https://launchpad.net/ubuntu/+archive/test-rebuild-20240502-noble/+build/28165509 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-061 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:51:24 UTC 2024 aarch64 Buildd toolchain package versions: launchpad-buildd_237~660~ubuntu20.04.1 python3-lpbuildd_237~660~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 11 May 19:28:11 ntpdate[1875]: adjust time server 10.211.37.1 offset 0.002164 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28165509 --image-type chroot /home/buildd/filecache-default/59612f0fc5bae33f6226b6e60c2e882b82c04bd0 Creating target for build PACKAGEBUILD-28165509 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28165509 Starting target for build PACKAGEBUILD-28165509 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28165509 'deb http://ftpmaster.internal/ubuntu noble main universe' Overriding sources.list in build-PACKAGEBUILD-28165509 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28165509 Updating target for build PACKAGEBUILD-28165509 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [256 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main armhf Packages [1302 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main Translation-en [513 kB] Get:4 http://ftpmaster.internal/ubuntu noble/universe armhf Packages [14.2 MB] Get:5 http://ftpmaster.internal/ubuntu noble/universe Translation-en [5982 kB] Fetched 22.2 MB in 19s (1163 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libperl5.36* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf gcc-14-base gcc-arm-linux-gnueabihf libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: advancecomp apt apt-utils base-files base-passwd bash bash-completion binutils binutils-arm-linux-gnueabihf binutils-common bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libjansson4 libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblockfile-bin liblockfile1 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libnss-nis libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base pinentry-curses procps psmisc readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 171 upgraded, 23 newly installed, 15 to remove and 0 not upgraded. Need to get 98.9 MB of archives. After this operation, 24.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main armhf libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:2 http://ftpmaster.internal/ubuntu noble/main armhf libtirpc-dev armhf 1.3.4+ds-1.1build1 [184 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main armhf libnsl-dev armhf 1.3.0-3build3 [66.2 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main armhf libnsl2 armhf 1.3.0-3build3 [36.5 kB] Get:5 http://ftpmaster.internal/ubuntu noble/universe armhf libnss-nisplus armhf 1.3-5build1 [20.1 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main armhf libgssapi-krb5-2 armhf 1.20.1-6ubuntu2 [119 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main armhf libkrb5-3 armhf 1.20.1-6ubuntu2 [321 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main armhf libk5crypto3 armhf 1.20.1-6ubuntu2 [78.6 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main armhf libkrb5support0 armhf 1.20.1-6ubuntu2 [31.4 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main armhf openssl armhf 3.0.13-0ubuntu3 [974 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main armhf libacl1 armhf 2.3.2-1build1 [15.1 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main armhf libapparmor1 armhf 4.0.0-beta3-0ubuntu3 [45.1 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:14 http://ftpmaster.internal/ubuntu noble/main armhf libcap-ng0 armhf 0.8.4-2build2 [13.6 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main armhf libaudit1 armhf 1:3.1.2-2.1build1 [44.4 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main armhf libblkid1 armhf 2.39.3-9ubuntu6 [160 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main armhf libcap2 armhf 1:2.66-5ubuntu2 [25.8 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt-dev armhf 1:4.4.36-4build1 [120 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt1 armhf 1:4.4.36-4build1 [92.6 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error-l10n all 1.47-3build2 [8064 B] Get:21 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error0 armhf 1.47-3build2 [61.6 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main armhf libgcrypt20 armhf 1.10.3-2build1 [454 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main armhf liblzma5 armhf 5.6.1+really5.4.5-1 [111 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main armhf libzstd1 armhf 1.5.5+dfsg2-2build1 [265 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main armhf libkmod2 armhf 31+20240202-2ubuntu7 [45.1 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main armhf liblz4-1 armhf 1.9.4-1build1 [58.0 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-8-0 armhf 10.42-4ubuntu2 [198 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main armhf libselinux1 armhf 3.5-2ubuntu2 [70.9 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main armhf libmount1 armhf 2.39.3-9ubuntu6 [171 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main armhf perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-7 [662 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main armhf libgdbm6t64 armhf 1.23-5.1build1 [30.3 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main armhf libgdbm-compat4t64 armhf 1.23-5.1build1 [6216 B] Get:34 http://ftpmaster.internal/ubuntu noble/main armhf libperl5.38t64 armhf 5.38.2-3.2build2 [4109 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main armhf perl armhf 5.38.2-3.2build2 [231 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main armhf perl-base armhf 5.38.2-3.2build2 [1671 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main armhf liblocale-gettext-perl armhf 1.07-6ubuntu5 [15.1 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main armhf libtext-iconv-perl armhf 1.7-8build3 [12.7 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main armhf libtext-charwidth-perl armhf 0.04-11build3 [8992 B] Get:40 http://ftpmaster.internal/ubuntu noble/universe armhf libnss-nis armhf 3.1-0ubuntu7 [23.1 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main