t64_5.38.2-3.2build2_ppc64el.deb ... Unpacking libperl5.38t64:ppc64el (5.38.2-3.2build2) ... Preparing to unpack .../perl-base_5.38.2-3.2build2_ppc64el.deb ... Unpacking perl-base (5.38.2-3.2build2) over (5.36.0-9ubuntu1) ... Setting up perl-base (5.38.2-3.2build2) ... (Reading database ... 15496 files and directories currently installed.) Preparing to unpack .../0-liblocale-gettext-perl_1.07-6ubuntu5_ppc64el.deb ... Unpacking liblocale-gettext-perl (1.07-6ubuntu5) over (1.07-6) ... Preparing to unpack .../1-libtext-iconv-perl_1.7-8build3_ppc64el.deb ... Unpacking libtext-iconv-perl:ppc64el (1.7-8build3) over (1.7-8) ... Preparing to unpack .../2-libtext-charwidth-perl_0.04-11build3_ppc64el.deb ... Unpacking libtext-charwidth-perl:ppc64el (0.04-11build3) over (0.04-11) ... Preparing to unpack .../3-libnss-nisplus_1.3-5build1_ppc64el.deb ... Unpacking libnss-nisplus:ppc64el (1.3-5build1) over (1.3-0ubuntu6) ... Preparing to unpack .../4-libnss-nis_3.1-0ubuntu7_ppc64el.deb ... Unpacking libnss-nis:ppc64el (3.1-0ubuntu7) over (3.1-0ubuntu6) ... 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Unpacking openssl (3.0.13-0ubuntu3) over (3.0.10-1ubuntu2) ... Preparing to unpack .../libsystemd-shared_255.4-1ubuntu8_ppc64el.deb ... Unpacking libsystemd-shared:ppc64el (255.4-1ubuntu8) over (253.5-1ubuntu6) ... Preparing to unpack .../libcryptsetup12_2%3a2.7.0-1ubuntu4_ppc64el.deb ... Unpacking libcryptsetup12:ppc64el (2:2.7.0-1ubuntu4) over (2:2.6.1-4ubuntu3) ... dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: systemd depends on libssl3 (>= 3.0.0). (Reading database ... 15502 files and directories currently installed.) Removing libssl3:ppc64el (3.0.10-1ubuntu2) ... Selecting previously unselected package libssl3t64:ppc64el. (Reading database ... 15491 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.0.13-0ubuntu3_ppc64el.deb ... Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu3) ... Setting up libssl3t64:ppc64el (3.0.13-0ubuntu3) ... (Reading database ... 15504 files and directories currently installed.) 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Unpacking systemd (255.4-1ubuntu8) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd0_255.4-1ubuntu8_ppc64el.deb ... 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(Reading database ... 15639 files and directories currently installed.) Removing libhogweed6:ppc64el (3.9.1-2) ... dpkg: libnettle8:ppc64el: dependency problems, but removing anyway as you requested: libgnutls30:ppc64el depends on libnettle8 (>= 3.7~). Removing libnettle8:ppc64el (3.9.1-2) ... Selecting previously unselected package libnettle8t64:ppc64el. (Reading database ... 15627 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.9.1-2.2build1_ppc64el.deb ... Unpacking libnettle8t64:ppc64el (3.9.1-2.2build1) ... Setting up libnettle8t64:ppc64el (3.9.1-2.2build1) ... Selecting previously unselected package libhogweed6t64:ppc64el. (Reading database ... 15635 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.9.1-2.2build1_ppc64el.deb ... Unpacking libhogweed6t64:ppc64el (3.9.1-2.2build1) ... Setting up libhogweed6t64:ppc64el (3.9.1-2.2build1) ... (Reading database ... 15641 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-4ubuntu2_ppc64el.deb ... Unpacking libp11-kit0:ppc64el (0.25.3-4ubuntu2) over (0.25.0-4ubuntu1) ... Setting up libp11-kit0:ppc64el (0.25.3-4ubuntu2) ... Selecting previously unselected package libunistring5:ppc64el. (Reading database ... 15641 files and directories currently installed.) Preparing to unpack .../libunistring5_1.1-2build1_ppc64el.deb ... Unpacking libunistring5:ppc64el (1.1-2build1) ... Setting up libunistring5:ppc64el (1.1-2build1) ... dpkg: libgnutls30:ppc64el: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.7.5). (Reading database ... 15646 files and directories currently installed.) Removing libgnutls30:ppc64el (3.8.1-4ubuntu1) ... Selecting previously unselected package libgnutls30t64:ppc64el. (Reading database ... 15636 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu3_ppc64el.deb ... 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(both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') Preparing to unpack .../libbz2-1.0_1.0.8-5.1_ppc64el.deb ... Unpacking libbz2-1.0:ppc64el (1.0.8-5.1) over (1.0.8-5build1) ... Setting up libbz2-1.0:ppc64el (1.0.8-5.1) ... Selecting previously unselected package gcc-14-base:ppc64el. (Reading database ... 15649 files and directories currently installed.) 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(Reading database ... 15654 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2build1_ppc64el.deb ... Unpacking libxxhash0:ppc64el (0.8.2-2build1) over (0.8.1-1) ... Setting up libxxhash0:ppc64el (0.8.2-2build1) ... (Reading database ... 15654 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu2_ppc64el.deb ... Unpacking zlib1g:ppc64el (1:1.3.dfsg-3.1ubuntu2) over (1:1.2.13.dfsg-1ubuntu5) ... Setting up zlib1g:ppc64el (1:1.3.dfsg-3.1ubuntu2) ... (Reading database ... 15654 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2ubuntu6_ppc64el.deb ... Unpacking libgmp10:ppc64el (2:6.3.0+dfsg-2ubuntu6) over (2:6.3.0+dfsg-2ubuntu4) ... Setting up libgmp10:ppc64el (2:6.3.0+dfsg-2ubuntu6) ... (Reading database ... 15654 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.6-1build1_ppc64el.deb ... 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Preparing to unpack .../base-passwd_3.6.3build1_ppc64el.deb ... Unpacking base-passwd (3.6.3build1) over (3.6.1) ... Setting up base-passwd (3.6.3build1) ... (Reading database ... 15654 files and directories currently installed.) Preparing to unpack .../libassuan0_2.5.6-1build1_ppc64el.deb ... Unpacking libassuan0:ppc64el (2.5.6-1build1) over (2.5.6-1) ... Setting up libassuan0:ppc64el (2.5.6-1build1) ... (Reading database ... 15654 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.45.1-1ubuntu2_ppc64el.deb ... Unpacking libsqlite3-0:ppc64el (3.45.1-1ubuntu2) over (3.42.0-1) ... Preparing to unpack .../gpg_2.4.4-2ubuntu17_ppc64el.deb ... Unpacking gpg (2.4.4-2ubuntu17) over (2.2.40-1.1ubuntu1) ... dpkg: libreadline8:ppc64el: dependency problems, but removing anyway as you requested: gpgconf depends on libreadline8 (>= 6.0). (Reading database ... 15654 files and directories currently installed.) Removing libreadline8:ppc64el (8.2-1.3) ... Selecting previously unselected package libreadline8t64:ppc64el. (Reading database ... 15642 files and directories currently installed.) Preparing to unpack .../libreadline8t64_8.2-4build1_ppc64el.deb ... Adding 'diversion of /lib/powerpc64le-linux-gnu/libhistory.so.8 to /lib/powerpc64le-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/powerpc64le-linux-gnu/libhistory.so.8.2 to /lib/powerpc64le-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/powerpc64le-linux-gnu/libreadline.so.8 to /lib/powerpc64le-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/powerpc64le-linux-gnu/libreadline.so.8.2 to /lib/powerpc64le-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:ppc64el (8.2-4build1) ... Preparing to unpack .../readline-common_8.2-4build1_all.deb ... Unpacking readline-common (8.2-4build1) over (8.2-1.3) ... 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Setting up libctf-nobfd0:ppc64el (2.42-4ubuntu2) ... Setting up krb5-locales (1.20.1-6ubuntu2) ... Setting up libgomp1:ppc64el (14-20240429-1ubuntu1) ... Setting up bzip2 (1.0.8-5.1) ... Setting up libsframe1:ppc64el (2.42-4ubuntu2) ... Setting up libfakeroot:ppc64el (1.33-1) ... Setting up libjansson4:ppc64el (2.14-2build2) ... Setting up libkrb5support0:ppc64el (1.20.1-6ubuntu2) ... Setting up tzdata (2024a-2ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun May 12 09:59:27 UTC 2024. Universal Time is now: Sun May 12 09:59:27 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1) ... Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... Setting up gcc-13-base:ppc64el (13.2.0-24ubuntu1) ... Setting up make (4.3-4.1build2) ... Setting up libmpfr6:ppc64el (4.2.1-1build1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.6.1+really5.4.5-1) ... Setting up perl-modules-5.38 (5.38.2-3.2build2) ... 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Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up apt-utils (2.7.14build2) ... Setting up cpp-13 (13.2.0-24ubuntu1) ... Setting up debconf-i18n (1.5.86ubuntu1) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu4) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2build2) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up lockfile-progs (0.1.19build2) ... Setting up libgssapi-krb5-2:ppc64el (1.20.1-6ubuntu2) ... Setting up cpp-14-powerpc64le-linux-gnu (14-20240429-1ubuntu1) ... Setting up libdpkg-perl (1.22.6ubuntu6) ... Setting up cpp-14 (14-20240429-1ubuntu1) ... Setting up libreadline8t64:ppc64el (8.2-4build1) ... Setting up libgcc-13-dev:ppc64el (13.2.0-24ubuntu1) ... Setting up gpgconf (2.4.4-2ubuntu17) ... Setting up libc6-dev:ppc64el (2.39-0ubuntu8) ... 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Setting up libnsl2:ppc64el (1.3.0-3build3) ... Setting up g++-14 (14-20240429-1ubuntu1) ... Setting up g++-powerpc64le-linux-gnu (4:14-20240120-6ubuntu1) ... Setting up libnss-nisplus:ppc64el (1.3-5build1) ... Setting up g++-13-powerpc64le-linux-gnu (13.2.0-24ubuntu1) ... Setting up gcc (4:14-20240120-6ubuntu1) ... Setting up libnss-nis:ppc64el (3.1-0ubuntu7) ... Setting up g++ (4:14-20240120-6ubuntu1) ... Setting up libnsl-dev:ppc64el (1.3.0-3build3) ... Setting up g++-13 (13.2.0-24ubuntu1) ... Processing triggers for debianutils (5.17build1) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... (Reading database ... 16756 files and directories currently installed.) Purging configuration files for libssl3:ppc64el (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28349465 ppc64el noble -c chroot:build-PACKAGEBUILD-28349465 --arch=ppc64el --dist=noble --nolog libvcflib_1.0.9+dfsg1-3build1.dsc Initiating build PACKAGEBUILD-28349465 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:55:42 UTC 2024 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-ppc64el-021.buildd +==============================================================================+ | libvcflib 1.0.9+dfsg1-3build1 (ppc64el) Sun, 12 May 2024 09:59:37 +0000 | +==============================================================================+ Package: libvcflib Version: 1.0.9+dfsg1-3build1 Source Version: 1.0.9+dfsg1-3build1 Distribution: noble Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28349465/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libvcflib-uI0JiX/resolver-xgOfeD' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libvcflib_1.0.9+dfsg1-3build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libvcflib-uI0JiX/libvcflib-1.0.9+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/libvcflib-uI0JiX' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libhts-dev, libsmithwaterman-dev, libssw-dev, libfastahack-dev, libwfa2-dev, pkg-config, libgtest-dev, python3-dev, python3-pybind11, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libhts-dev, libsmithwaterman-dev, libssw-dev, libfastahack-dev, libwfa2-dev, pkg-config, libgtest-dev, python3-dev, python3-pybind11, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [478 B] Get:5 copy:/<>/apt_archive ./ Packages [547 B] Fetched 1982 B in 0s (66.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates cpp-13 debconf-i18n g++-13 g++-13-powerpc64le-linux-gnu krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36 libstdc++-13-dev libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base googletest groff-base intltool-debian libarchive-zip-perl libarchive13t64 libbrotli1 libbz2-dev libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdebhelper-perl libdeflate-dev libdeflate0 libdisorder-dev libdisorder0 libdw1t64 libelf1t64 libexpat1 libexpat1-dev libfastahack-dev libfastahack0 libfile-stripnondeterminism-perl libgtest-dev libhts-dev libhts3t64 libhtscodecs2 libicu74 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp25 libldap2 liblzma-dev libmagic-mgc libmagic1t64 libnghttp2-14 libpipeline1 libpkgconf3 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsmithwaterman-dev libsmithwaterman0 libssh-4 libssw-dev libssw0 libsub-override-perl libtabixpp-dev libtabixpp0t64 libtool libuchardet0 libuv1t64 libwfa2-0 libwfa2-dev libxml2 m4 man-db markdown media-types netbase pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev python3 python3-dev python3-minimal python3-pybind11 python3.12 python3.12-dev python3.12-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl pybind11-doc python3-doc python3-tk python3-venv python3.12-venv python3.12-doc binfmt-support Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl libeigen3-dev python3-numpy The following NEW packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base googletest groff-base intltool-debian libarchive-zip-perl libarchive13t64 libbrotli1 libbz2-dev libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdebhelper-perl libdeflate-dev libdeflate0 libdisorder-dev libdisorder0 libdw1t64 libelf1t64 libexpat1 libexpat1-dev libfastahack-dev libfastahack0 libfile-stripnondeterminism-perl libgtest-dev libhts-dev libhts3t64 libhtscodecs2 libicu74 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp25 libldap2 liblzma-dev libmagic-mgc libmagic1t64 libnghttp2-14 libpipeline1 libpkgconf3 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsmithwaterman-dev libsmithwaterman0 libssh-4 libssw-dev libssw0 libsub-override-perl libtabixpp-dev libtabixpp0t64 libtool libuchardet0 libuv1t64 libwfa2-0 libwfa2-dev libxml2 m4 man-db markdown media-types netbase pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev python3 python3-dev python3-minimal python3-pybind11 python3.12 python3.12-dev python3.12-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 96 newly installed, 0 to remove and 0 not upgraded. Need to get 63.3 MB of archives. After this operation, 240 MB of additional disk space will be used. 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http://ftpmaster.internal/ubuntu noble/main ppc64el python3 ppc64el 3.12.3-0ubuntu1 [24.1 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libelf1t64 ppc64el 0.190-1.1build4 [69.4 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libicu74 ppc64el 74.2-1ubuntu3 [11.3 MB] Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.3ubuntu3 [840 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libmagic-mgc ppc64el 1:5.45-3build1 [307 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libmagic1t64 ppc64el 1:5.45-3build1 [106 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el file ppc64el 1:5.45-3build1 [22.7 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el gettext-base ppc64el 0.21-14ubuntu2 [42.8 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libuchardet0 ppc64el 0.0.8-1build1 [79.3 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el groff-base ppc64el 1.23.0-3build2 [1112 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libnghttp2-14 ppc64el 1.59.0-1build4 [89.1 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libpipeline1 ppc64el 1.5.7-2 [26.9 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libpsl5t64 ppc64el 0.21.2-1.1build1 [59.1 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libuv1t64 ppc64el 1.48.0-1.1build1 [117 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el man-db ppc64el 2.12.0-4build2 [1281 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el m4 ppc64el 1.4.19-4build1 [278 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el autoconf all 2.71-3 [339 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el autotools-dev all 20220109.1 [44.9 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el automake all 1:1.16.5-1.3ubuntu1 [558 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el autopoint all 0.21-14ubuntu2 [422 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el libarchive13t64 ppc64el 3.7.2-2 [518 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libbrotli1 ppc64el 1.1.0-2build2 [410 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-5ubuntu3 [23.5 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-5ubuntu3 [68.0 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libldap2 ppc64el 2.6.7+dfsg-1~exp1ubuntu8 [233 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build7 [64.4 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libssh-4 ppc64el 0.10.6-2build2 [234 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libcurl4t64 ppc64el 8.5.0-2ubuntu10 [428 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libjsoncpp25 ppc64el 1.9.5-6build1 [89.0 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el librhash0 ppc64el 1.4.3-3build1 [147 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el cmake-data all 3.28.3-1build7 [2155 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el cmake ppc64el 3.28.3-1build7 [11.6 MB] Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el libtool all 2.4.7-7build1 [166 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el libsub-override-perl all 0.10-1 [10.0 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el libdw1t64 ppc64el 0.190-1.1build4 [301 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el debugedit ppc64el 1:5.0-5build2 [51.4 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el dwz ppc64el 0.15-1build6 [142 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el gettext ppc64el 0.21-14ubuntu2 [985 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el debhelper all 13.14.1ubuntu5 [869 kB] Get:57 http://ftpmaster.internal/ubuntu noble/universe ppc64el googletest all 1.14.0-1 [521 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-dev ppc64el 1.0.8-5.1 [51.2 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el libcurl3t64-gnutls ppc64el 8.5.0-2ubuntu10 [419 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el libcurl4-gnutls-dev ppc64el 8.5.0-2ubuntu10 [530 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1build1 [62.0 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate-dev ppc64el 1.19-1build1 [69.7 kB] Get:63 http://ftpmaster.internal/ubuntu noble/universe ppc64el libdisorder0 ppc64el 0.0.2+git20130809.8062ee1-4build1 [5046 B] Get:64 http://ftpmaster.internal/ubuntu noble/universe ppc64el libdisorder-dev ppc64el 0.0.2+git20130809.8062ee1-4build1 [4032 B] Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el libexpat1-dev ppc64el 2.6.1-2build1 [152 kB] Get:66 http://ftpmaster.internal/ubuntu noble/universe ppc64el libfastahack0 ppc64el 1.0.0+dfsg-11 [32.2 kB] Get:67 http://ftpmaster.internal/ubuntu noble/universe ppc64el libfastahack-dev ppc64el 1.0.0+dfsg-11 [32.8 kB] Get:68 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgtest-dev ppc64el 1.14.0-1 [280 kB] Get:69 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1build1 [110 kB] Get:70 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3t64 ppc64el 1.19+ds-1.1build3 [569 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma-dev ppc64el 5.6.1+really5.4.5-1 [207 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3.1ubuntu2 [902 kB] Get:73 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts-dev ppc64el 1.19+ds-1.1build3 [6343 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-sphinxdoc all 7.2.6-6 [149 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libpkgconf3 ppc64el 1.8.1-2build1 [37.4 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el libpython3.12t64 ppc64el 3.12.3-1 [2553 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main ppc64el libpython3.12-dev ppc64el 3.12.3-1 [6174 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el libpython3-dev ppc64el 3.12.3-0ubuntu1 [10.2 kB] Get:81 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsmithwaterman0 ppc64el 0.0+git20160702.2610e25-12 [46.6 kB] Get:82 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsmithwaterman-dev ppc64el 0.0+git20160702.2610e25-12 [52.8 kB] Get:83 http://ftpmaster.internal/ubuntu noble/universe ppc64el libssw0 ppc64el 1.1-14build1 [24.5 kB] Get:84 http://ftpmaster.internal/ubuntu noble/universe ppc64el libssw-dev ppc64el 1.1-14build1 [26.4 kB] Get:85 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtabixpp0t64 ppc64el 1.1.2-2.1build1 [10.4 kB] Get:86 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtabixpp-dev ppc64el 1.1.2-2.1build1 [8632 B] Get:87 http://ftpmaster.internal/ubuntu noble/universe ppc64el libwfa2-0 ppc64el 2.3.3-4 [79.3 kB] Get:88 http://ftpmaster.internal/ubuntu noble/universe ppc64el libwfa2-dev ppc64el 2.3.3-4 [103 kB] Get:89 http://ftpmaster.internal/ubuntu noble/universe ppc64el markdown all 1.0.1-12 [17.8 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf-bin ppc64el 1.8.1-2build1 [22.3 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf ppc64el 1.8.1-2build1 [16.8 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main ppc64el pkg-config ppc64el 1.8.1-2build1 [7264 B] Get:93 http://ftpmaster.internal/ubuntu noble/universe ppc64el pybind11-dev all 2.11.1-2 [159 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main ppc64el python3.12-dev ppc64el 3.12.3-1 [498 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dev ppc64el 3.12.3-0ubuntu1 [26.7 kB] Get:96 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pybind11 all 2.11.1-2 [167 kB] Preconfiguring packages ... Fetched 63.3 MB in 4s (18.0 MB/s) Selecting previously unselected package libpython3.12-minimal:ppc64el. (Reading database ... 