armhf libc-dev-bin armhf 2.39-0ubuntu8 [19.1 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main armhf libc6-dev armhf 2.39-0ubuntu8 [1352 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main armhf libc6 armhf 2.39-0ubuntu8 [2828 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main armhf libc-bin armhf 2.39-0ubuntu8 [530 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main armhf libsystemd-shared armhf 255.4-1ubuntu8 [2010 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu4 [238 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main armhf libssl3t64 armhf 3.0.13-0ubuntu3 [1558 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main armhf systemd-dev all 255.4-1ubuntu8 [104 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main armhf systemd-sysv armhf 255.4-1ubuntu8 [11.9 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main armhf systemd armhf 255.4-1ubuntu8 [3501 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main armhf libsystemd0 armhf 255.4-1ubuntu8 [410 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu5 [47.0 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main armhf libpam-modules armhf 1.5.3-5ubuntu5 [260 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main armhf libapt-pkg6.0t64 armhf 2.7.14build2 [986 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main armhf libnettle8t64 armhf 3.9.1-2.2build1 [187 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main armhf libhogweed6t64 armhf 3.9.1-2.2build1 [187 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main armhf libp11-kit0 armhf 0.25.3-4ubuntu2 [258 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main armhf libunistring5 armhf 1.1-2build1 [513 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main armhf libgnutls30t64 armhf 3.8.3-1.1ubuntu3 [947 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main armhf apt armhf 2.7.14build2 [1368 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main armhf apt-utils armhf 2.7.14build2 [210 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main armhf bzip2 armhf 1.0.8-5.1 [33.5 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main armhf libbz2-1.0 armhf 1.0.8-5.1 [31.1 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main armhf zlib1g armhf 1:1.3.dfsg-3.1ubuntu2 [49.2 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main armhf debconf-i18n all 1.5.86ubuntu1 [205 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main armhf debconf all 1.5.86ubuntu1 [124 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main armhf libpam0g armhf 1.5.3-5ubuntu5 [62.1 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main armhf libseccomp2 armhf 2.5.5-1ubuntu3 [49.5 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main armhf libargon2-1 armhf 0~20190702+dfsg-4build1 [22.6 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main armhf libudev1 armhf 255.4-1ubuntu8 [167 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu3 [135 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main armhf libjson-c5 armhf 0.17-1build1 [31.3 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main armhf libuuid1 armhf 2.39.3-9ubuntu6 [34.7 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main armhf libfdisk1 armhf 2.39.3-9ubuntu6 [196 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main armhf mount armhf 2.39.3-9ubuntu6 [133 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu4 [21.9 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main armhf libkeyutils1 armhf 1.6.3-3build1 [8236 B] Get:79 http://ftpmaster.internal/ubuntu noble/main armhf libtirpc3t64 armhf 1.3.4+ds-1.1build1 [73.3 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main armhf linux-libc-dev armhf 6.8.0-31.31 [1557 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main armhf gcc-14-base armhf 14-20240412-0ubuntu1 [47.6 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main armhf libgcc-s1 armhf 14-20240412-0ubuntu1 [41.5 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main armhf base-files armhf 13ubuntu10 [73.3 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main armhf debianutils armhf 5.17build1 [89.0 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main armhf bash armhf 5.2.21-2ubuntu4 [668 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main armhf bsdutils armhf 1:2.39.3-9ubuntu6 [102 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main armhf coreutils armhf 9.4-3ubuntu6 [1280 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main armhf libstdc++6 armhf 14-20240412-0ubuntu1 [714 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main armhf libxxhash0 armhf 0.8.2-2build1 [31.5 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main armhf libgmp10 armhf 2:6.3.0+dfsg-2ubuntu6 [207 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main armhf libffi8 armhf 3.4.6-1build1 [21.2 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main armhf libidn2-0 armhf 2.3.7-2build1 [96.2 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main armhf libtasn1-6 armhf 4.19.0-3build1 [37.2 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main armhf libdebconfclient0 armhf 0.271ubuntu3 [10.9 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main armhf base-passwd armhf 3.6.3build1 [50.9 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main armhf libassuan0 armhf 2.5.6-1build1 [31.3 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main armhf libsqlite3-0 armhf 3.45.1-1ubuntu2 [590 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main armhf gpg armhf 2.4.4-2ubuntu17 [524 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main armhf gpg-agent armhf 2.4.4-2ubuntu17 [235 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main armhf gpgconf armhf 2.4.4-2ubuntu17 [115 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main armhf readline-common all 8.2-4build1 [56.5 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main armhf libncursesw6 armhf 6.4+20240113-1ubuntu2 [119 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main armhf libtinfo6 armhf 6.4+20240113-1ubuntu2 [90.8 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main armhf libreadline8t64 armhf 8.2-4build1 [129 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main armhf pinentry-curses armhf 1.2.1-3ubuntu5 [36.7 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main armhf init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main armhf libnpth0t64 armhf 1.6-3.1build1 [6998 B] Get:108 http://ftpmaster.internal/ubuntu noble/main armhf gpgv armhf 2.4.4-2ubuntu17 [224 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main armhf ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main armhf tar armhf 1.35+dfsg-3build1 [236 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main armhf dpkg armhf 1.22.6ubuntu6 [1230 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main armhf dash armhf 0.5.12-6ubuntu5 [80.8 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main armhf diffutils armhf 1:3.10-1build1 [167 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main armhf findutils armhf 4.9.0-5build1 [293 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main armhf grep armhf 3.11-4build1 [157 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main armhf gzip armhf 1.12-1ubuntu3 [95.8 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main armhf hostname armhf 3.23+nmu2ubuntu2 [10.4 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main armhf login armhf 1:4.13+dfsg1-4ubuntu3 [200 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main armhf ncurses-bin armhf 6.4+20240113-1ubuntu2 [178 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main armhf sed armhf 4.9-2build1 [190 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main armhf util-linux armhf 2.39.3-9ubuntu6 [1216 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main armhf ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main armhf sysvinit-utils armhf 3.08-6ubuntu3 [33.8 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu4 [22.0 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu4 [202 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu4 [571 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main armhf optipng armhf 0.7.8+ds-1build2 [109 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main armhf libpng16-16t64 armhf 1.6.43-5build1 [166 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main armhf init armhf 1.66ubuntu1 [6186 B] Get:130 http://ftpmaster.internal/ubuntu noble/main armhf libsmartcols1 armhf 2.39.3-9ubuntu6 [117 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main armhf uuid-runtime armhf 2.39.3-9ubuntu6 [41.8 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main armhf libattr1 armhf 1:2.5.2-1build1 [10.2 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main armhf libmd0 armhf 1.1.0-2build1 [23.0 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main armhf libpam-runtime all 1.5.3-5ubuntu5 [40.8 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main armhf libsemanage-common all 3.5-1build5 [10.1 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main armhf libsepol2 armhf 3.5-2build1 [263 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main armhf libsemanage2 armhf 3.5-1build5 [84.5 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main armhf passwd armhf 1:4.13+dfsg1-4ubuntu3 [817 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main armhf libproc2-0 armhf 2:4.0.4-4ubuntu3 [49.0 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu4 [14.7 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main armhf mawk armhf 1.3.4.20240123-1build1 [115 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main armhf procps armhf 2:4.0.4-4ubuntu3 [700 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main armhf sensible-utils all 0.0.22 [22.5 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main armhf ca-certificates all 20240203 [159 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main armhf krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main armhf tzdata all 2024a-2ubuntu1 [273 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main armhf bash-completion all 1:2.11-8 [180 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main armhf bsdextrautils armhf 2.39.3-9ubuntu6 [78.7 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main armhf libgpm2 armhf 1.20.7-11 [13.6 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main armhf libip4tc2 armhf 1.8.10-3ubuntu2 [21.3 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main armhf libjansson4 armhf 2.14-2build2 [28.2 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main armhf psmisc armhf 23.7-1build1 [176 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main armhf xz-utils armhf 5.6.1+really5.4.5-1 [267 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main armhf advancecomp armhf 2.5-1build1 [198 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main armhf libctf0 armhf 2.42-4ubuntu2 [87.7 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main armhf libctf-nobfd0 armhf 2.42-4ubuntu2 [88.0 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main armhf binutils-arm-linux-gnueabihf armhf 2.42-4ubuntu2 [2925 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main armhf libbinutils armhf 2.42-4ubuntu2 [460 kB] Get:159 http://ftpmaster.internal/ubuntu noble/main armhf binutils armhf 2.42-4ubuntu2 [3072 B] Get:160 http://ftpmaster.internal/ubuntu noble/main armhf binutils-common armhf 2.42-4ubuntu2 [217 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main armhf libsframe1 armhf 2.42-4ubuntu2 [13.1 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main armhf libubsan1 armhf 14-20240412-0ubuntu1 [1154 kB] Get:163 http://ftpmaster.internal/ubuntu noble/main armhf libgomp1 armhf 14-20240412-0ubuntu1 [125 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main armhf libatomic1 armhf 14-20240412-0ubuntu1 [7816 B] Get:165 http://ftpmaster.internal/ubuntu noble/main armhf libasan8 armhf 14-20240412-0ubuntu1 [2942 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main armhf g++-13 armhf 13.2.0-23ubuntu4 [14.5 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main armhf gcc-13 armhf 13.2.0-23ubuntu4 [453 kB] Get:168 http://ftpmaster.internal/ubuntu noble/main armhf libstdc++-13-dev armhf 13.2.0-23ubuntu4 [2456 kB] Get:169 http://ftpmaster.internal/ubuntu noble/main armhf libgcc-13-dev armhf 13.2.0-23ubuntu4 [899 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main