16756 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.3-1_ppc64el.deb ... Unpacking libpython3.12-minimal:ppc64el (3.12.3-1) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../libexpat1_2.6.1-2build1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.6.1-2build1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.3-1_ppc64el.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Setting up libpython3.12-minimal:ppc64el (3.12.3-1) ... Setting up libexpat1:ppc64el (2.6.1-2build1) ... Setting up python3.12-minimal (3.12.3-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 17074 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.12.3-0ubuntu1_ppc64el.deb ... 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Unpacking libjs-sphinxdoc (7.2.6-6) ... Selecting previously unselected package libpkgconf3:ppc64el. Preparing to unpack .../66-libpkgconf3_1.8.1-2build1_ppc64el.deb ... Unpacking libpkgconf3:ppc64el (1.8.1-2build1) ... Selecting previously unselected package libpython3.12t64:ppc64el. Preparing to unpack .../67-libpython3.12t64_3.12.3-1_ppc64el.deb ... Unpacking libpython3.12t64:ppc64el (3.12.3-1) ... Selecting previously unselected package libpython3.12-dev:ppc64el. Preparing to unpack .../68-libpython3.12-dev_3.12.3-1_ppc64el.deb ... Unpacking libpython3.12-dev:ppc64el (3.12.3-1) ... Selecting previously unselected package libpython3-dev:ppc64el. Preparing to unpack .../69-libpython3-dev_3.12.3-0ubuntu1_ppc64el.deb ... Unpacking libpython3-dev:ppc64el (3.12.3-0ubuntu1) ... Selecting previously unselected package libsmithwaterman0:ppc64el. Preparing to unpack .../70-libsmithwaterman0_0.0+git20160702.2610e25-12_ppc64el.deb ... 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Unpacking libtabixpp-dev:ppc64el (1.1.2-2.1build1) ... Selecting previously unselected package libwfa2-0:ppc64el. Preparing to unpack .../76-libwfa2-0_2.3.3-4_ppc64el.deb ... Unpacking libwfa2-0:ppc64el (2.3.3-4) ... Selecting previously unselected package libwfa2-dev. Preparing to unpack .../77-libwfa2-dev_2.3.3-4_ppc64el.deb ... Unpacking libwfa2-dev (2.3.3-4) ... Selecting previously unselected package markdown. Preparing to unpack .../78-markdown_1.0.1-12_all.deb ... Unpacking markdown (1.0.1-12) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../79-pkgconf-bin_1.8.1-2build1_ppc64el.deb ... Unpacking pkgconf-bin (1.8.1-2build1) ... Selecting previously unselected package pkgconf:ppc64el. Preparing to unpack .../80-pkgconf_1.8.1-2build1_ppc64el.deb ... Unpacking pkgconf:ppc64el (1.8.1-2build1) ... Selecting previously unselected package pkg-config:ppc64el. Preparing to unpack .../81-pkg-config_1.8.1-2build1_ppc64el.deb ... 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Setting up media-types (10.1.0) ... Setting up libpipeline1:ppc64el (1.5.7-2) ... Setting up libdisorder0:ppc64el (0.0.2+git20130809.8062ee1-4build1) ... Setting up libwfa2-0:ppc64el (2.3.3-4) ... Setting up libmagic-mgc (1:5.45-3build1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.14.1ubuntu5) ... Setting up libbrotli1:ppc64el (1.1.0-2build2) ... Setting up libuv1t64:ppc64el (1.48.0-1.1build1) ... Setting up libmagic1t64:ppc64el (1:5.45-3build1) ... Setting up libsmithwaterman0:ppc64el (0.0+git20160702.2610e25-12) ... Setting up libpsl5t64:ppc64el (0.21.2-1.1build1) ... Setting up libnghttp2-14:ppc64el (1.59.0-1build4) ... Setting up libdeflate0:ppc64el (1.19-1build1) ... Setting up gettext-base (0.21-14ubuntu2) ... Setting up m4 (1.4.19-4build1) ... Setting up libwfa2-dev (2.3.3-4) ... Setting up file (1:5.45-3build1) ... Setting up googletest (1.14.0-1) ... Setting up libfastahack0:ppc64el (1.0.0+dfsg-11) ... Setting up libelf1t64:ppc64el (0.190-1.1build4) ... Setting up libdw1t64:ppc64el (0.190-1.1build4) ... Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg1-5ubuntu3) ... Setting up libfastahack-dev:ppc64el (1.0.0+dfsg-11) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:ppc64el (1.8.1-2build1) ... Setting up libexpat1-dev:ppc64el (2.6.1-2build1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build7) ... Setting up autopoint (0.21-14ubuntu2) ... Setting up libjsoncpp25:ppc64el (1.9.5-6build1) ... Setting up pkgconf-bin (1.8.1-2build1) ... Setting up libdisorder-dev:ppc64el (0.0.2+git20130809.8062ee1-4build1) ... Setting up libsasl2-2:ppc64el (2.1.28+dfsg1-5ubuntu3) ... Setting up libssh-4:ppc64el (0.10.6-2build2) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:ppc64el (5.6.1+really5.4.5-1) ... Setting up libicu74:ppc64el (74.2-1ubuntu3) ... Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3.1ubuntu2) ... Setting up dwz (0.15-1build6) ... Setting up librhash0:ppc64el (1.4.3-3build1) ... Setting up libuchardet0:ppc64el (0.0.8-1build1) ... Setting up debugedit (1:5.0-5build2) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up cmake-data (3.28.3-1build7) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libdeflate-dev:ppc64el (1.19-1build1) ... Setting up libssw0:ppc64el (1.1-14build1) ... Setting up libxml2:ppc64el (2.9.14+dfsg-1.3ubuntu3) ... Setting up libldap2:ppc64el (2.6.7+dfsg-1~exp1ubuntu8) ... Setting up markdown (1.0.1-12) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libbz2-dev:ppc64el (1.0.8-5.1) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14ubuntu2) ... Setting up libpython3.12-stdlib:ppc64el (3.12.3-1) ... Setting up libgtest-dev:ppc64el (1.14.0-1) ... Setting up libcurl4t64:ppc64el (8.5.0-2ubuntu10) ... Setting up libssw-dev:ppc64el (1.1-14build1) ... Setting up libtool (2.4.7-7build1) ... Setting up python3.12 (3.12.3-1) ... Setting up libcurl3t64-gnutls:ppc64el (8.5.0-2ubuntu10) ... Setting up libcurl4-gnutls-dev:ppc64el (8.5.0-2ubuntu10) ... Setting up pkgconf:ppc64el (1.8.1-2build1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libpython3.12t64:ppc64el (3.12.3-1) ... Setting up dh-autoreconf (20) ... Setting up pkg-config:ppc64el (1.8.1-2build1) ... Setting up libsmithwaterman-dev:ppc64el (0.0+git20160702.2610e25-12) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3build2) ... Setting up libhts3t64:ppc64el (1.19+ds-1.1build3) ... Setting up libarchive13t64:ppc64el (3.7.2-2) ... Setting up libpython3-stdlib:ppc64el (3.12.3-0ubuntu1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:ppc64el (1.19+ds-1.1build3) ... Setting up python3 (3.12.3-0ubuntu1) ... Setting up libpython3.12-dev:ppc64el (3.12.3-1) ... Setting up man-db (2.12.0-4build2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up python3.12-dev (3.12.3-1) ... Setting up libtabixpp0t64:ppc64el (1.1.2-2.1build1) ... Setting up cmake (3.28.3-1build7) ... Setting up libpython3-dev:ppc64el (3.12.3-0ubuntu1) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up pybind11-dev (2.11.1-2) ... Setting up python3-dev (3.12.3-0ubuntu1) ... Setting up libtabixpp-dev:ppc64el (1.1.2-2.1build1) ... Setting up python3-pybind11 (2.11.1-2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (255.4-1ubuntu8) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any-amd64 arm64 loong64 mips64el ppc64el s390x ia64 ppc64 riscv64 sparc64 alpha) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:55:42 UTC 2024 ppc64el (ppc64le) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-24ubuntu1 g++-14_14-20240429-1ubuntu1 gcc-13_13.2.0-24ubuntu1 gcc-14_14-20240429-1ubuntu1 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-24ubuntu1 libstdc++-14-dev_14-20240429-1ubuntu1 libstdc++6_14-20240429-1ubuntu1 linux-libc-dev_6.8.0-31.31 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13ubuntu10 base-passwd_3.6.3build1 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 binutils-powerpc64le-linux-gnu_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu6 bsdutils_1:2.39.3-9ubuntu6 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 cmake_3.28.3-1build7 cmake-data_3.28.3-1build7 coreutils_9.4-3ubuntu6 cpp_4:14-20240120-6ubuntu1 cpp-13_13.2.0-24ubuntu1 cpp-13-powerpc64le-linux-gnu_13.2.0-24ubuntu1 cpp-14_14-20240429-1ubuntu1 cpp-14-powerpc64le-linux-gnu_14-20240429-1ubuntu1 cpp-powerpc64le-linux-gnu_4:14-20240120-6ubuntu1 dash_0.5.12-6ubuntu5 debconf_1.5.86ubuntu1 debconf-i18n_1.5.86ubuntu1 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1build1 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu4 fakeroot_1.33-1 file_1:5.45-3build1 findutils_4.9.0-5build1 g++_4:14-20240120-6ubuntu1 g++-13_13.2.0-24ubuntu1 g++-13-powerpc64le-linux-gnu_13.2.0-24ubuntu1 g++-14_14-20240429-1ubuntu1 g++-14-powerpc64le-linux-gnu_14-20240429-1ubuntu1 g++-powerpc64le-linux-gnu_4:14-20240120-6ubuntu1 gcc_4:14-20240120-6ubuntu1 gcc-13_13.2.0-24ubuntu1 gcc-13-base_13.2.0-24ubuntu1 gcc-13-powerpc64le-linux-gnu_13.2.0-24ubuntu1 gcc-14_14-20240429-1ubuntu1 gcc-14-base_14-20240429-1ubuntu1 gcc-14-powerpc64le-linux-gnu_14-20240429-1ubuntu1 gcc-powerpc64le-linux-gnu_4:14-20240120-6ubuntu1 gettext_0.21-14ubuntu2 gettext-base_0.21-14ubuntu2 googletest_1.14.0-1 gpg_2.4.4-2ubuntu17 gpg-agent_2.4.4-2ubuntu17 gpgconf_2.4.4-2ubuntu17 gpgv_2.4.4-2ubuntu17 grep_3.11-4build1 groff-base_1.23.0-3build2 gzip_1.12-1ubuntu3 hostname_3.23+nmu2ubuntu2 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-6ubuntu2 libacl1_2.3.2-1build1 libapparmor1_4.0.0-beta3-0ubuntu3 libapt-pkg6.0t64_2.7.14build2 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.2-2 libargon2-1_0~20190702+dfsg-4build1 libasan8_14-20240429-1ubuntu1 libassuan0_2.5.6-1build1 libatomic1_14-20240429-1ubuntu1 libattr1_1:2.5.2-1build1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libbinutils_2.42-4ubuntu2 libblkid1_2.39.3-9ubuntu6 libbrotli1_1.1.0-2build2 libbz2-1.0_1.0.8-5.1 libbz2-dev_1.0.8-5.1 libc-bin_2.39-0ubuntu8 libc-dev-bin_2.39-0ubuntu8 libc6_2.39-0ubuntu8 libc6-dev_2.39-0ubuntu8 libcap-ng0_0.8.4-2build2 libcap2_1:2.66-5ubuntu2 libcc1-0_14-20240429-1ubuntu1 libcom-err2_1.47.0-2.4~exp1ubuntu4 libcrypt-dev_1:4.4.36-4build1 libcrypt1_1:4.4.36-4build1 libcryptsetup12_2:2.7.0-1ubuntu4 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libcurl3t64-gnutls_8.5.0-2ubuntu10 libcurl4-gnutls-dev_8.5.0-2ubuntu10 libcurl4t64_8.5.0-2ubuntu10 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libvcflib_1.0.9+dfsg1-3build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_fsom dpkg-source: info: applying use_debian_packaged_smithwaterman.patch dpkg-source: info: applying use_debian_packaged_fastahack.patch dpkg-source: info: applying use_debian_packaged_libssw.patch dpkg-source: info: applying shared_lib.patch dpkg-source: info: applying pkg-config.patch dpkg-source: info: applying tabix_linking dpkg-source: info: applying wfa2_linking Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28349465 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28349465 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-28349465 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libvcflib dpkg-buildpackage: info: source version 1.0.9+dfsg1-3build1 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean --buildsystem cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean || true make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=cmake debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean find . -name "*.o" -delete rm -f README.html build/ rm -rf contrib/filevercmp contrib/multichoose contrib/intervaltree make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --buildsystem cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' cp -a debian/ext/* contrib/ dh_auto_configure -- -DOPENMP=ON -DCMAKE_BUILD_RPATH_USE_ORIGIN=ON -DZIG=OFF -DWFA_GITMODULE=OFF -DHTSLIB_FOUND=ON -DTABIX_FOUND=ON cd obj-powerpc64le-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/powerpc64le-linux-gnu -DOPENMP=ON -DCMAKE_BUILD_RPATH_USE_ORIGIN=ON -DZIG=OFF -DWFA_GITMODULE=OFF -DHTSLIB_FOUND=ON -DTABIX_FOUND=ON .. -- The C compiler identification is GNU 14.0.1 -- The CXX compiler identification is GNU 14.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:98 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/lib/cmake/pybind11/pybind11Common.cmake:188 (include) /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:19 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12.3", minimum required is "3.6") -- Found PythonLibs: /usr/lib/powerpc64le-linux-gnu/libpython3.12.so -- Found pybind11: /usr/include (found version "2.11.1") -- Found BZip2: /usr/lib/powerpc64le-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Looking for lzma_auto_decoder in /usr/lib/powerpc64le-linux-gnu/liblzma.so -- Looking for lzma_auto_decoder in /usr/lib/powerpc64le-linux-gnu/liblzma.so - found -- Looking for lzma_easy_encoder in /usr/lib/powerpc64le-linux-gnu/liblzma.so -- Looking for lzma_easy_encoder in /usr/lib/powerpc64le-linux-gnu/liblzma.so - found -- Looking for lzma_lzma_preset in /usr/lib/powerpc64le-linux-gnu/liblzma.so -- Looking for lzma_lzma_preset in /usr/lib/powerpc64le-linux-gnu/liblzma.so - found -- Found LibLZMA: /usr/lib/powerpc64le-linux-gnu/liblzma.so (found version "5.4.5") -- Found ZLIB: /usr/lib/powerpc64le-linux-gnu/libz.so (found version "1.3") -- Found CURL: /usr/lib/powerpc64le-linux-gnu/libcurl.so (found version "8.5.0") -- -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Checking for module 'htslib' -- Found htslib, version 1.19 -- Checking for module 'tabixpp' -- Package 'tabixpp', required by 'virtual:world', not found -- Checking for module 'libsmithwaterman' -- Found libsmithwaterman, version 0.0 -- Checking for module 'libfastahack' -- Found libfastahack, version 0.0 -- WFA using include /usr/include/wfa2lib Pandoc needs to be installed to generate the man pages -- Configuring done (5.4s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-powerpc64le-linux-gnu make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build cd obj-powerpc64le-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-powerpc64le-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-powerpc64le-linux-gnu/CMakeFiles /<>/obj-powerpc64le-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcflib.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 1%] Building CXX object CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/vcf-wfa.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 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/<>/src/vcf-wfa.cpp [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/Variant.cpp.o [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/legacy.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/legacy.cpp.o -MF CMakeFiles/vcflib.dir/src/legacy.cpp.o.d -o CMakeFiles/vcflib.dir/src/legacy.cpp.o -c /<>/src/legacy.cpp /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/Variant.cpp.o -MF CMakeFiles/vcflib.dir/src/Variant.cpp.o.d -o CMakeFiles/vcflib.dir/src/Variant.cpp.o -c /<>/src/Variant.cpp In file included from /<>/src/vcf-c-api.cpp:9: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcf-wfa.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/legacy.cpp:12: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/Variant.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 3%] Building CXX object CMakeFiles/vcflib.dir/src/rnglib.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/rnglib.cpp.o -MF CMakeFiles/vcflib.dir/src/rnglib.cpp.o.d -o CMakeFiles/vcflib.dir/src/rnglib.cpp.o -c /<>/src/rnglib.cpp [ 3%] Building CXX object CMakeFiles/vcflib.dir/src/var.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/var.cpp.o -MF CMakeFiles/vcflib.dir/src/var.cpp.o.d -o CMakeFiles/vcflib.dir/src/var.cpp.o -c /<>/src/var.cpp [ 4%] Building CXX object CMakeFiles/vcflib.dir/src/pdflib.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/pdflib.cpp.o -MF CMakeFiles/vcflib.dir/src/pdflib.cpp.o.d -o CMakeFiles/vcflib.dir/src/pdflib.cpp.o -c /<>/src/pdflib.cpp [ 4%] Building CXX object CMakeFiles/vcflib.dir/src/cdflib.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/cdflib.cpp.o -MF CMakeFiles/vcflib.dir/src/cdflib.cpp.o.d -o CMakeFiles/vcflib.dir/src/cdflib.cpp.o -c /<>/src/cdflib.cpp [ 5%] Building CXX object CMakeFiles/vcflib.dir/src/split.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/split.cpp.o -MF CMakeFiles/vcflib.dir/src/split.cpp.o.d -o CMakeFiles/vcflib.dir/src/split.cpp.o -c /<>/src/split.cpp [ 6%] Building CXX object CMakeFiles/vcflib.dir/src/rkmh.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/rkmh.cpp.o -MF CMakeFiles/vcflib.dir/src/rkmh.cpp.o.d -o CMakeFiles/vcflib.dir/src/rkmh.cpp.o -c /<>/src/rkmh.cpp [ 6%] Building CXX object CMakeFiles/vcflib.dir/src/murmur3.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/murmur3.cpp.o -MF CMakeFiles/vcflib.dir/src/murmur3.cpp.o.d -o CMakeFiles/vcflib.dir/src/murmur3.cpp.o -c /<>/src/murmur3.cpp [ 7%] Building CXX object CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o -MF CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o.d -o CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o -c /<>/src/LeftAlign.cpp [ 7%] Building CXX object CMakeFiles/vcflib.dir/src/cigar.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/cigar.cpp.o -MF CMakeFiles/vcflib.dir/src/cigar.cpp.o.d -o CMakeFiles/vcflib.dir/src/cigar.cpp.o -c /<>/src/cigar.cpp [ 8%] Building CXX object CMakeFiles/vcflib.dir/src/allele.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/allele.cpp.o -MF CMakeFiles/vcflib.dir/src/allele.cpp.o.d -o CMakeFiles/vcflib.dir/src/allele.cpp.o -c /<>/src/allele.cpp [ 8%] Building C object CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o /usr/bin/cc -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o -MF CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o.d -o CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o -c /<>/contrib/filevercmp/filevercmp.c [ 9%] Building C object CMakeFiles/vcflib.dir/contrib/c-progress-bar/progress.c.o /usr/bin/cc -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/contrib/c-progress-bar/progress.c.o -MF CMakeFiles/vcflib.dir/contrib/c-progress-bar/progress.c.o.d -o CMakeFiles/vcflib.dir/contrib/c-progress-bar/progress.c.o -c /<>/contrib/c-progress-bar/progress.c /<>/contrib/c-progress-bar/progress.c: In function ‘print_timedelta’: /<>/contrib/c-progress-bar/progress.c:79:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 79 | fprintf(stderr,"%lluh %llum %llus ", hours, minutes, seconds); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/contrib/c-progress-bar/progress.c:79:34: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 79 | fprintf(stderr,"%lluh %llum %llus ", hours, minutes, seconds); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/contrib/c-progress-bar/progress.c:79:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 79 | fprintf(stderr,"%lluh %llum %llus ", hours, minutes, seconds); | ~~~^ ~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu /<>/contrib/c-progress-bar/progress.c:82:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 82 | fprintf(stderr,"%llum %02llus ", minutes, seconds); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/contrib/c-progress-bar/progress.c:82:36: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 82 | fprintf(stderr,"%llum %02llus ", minutes, seconds); | ~~~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %02lu /<>/contrib/c-progress-bar/progress.c:85:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 85 | fprintf(stderr,"%llu.%llus ", seconds, mseconds); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/contrib/c-progress-bar/progress.c:85:33: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 85 | fprintf(stderr,"%llu.%llus ", seconds, mseconds); | ~~~^ ~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu [ 9%] Linking CXX shared library libvcflib.so /usr/bin/cmake -E cmake_link_script CMakeFiles/vcflib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libvcflib.so.2 -o libvcflib.so.2 "CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o" CMakeFiles/vcflib.dir/src/legacy.cpp.o "CMakeFiles/vcflib.dir/src/vcf-wfa.cpp.o" CMakeFiles/vcflib.dir/src/Variant.cpp.o CMakeFiles/vcflib.dir/src/rnglib.cpp.o CMakeFiles/vcflib.dir/src/var.cpp.o CMakeFiles/vcflib.dir/src/pdflib.cpp.o CMakeFiles/vcflib.dir/src/cdflib.cpp.o CMakeFiles/vcflib.dir/src/split.cpp.o CMakeFiles/vcflib.dir/src/rkmh.cpp.o CMakeFiles/vcflib.dir/src/murmur3.cpp.o CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o CMakeFiles/vcflib.dir/src/cigar.cpp.o CMakeFiles/vcflib.dir/src/allele.cpp.o CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o 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Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/dumpContigsFromHeader.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/pVst.dir/DependInfo.cmake "--color=" cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/bFst.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfecho.dir/build.make CMakeFiles/vcfecho.dir/build make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/bFst.dir/build.make CMakeFiles/bFst.dir/build make -f CMakeFiles/pVst.dir/build.make CMakeFiles/pVst.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/dumpContigsFromHeader.dir/build.make CMakeFiles/dumpContigsFromHeader.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 9%] Building CXX object CMakeFiles/bFst.dir/src/bFst.cpp.o [ 10%] Building CXX object CMakeFiles/pVst.dir/src/pVst.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/bFst.dir/src/bFst.cpp.o -MF CMakeFiles/bFst.dir/src/bFst.cpp.o.d -o CMakeFiles/bFst.dir/src/bFst.cpp.o -c /<>/src/bFst.cpp /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/pVst.dir/src/pVst.cpp.o -MF CMakeFiles/pVst.dir/src/pVst.cpp.o.d -o CMakeFiles/pVst.dir/src/pVst.cpp.o -c /<>/src/pVst.cpp [ 10%] Building CXX object CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -MF CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o.d -o CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -c /<>/src/vcfecho.cpp [ 10%] Building CXX object CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -MF CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o.d -o CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -c /<>/src/dumpContigsFromHeader.cpp In file included from /<>/src/pVst.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/pVst.cpp: In function ‘void calc(copyNcounts*)’: /<>/src/pVst.cpp:191:24: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 191 | std::random_shuffle(d->total.begin(), d->total.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/algorithm:61, from /usr/include/smithwaterman/SmithWatermanGotoh.h:4, from /<>/src/Variant.h:29: /usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here 4491 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/vcfecho.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/dumpContigsFromHeader.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/bFst.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 11%] Linking CXX executable dumpContigsFromHeader /usr/bin/cmake -E cmake_link_script CMakeFiles/dumpContigsFromHeader.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -o dumpContigsFromHeader -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 12%] Linking CXX executable vcfecho /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfecho.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -o vcfecho -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 12%] Built target dumpContigsFromHeader make -f CMakeFiles/hapLrt.dir/build.make CMakeFiles/hapLrt.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/hapLrt.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/hapLrt.dir/build.make CMakeFiles/hapLrt.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 12%] Building CXX object CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -MF CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o.d -o CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -c /<>/src/hapLrt.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 12%] Built target vcfecho make -f CMakeFiles/popStats.dir/build.make CMakeFiles/popStats.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/popStats.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/popStats.dir/build.make CMakeFiles/popStats.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 13%] Building CXX object CMakeFiles/popStats.dir/src/popStats.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/popStats.dir/src/popStats.cpp.o -MF CMakeFiles/popStats.dir/src/popStats.cpp.o.d -o CMakeFiles/popStats.dir/src/popStats.cpp.o -c /<>/src/popStats.cpp [ 13%] Linking CXX executable pVst /usr/bin/cmake -E cmake_link_script CMakeFiles/pVst.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/pVst.dir/src/pVst.cpp.o -o pVst -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 14%] Linking CXX executable bFst /usr/bin/cmake -E cmake_link_script CMakeFiles/bFst.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/bFst.dir/src/bFst.cpp.o -o bFst -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/hapLrt.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/popStats.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 14%] Linking CXX executable popStats /usr/bin/cmake -E cmake_link_script CMakeFiles/popStats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/popStats.dir/src/popStats.cpp.o -o popStats -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 15%] Linking CXX executable hapLrt /usr/bin/cmake -E cmake_link_script CMakeFiles/hapLrt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -o hapLrt -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 15%] Built target bFst make -f CMakeFiles/wcFst.dir/build.make CMakeFiles/wcFst.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/wcFst.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/wcFst.dir/build.make CMakeFiles/wcFst.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 16%] Building CXX object CMakeFiles/wcFst.dir/src/wcFst.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/wcFst.dir/src/wcFst.cpp.o -MF CMakeFiles/wcFst.dir/src/wcFst.cpp.o.d -o CMakeFiles/wcFst.dir/src/wcFst.cpp.o -c /<>/src/wcFst.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 16%] Built target pVst make -f CMakeFiles/iHS.dir/build.make CMakeFiles/iHS.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/iHS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/iHS.dir/build.make CMakeFiles/iHS.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 16%] Building CXX object CMakeFiles/iHS.dir/src/iHS.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/iHS.dir/src/iHS.cpp.o -MF CMakeFiles/iHS.dir/src/iHS.cpp.o.d -o CMakeFiles/iHS.dir/src/iHS.cpp.o -c /<>/src/iHS.cpp In file included from /<>/src/wcFst.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/iHS.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 16%] Built target popStats make -f CMakeFiles/segmentFst.dir/build.make CMakeFiles/segmentFst.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/segmentFst.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/segmentFst.dir/build.make CMakeFiles/segmentFst.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 17%] Building CXX object CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o -MF CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o.d -o CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o -c /<>/src/segmentFst.cpp [ 18%] Linking CXX executable wcFst /usr/bin/cmake -E cmake_link_script CMakeFiles/wcFst.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/wcFst.dir/src/wcFst.cpp.o -o wcFst -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 18%] Linking CXX executable segmentFst /usr/bin/cmake -E cmake_link_script CMakeFiles/segmentFst.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o -o segmentFst -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 18%] Built target hapLrt make -f CMakeFiles/segmentIhs.dir/build.make CMakeFiles/segmentIhs.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> 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-fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o -MF CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o.d -o CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o -c /<>/src/segmentIhs.cpp [ 20%] Linking CXX executable iHS /usr/bin/cmake -E cmake_link_script CMakeFiles/iHS.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/iHS.dir/src/iHS.cpp.o -o iHS -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 20%] Built target segmentFst make -f CMakeFiles/genotypeSummary.dir/build.make CMakeFiles/genotypeSummary.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/genotypeSummary.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/genotypeSummary.dir/build.make CMakeFiles/genotypeSummary.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 20%] Building CXX object CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o -MF CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o.d -o CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o -c /<>/src/genotypeSummary.cpp [ 20%] Linking CXX executable segmentIhs /usr/bin/cmake -E cmake_link_script CMakeFiles/segmentIhs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects 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'/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/sequenceDiversity.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/sequenceDiversity.dir/build.make CMakeFiles/sequenceDiversity.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 21%] Building CXX object CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -MF CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o.d -o CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -c /<>/src/sequenceDiversity.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 21%] Built target segmentIhs make -f CMakeFiles/pFst.dir/build.make CMakeFiles/pFst.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/pFst.dir/DependInfo.cmake "--color=" In file included from /<>/src/genotypeSummary.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/pFst.dir/build.make CMakeFiles/pFst.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 21%] Building CXX object CMakeFiles/pFst.dir/src/pFst.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/pFst.dir/src/pFst.cpp.o -MF CMakeFiles/pFst.dir/src/pFst.cpp.o.d -o CMakeFiles/pFst.dir/src/pFst.cpp.o -c /<>/src/pFst.cpp In file included from /<>/src/sequenceDiversity.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/pFst.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 21%] Built target iHS make -f CMakeFiles/smoother.dir/build.make CMakeFiles/smoother.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/smoother.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/smoother.dir/build.make CMakeFiles/smoother.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 21%] Building CXX object CMakeFiles/smoother.dir/src/smoother.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/smoother.dir/src/smoother.cpp.o -MF CMakeFiles/smoother.dir/src/smoother.cpp.o.d -o CMakeFiles/smoother.dir/src/smoother.cpp.o -c /<>/src/smoother.cpp [ 22%] Linking CXX executable genotypeSummary /usr/bin/cmake -E cmake_link_script CMakeFiles/genotypeSummary.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o -o genotypeSummary -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 23%] Linking CXX executable sequenceDiversity /usr/bin/cmake -E cmake_link_script CMakeFiles/sequenceDiversity.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -o sequenceDiversity -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 24%] Linking CXX executable pFst /usr/bin/cmake -E cmake_link_script CMakeFiles/pFst.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/pFst.dir/src/pFst.cpp.o -o pFst -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 25%] Linking CXX executable smoother /usr/bin/cmake -E cmake_link_script CMakeFiles/smoother.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/smoother.dir/src/smoother.cpp.o -o smoother -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 25%] Built target genotypeSummary make -f CMakeFiles/vcfld.dir/build.make CMakeFiles/vcfld.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfld.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfld.dir/build.make CMakeFiles/vcfld.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 26%] Building CXX object CMakeFiles/vcfld.dir/src/vcfld.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfld.dir/src/vcfld.cpp.o -MF CMakeFiles/vcfld.dir/src/vcfld.cpp.o.d -o CMakeFiles/vcfld.dir/src/vcfld.cpp.o -c /<>/src/vcfld.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 26%] Built target smoother make -f CMakeFiles/plotHaps.dir/build.make CMakeFiles/plotHaps.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/plotHaps.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/plotHaps.dir/build.make CMakeFiles/plotHaps.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 27%] Building CXX object CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -MF CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o.d -o CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -c /<>/src/plotHaps.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 27%] Built target pFst make -f CMakeFiles/abba-baba.dir/build.make CMakeFiles/abba-baba.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/abba-baba.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/abba-baba.dir/build.make CMakeFiles/abba-baba.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 27%] Building CXX object CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o -MF CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o.d -o CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o -c /<>/src/abba-baba.cpp In file included from /<>/src/vcfld.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/plotHaps.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/abba-baba.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 27%] Built target sequenceDiversity make -f CMakeFiles/permuteGPAT++.dir/build.make CMakeFiles/permuteGPAT++.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/permuteGPAT++.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/permuteGPAT++.dir/build.make CMakeFiles/permuteGPAT++.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 28%] Building CXX object CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -MF CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o.d -o CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -c /<>/src/permuteGPAT++.cpp [ 29%] Linking CXX executable abba-baba /usr/bin/cmake -E cmake_link_script CMakeFiles/abba-baba.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now "CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o" -o abba-baba -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 29%] Linking CXX executable permuteGPAT++ /usr/bin/cmake -E cmake_link_script CMakeFiles/permuteGPAT++.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -o permuteGPAT++ -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 29%] Linking CXX executable plotHaps /usr/bin/cmake -E cmake_link_script CMakeFiles/plotHaps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -o plotHaps -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 29%] Linking CXX executable vcfld /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfld.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfld.dir/src/vcfld.cpp.o -o vcfld -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 29%] Built target permuteGPAT++ make -f CMakeFiles/permuteSmooth.dir/build.make CMakeFiles/permuteSmooth.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/permuteSmooth.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/permuteSmooth.dir/build.make CMakeFiles/permuteSmooth.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 30%] Building CXX object CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -MF CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o.d -o CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -c /<>/src/permuteSmooth.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 30%] Built target abba-baba make -f CMakeFiles/normalize-iHS.dir/build.make CMakeFiles/normalize-iHS.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/normalize-iHS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/normalize-iHS.dir/build.make CMakeFiles/normalize-iHS.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 30%] Building CXX object CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o -MF CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o.d -o CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o -c /<>/src/normalize-iHS.cpp [ 30%] Linking CXX executable permuteSmooth /usr/bin/cmake -E cmake_link_script CMakeFiles/permuteSmooth.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -o permuteSmooth -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 30%] Built target plotHaps make -f CMakeFiles/meltEHH.dir/build.make CMakeFiles/meltEHH.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/meltEHH.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/meltEHH.dir/build.make CMakeFiles/meltEHH.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 30%] Building CXX object CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -MF CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o.d -o CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -c /<>/src/meltEHH.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 30%] Built target permuteSmooth make -f CMakeFiles/vcfnullgenofields.dir/build.make CMakeFiles/vcfnullgenofields.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfnullgenofields.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfnullgenofields.dir/build.make CMakeFiles/vcfnullgenofields.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 31%] Building CXX object CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o -MF CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o.d -o CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o -c /<>/src/vcfnullgenofields.cpp [ 32%] Linking CXX executable normalize-iHS /usr/bin/cmake -E cmake_link_script CMakeFiles/normalize-iHS.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now "CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o" -o normalize-iHS -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 32%] Built target normalize-iHS make -f CMakeFiles/vcfaltcount.dir/build.make CMakeFiles/vcfaltcount.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfaltcount.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfaltcount.dir/build.make CMakeFiles/vcfaltcount.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 32%] Building CXX object CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -MF CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o.d -o CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -c /<>/src/vcfaltcount.cpp In file included from /<>/src/meltEHH.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 32%] Built target vcfld make -f CMakeFiles/vcfhetcount.dir/build.make CMakeFiles/vcfhetcount.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfhetcount.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfhetcount.dir/build.make CMakeFiles/vcfhetcount.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 32%] Building CXX object CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -MF CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o.d -o CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -c /<>/src/vcfhetcount.cpp In file included from /<>/src/vcfnullgenofields.cpp:12: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfaltcount.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 32%] Linking CXX executable vcfnullgenofields /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfnullgenofields.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o -o vcfnullgenofields -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfhetcount.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Linking CXX executable vcfaltcount /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfaltcount.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -o vcfaltcount -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 34%] Linking CXX executable meltEHH /usr/bin/cmake -E cmake_link_script CMakeFiles/meltEHH.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -o meltEHH -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 35%] Linking CXX executable vcfhetcount /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfhetcount.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -o vcfhetcount -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 35%] Built target vcfaltcount make -f CMakeFiles/vcfhethomratio.dir/build.make CMakeFiles/vcfhethomratio.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfhethomratio.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfhethomratio.dir/build.make CMakeFiles/vcfhethomratio.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 35%] Building CXX object CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -MF CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o.d -o CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -c /<>/src/vcfhethomratio.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 35%] Built target vcfnullgenofields make -f CMakeFiles/vcffilter.dir/build.make CMakeFiles/vcffilter.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcffilter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcffilter.dir/build.make CMakeFiles/vcffilter.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 35%] Building CXX object CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -MF CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o.d -o CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -c /<>/src/vcffilter.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 35%] Built target vcfhetcount make -f CMakeFiles/vcf2tsv.dir/build.make CMakeFiles/vcf2tsv.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcf2tsv.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcf2tsv.dir/build.make CMakeFiles/vcf2tsv.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 35%] Building CXX object CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -MF CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o.d -o CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -c /<>/src/vcf2tsv.cpp In file included from /<>/src/vcfhethomratio.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcffilter.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 36%] Linking CXX executable vcfhethomratio /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfhethomratio.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -o vcfhethomratio -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcf2tsv.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 36%] Built target meltEHH make -f CMakeFiles/vcfgenotypes.dir/build.make CMakeFiles/vcfgenotypes.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfgenotypes.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfgenotypes.dir/build.make CMakeFiles/vcfgenotypes.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 37%] Building CXX object CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -MF CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o.d -o CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -c /<>/src/vcfgenotypes.cpp [ 38%] Linking CXX executable vcffilter /usr/bin/cmake -E cmake_link_script CMakeFiles/vcffilter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -o vcffilter -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 39%] Linking CXX executable vcf2tsv /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2tsv.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -o vcf2tsv -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 39%] Built target vcfhethomratio make -f CMakeFiles/vcfannotategenotypes.dir/build.make CMakeFiles/vcfannotategenotypes.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfannotategenotypes.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfannotategenotypes.dir/build.make CMakeFiles/vcfannotategenotypes.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 40%] Building CXX object CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -MF CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o.d -o CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -c /<>/src/vcfannotategenotypes.cpp In file included from /<>/src/vcfgenotypes.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 40%] Linking CXX executable vcfgenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenotypes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -o vcfgenotypes -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfannotategenotypes.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 40%] Built target vcf2tsv make -f CMakeFiles/vcfcommonsamples.dir/build.make CMakeFiles/vcfcommonsamples.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcommonsamples.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcommonsamples.dir/build.make CMakeFiles/vcfcommonsamples.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 41%] Building CXX object CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -MF CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o.d -o CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -c /<>/src/vcfcommonsamples.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 41%] Built target vcfgenotypes make -f CMakeFiles/vcfremovesamples.dir/build.make CMakeFiles/vcfremovesamples.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfremovesamples.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfremovesamples.dir/build.make CMakeFiles/vcfremovesamples.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 41%] Building CXX object CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -MF CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o.d -o CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -c /<>/src/vcfremovesamples.cpp [ 41%] Linking CXX executable vcfannotategenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfannotategenotypes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -o vcfannotategenotypes -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfcommonsamples.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfremovesamples.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 42%] Linking CXX executable vcfcommonsamples /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcommonsamples.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -o vcfcommonsamples -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 42%] Built target vcffilter make -f CMakeFiles/vcfkeepsamples.dir/build.make CMakeFiles/vcfkeepsamples.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfkeepsamples.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfkeepsamples.dir/build.make CMakeFiles/vcfkeepsamples.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 43%] Building CXX object CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -MF CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o.d -o CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -c /<>/src/vcfkeepsamples.cpp [ 44%] Linking CXX executable vcfremovesamples /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremovesamples.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -o vcfremovesamples -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 44%] Built target vcfcommonsamples make -f CMakeFiles/vcfsamplenames.dir/build.make CMakeFiles/vcfsamplenames.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfsamplenames.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfsamplenames.dir/build.make CMakeFiles/vcfsamplenames.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 45%] Building CXX object CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -MF CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o.d -o CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -c /<>/src/vcfsamplenames.cpp In file included from /<>/src/vcfkeepsamples.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 45%] Built target vcfremovesamples make -f CMakeFiles/vcfgenotypecompare.dir/build.make CMakeFiles/vcfgenotypecompare.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfgenotypecompare.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfgenotypecompare.dir/build.make CMakeFiles/vcfgenotypecompare.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 46%] Building CXX object CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -MF CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o.d -o CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -c /<>/src/vcfgenotypecompare.cpp [ 46%] Linking CXX executable vcfkeepsamples /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepsamples.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -o vcfkeepsamples -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfsamplenames.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 46%] Built target vcfkeepsamples make -f CMakeFiles/vcffixup.dir/build.make CMakeFiles/vcffixup.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcffixup.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcffixup.dir/build.make CMakeFiles/vcffixup.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 46%] Building CXX object CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -MF CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o.d -o CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -c /<>/src/vcffixup.cpp [ 46%] Linking CXX executable vcfsamplenames /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsamplenames.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -o vcfsamplenames -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfgenotypecompare.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 46%] Built target vcfsamplenames make -f CMakeFiles/vcfclassify.dir/build.make CMakeFiles/vcfclassify.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfclassify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfclassify.dir/build.make CMakeFiles/vcfclassify.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 47%] Building CXX object CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -MF CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o.d -o CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -c /<>/src/vcfclassify.cpp In file included from /<>/src/vcffixup.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 47%] Linking CXX executable vcfgenotypecompare /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenotypecompare.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -o vcfgenotypecompare -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfclassify.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 48%] Linking CXX executable vcffixup /usr/bin/cmake -E cmake_link_script CMakeFiles/vcffixup.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -o vcffixup -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 48%] Linking CXX executable vcfclassify /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfclassify.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -o vcfclassify -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 48%] Built target vcfannotategenotypes make -f CMakeFiles/vcfsamplediff.dir/build.make CMakeFiles/vcfsamplediff.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfsamplediff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfsamplediff.dir/build.make CMakeFiles/vcfsamplediff.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -MF CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o.d -o CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -c /<>/src/vcfsamplediff.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 49%] Built target vcfclassify make -f CMakeFiles/vcfremoveaberrantgenotypes.dir/build.make CMakeFiles/vcfremoveaberrantgenotypes.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfremoveaberrantgenotypes.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfremoveaberrantgenotypes.dir/build.make CMakeFiles/vcfremoveaberrantgenotypes.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -MF CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o.d -o CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -c /<>/src/vcfremoveaberrantgenotypes.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 49%] Built target vcffixup make -f CMakeFiles/vcfrandom.dir/build.make CMakeFiles/vcfrandom.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfrandom.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfrandom.dir/build.make CMakeFiles/vcfrandom.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -MF CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o.d -o CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -c /<>/src/vcfrandom.cpp In file included from /<>/src/vcfsamplediff.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 49%] Linking CXX executable vcfsamplediff /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsamplediff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -o vcfsamplediff -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 49%] Built target vcfgenotypecompare make -f CMakeFiles/vcfparsealts.dir/build.make CMakeFiles/vcfparsealts.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfparsealts.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfparsealts.dir/build.make CMakeFiles/vcfparsealts.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 50%] Building CXX object CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -MF CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o.d -o CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -c /<>/src/vcfparsealts.cpp In file included from /<>/src/vcfremoveaberrantgenotypes.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfrandom.cpp:13: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /<>/src/vcfrandom.cpp:10: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 51%] Linking CXX executable vcfremoveaberrantgenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremoveaberrantgenotypes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -o vcfremoveaberrantgenotypes -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 52%] Linking CXX executable vcfrandom /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfrandom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -o vcfrandom -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfparsealts.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 52%] Built target vcfsamplediff make -f CMakeFiles/vcfstats.dir/build.make CMakeFiles/vcfstats.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfstats.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfstats.dir/build.make CMakeFiles/vcfstats.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 53%] Building CXX object CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -MF CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o.d -o CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -c /<>/src/vcfstats.cpp [ 53%] Linking CXX executable vcfparsealts /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfparsealts.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -o vcfparsealts -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 53%] Built target vcfremoveaberrantgenotypes make -f CMakeFiles/vcfflatten.dir/build.make CMakeFiles/vcfflatten.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfflatten.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfflatten.dir/build.make CMakeFiles/vcfflatten.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 54%] Building CXX object CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -MF CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o.d -o CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -c /<>/src/vcfflatten.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 54%] Built target vcfparsealts make -f CMakeFiles/vcfprimers.dir/build.make CMakeFiles/vcfprimers.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfprimers.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfprimers.dir/build.make CMakeFiles/vcfprimers.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -MF CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o.d -o CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -c /<>/src/vcfprimers.cpp In file included from /<>/src/vcfstats.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 55%] Built target vcfrandom make -f CMakeFiles/vcfnumalt.dir/build.make CMakeFiles/vcfnumalt.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfnumalt.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfnumalt.dir/build.make CMakeFiles/vcfnumalt.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 56%] Building CXX object CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -MF CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o.d -o CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -c /<>/src/vcfnumalt.cpp In file included from /<>/src/vcfflatten.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfprimers.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfnumalt.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 57%] Linking CXX executable vcfprimers /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfprimers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -o vcfprimers -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 57%] Linking CXX executable vcfstats /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfstats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -o vcfstats -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 57%] Linking CXX executable vcfnumalt /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfnumalt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -o vcfnumalt -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 57%] Built target vcfprimers make -f CMakeFiles/vcfcleancomplex.dir/build.make CMakeFiles/vcfcleancomplex.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcleancomplex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcleancomplex.dir/build.make CMakeFiles/vcfcleancomplex.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 58%] Building CXX object CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -MF CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o.d -o CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -c /<>/src/vcfcleancomplex.cpp [ 58%] Linking CXX executable vcfflatten /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfflatten.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -o vcfflatten -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 58%] Built target vcfnumalt make -f CMakeFiles/vcfintersect.dir/build.make CMakeFiles/vcfintersect.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfintersect.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfintersect.dir/build.make CMakeFiles/vcfintersect.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 58%] Building CXX object CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -MF CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o.d -o CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -c /<>/src/vcfintersect.cpp In file included from /<>/src/vcfcleancomplex.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 58%] Linking CXX executable vcfcleancomplex /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcleancomplex.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -o vcfcleancomplex -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfintersect.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 58%] Built target vcfflatten make -f CMakeFiles/vcfannotate.dir/build.make CMakeFiles/vcfannotate.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfannotate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfannotate.dir/build.make CMakeFiles/vcfannotate.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 59%] Building CXX object CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -MF CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o.d -o CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -c /<>/src/vcfannotate.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 59%] Built target vcfcleancomplex make -f CMakeFiles/vcfallelicprimitives.dir/build.make CMakeFiles/vcfallelicprimitives.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfallelicprimitives.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfallelicprimitives.dir/build.make CMakeFiles/vcfallelicprimitives.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 59%] Building CXX object CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -MF CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o.d -o CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -c /<>/src/vcfallelicprimitives.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 59%] Built target vcfstats make -f CMakeFiles/vcfwave.dir/build.make CMakeFiles/vcfwave.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfwave.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfwave.dir/build.make CMakeFiles/vcfwave.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 60%] Building CXX object CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o -MF CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o.d -o CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o -c /<>/src/vcfwave.cpp In file included from /<>/src/vcfannotate.