armhf libcc1-0 armhf 14-20240412-0ubuntu1 [39.0 kB] Get:171 http://ftpmaster.internal/ubuntu noble/main armhf cpp-13 armhf 13.2.0-23ubuntu4 [1034 B] Get:172 http://ftpmaster.internal/ubuntu noble/main armhf gcc-13-base armhf 13.2.0-23ubuntu4 [48.9 kB] Get:173 http://ftpmaster.internal/ubuntu noble/main armhf libisl23 armhf 0.26-3build1 [544 kB] Get:174 http://ftpmaster.internal/ubuntu noble/main armhf libmpfr6 armhf 4.2.1-1build1 [229 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main armhf libmpc3 armhf 1.3.1-1build1 [46.7 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main armhf gcc-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [16.9 MB] Get:177 http://ftpmaster.internal/ubuntu noble/main armhf g++-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [9941 kB] Get:178 http://ftpmaster.internal/ubuntu noble/main armhf cpp-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [8759 kB] Get:179 http://ftpmaster.internal/ubuntu noble/main armhf g++ armhf 4:13.2.0-7ubuntu1 [1090 B] Get:180 http://ftpmaster.internal/ubuntu noble/main armhf gcc armhf 4:13.2.0-7ubuntu1 [5022 B] Get:181 http://ftpmaster.internal/ubuntu noble/main armhf cpp armhf 4:13.2.0-7ubuntu1 [22.4 kB] Get:182 http://ftpmaster.internal/ubuntu noble/main armhf cpp-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [5320 B] Get:183 http://ftpmaster.internal/ubuntu noble/main armhf gcc-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1220 B] Get:184 http://ftpmaster.internal/ubuntu noble/main armhf g++-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [966 B] Get:185 http://ftpmaster.internal/ubuntu noble/main armhf dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:186 http://ftpmaster.internal/ubuntu noble/main armhf libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:187 http://ftpmaster.internal/ubuntu noble/main armhf patch armhf 2.7.6-7build3 [110 kB] Get:188 http://ftpmaster.internal/ubuntu noble/main armhf make armhf 4.3-4.1build2 [162 kB] Get:189 http://ftpmaster.internal/ubuntu noble/main armhf lto-disabled-list all 47 [12.4 kB] Get:190 http://ftpmaster.internal/ubuntu noble/main armhf libfakeroot armhf 1.33-1 [28.7 kB] Get:191 http://ftpmaster.internal/ubuntu noble/main armhf fakeroot armhf 1.33-1 [68.6 kB] Get:192 http://ftpmaster.internal/ubuntu noble/main armhf liblockfile-bin armhf 1.17-1build3 [10.5 kB] Get:193 http://ftpmaster.internal/ubuntu noble/main armhf liblockfile1 armhf 1.17-1build3 [6208 B] Get:194 http://ftpmaster.internal/ubuntu noble/main armhf lockfile-progs armhf 0.1.19build2 [8062 B] Preconfiguring packages ... 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Unpacking systemd (255.4-1ubuntu8) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd0_255.4-1ubuntu8_armhf.deb ... 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(both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') Preparing to unpack .../libbz2-1.0_1.0.8-5.1_armhf.deb ... Unpacking libbz2-1.0:armhf (1.0.8-5.1) over (1.0.8-5build1) ... Setting up libbz2-1.0:armhf (1.0.8-5.1) ... (Reading database ... 14953 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu2_armhf.deb ... Unpacking zlib1g:armhf (1:1.3.dfsg-3.1ubuntu2) over (1:1.2.13.dfsg-1ubuntu5) ... Setting up zlib1g:armhf (1:1.3.dfsg-3.1ubuntu2) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.1build1) ... Preparing to unpack .../5-linux-libc-dev_6.8.0-31.31_armhf.deb ... Unpacking linux-libc-dev:armhf (6.8.0-31.31) over (6.5.0-9.9) ... Selecting previously unselected package gcc-14-base:armhf. Preparing to unpack .../6-gcc-14-base_14-20240412-0ubuntu1_armhf.deb ... Unpacking gcc-14-base:armhf (14-20240412-0ubuntu1) ... Setting up gcc-14-base:armhf (14-20240412-0ubuntu1) ... (Reading database ... 14977 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14-20240412-0ubuntu1_armhf.deb ... Unpacking libgcc-s1:armhf (14-20240412-0ubuntu1) over (13.2.0-4ubuntu3) ... Setting up libgcc-s1:armhf (14-20240412-0ubuntu1) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4build1) ... Preparing to unpack .../pinentry-curses_1.2.1-3ubuntu5_armhf.deb ... Unpacking pinentry-curses (1.2.1-3ubuntu5) over (1.2.1-1ubuntu1) ... Preparing to unpack .../init-system-helpers_1.66ubuntu1_all.deb ... Unpacking init-system-helpers (1.66ubuntu1) over (1.65.2ubuntu1) ... Setting up init-system-helpers (1.66ubuntu1) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2 to /lib/arm-linux-gnueabihf/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2.3 to /lib/arm-linux-gnueabihf/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2 to /lib/arm-linux-gnueabihf/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2.4 to /lib/arm-linux-gnueabihf/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu4) ... Setting up libcom-err2:armhf (1.47.0-2.4~exp1ubuntu4) ... Setting up libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu4) ... (Reading database ... 14977 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu4_armhf.deb ... 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Setting up gcc-13-base:armhf (13.2.0-23ubuntu4) ... Setting up make (4.3-4.1build2) ... Setting up libmpfr6:armhf (4.2.1-1build1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.6.1+really5.4.5-1) ... Setting up perl-modules-5.38 (5.38.2-3.2build2) ... Setting up libproc2-0:armhf (2:4.0.4-4ubuntu3) ... Setting up libpng16-16t64:armhf (1.6.43-5build1) ... Setting up libmpc3:armhf (1.3.1-1build1) ... Setting up libatomic1:armhf (14-20240412-0ubuntu1) ... Setting up patch (2.7.6-7build3) ... Setting up libss2:armhf (1.47.0-2.4~exp1ubuntu4) ... Setting up libncursesw6:armhf (6.4+20240113-1ubuntu2) ... Setting up libk5crypto3:armhf (1.20.1-6ubuntu2) ... Setting up logsave (1.47.0-2.4~exp1ubuntu4) ... Setting up libdb5.3t64:armhf (5.3.28+dfsg2-7) ... Setting up libubsan1:armhf (14-20240412-0ubuntu1) ... Setting up advancecomp (2.5-1build1) ... Setting up sensible-utils (0.0.22) ... Setting up uuid-runtime (2.39.3-9ubuntu6) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libcrypt-dev:armhf (1:4.4.36-4build1) ... Setting up libasan8:armhf (14-20240412-0ubuntu1) ... Setting up procps (2:4.0.4-4ubuntu3) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1build1) ... Setting up libkrb5-3:armhf (1.20.1-6ubuntu2) ... Setting up liblockfile1:armhf (1.17-1build3) ... Setting up libperl5.38t64:armhf (5.38.2-3.2build2) ... Setting up libbinutils:armhf (2.42-4ubuntu2) ... Setting up libisl23:armhf (0.26-3build1) ... Setting up libc-dev-bin (2.39-0ubuntu8) ... Setting up openssl (3.0.13-0ubuntu3) ... Setting up libgpg-error-l10n (1.47-3build2) ... Setting up readline-common (8.2-4build1) ... Setting up libcc1-0:armhf (14-20240412-0ubuntu1) ... Setting up liblocale-gettext-perl (1.07-6ubuntu5) ... Setting up libctf0:armhf (2.42-4ubuntu2) ... Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up apt-utils (2.7.14build2) ... Setting up cpp-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ... Setting up debconf-i18n (1.5.86ubuntu1) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu4) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2build2) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up lockfile-progs (0.1.19build2) ... Setting up libgssapi-krb5-2:armhf (1.20.1-6ubuntu2) ... Setting up libdpkg-perl (1.22.6ubuntu6) ... Setting up libreadline8t64:armhf (8.2-4build1) ... Setting up libgcc-13-dev:armhf (13.2.0-23ubuntu4) ... Setting up gpgconf (2.4.4-2ubuntu17) ... Setting up libc6-dev:armhf (2.39-0ubuntu8) ... Setting up binutils-arm-linux-gnueabihf (2.42-4ubuntu2) ... Setting up gpg (2.4.4-2ubuntu17) ... Setting up cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... Setting up libstdc++-13-dev:armhf (13.2.0-23ubuntu4) ... Setting up gpg-agent (2.4.4-2ubuntu17) ... Setting up cpp-13 (13.2.0-23ubuntu4) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.1build1) ... Setting up binutils (2.42-4ubuntu2) ... Setting up gcc-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ... Setting up dpkg-dev (1.22.6ubuntu6) ... Setting up libtirpc-dev:armhf (1.3.4+ds-1.1build1) ... Setting up gcc-13 (13.2.0-23ubuntu4) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up libnsl2:armhf (1.3.0-3build3) ... Setting up gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... Setting up g++-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ... Setting up g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... Setting up g++-13 (13.2.0-23ubuntu4) ... Setting up libnss-nisplus:armhf (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up libnss-nis:armhf (3.1-0ubuntu7) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Setting up libnsl-dev:armhf (1.3.0-3build3) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for debianutils (5.17build1) ... (Reading database ... 15019 files and directories currently installed.) Purging configuration files for libssl3:armhf (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28165509 armhf noble -c chroot:build-PACKAGEBUILD-28165509 --arch=armhf --dist=noble --nolog clipper_2.1.20201109-2build1.dsc Initiating build PACKAGEBUILD-28165509 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:51:24 UTC 2024 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-061.buildd +==============================================================================+ | clipper 2.1.20201109-2build1 (armhf) Sat, 11 May 2024 19:29:44 +0000 | +==============================================================================+ Package: clipper Version: 2.1.20201109-2build1 Source Version: 2.1.20201109-2build1 Distribution: noble Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28165509/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/clipper-kNK7xd/resolver-dMylHH' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clipper_2.1.20201109-2build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/clipper-kNK7xd/clipper-2.1.20201109' with '<>' I: NOTICE: Log filtering will replace 'build/clipper-kNK7xd' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), fftw-dev, gfortran, libccp4-dev, libmmdb2-dev, sfftw-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), fftw-dev, gfortran, libccp4-dev, libmmdb2-dev, sfftw-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [400 B] Get:5 copy:/<>/apt_archive ./ Packages [478 B] Fetched 1835 B in 0s (42.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libgssapi-krb5-2 libip4tc2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz fftw-dev fftw2 file gettext gettext-base gfortran gfortran-13 gfortran-13-arm-linux-gnueabihf gfortran-arm-linux-gnueabihf groff-base intltool-debian libarchive-zip-perl libbsd0 libccp4-data libccp4-dev libccp4c0t64 libccp4f0 libdebhelper-perl libdw1t64 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 libfile-stripnondeterminism-perl libgfortran-13-dev libgfortran5 libhwloc-plugins libhwloc15 libibverbs1 libicu74 libmagic-mgc libmagic1t64 libmmdb2-0 libmmdb2-dev libmunge2 libnl-3-200 libnl-route-3-200 libopenmpi3t64 libpciaccess0 libpipeline1 libpmix2t64 librdmacm1t64 libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 po-debconf sfftw-dev sfftw2 Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make mpi-defaults-bin gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-13-doc libcoarrays-dev groff pciutils libtool-doc gcj-jdk m4-doc apparmor less www-browser opencl-icd libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl ibverbs-providers libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz fftw-dev fftw2 file gettext gettext-base gfortran gfortran-13 gfortran-13-arm-linux-gnueabihf gfortran-arm-linux-gnueabihf groff-base intltool-debian libarchive-zip-perl libbsd0 libccp4-data libccp4-dev libccp4c0t64 libccp4f0 libdebhelper-perl libdw1t64 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 libfile-stripnondeterminism-perl libgfortran-13-dev libgfortran5 libhwloc-plugins libhwloc15 libibverbs1 libicu74 libmagic-mgc libmagic1t64 libmmdb2-0 libmmdb2-dev libmunge2 libnl-3-200 libnl-route-3-200 libopenmpi3t64 libpciaccess0 libpipeline1 libpmix2t64 librdmacm1t64 libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 po-debconf sbuild-build-depends-main-dummy sfftw-dev sfftw2 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 34.1 MB of archives. After this operation, 103 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [696 B] Get:2 http://ftpmaster.internal/ubuntu noble/main armhf libbsd0 armhf 0.12.1-1build1 [36.5 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main armhf libelf1t64 armhf 0.190-1.1build4 [49.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main armhf libicu74 armhf 74.2-1ubuntu3 [10.5 MB] Get:5 http://ftpmaster.internal/ubuntu noble/main armhf libxml2 armhf 2.9.14+dfsg-1.3ubuntu3 [595 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main armhf libmagic-mgc armhf 1:5.45-3build1 [307 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main armhf libmagic1t64 armhf 1:5.45-3build1 [81.4 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main armhf file armhf 1:5.45-3build1 [21.1 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main armhf gettext-base armhf 0.21-14ubuntu2 [38.1 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main armhf libuchardet0 armhf 0.0.8-1build1 [73.9 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main armhf groff-base armhf 1.23.0-3build2 [946 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main armhf libnl-3-200 armhf 3.7.0-0.3build1 [49.0 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libnl-route-3-200 armhf 3.7.0-0.3build1 [162 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main armhf libibverbs1 armhf 50.0-2build2 [57.9 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main armhf libpipeline1 armhf 1.5.7-2 [26.2 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main armhf libxau6 armhf 1:1.0.9-1build6 [6312 B] Get:17 http://ftpmaster.internal/ubuntu noble/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu6 [8738 B] Get:18 http://ftpmaster.internal/ubuntu noble/main armhf libxcb1 armhf 1.15-1ubuntu2 [45.2 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main armhf libx11-data all 2:1.8.7-1build1 [115 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main armhf libx11-6 armhf 2:1.8.7-1build1 [583 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main armhf libxext6 armhf 2:1.3.4-1build2 [25.3 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main armhf man-db armhf 2.12.0-4build2 [1202 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main armhf m4 armhf 1.4.19-4build1 [235 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main armhf autoconf all 2.71-3 [339 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main armhf autotools-dev all 20220109.1 [44.9 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main armhf automake all 1:1.16.5-1.3ubuntu1 [558 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main armhf autopoint all 0.21-14ubuntu2 [422 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main armhf libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main armhf libtool all 2.4.7-7build1 [166 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main armhf dh-autoreconf all 20 [16.1 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main armhf libsub-override-perl all 0.10-1 [10.0 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main armhf dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:35 http://ftpmaster.internal/ubuntu noble/main armhf libdw1t64 armhf 0.190-1.1build4 [235 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main armhf debugedit armhf 1:5.0-5build2 [42.3 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main armhf dwz armhf 0.15-1build6 [116 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main armhf gettext armhf 0.21-14ubuntu2 [800 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main armhf debhelper all 13.14.1ubuntu5 [869 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main armhf libevent-core-2.1-7t64 armhf 2.1.12-stable-9ubuntu2 [82.6 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main armhf libevent-pthreads-2.1-7t64 armhf 2.1.12-stable-9ubuntu2 [7540 B] Get:44 http://ftpmaster.internal/ubuntu noble/main armhf librdmacm1t64 armhf 50.0-2build2 [63.0 kB] Get:45 http://ftpmaster.internal/ubuntu noble/universe armhf libfabric1 armhf 1.17.0-3build2 [419 kB] Get:46 http://ftpmaster.internal/ubuntu noble/universe armhf libhwloc15 armhf 2.10.0-1build1 [146 kB] Get:47 http://ftpmaster.internal/ubuntu noble/universe armhf libmunge2 armhf 0.5.15-4build1 [17.1 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main armhf libpciaccess0 armhf 0.17-3build1 [16.3 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main armhf libxnvctrl0 armhf 510.47.03-0ubuntu4 [11.6 kB] Get:50 http://ftpmaster.internal/ubuntu noble/universe armhf ocl-icd-libopencl1 armhf 2.3.2-1build1 [34.5 kB] Get:51 http://ftpmaster.internal/ubuntu noble/universe armhf libhwloc-plugins armhf 2.10.0-1build1 [13.7 kB] Get:52 http://ftpmaster.internal/ubuntu noble/universe armhf libpmix2t64 armhf 5.0.1-4.1build1 [616 kB] Get:53 http://ftpmaster.internal/ubuntu noble/universe armhf libopenmpi3t64 armhf 4.1.6-7ubuntu2 [2041 kB] Get:54 http://ftpmaster.internal/ubuntu noble/universe armhf fftw2 armhf 2.1.5-6build2 [161 kB] Get:55 http://ftpmaster.internal/ubuntu noble/universe armhf fftw-dev armhf 2.1.5-6build2 [194 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main armhf libgfortran5 armhf 14-20240412-0ubuntu1 [316 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main armhf libgfortran-13-dev armhf 13.2.0-23ubuntu4 [359 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main armhf gfortran-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [9182 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main armhf gfortran-13 armhf 13.2.0-23ubuntu4 [11.7 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main armhf gfortran-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1024 B] Get:61 http://ftpmaster.internal/ubuntu noble/main armhf gfortran armhf 4:13.2.0-7ubuntu1 [1166 B] Get:62 http://ftpmaster.internal/ubuntu noble/universe armhf libccp4-data all 8.0.0-2ubuntu1 [65.2 kB] Get:63 http://ftpmaster.internal/ubuntu noble/universe armhf libccp4c0t64 armhf 8.0.0-2ubuntu1 [81.9 kB] Get:64 http://ftpmaster.internal/ubuntu noble/universe armhf libmmdb2-0 armhf 2.0.22-1 [305 kB] Get:65 http://ftpmaster.internal/ubuntu noble/universe armhf libmmdb2-dev armhf 2.0.22-1 [93.5 kB] Get:66 http://ftpmaster.internal/ubuntu noble/universe armhf sfftw2 armhf 2.1.5-6build2 [163 kB] Get:67 http://ftpmaster.internal/ubuntu noble/universe armhf sfftw-dev armhf 2.1.5-6build2 [198 kB] Get:68 http://ftpmaster.internal/ubuntu noble/universe armhf libccp4f0 armhf 8.0.0-2ubuntu1 [218 kB] Get:69 http://ftpmaster.internal/ubuntu noble/universe armhf libccp4-dev armhf 8.0.0-2ubuntu1 [42.4 kB] Preconfiguring packages ... Fetched 34.1 MB in 4s (8615 kB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 15019 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.12.1-1build1_armhf.deb ... Unpacking libbsd0:armhf (0.12.1-1build1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../01-libelf1t64_0.190-1.1build4_armhf.deb ... Unpacking libelf1t64:armhf (0.190-1.1build4) ... Selecting previously unselected package libicu74:armhf. Preparing to unpack .../02-libicu74_74.2-1ubuntu3_armhf.deb ... Unpacking libicu74:armhf (74.2-1ubuntu3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../03-libxml2_2.9.14+dfsg-1.3ubuntu3_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3ubuntu3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3build1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3build1) ... 