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfallelicprimitives.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfwave.cpp:19: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /<>/src/vcfwave.cpp:11: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 60%] Linking CXX executable vcfannotate /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfannotate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -o vcfannotate -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 61%] Linking CXX executable vcfintersect /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfintersect.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -o vcfintersect -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 61%] Linking CXX executable vcfwave /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfwave.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o -o vcfwave -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 62%] Linking CXX executable vcfallelicprimitives /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfallelicprimitives.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -o vcfallelicprimitives -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 62%] Built target vcfannotate make -f CMakeFiles/vcfoverlay.dir/build.make CMakeFiles/vcfoverlay.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfoverlay.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfoverlay.dir/build.make CMakeFiles/vcfoverlay.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 63%] Building CXX object CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -MF CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o.d -o CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -c /<>/src/vcfoverlay.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 63%] Built target vcfintersect make -f CMakeFiles/vcfaddinfo.dir/build.make CMakeFiles/vcfaddinfo.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfaddinfo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfaddinfo.dir/build.make CMakeFiles/vcfaddinfo.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 63%] Building CXX object CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -MF CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o.d -o CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -c /<>/src/vcfaddinfo.cpp In file included from /<>/src/vcfoverlay.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfaddinfo.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 63%] Built target vcfwave make -f CMakeFiles/vcfkeepinfo.dir/build.make CMakeFiles/vcfkeepinfo.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfkeepinfo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfkeepinfo.dir/build.make CMakeFiles/vcfkeepinfo.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 63%] Building CXX object CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -MF CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o.d -o CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -c /<>/src/vcfkeepinfo.cpp [ 64%] Linking CXX executable vcfaddinfo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfaddinfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -o vcfaddinfo -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 64%] Linking CXX executable vcfoverlay /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfoverlay.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -o vcfoverlay -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 64%] Built target vcfallelicprimitives make -f CMakeFiles/vcfkeepgeno.dir/build.make CMakeFiles/vcfkeepgeno.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfkeepgeno.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfkeepgeno.dir/build.make CMakeFiles/vcfkeepgeno.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 64%] Building CXX object CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -MF CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o.d -o CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -c /<>/src/vcfkeepgeno.cpp In file included from /<>/src/vcfkeepinfo.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 64%] Built target vcfaddinfo make -f CMakeFiles/vcfafpath.dir/build.make CMakeFiles/vcfafpath.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfafpath.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfafpath.dir/build.make CMakeFiles/vcfafpath.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 64%] Building CXX object CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -MF CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o.d -o CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -c /<>/src/vcfafpath.cpp In file included from /<>/src/vcfkeepgeno.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 65%] Linking CXX executable vcfkeepinfo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepinfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -o vcfkeepinfo -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 65%] Built target vcfoverlay make -f CMakeFiles/vcfcountalleles.dir/build.make CMakeFiles/vcfcountalleles.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcountalleles.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcountalleles.dir/build.make CMakeFiles/vcfcountalleles.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 65%] Building CXX object CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -MF CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o.d -o CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -c /<>/src/vcfcountalleles.cpp In file included from /<>/src/vcfafpath.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 66%] Linking CXX executable vcfkeepgeno /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepgeno.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -o vcfkeepgeno -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 66%] Built target vcfkeepinfo make -f CMakeFiles/vcflength.dir/build.make CMakeFiles/vcflength.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcflength.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcflength.dir/build.make CMakeFiles/vcflength.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 67%] Building CXX object CMakeFiles/vcflength.dir/src/vcflength.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcflength.dir/src/vcflength.cpp.o -MF CMakeFiles/vcflength.dir/src/vcflength.cpp.o.d -o CMakeFiles/vcflength.dir/src/vcflength.cpp.o -c /<>/src/vcflength.cpp [ 68%] Linking CXX executable vcfafpath /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfafpath.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -o vcfafpath -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfcountalleles.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 68%] Built target vcfkeepgeno make -f CMakeFiles/vcfdistance.dir/build.make CMakeFiles/vcfdistance.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfdistance.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfdistance.dir/build.make CMakeFiles/vcfdistance.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 68%] Building CXX object CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -MF CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o.d -o CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -c /<>/src/vcfdistance.cpp [ 69%] Linking CXX executable vcfcountalleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcountalleles.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -o vcfcountalleles -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcflength.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 69%] Built target vcfcountalleles make -f CMakeFiles/vcfrandomsample.dir/build.make CMakeFiles/vcfrandomsample.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfrandomsample.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfrandomsample.dir/build.make CMakeFiles/vcfrandomsample.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 69%] Building CXX object CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -MF CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o.d -o CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -c /<>/src/vcfrandomsample.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 69%] Built target vcfafpath make -f CMakeFiles/vcfentropy.dir/build.make CMakeFiles/vcfentropy.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfentropy.dir/DependInfo.cmake "--color=" [ 69%] Linking CXX executable vcflength /usr/bin/cmake -E cmake_link_script CMakeFiles/vcflength.dir/link.txt --verbose=1 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfentropy.dir/build.make CMakeFiles/vcfentropy.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcflength.dir/src/vcflength.cpp.o -o vcflength -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 69%] Building CXX object CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -MF CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o.d -o CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -c /<>/src/vcfentropy.cpp In file included from /<>/src/vcfdistance.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 70%] Linking CXX executable vcfdistance /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfdistance.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -o vcfdistance -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfrandomsample.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 70%] Built target vcflength make -f CMakeFiles/vcfglxgt.dir/build.make CMakeFiles/vcfglxgt.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfglxgt.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfglxgt.dir/build.make CMakeFiles/vcfglxgt.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 71%] Building CXX object CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -MF CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o.d -o CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -c /<>/src/vcfglxgt.cpp In file included from /<>/src/vcfentropy.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 71%] Built target vcfdistance make -f CMakeFiles/vcfroc.dir/build.make CMakeFiles/vcfroc.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfroc.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfroc.dir/build.make CMakeFiles/vcfroc.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 71%] Building CXX object CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -MF CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o.d -o CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -c /<>/src/vcfroc.cpp [ 72%] Linking CXX executable vcfrandomsample /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfrandomsample.dir/link.txt --verbose=1 [ 73%] Linking CXX executable vcfentropy /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfentropy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -o vcfrandomsample -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -o vcfentropy -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfglxgt.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfroc.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 73%] Built target vcfrandomsample make -f CMakeFiles/vcfcheck.dir/build.make CMakeFiles/vcfcheck.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcheck.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcheck.dir/build.make CMakeFiles/vcfcheck.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 74%] Building CXX object CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -MF CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o.d -o CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -c /<>/src/vcfcheck.cpp [ 75%] Linking CXX executable vcfglxgt /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfglxgt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -o vcfglxgt -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 75%] Built target vcfentropy make -f CMakeFiles/vcfstreamsort.dir/build.make CMakeFiles/vcfstreamsort.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfstreamsort.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfstreamsort.dir/build.make CMakeFiles/vcfstreamsort.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 76%] Building CXX object CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -MF CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o.d -o CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -c /<>/src/vcfstreamsort.cpp In file included from /<>/src/vcfcheck.cpp:11: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfstreamsort.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 76%] Linking CXX executable vcfcheck /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcheck.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -o vcfcheck -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 76%] Built target vcfglxgt make -f CMakeFiles/vcfuniq.dir/build.make CMakeFiles/vcfuniq.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfuniq.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfuniq.dir/build.make CMakeFiles/vcfuniq.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 77%] Building CXX object CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -MF CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o.d -o CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -c /<>/src/vcfuniq.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 77%] Built target vcfcheck make -f CMakeFiles/vcfuniqalleles.dir/build.make CMakeFiles/vcfuniqalleles.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfuniqalleles.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfuniqalleles.dir/build.make CMakeFiles/vcfuniqalleles.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 78%] Building CXX object CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -MF CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o.d -o CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -c /<>/src/vcfuniqalleles.cpp [ 78%] Linking CXX executable vcfstreamsort /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfstreamsort.dir/link.txt --verbose=1 [ 79%] Linking CXX executable vcfroc /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfroc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -o vcfstreamsort -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -o vcfroc -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfuniq.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 79%] Linking CXX executable vcfuniq /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfuniq.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -o vcfuniq -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfuniqalleles.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 79%] Linking CXX executable vcfuniqalleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfuniqalleles.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -o vcfuniqalleles -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 79%] Built target vcfuniq make -f CMakeFiles/vcfremap.dir/build.make CMakeFiles/vcfremap.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfremap.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfremap.dir/build.make CMakeFiles/vcfremap.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 79%] Building CXX object CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -MF CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o.d -o CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -c /<>/src/vcfremap.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 79%] Built target vcfuniqalleles make -f CMakeFiles/vcf2fasta.dir/build.make CMakeFiles/vcf2fasta.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcf2fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcf2fasta.dir/build.make CMakeFiles/vcf2fasta.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 79%] Building CXX object CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -MF CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o.d -o CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -c /<>/src/vcf2fasta.cpp In file included from /<>/src/vcfremap.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 79%] Built target vcfstreamsort make -f CMakeFiles/vcfsitesummarize.dir/build.make CMakeFiles/vcfsitesummarize.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfsitesummarize.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfsitesummarize.dir/build.make CMakeFiles/vcfsitesummarize.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 80%] Building CXX object CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -MF CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o.d -o CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -c /<>/src/vcfsitesummarize.cpp In file included from /<>/src/vcf2fasta.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfsitesummarize.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 81%] Linking CXX executable vcfremap /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -o vcfremap -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 81%] Linking CXX executable vcfsitesummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsitesummarize.dir/link.txt --verbose=1 [ 82%] Linking CXX executable vcf2fasta /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2fasta.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -o vcfsitesummarize -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -o vcf2fasta -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 82%] Built target vcfroc make -f CMakeFiles/vcfbreakmulti.dir/build.make CMakeFiles/vcfbreakmulti.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfbreakmulti.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfbreakmulti.dir/build.make CMakeFiles/vcfbreakmulti.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 83%] Building CXX object CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -MF CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o.d -o CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -c /<>/src/vcfbreakmulti.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 83%] Built target vcfsitesummarize make -f CMakeFiles/vcfevenregions.dir/build.make CMakeFiles/vcfevenregions.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfevenregions.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfevenregions.dir/build.make CMakeFiles/vcfevenregions.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 83%] Building CXX object CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -MF CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o.d -o CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -c /<>/src/vcfevenregions.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 83%] Built target vcfremap make -f CMakeFiles/vcfcat.dir/build.make CMakeFiles/vcfcat.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcat.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcat.dir/build.make CMakeFiles/vcfcat.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 84%] Building CXX object CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -MF CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o.d -o CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -c /<>/src/vcfcat.cpp In file included from /<>/src/vcfbreakmulti.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfevenregions.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 84%] Linking CXX executable vcfbreakmulti /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfbreakmulti.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -o vcfbreakmulti -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfcat.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 85%] Linking CXX executable vcfevenregions /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfevenregions.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -o vcfevenregions -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 85%] Built target vcf2fasta make -f CMakeFiles/vcfgenosummarize.dir/build.make CMakeFiles/vcfgenosummarize.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfgenosummarize.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfgenosummarize.dir/build.make CMakeFiles/vcfgenosummarize.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 86%] Building CXX object CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -MF CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o.d -o CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -c /<>/src/vcfgenosummarize.cpp [ 86%] Linking CXX executable vcfcat /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -o vcfcat -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 86%] Built target vcfevenregions make -f CMakeFiles/vcfgenosamplenames.dir/build.make CMakeFiles/vcfgenosamplenames.