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Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu3) ... Setting up libccp4f0:armhf (8.0.0-2ubuntu1) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gfortran-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu6) ... Setting up libxcb1:armhf (1.15-1ubuntu2) ... Setting up gettext (0.21-14ubuntu2) ... Setting up libccp4-dev:armhf (8.0.0-2ubuntu1) ... Setting up libtool (2.4.7-7build1) ... Setting up libevent-pthreads-2.1-7t64:armhf (2.1.12-stable-9ubuntu2) ... Setting up gfortran-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:armhf (3.7.0-0.3build1) ... Setting up dh-autoreconf (20) ... Setting up gfortran-13 (13.2.0-23ubuntu4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3build2) ... Setting up libx11-6:armhf (2:1.8.7-1build1) ... Setting up libibverbs1:armhf (50.0-2build2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:armhf (2:1.3.4-1build2) ... Setting up man-db (2.12.0-4build2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up gfortran (4:13.2.0-7ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist Setting up libxnvctrl0:armhf (510.47.03-0ubuntu4) ... Setting up librdmacm1t64:armhf (50.0-2build2) ... Setting up libfabric1:armhf (1.17.0-3build2) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up libhwloc-plugins:armhf (2.10.0-1build1) ... Setting up libpmix2t64:armhf (5.0.1-4.1build1) ... Setting up libopenmpi3t64:armhf (4.1.6-7ubuntu2) ... Setting up sfftw2 (2.1.5-6build2) ... Setting up fftw2 (2.1.5-6build2) ... Setting up sfftw-dev (2.1.5-6build2) ... Setting up fftw-dev (2.1.5-6build2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:51:24 UTC 2024 arm64 (armv7l) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu4 gcc-13_13.2.0-23ubuntu4 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu4 libstdc++6_14-20240412-0ubuntu1 linux-libc-dev_6.8.0-31.31 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13ubuntu10 base-passwd_3.6.3build1 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-arm-linux-gnueabihf_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu6 bsdutils_1:2.39.3-9ubuntu6 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3ubuntu6 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-23ubuntu4 cpp-13-arm-linux-gnueabihf_13.2.0-23ubuntu4 cpp-arm-linux-gnueabihf_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu5 debconf_1.5.86ubuntu1 debconf-i18n_1.5.86ubuntu1 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1build1 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu4 fakeroot_1.33-1 fftw-dev_2.1.5-6build2 fftw2_2.1.5-6build2 file_1:5.45-3build1 findutils_4.9.0-5build1 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-23ubuntu4 g++-13-arm-linux-gnueabihf_13.2.0-23ubuntu4 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libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libbinutils_2.42-4ubuntu2 libblkid1_2.39.3-9ubuntu6 libbsd0_0.12.1-1build1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-0ubuntu8 libc-dev-bin_2.39-0ubuntu8 libc6_2.39-0ubuntu8 libc6-dev_2.39-0ubuntu8 libcap-ng0_0.8.4-2build2 libcap2_1:2.66-5ubuntu2 libcc1-0_14-20240412-0ubuntu1 libccp4-data_8.0.0-2ubuntu1 libccp4-dev_8.0.0-2ubuntu1 libccp4c0t64_8.0.0-2ubuntu1 libccp4f0_8.0.0-2ubuntu1 libcom-err2_1.47.0-2.4~exp1ubuntu4 libcrypt-dev_1:4.4.36-4build1 libcrypt1_1:4.4.36-4build1 libcryptsetup12_2:2.7.0-1ubuntu4 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.271ubuntu3 libdebhelper-perl_13.14.1ubuntu5 libdevmapper1.02.1_2:1.02.185-3ubuntu3 libdpkg-perl_1.22.6ubuntu6 libdw1t64_0.190-1.1build4 libelf1t64_0.190-1.1build4 libevent-core-2.1-7t64_2.1.12-stable-9ubuntu2 libevent-pthreads-2.1-7t64_2.1.12-stable-9ubuntu2 libext2fs2t64_1.47.0-2.4~exp1ubuntu4 libfabric1_1.17.0-3build2 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sfftw2_2.1.5-6build2 systemd_255.4-1ubuntu8 systemd-dev_255.4-1ubuntu8 systemd-sysv_255.4-1ubuntu8 sysvinit-utils_3.08-6ubuntu3 tar_1.35+dfsg-3build1 tzdata_2024a-2ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-9ubuntu6 uuid-runtime_2.39.3-9ubuntu6 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: clipper Binary: libclipper-dev, libclipper2, libclipper-doc Architecture: any all Version: 2.1.20201109-2build1 Maintainer: Ubuntu Developers Uploaders: Picca Frédéric-Emmanuel , Morten Kjeldgaard , Andrius Merkys Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/science-team/clipper Vcs-Git: https://salsa.debian.org/science-team/clipper.git Build-Depends: debhelper-compat (= 13), fftw-dev, gfortran, libccp4-dev, libmmdb2-dev, sfftw-dev Build-Depends-Indep: doxygen Package-List: libclipper-dev deb libdevel optional arch=any libclipper-doc deb doc optional arch=all libclipper2 deb libs optional arch=any Checksums-Sha1: 4b22318cb33d91b3a1ebe4e2afeddfad91255936 4266641 clipper_2.1.20201109.orig.tar.gz ea8389f08546c595e4d45e86266ced09337624e1 36112 clipper_2.1.20201109-2build1.debian.tar.xz Checksums-Sha256: 01276ebda309ece40a972560eec5a4f83b97ee37757675454ebe36083053e570 4266641 clipper_2.1.20201109.orig.tar.gz a1cf88e708b46343f502ecda015e47d7e6e46fbaf1f65b073ab77dfb3f22c8ea 36112 clipper_2.1.20201109-2build1.debian.tar.xz Files: 58cbd551d8a87d3fc9b01a2a634b2b3b 4266641 clipper_2.1.20201109.orig.tar.gz d694613d540d897e5051bcce347dfb47 36112 clipper_2.1.20201109-2build1.debian.tar.xz Original-Maintainer: Debian Science Maintainers -----BEGIN PGP SIGNATURE----- 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signature: No public key dpkg-source: warning: cannot verify inline signature for ./clipper_2.1.20201109-2build1.dsc: no acceptable signature found dpkg-source: info: extracting clipper in /<> dpkg-source: info: unpacking clipper_2.1.20201109.orig.tar.gz dpkg-source: info: unpacking clipper_2.1.20201109-2build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add-mmdb2-to-examples-LIBS.patch dpkg-source: info: applying narrowing-conversions.patch dpkg-source: info: applying fix_pkg-config.