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfgenosamplenames.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfgenosamplenames.dir/build.make CMakeFiles/vcfgenosamplenames.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 87%] Building CXX object CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -MF CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o.d -o CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -c /<>/src/vcfgenosamplenames.cpp In file included from /<>/src/vcfgenosummarize.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 87%] Built target vcfcat make -f CMakeFiles/vcfgeno2haplo.dir/build.make CMakeFiles/vcfgeno2haplo.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfgeno2haplo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfgeno2haplo.dir/build.make CMakeFiles/vcfgeno2haplo.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 88%] Building CXX object CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -MF CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o.d -o CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -c /<>/src/vcfgeno2haplo.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 88%] Built target vcfbreakmulti make -f CMakeFiles/vcfleftalign.dir/build.make CMakeFiles/vcfleftalign.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfleftalign.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfleftalign.dir/build.make CMakeFiles/vcfleftalign.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 89%] Building CXX object CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -MF CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o.d -o CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -c /<>/src/vcfleftalign.cpp [ 89%] Linking CXX executable vcfgenosummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenosummarize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -o vcfgenosummarize -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfgenosamplenames.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfgeno2haplo.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfleftalign.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 89%] Linking CXX executable vcfgenosamplenames /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenosamplenames.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -o vcfgenosamplenames -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 89%] Linking CXX executable vcfleftalign /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfleftalign.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -o vcfleftalign -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 89%] Built target vcfgenosummarize make -f CMakeFiles/vcfcombine.dir/build.make CMakeFiles/vcfcombine.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcombine.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcombine.dir/build.make CMakeFiles/vcfcombine.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 90%] Building CXX object CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -MF CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o.d -o CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -c /<>/src/vcfcombine.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 90%] Built target vcfgenosamplenames make -f CMakeFiles/vcfgeno2alleles.dir/build.make CMakeFiles/vcfgeno2alleles.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfgeno2alleles.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfgeno2alleles.dir/build.make CMakeFiles/vcfgeno2alleles.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 91%] Building CXX object CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -MF CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o.d -o CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -c /<>/src/vcfgeno2alleles.cpp [ 91%] Linking CXX executable vcfgeno2haplo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgeno2haplo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -o vcfgeno2haplo -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfcombine.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfgeno2alleles.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 91%] Built target vcfleftalign make -f CMakeFiles/vcfindex.dir/build.make CMakeFiles/vcfindex.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfindex.dir/build.make CMakeFiles/vcfindex.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 91%] Building CXX object CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -MF CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o.d -o CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -c /<>/src/vcfindex.cpp [ 91%] Linking CXX executable vcfgeno2alleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgeno2alleles.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -o vcfgeno2alleles -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 91%] Linking CXX executable vcfcombine /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcombine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -o vcfcombine -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 91%] Built target vcfgeno2alleles make -f CMakeFiles/vcf2dag.dir/build.make CMakeFiles/vcf2dag.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcf2dag.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcf2dag.dir/build.make CMakeFiles/vcf2dag.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 91%] Building CXX object CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -MF CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o.d -o CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -c /<>/src/vcf2dag.cpp In file included from /<>/src/vcfindex.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Linking CXX executable vcfindex /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfindex.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -o vcfindex -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcf2dag.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 92%] Built target vcfindex make -f CMakeFiles/vcfsample2info.dir/build.make CMakeFiles/vcfsample2info.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfsample2info.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfsample2info.dir/build.make CMakeFiles/vcfsample2info.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 92%] Building CXX object CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -MF CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o.d -o CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -c /<>/src/vcfsample2info.cpp [ 93%] Linking CXX executable vcf2dag /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2dag.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -o vcf2dag -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfsample2info.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 93%] Built target vcfcombine make -f CMakeFiles/vcfqual2info.dir/build.make CMakeFiles/vcfqual2info.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfqual2info.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfqual2info.dir/build.make CMakeFiles/vcfqual2info.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 93%] Building CXX object CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -MF CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o.d -o CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -c /<>/src/vcfqual2info.cpp [ 94%] Linking CXX executable vcfsample2info /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsample2info.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -o vcfsample2info -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 94%] Built target vcfgeno2haplo make -f CMakeFiles/vcfinfo2qual.dir/build.make CMakeFiles/vcfinfo2qual.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfinfo2qual.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfinfo2qual.dir/build.make CMakeFiles/vcfinfo2qual.dir/build make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 94%] Building CXX object CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -MF CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o.d -o CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -c /<>/src/vcfinfo2qual.cpp [ 94%] Built target vcf2dag make -f CMakeFiles/vcfglbound.dir/build.make CMakeFiles/vcfglbound.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfglbound.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfglbound.dir/build.make CMakeFiles/vcfglbound.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 95%] Building CXX object CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -MF CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o.d -o CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -c /<>/src/vcfglbound.cpp In file included from /<>/src/vcfqual2info.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfinfo2qual.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfglbound.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 95%] Built target vcfsample2info make -f CMakeFiles/vcfinfosummarize.dir/build.make CMakeFiles/vcfinfosummarize.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfinfosummarize.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfinfosummarize.dir/build.make CMakeFiles/vcfinfosummarize.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 95%] Building CXX object CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -MF CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o.d -o CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -c /<>/src/vcfinfosummarize.cpp [ 96%] Linking CXX executable vcfqual2info /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfqual2info.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -o vcfqual2info -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 97%] Linking CXX executable vcfinfo2qual /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfinfo2qual.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -o vcfinfo2qual -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 97%] Linking CXX executable vcfglbound /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfglbound.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -o vcfglbound -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 97%] Built target vcfqual2info make -f CMakeFiles/vcfcreatemulti.dir/build.make CMakeFiles/vcfcreatemulti.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcreatemulti.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcreatemulti.dir/build.make CMakeFiles/vcfcreatemulti.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 97%] Building CXX object CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -MF CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o.d -o CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -c /<>/src/vcfcreatemulti.cpp In file included from /<>/src/vcfinfosummarize.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 97%] Built target vcfinfo2qual make -f CMakeFiles/pyvcflib.dir/build.make CMakeFiles/pyvcflib.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/pyvcflib.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/pyvcflib.dir/build.make CMakeFiles/pyvcflib.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 98%] Building CXX object CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dpyvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/python3.12 -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -fvisibility=hidden -MD -MT CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o -MF CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o.d -o CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o -c /<>/src/pythonffi.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 98%] Built target vcfglbound [ 99%] Linking CXX executable vcfinfosummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfinfosummarize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -o vcfinfosummarize -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfcreatemulti.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/pythonffi.cpp:5: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 99%] Built target vcfinfosummarize [100%] Linking CXX executable vcfcreatemulti /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcreatemulti.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -o vcfcreatemulti -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [100%] Built target vcfcreatemulti [100%] Linking CXX shared module pyvcflib.cpython-312-powerpc64le-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/pyvcflib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -o pyvcflib.cpython-312-powerpc64le-linux-gnu.so CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o -Wl,-rpath,"\$ORIGIN:" libvcflib.so.2 -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 /usr/bin/strip /<>/obj-powerpc64le-linux-gnu/pyvcflib.cpython-312-powerpc64le-linux-gnu.so make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [100%] Built target pyvcflib make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-powerpc64le-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' markdown README.md > README.html make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' cp obj-powerpc64le-linux-gnu/CTestTestfile.cmake test/ ln -sf obj-powerpc64le-linux-gnu/ build cd test && ctest . Test project /<>/test Start 1: realign 1/9 Test #1: realign .......................... Passed 0.10 sec Start 2: pyvcflib 2/9 Test #2: pyvcflib ......................... Passed 0.10 sec Start 3: vcflib-api 3/9 Test #3: vcflib-api ....................... Passed 0.09 sec Start 4: vcf2tsv 4/9 Test #4: vcf2tsv .......................... Passed 0.11 sec Start 5: vcfallelicprimitives 5/9 Test #5: vcfallelicprimitives ............. Passed 1.01 sec Start 6: vcfwave 6/9 Test #6: vcfwave .......................... Passed 0.59 sec Start 7: vcffilter 7/9 Test #7: vcffilter ........................ Passed 0.21 sec Start 8: vcfnulldotslashdot 8/9 Test #8: vcfnulldotslashdot ............... Passed 0.11 sec Start 9: doc/vcfintersect 9/9 Test #9: doc/vcfintersect ................. Passed 0.09 sec 100% tests passed, 0 tests failed out of 9 Total Test time (real) = 2.43 sec cd .. && rm -f build make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake dh_auto_install -a -O--buildsystem=cmake cd obj-powerpc64le-linux-gnu && make -j4 install DESTDIR=/<>/libvcflib-1.0.9\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-powerpc64le-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/vcfecho -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfecho" to "" -- Installing: /<>/debian/tmp/usr/bin/dumpContigsFromHeader -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/dumpContigsFromHeader" to "" -- Installing: /<>/debian/tmp/usr/bin/bFst -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/bFst" to "" -- Installing: /<>/debian/tmp/usr/bin/pVst -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/pVst" to "" -- Installing: /<>/debian/tmp/usr/bin/hapLrt -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/hapLrt" to "" -- Installing: /<>/debian/tmp/usr/bin/popStats -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/popStats" to "" -- Installing: /<>/debian/tmp/usr/bin/wcFst -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/wcFst" to "" -- Installing: /<>/debian/tmp/usr/bin/iHS -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/iHS" to "" -- Installing: /<>/debian/tmp/usr/bin/segmentFst -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/segmentFst" to "" -- Installing: /<>/debian/tmp/usr/bin/segmentIhs -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/segmentIhs" to "" -- Installing: /<>/debian/tmp/usr/bin/genotypeSummary -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/genotypeSummary" to "" -- Installing: /<>/debian/tmp/usr/bin/sequenceDiversity -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/sequenceDiversity" to "" -- Installing: /<>/debian/tmp/usr/bin/pFst -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/pFst" to "" -- Installing: /<>/debian/tmp/usr/bin/smoother -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/smoother" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfld -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfld" to "" -- Installing: /<>/debian/tmp/usr/bin/plotHaps -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/plotHaps" to "" -- Installing: /<>/debian/tmp/usr/bin/abba-baba -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/abba-baba" to "" -- Installing: /<>/debian/tmp/usr/bin/permuteGPAT++ -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/permuteGPAT++" to "" -- Installing: /<>/debian/tmp/usr/bin/permuteSmooth -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/permuteSmooth" to "" -- Installing: /<>/debian/tmp/usr/bin/normalize-iHS -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/normalize-iHS" to "" -- Installing: /<>/debian/tmp/usr/bin/meltEHH -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/meltEHH" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfnullgenofields -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfnullgenofields" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfaltcount -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfaltcount" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfhetcount -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfhetcount" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfhethomratio -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfhethomratio" to "" -- Installing: /<>/debian/tmp/usr/bin/vcffilter -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcffilter" to "" -- Installing: /<>/debian/tmp/usr/bin/vcf2tsv -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcf2tsv" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenotypes -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfgenotypes" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfannotategenotypes -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfannotategenotypes" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcommonsamples -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfcommonsamples" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfremovesamples -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfremovesamples" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfkeepsamples -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfkeepsamples" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsamplenames -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfsamplenames" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenotypecompare -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfgenotypecompare" to "" -- Installing: /<>/debian/tmp/usr/bin/vcffixup -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcffixup" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfclassify -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfclassify" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsamplediff -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfsamplediff" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfremoveaberrantgenotypes -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfremoveaberrantgenotypes" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfrandom -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfrandom" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfparsealts -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfparsealts" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfstats -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfstats" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfflatten -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfflatten" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfprimers -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfprimers" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfnumalt -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfnumalt" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcleancomplex -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfcleancomplex" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfintersect -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfintersect" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfannotate -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfannotate" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfallelicprimitives -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfallelicprimitives" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfwave -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfwave" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfoverlay -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfoverlay" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfaddinfo -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfaddinfo" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfkeepinfo -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfkeepinfo" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfkeepgeno -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfkeepgeno" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfafpath -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfafpath" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcountalleles -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfcountalleles" to "" -- Installing: /<>/debian/tmp/usr/bin/vcflength -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcflength" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfdistance -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfdistance" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfrandomsample -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfrandomsample" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfentropy -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfentropy" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfglxgt -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfglxgt" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfroc -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfroc" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcheck -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfcheck" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfstreamsort -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfstreamsort" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfuniq -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfuniq" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfuniqalleles -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfuniqalleles" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfremap -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfremap" to "" -- Installing: /<>/debian/tmp/usr/bin/vcf2fasta -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcf2fasta" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsitesummarize -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfsitesummarize" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfbreakmulti -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfbreakmulti" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfevenregions -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfevenregions" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcat -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfcat" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenosummarize -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfgenosummarize" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenosamplenames -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfgenosamplenames" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgeno2haplo -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfgeno2haplo" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfleftalign -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfleftalign" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcombine -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfcombine" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgeno2alleles -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfgeno2alleles" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfindex -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfindex" to "" -- Installing: /<>/debian/tmp/usr/bin/vcf2dag -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcf2dag" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsample2info -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfsample2info" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfqual2info -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfqual2info" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfinfo2qual -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfinfo2qual" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfglbound -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfglbound" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfinfosummarize -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfinfosummarize" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcreatemulti -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/vcfcreatemulti" to "" -- Installing: /<>/debian/tmp/usr/bin/bed2region -- Installing: /<>/debian/tmp/usr/bin/bgziptabix -- Installing: /<>/debian/tmp/usr/bin/vcf2bed.py -- Installing: /<>/debian/tmp/usr/bin/vcf2sqlite.py -- Installing: /<>/debian/tmp/usr/bin/vcfbiallelic -- Installing: /<>/debian/tmp/usr/bin/vcfclearid -- Installing: /<>/debian/tmp/usr/bin/vcfclearinfo -- Installing: /<>/debian/tmp/usr/bin/vcfcomplex -- Installing: /<>/debian/tmp/usr/bin/vcffirstheader -- Installing: /<>/debian/tmp/usr/bin/vcfgtcompare.sh -- Installing: /<>/debian/tmp/usr/bin/vcfindelproximity -- Installing: /<>/debian/tmp/usr/bin/vcfindels -- Installing: /<>/debian/tmp/usr/bin/vcfjoincalls -- Installing: /<>/debian/tmp/usr/bin/vcfmultiallelic -- Installing: /<>/debian/tmp/usr/bin/vcfmultiway -- Installing: /<>/debian/tmp/usr/bin/vcfmultiwayscripts -- Installing: /<>/debian/tmp/usr/bin/vcfnobiallelicsnps -- Installing: /<>/debian/tmp/usr/bin/vcfnoindels -- Installing: /<>/debian/tmp/usr/bin/vcfnosnps -- Installing: /<>/debian/tmp/usr/bin/vcfnulldotslashdot -- Installing: /<>/debian/tmp/usr/bin/vcfplotaltdiscrepancy.r -- Installing: /<>/debian/tmp/usr/bin/vcfplotaltdiscrepancy.sh -- Installing: /<>/debian/tmp/usr/bin/vcfplotsitediscrepancy.r -- Installing: /<>/debian/tmp/usr/bin/vcfplottstv.sh -- Installing: /<>/debian/tmp/usr/bin/vcfprintaltdiscrepancy.r -- Installing: /<>/debian/tmp/usr/bin/vcfprintaltdiscrepancy.sh -- Installing: /<>/debian/tmp/usr/bin/vcfqualfilter -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce_and_cut -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce_pipe -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce_uncompressed -- Installing: /<>/debian/tmp/usr/bin/vcfremovenonATGC -- Installing: /<>/debian/tmp/usr/bin/vcfsnps -- Installing: /<>/debian/tmp/usr/bin/vcfsort -- Installing: /<>/debian/tmp/usr/bin/vcf_strip_extra_headers -- Installing: /<>/debian/tmp/usr/bin/vcfvarstats -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/pyvcflib.cpython-312-powerpc64le-linux-gnu.so -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/pyvcflib.cpython-312-powerpc64le-linux-gnu.so" to "" -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libvcflib.so.2 -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libvcflib.so -- Installing: /<>/debian/tmp/usr/include/filevercmp.h -- Installing: /<>/debian/tmp/usr/include/IntervalTree.h -- Installing: /<>/debian/tmp/usr/include/catch.hpp -- Installing: /<>/debian/tmp/usr/include/multichoose.h -- Installing: /<>/debian/tmp/usr/include/multipermute.h -- Installing: /<>/debian/tmp/usr/include/BedReader.h -- Installing: /<>/debian/tmp/usr/include/LeftAlign.hpp -- Installing: /<>/debian/tmp/usr/include/Variant.h -- Installing: /<>/debian/tmp/usr/include/allele.hpp -- Installing: /<>/debian/tmp/usr/include/cdflib.hpp -- Installing: /<>/debian/tmp/usr/include/cigar.hpp -- Installing: /<>/debian/tmp/usr/include/convert.h -- Installing: /<>/debian/tmp/usr/include/gpatInfo.hpp -- Installing: /<>/debian/tmp/usr/include/join.h -- Installing: /<>/debian/tmp/usr/include/makeUnique.h -- Installing: /<>/debian/tmp/usr/include/mt19937ar.h -- Installing: /<>/debian/tmp/usr/include/murmur3.hpp -- Installing: /<>/debian/tmp/usr/include/pdflib.hpp -- Installing: /<>/debian/tmp/usr/include/rkmh.hpp -- Installing: /<>/debian/tmp/usr/include/rnglib.hpp -- Installing: /<>/debian/tmp/usr/include/split.h -- Installing: /<>/debian/tmp/usr/include/var.hpp -- Installing: /<>/debian/tmp/usr/include/vcf-c-api.h -- Installing: /<>/debian/tmp/usr/include/vcf-wfa.h -- Installing: /<>/debian/tmp/usr/man/man1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfaltcount.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfnumalt.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsamplediff.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfglbound.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfallelicprimitives.1 -- Installing: /<>/debian/tmp/usr/man/man1/smoother.1 -- Installing: /<>/debian/tmp/usr/man/man1/pVst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfflatten.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsample2info.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfremovesamples.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcombine.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfstats.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfinfo2qual.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfnulldotslashdot.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfroc.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfrandomsample.1 -- Installing: /<>/debian/tmp/usr/man/man1/pFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcflib.1 -- Installing: /<>/debian/tmp/usr/man/man1/wcFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfprimers.1 -- Installing: /<>/debian/tmp/usr/man/man1/permuteGPAT++.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsamplenames.1 -- Installing: /<>/debian/tmp/usr/man/man1/permuteSmooth.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfinfosummarize.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfparsealts.1 -- Installing: /<>/debian/tmp/usr/man/man1/popStats.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfwave.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcreatemulti.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfuniqalleles.1 -- Installing: /<>/debian/tmp/usr/man/man1/genotypeSummary.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfglxgt.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenotypes.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcffixup.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcflib-api.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcflength.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcountalleles.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcat.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcommonsamples.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfclassify.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfleftalign.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfrandom.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcf2tsv.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfdistance.1 -- Installing: /<>/debian/tmp/usr/man/man1/iHS.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcffilter.1 -- Installing: /<>/debian/tmp/usr/man/man1/hapLrt.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfnullgenofields.1 -- Installing: /<>/debian/tmp/usr/man/man1/bFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfafpath.1 -- Installing: /<>/debian/tmp/usr/man/man1/pyvcflib.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfstreamsort.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfkeepsamples.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfindex.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcheck.1 -- Installing: /<>/debian/tmp/usr/man/man1/normalize-iHS.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfentropy.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfuniq.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfremoveaberrantgenotypes.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfbreakmulti.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfannotate.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfhethomratio.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsitesummarize.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfqual2info.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfkeepgeno.1 -- Installing: /<>/debian/tmp/usr/man/man1/segmentFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfaddinfo.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcleancomplex.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfecho.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfoverlay.1 -- Installing: /<>/debian/tmp/usr/man/man1/dumpContigsFromHeader.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcf2fasta.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfevenregions.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcf2dag.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfremap.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenotypecompare.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfkeepinfo.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgeno2haplo.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenosummarize.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenosamplenames.1 -- Installing: /<>/debian/tmp/usr/man/man1/plotHaps.1 -- Installing: /<>/debian/tmp/usr/man/man1/abba-baba.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfhetcount.1 -- Installing: /<>/debian/tmp/usr/man/man1/meltEHH.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfintersect.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgeno2alleles.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfannotategenotypes.1 -- Installing: /<>/debian/tmp/usr/man/man1/segmentIhs.1 -- Installing: /<>/debian/tmp/usr/man/man1/sequenceDiversity.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfld.1 make[1]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install find debian/lib* -name filevercmp.h -delete cp -a debian/ext/filevercmp/filevercmp.h debian/libvcflib-dev/usr/include/vcflib/ mkdir -p debian/libvcflib-dev/usr/include/intervaltree mv debian/libvcflib-dev/usr/include/vcflib/IntervalTree.h debian/libvcflib-dev/usr/include/intervaltree # Remove un-needed py so, install in separate binary package when needed find debian/ -name 'pyvcflib.cpython*.so' -delete # install pkg-config file mkdir -p /<>/debian/libvcflib-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig mv libvcflib.pc /<>/debian/libvcflib-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig rm -rf debian/*/usr/lib/vcflib/bin/*.R for pl in `grep -Rl '#!/usr/bin/env' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libvcflib-dev/usr/lib/powerpc64le-linux-gnu/libvcflib.so: No such file or directory make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=cmake dh_installchangelogs -a -O--buildsystem=cmake dh_installman -a -O--buildsystem=cmake dh_installsystemduser -a -O--buildsystem=cmake dh_lintian -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake debian/rules override_dh_link make[1]: Entering directory '/<>' dh_link for rscript in debian/libvcflib-tools/usr/lib/vcflib/scripts/*.R ; do \ scriptname=$(basename $rscript) ; \ dh_link -p libvcflib-tools usr/lib/vcflib/scripts/$scriptname usr/lib/R/site-library/vcflib/$scriptname ; \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms chmod -x debian/*/usr/lib/vcflib/scripts/*.R make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake debugedit: debian/libvcflib-tools/usr/bin/vcffilter: Unknown DWARF DW_FORM_0x1f20 15c43805e03d0c200e1760b9871dfa98b846bbbe 3e5858b8caa7a286c88c75cda03fa409d4727605 debugedit: debian/libvcflib-tools/usr/bin/vcfallelicprimitives: Unknown DWARF DW_FORM_0x1f20 03dad7498673ab306c5876e13ef554ad1dfd76fd debugedit: debian/libvcflib-tools/usr/bin/vcfuniqalleles: Unknown DWARF DW_FORM_0x1f20 d599aad97879ea1ac4afcf6119f330ab41467380 debugedit: debian/libvcflib-tools/usr/bin/vcf2tsv: Unknown DWARF DW_FORM_0x1f20 1f530a81dca1912a541ca1188a445a7c70430b38 debugedit: debian/libvcflib-tools/usr/bin/vcfkeepinfo: Unknown DWARF DW_FORM_0x1f20 100975473a7a4afeb61c179f3b96b68bd33d61f1 debugedit: debian/libvcflib-tools/usr/bin/vcffixup: Unknown DWARF DW_FORM_0x1f20 a967632717f92b7fecb416dd2e06e9b44b711b73 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten: Unknown DWARF DW_FORM_0x1f20 3d32f30ec5af36ea311da548c42f2ae397939a77 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt: Unknown DWARF DW_FORM_0x1f20 5050ee8021f99561b24bc47b41525f1a70b7d112 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq: Unknown DWARF DW_FORM_0x1f20 2deae20637dbe3553ed1f0802357df6f5a8cf2b2 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples: Unknown DWARF DW_FORM_0x1f20 3e15b1d032e223d12b1914f3e895c5969fc0ce76 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames: Unknown DWARF DW_FORM_0x1f20 691490138ea91af322c149bfa30008e7879c92cb debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter: Unknown DWARF DW_FORM_0x1f20 15c43805e03d0c200e1760b9871dfa98b846bbbe debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount: Unknown DWARF DW_FORM_0x1f20 65b0cbf9e1b9b6f86c8fc3af07baca35902e555e debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles: Unknown DWARF DW_FORM_0x1f21 0469a1be0eee38c4c36bee08b3496798d2992c35 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/pVst: Unknown DWARF DW_FORM_0x1f20 7c98d1d0da0ebda25b8fcfdc285e20fcea784843 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/smoother: Unknown DWARF DW_FORM_0x1f20 bdfbb4297e9b25fabd0bcedc8a26bee9ebdcf7ec debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex: Unknown DWARF DW_FORM_0x1f21 632226a2bc082aae39963f4351e25e4f31bf65b5 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH: Unknown DWARF DW_FORM_0x1f20 9646b9a5d0413297930cb9bca389e7da42aa2e16 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy: Unknown DWARF DW_FORM_0x1f21 f2af4819e3b0101409c54cae396ce8574786bc7e debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt: Unknown DWARF DW_FORM_0x1f21 1c6924db2b3681e9be9a884fcdb4588603397b0c debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate: Unknown DWARF DW_FORM_0x1f20 30e0ad7bfbb7b4c72da36fc21b5c0a9dbeb4ea60 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti: Unknown DWARF DW_FORM_0x1f20 393b3dbdadb95aa950fb813eaa15589e0f309d92 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance: Unknown DWARF DW_FORM_0x1f20 1bfecad11ac8e19a17a0a87eff3ea65f114e7a9e debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions: Unknown DWARF DW_FORM_0x1f20 817a855db71849f685d0d37a8482c72b736f2a22 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes: Unknown DWARF DW_FORM_0x1f20 de7a4aa8df68367748fef91b23f755a17fb10cca debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti: Unknown DWARF DW_FORM_0x1f20 677827bfb3abe14e41f9fb36b1d75ad889e7cc05 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives: Unknown DWARF DW_FORM_0x1f20 03dad7498673ab306c5876e13ef554ad1dfd76fd debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info: Unknown DWARF DW_FORM_0x1f20 e155f7977b1059fb09dcb1aed3cc79b321f1c8bd debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats: Unknown DWARF DW_FORM_0x1f20 b874af8ff726076a3b453ed1d4d9896ddbe5b37b debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio: Unknown DWARF DW_FORM_0x1f20 d91aeab8d53e3418c61dc0de2f2a8376644024a8 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps: Unknown DWARF DW_FORM_0x1f20 e6c9307107d743674afed34a55c9a59eb3a0c54f debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine: Unknown DWARF DW_FORM_0x1f20 74e2090eeeb14d6f8d3f014741239804c4882b08 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho: Unknown DWARF DW_FORM_0x1f21 b64ef467aa05c7caa640511d4147ae0139beefc4 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort: Unknown DWARF DW_FORM_0x1f20 16a6dcbc7f99d3550f203f02bb1f093771aac762 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles: Unknown DWARF DW_FORM_0x1f20 7027dc7f6aa466ec95c60ccbf676d788580574f2 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles: Unknown DWARF DW_FORM_0x1f20 d599aad97879ea1ac4afcf6119f330ab41467380 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta: Unknown DWARF DW_FORM_0x1f20 89fda046513ee76917e9ec9e598ab9c4dde807a2 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect: Unknown DWARF DW_FORM_0x1f21 39bbef05a2e592e052c92c50f399f9790dee3d43 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap: Unknown DWARF DW_FORM_0x1f20 107e2cfb18116c01f3d65d9db16bd5dab35b458c debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom: Unknown DWARF DW_FORM_0x1f20 424e766f794ea8118298896a1b36f38a830e3030 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples: Unknown DWARF DW_FORM_0x1f20 707ea7b90c78a97c3810964de735084e6df3132b debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info: Unknown DWARF DW_FORM_0x1f20 58ea092d0851b4b5d2580f2bbc17df32cc8b482f debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst: Unknown DWARF DW_FORM_0x1f20 946d802dac96d5cb2734e5fc36da4253df3f82fb debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/pFst: Unknown DWARF DW_FORM_0x1f20 0b08d1d579bcf07ffd32d550efdc3ac70f27b79a debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples: Unknown DWARF DW_FORM_0x1f20 c939eb27d472f798261f07f5b21803d97df223ba debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfwave: Unknown DWARF DW_FORM_0x1f20 11ee2dae3daf59497712ad8e6bb40bf90c844b11 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample: Unknown DWARF DW_FORM_0x1f20 15bc1635d1f008b88fb448744ee7422836cbda33 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++: Unknown DWARF DW_FORM_0x1f20 fc99e738f423096c97226cf853cb1e66af3ed61a debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay: Unknown DWARF DW_FORM_0x1f20 13569e2100e5f2960a03e8acb6c35a86e0ab9407 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound: Unknown DWARF DW_FORM_0x1f20 6fbaf094e8cf2cc312f81fccadc53b6a8995cd9f debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity: Unknown DWARF DW_FORM_0x1f20 d62711bb04c15836ed26870d14a4e9e39a46d36b debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld: Unknown DWARF DW_FORM_0x1f20 e672efc3ed1feb3a25d59801bfd1a3289b4f54a4 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat: Unknown DWARF DW_FORM_0x1f21 81edfdef56a92e33933dcb272941b4fce8e9963b debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes: Unknown DWARF DW_FORM_0x1f20 35f3302d5c80b000fa3155271cac13ea7132052d debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify: Unknown DWARF DW_FORM_0x1f20 da4808d8a08e9939d0b12441d0db7e43bc2e5896 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames: Unknown DWARF DW_FORM_0x1f20 5a16e83bf195fddc15e2cde9c31ae3cb6558c503 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/popStats: Unknown DWARF DW_FORM_0x1f20 e568923fac415dbbf69462b47bbd6594b0f58f29 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag: Unknown DWARF DW_FORM_0x1f20 1016033ae168d69a3175ab2ea86c44a9f14a2dc2 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff: Unknown DWARF DW_FORM_0x1f20 59f61923b2ac082002714a08f83bf958a1364b2a debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath: Unknown DWARF DW_FORM_0x1f20 74dd432ec210b9e314af03bded3ac307ffb11800 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary: Unknown DWARF DW_FORM_0x1f20 4f0015c0d27fc12c3f29868ca021a4f399304f61 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv: Unknown DWARF DW_FORM_0x1f20 1f530a81dca1912a541ca1188a445a7c70430b38 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo: Unknown DWARF DW_FORM_0x1f20 bf7abca45b0bf983eb34bad504b94840ecd60bcd debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign: Unknown DWARF DW_FORM_0x1f20 65ffd2e1f2b3f609f56dfef003bc433565bd3fbe debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers: Unknown DWARF DW_FORM_0x1f20 86cbd774b98c4f5bf3ecdee42d10d041df2678a6 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck: Unknown DWARF DW_FORM_0x1f20 c1ed7828aa585caf6a6a3a815adc932381857c26 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/iHS: Unknown DWARF DW_FORM_0x1f20 e8b497522a853c76001ea4cd41f232f960809209 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt: Unknown DWARF DW_FORM_0x1f20 f076f6143049338e584233906e8b52fe32930ac9 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno: Unknown DWARF DW_FORM_0x1f20 9485be2cdd710eb77b55fd21cf85fc8029bd535e debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnullgenofields: Unknown DWARF DW_FORM_0x1f20 906d2867d21955d311c06f84147a95fda8386133 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize: Unknown DWARF DW_FORM_0x1f20 74a7fd72870d2d4774d17b3fc14f97fef2c80147 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength: Unknown DWARF DW_FORM_0x1f20 57c75dca947cef0d6fcb1a54ced949c452b7ab42 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes: Unknown DWARF DW_FORM_0x1f20 3b87babf408f7c5f7828df9db3312254d941b920 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS: Unknown DWARF DW_FORM_0x1f20 2599db05e247321224c29694624be4195fcd8997 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare: Unknown DWARF DW_FORM_0x1f20 ce9f754b83e3ef23ecf76607c05579580cebaa65 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo: Unknown DWARF DW_FORM_0x1f20 100975473a7a4afeb61c179f3b96b68bd33d61f1 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual: Unknown DWARF DW_FORM_0x1f20 7627d6e8d5915e0a52e7757b8be2071216a72b09 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst: Unknown DWARF DW_FORM_0x1f20 680f49c2fbcaec96d6b22c3ccc8a0624ebca96e4 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount: Unknown DWARF DW_FORM_0x1f20 10161ce87484e0e10e5267a6edd2c9ad35f1ea86 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize: Unknown DWARF DW_FORM_0x1f20 efd72a418e0004783a13ca60493cbd01d29aab4a debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize: Unknown DWARF DW_FORM_0x1f20 b0db1584b7d7e6533bd61f7f0ea5bfbc1619c785 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc: Unknown DWARF DW_FORM_0x1f21 47dd7f320185495815fc573b001102d12980f16a debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo: Unknown DWARF DW_FORM_0x1f20 d184a09a599fbb0de37053d7e05910ca58a615da debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs: Unknown DWARF DW_FORM_0x1f20 e537ac65078f6ad1d675e5369d726ccb6b20ae2d debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader: Unknown DWARF DW_FORM_0x1f20 be564ef877b4a5b9de043272108d01bebcd680ea debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup: Unknown DWARF DW_FORM_0x1f20 a967632717f92b7fecb416dd2e06e9b44b711b73 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts: Unknown DWARF DW_FORM_0x1f20 21958344716052519b0675a776817fa76adb40ee debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba: Unknown DWARF DW_FORM_0x1f20 09c3a8d5750acaadbffeeb004bfe113379bd013e debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex: Unknown DWARF DW_FORM_0x1f20 8605a5d93645219c84c2222abe8ea8db2fd7faf7 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth: Unknown DWARF DW_FORM_0x1f20 f947e3e6a69681b61837d437043feab28e3d1b80 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/bFst: Unknown DWARF DW_FORM_0x1f20 7db83232c8b3fbc5928af8a7a9c97762d88dca4e dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib2/usr/lib/powerpc64le-linux-gnu/libvcflib.so.2 was not linked against libdisorder.so.0 (it uses none of the library's symbols) dh_installdeb -a -O--buildsystem=cmake dh_gencontrol -a -O--buildsystem=cmake dpkg-gencontrol: warning: package libvcflib-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libvcflib2 (in debian/libvcflib2); do_strip: , oemstrip: pkgstriptranslations: processing libvcflib-tools (in debian/libvcflib-tools); do_strip: , oemstrip: pkgstriptranslations: processing libvcflib-dev (in debian/libvcflib-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libvcflib-dev/DEBIAN/control, package libvcflib-dev, directory debian/libvcflib-dev INFO: pkgstripfiles: waiting for lock (libvcflib-dev) ... pkgstripfiles: processing control file: debian/libvcflib-tools/DEBIAN/control, package libvcflib-tools, directory debian/libvcflib-tools INFO: pkgstripfiles: waiting for lock (libvcflib-tools) ... pkgstripfiles: processing control file: debian/libvcflib2/DEBIAN/control, package libvcflib2, directory debian/libvcflib2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libvcflib2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libvcflib2' in '../libvcflib2_1.0.9+dfsg1-3build1_ppc64el.deb'. Searching for duplicated docs in dependency libvcflib2... INFO: pkgstripfiles: waiting for lock (libvcflib-tools) ... symlinking changelog.Debian.gz in libvcflib-dev to file in libvcflib2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libvcflib-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libvcflib-dev' in '../libvcflib-dev_1.0.9+dfsg1-3build1_ppc64el.deb'. Searching for duplicated docs in dependency libvcflib2... symlinking changelog.Debian.gz in libvcflib-tools to file in libvcflib2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libvcflib-tools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libvcflib-tools' in '../libvcflib-tools_1.0.9+dfsg1-3build1_ppc64el.deb'. dpkg-genbuildinfo --build=any -O../libvcflib_1.0.9+dfsg1-3build1_ppc64el.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libvcflib_1.0.9+dfsg1-3build1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-05-12T10:04:28Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libvcflib_1.0.9+dfsg1-3build1_ppc64el.changes: ---------------------------------------------- Format: 1.8 Date: Sun, 14 Apr 2024 19:01:17 +0100 Source: libvcflib Binary: libvcflib-dev libvcflib-tools libvcflib2 Built-For-Profiles: noudeb Architecture: ppc64el Version: 1.0.9+dfsg1-3build1 Distribution: noble Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Colin Watson Description: libvcflib-dev - C++ library for parsing and manipulating VCF files (development) libvcflib-tools - C++ library for parsing and manipulating VCF files (tools) libvcflib2 - C++ library for parsing and manipulating VCF files Changes: libvcflib (1.0.9+dfsg1-3build1) noble; urgency=medium . * No-change rebuild against libtabixpp0t64. 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libperl5.38t64 (= 5.38.2-3.2build2), libpipeline1 (= 1.5.7-2), libpkgconf3 (= 1.8.1-2build1), libproc2-0 (= 2:4.0.4-4ubuntu3), libpsl5t64 (= 0.21.2-1.1build1), libpython3-dev (= 3.12.3-0ubuntu1), libpython3-stdlib (= 3.12.3-0ubuntu1), libpython3.12-dev (= 3.12.3-1), libpython3.12-minimal (= 3.12.3-1), libpython3.12-stdlib (= 3.12.3-1), libpython3.12t64 (= 3.12.3-1), libquadmath0 (= 14-20240429-1ubuntu1), libreadline8t64 (= 8.2-4build1), librhash0 (= 1.4.3-3build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build7), libsasl2-2 (= 2.1.28+dfsg1-5ubuntu3), libsasl2-modules-db (= 2.1.28+dfsg1-5ubuntu3), libseccomp2 (= 2.5.5-1ubuntu3), libselinux1 (= 3.5-2ubuntu2), libsframe1 (= 2.42-4ubuntu2), libsmartcols1 (= 2.39.3-9ubuntu6), libsmithwaterman-dev (= 0.0+git20160702.2610e25-12), libsmithwaterman0 (= 0.0+git20160702.2610e25-12), libsqlite3-0 (= 3.45.1-1ubuntu2), libssh-4 (= 0.10.6-2build2), libssl3t64 (= 3.0.13-0ubuntu3), libssw-dev (= 1.1-14build1), libssw0 (= 1.1-14build1), libstdc++-14-dev (= 14-20240429-1ubuntu1), libstdc++6 (= 14-20240429-1ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1ubuntu8), libtabixpp-dev (= 1.1.2-2.1build1), libtabixpp0t64 (= 1.1.2-2.1build1), libtasn1-6 (= 4.19.0-3build1), libtinfo6 (= 6.4+20240113-1ubuntu2), libtool (= 2.4.7-7build1), libtsan2 (= 14-20240429-1ubuntu1), libubsan1 (= 14-20240429-1ubuntu1), libuchardet0 (= 0.0.8-1build1), libudev1 (= 255.4-1ubuntu8), libunistring5 (= 1.1-2build1), libuuid1 (= 2.39.3-9ubuntu6), libuv1t64 (= 1.48.0-1.1build1), libwfa2-0 (= 2.3.3-4), libwfa2-dev (= 2.3.3-4), libxml2 (= 2.9.14+dfsg-1.3ubuntu3), libzstd1 (= 1.5.5+dfsg2-2build1), linux-libc-dev (= 6.8.0-31.31), login (= 1:4.13+dfsg1-4ubuntu3), lto-disabled-list (= 47), m4 (= 1.4.19-4build1), make (= 4.3-4.1build2), man-db (= 2.12.0-4build2), markdown (= 1.0.1-12), mawk (= 1.3.4.20240123-1build1), media-types (= 10.1.0), ncurses-base (= 6.4+20240113-1ubuntu2), ncurses-bin (= 6.4+20240113-1ubuntu2), netbase (= 6.4), patch (= 2.7.6-7build3), perl (= 5.38.2-3.2build2), perl-base (= 5.38.2-3.2build2), perl-modules-5.38 (= 5.38.2-3.2build2), pkg-config (= 1.8.1-2build1), pkgconf (= 1.8.1-2build1), pkgconf-bin (= 1.8.1-2build1), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-4ubuntu3), pybind11-dev (= 2.11.1-2), python3 (= 3.12.3-0ubuntu1), python3-dev (= 3.12.3-0ubuntu1), python3-minimal (= 3.12.3-0ubuntu1), python3-pybind11 (= 2.11.1-2), python3.12 (= 3.12.3-1), python3.12-dev (= 3.12.3-1), python3.12-minimal (= 3.12.3-1), readline-common (= 8.2-4build1), rpcsvc-proto (= 1.4.2-0ubuntu7), sed (= 4.9-2build1), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-6ubuntu3), tar (= 1.35+dfsg-3build1), tzdata (= 2024a-2ubuntu1), util-linux (= 2.39.3-9ubuntu6), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1ubuntu2), zlib1g-dev (= 1:1.3.dfsg-3.1ubuntu2) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1713117677" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libvcflib-dev_1.0.9+dfsg1-3build1_ppc64el.deb --------------------------------------------- new Debian package, version 2.0. size 76372 bytes: control archive=1711 bytes. 1376 bytes, 28 lines control 1784 bytes, 27 lines md5sums Package: libvcflib-dev Source: libvcflib Version: 1.0.9+dfsg1-3build1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 474 Depends: libvcflib2 (= 1.0.9+dfsg1-3build1), libdisorder-dev, libfastahack-dev, libtabixpp-dev, libsmithwaterman-dev, libssw-dev, libwfa2-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/vcflib/vcflib Description: C++ library for parsing and manipulating VCF files (development) The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . * an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files. . This package contains the static library and the header files. drwxr-xr-x root/root 0 2024-04-14 18:01 ./ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/include/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/include/intervaltree/ -rw-r--r-- root/root 11829 2023-12-03 12:29 ./usr/include/intervaltree/IntervalTree.h drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/include/vcflib/ -rw-r--r-- root/root 5828 2023-02-11 16:41 ./usr/include/vcflib/BedReader.h -rw-r--r-- root/root 1706 2023-02-11 16:41 ./usr/include/vcflib/LeftAlign.hpp -rw-r--r-- root/root 22605 2024-04-14 18:01 ./usr/include/vcflib/Variant.h -rw-r--r-- root/root 892 2023-02-11 16:41 ./usr/include/vcflib/allele.hpp -rw-r--r-- root/root 368608 2023-12-03 12:29 ./usr/include/vcflib/catch.hpp -rw-r--r-- root/root 6628 2023-02-11 16:41 ./usr/include/vcflib/cdflib.hpp -rw-r--r-- root/root 986 2023-02-11 16:41 ./usr/include/vcflib/cigar.hpp -rw-r--r-- root/root 697 2023-02-11 16:41 ./usr/include/vcflib/convert.h -rw-r--r-- root/root 1777 2023-12-03 12:29 ./usr/include/vcflib/filevercmp.h -rw-r--r-- root/root 2053 2023-02-11 16:41 ./usr/include/vcflib/gpatInfo.hpp -rw-r--r-- root/root 1254 2023-02-11 16:41 ./usr/include/vcflib/join.h -rw-r--r-- root/root 194 2023-02-11 16:41 ./usr/include/vcflib/makeUnique.h -rw-r--r-- root/root 6580 2023-02-11 16:41 ./usr/include/vcflib/mt19937ar.h -rw-r--r-- root/root 2155 2023-12-03 12:29 ./usr/include/vcflib/multichoose.h -rw-r--r-- root/root 3446 2023-12-03 12:29 ./usr/include/vcflib/multipermute.h -rw-r--r-- root/root 792 2023-02-11 16:41 ./usr/include/vcflib/murmur3.hpp -rw-r--r-- root/root 2507 2023-02-11 16:41 ./usr/include/vcflib/pdflib.hpp -rw-r--r-- root/root 1392 2023-02-11 16:41 ./usr/include/vcflib/rkmh.hpp -rw-r--r-- root/root 1295 2023-02-11 16:41 ./usr/include/vcflib/rnglib.hpp -rw-r--r-- root/root 1825 2023-02-11 16:41 ./usr/include/vcflib/split.h -rw-r--r-- root/root 2269 2023-02-11 16:41 ./usr/include/vcflib/var.hpp -rw-r--r-- root/root 1442 2023-02-11 16:41 ./usr/include/vcflib/vcf-c-api.h -rw-r--r-- root/root 859 2023-02-11 16:41 ./usr/include/vcflib/vcf-wfa.h drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/lib/powerpc64le-linux-gnu/ lrwxrwxrwx root/root 0 2024-04-14 18:01 ./usr/lib/powerpc64le-linux-gnu/libvcflib.so -> libvcflib.so.2 drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/ -rw-r--r-- root/root 283 2024-04-14 18:01 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/libvcflib.pc drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/share/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/share/doc/libvcflib-dev/ lrwxrwxrwx root/root 0 2024-04-14 18:01 ./usr/share/doc/libvcflib-dev/changelog.Debian.gz -> ../libvcflib2/changelog.Debian.gz -rw-r--r-- root/root 2535 2023-12-03 12:29 ./usr/share/doc/libvcflib-dev/copyright drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 91 2023-12-03 12:29 ./usr/share/lintian/overrides/libvcflib-dev libvcflib-tools_1.0.9+dfsg1-3build1_ppc64el.deb ----------------------------------------------- new Debian package, version 2.0. size 756768 bytes: control archive=6898 bytes. 1584 bytes, 28 lines control 18023 bytes, 263 lines md5sums Package: libvcflib-tools Source: libvcflib Version: 1.0.9+dfsg1-3build1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 6913 Depends: libc6 (>= 2.38), libdisorder0 (>= 0.0.2), libfastahack0 (>= 0.0+git20160702.bbc645f), libgcc-s1 (>= 3.4.4), libgomp1 (>= 4.2.1), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 14), libtabixpp0t64 (>= 1.0.0), libvcflib2 (>= 1.0.9+dfsg1), libwfa2-0 (>= 2.3.3), python3:any, r-base-core, r-cran-plyr, r-cran-ggplot2, r-cran-gridbase Suggests: r-cran-pracma Section: science Priority: optional Homepage: https://github.com/vcflib/vcflib Description: C++ library for parsing and manipulating VCF files (tools) The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . * an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files. . This package contains several tools using the library. drwxr-xr-x root/root 0 2024-04-14 18:01 ./ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/bin/ -rwxr-xr-x root/root 68080 2024-04-14 18:01 ./usr/bin/vcf2tsv -rwxr-xr-x root/root 133776 2024-04-14 18:01 ./usr/bin/vcfallelicprimitives -rwxr-xr-x root/root 68272 2024-04-14 18:01 ./usr/bin/vcffilter -rwxr-xr-x root/root 67952 2024-04-14 18:01 ./usr/bin/vcffixup -rwxr-xr-x root/root 67856 2024-04-14 18:01 ./usr/bin/vcfkeepinfo -rwxr-xr-x root/root 404 2023-12-03 12:29 ./usr/bin/vcflib lrwxrwxrwx root/root 0 2024-04-14 18:01 ./usr/bin/vcfstreamsort -> ../lib/vcflib/bin/vcfstreamsort lrwxrwxrwx root/root 0 2024-04-14 18:01 ./usr/bin/vcfuniq -> ../lib/vcflib/bin/vcfuniq -rwxr-xr-x root/root 67856 2024-04-14 18:01 ./usr/bin/vcfuniqalleles drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/lib/R/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/lib/R/site-library/vcflib/ lrwxrwxrwx root/root 0 2024-04-14 18:01 ./usr/lib/R/site-library/vcflib/plotBfst.R -> ../../../vcflib/scripts/plotBfst.R lrwxrwxrwx root/root 0 2024-04-14 18:01 ./usr/lib/R/site-library/vcflib/plotHapLrt.R -> ../../../vcflib/scripts/plotHapLrt.R lrwxrwxrwx root/root 0 2024-04-14 18:01 ./usr/lib/R/site-library/vcflib/plotHaplotypes.R -> ../../../vcflib/scripts/plotHaplotypes.R lrwxrwxrwx root/root 0 2024-04-14 18:01 ./usr/lib/R/site-library/vcflib/plotPfst.R -> ../../../vcflib/scripts/plotPfst.R lrwxrwxrwx root/root 0 2024-04-14 18:01 ./usr/lib/R/site-library/vcflib/plotSmoothed.R -> ../../../vcflib/scripts/plotSmoothed.R lrwxrwxrwx root/root 0 2024-04-14 18:01 ./usr/lib/R/site-library/vcflib/plotWCfst.R -> ../../../vcflib/scripts/plotWCfst.R lrwxrwxrwx root/root 0 2024-04-14 18:01 ./usr/lib/R/site-library/vcflib/plotXPEHH.R -> ../../../vcflib/scripts/plotXPEHH.R drwxr-xr-x root/root 0 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0.0+git20160702.2610e25), libstdc++6 (>= 13.1), libtabixpp0t64 (>= 1.0.0), libwfa2-0 (>= 2.3.3) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/vcflib/vcflib Description: C++ library for parsing and manipulating VCF files The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . * an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files. drwxr-xr-x root/root 0 2024-04-14 18:01 ./ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/lib/powerpc64le-linux-gnu/ -rw-r--r-- root/root 592760 2024-04-14 18:01 ./usr/lib/powerpc64le-linux-gnu/libvcflib.so.2 drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/share/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/share/doc/libvcflib2/ -rw-r--r-- root/root 2438 2024-04-14 18:01 ./usr/share/doc/libvcflib2/changelog.Debian.gz -rw-r--r-- root/root 2535 2023-12-03 12:29 ./usr/share/doc/libvcflib2/copyright drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-04-14 18:01 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 88 2023-12-03 12:29 ./usr/share/lintian/overrides/libvcflib2 +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 390280 Build-Time: 268 Distribution: noble Host Architecture: ppc64el Install-Time: 21 Job: libvcflib_1.0.9+dfsg1-3build1.dsc Machine Architecture: ppc64el Package: libvcflib Package-Time: 291 Source-Version: 1.0.9+dfsg1-3build1 Space: 390280 Status: successful Version: 1.0.9+dfsg1-3build1 -------------------------------------------------------------------------------- Finished at 2024-05-12T10:04:28Z Build needed 00:04:51, 390280k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-28349465 Scanning for processes to kill in build PACKAGEBUILD-28349465