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28165509 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28165509 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-28165509 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package clipper dpkg-buildpackage: info: source version 2.1.20201109-2build1 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_autoreconf_clean "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -f doxy.core.tag rm -rf doc/ dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars debian/libclipper-doc.substvars debian/files rm -fr -- debian/libclipper-dev/ debian/tmp/ debian/libclipper2/ debian/libclipper-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_update_autotools_config -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" cp -an --reflink=auto build-aux/config.guess debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead mv debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe cp -f /usr/share/misc/config.guess ./build-aux/config.guess cp -an --reflink=auto build-aux/config.sub debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead mv debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39 cp -f /usr/share/misc/config.sub ./build-aux/config.sub dh_autoreconf -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:58: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:58: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... m4/fftw.m4:35: SINGLE_FFTW2 is expanded from... configure.ac:58: the top level configure.ac:116: warning: AC_OUTPUT should be used without arguments. configure.ac:116: You should run autoupdate. configure.ac:10: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' clipper/Makefile.am: installing 'build-aux/depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... unsupported checking for g++ option to enable C++98 features... none needed checking dependency style of g++... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for g77... no checking for xlf... no checking for f77... f77 checking whether the compiler supports GNU Fortran 77... yes checking whether f77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for library containing cos... -lm checking for prefixed single-precision FFTW2 (sfftw.h)... yes checking for the pthreads library -lpthreads... no checking for the pthreads library -lpthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for MMDB_CCIF_Init in -lmmdb2... yes checking for mmdb2/mmdb_manager.h... yes checking for ccp4_banner in -lccp4c... yes checking for ccp4/ccp4_general.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating clipper/Makefile config.status: creating clipper/core/Makefile config.status: creating clipper/contrib/Makefile config.status: creating examples/Makefile config.status: creating clipper.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Summary ------------------------------ core: yes contrib: yes phs: yes cns: yes mmdb: yes minimol: yes cif: yes ccp4: yes cctbx: no fortran: yes make[1]: Leaving directory '/<>' dh_auto_build -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in clipper make[3]: Entering directory '/<>/clipper' Making all in core make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c cell.cpp -fPIC -DPIC -o .libs/libclipper_core_la-cell.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c nxmap_operator.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c atomsf.cpp -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c coords.cpp -fPIC -DPIC -o .libs/libclipper_core_la-coords.o In file included from clipper_types.h:49, from cell.h:50, from cell.cpp:44: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from atomsf.h:50, from atomsf.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from fftmap.h:49, from xmap.h:49, from nxmap_operator.h:48, from nxmap_operator.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from coords.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ atomsf.cpp: In member function ‘const clipper::ScatteringFactorsData& clipper::ScatteringFactors::operator[](const clipper::String&) const’: atomsf.cpp:438:82: warning: control reaches end of non-void function [-Wreturn-type] 438 | default: Message::message(Message_fatal("unimplemented type")); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomsf.cpp: In static member function ‘static const clipper::ScatteringFactorsData& clipper::ScatteringFactorsTraits::sf(const clipper::String&, int) [with clipper::ScatteringFactorsType TYPE = clipper::SF_WAASMAIER_KIRFEL]’: atomsf.cpp:406:1: warning: control reaches end of non-void function [-Wreturn-type] 406 | } | ^ atomsf.cpp: In static member function ‘static const clipper::ScatteringFactorsData& clipper::ScatteringFactorsTraits::sf(const clipper::String&, int) [with clipper::ScatteringFactorsType TYPE = clipper::SF_ELECTRON]’: atomsf.cpp:406:1: warning: control reaches end of non-void function [-Wreturn-type] In file included from /usr/include/c++/13/vector:72, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::Mat33sym<>; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::Mat33sym<>; _Alloc = std::allocator >]’, inlined from ‘void clipper::AtomShapeFn::init(const clipper::Coord_orth&, const clipper::String&, const clipper::U_aniso_orth&, clipper::ftype)’ at atomsf.cpp:510:16: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool clipper::AtomShapeFn::rho_grad(const clipper::Coord_orth&, std::vector&) const’ at atomsf.cpp:744:51: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool clipper::AtomShapeFn::rho_curv(const clipper::Coord_orth&, clipper::ftype&, std::vector&, clipper::Matrix&) const’ at atomsf.cpp:676:51: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c derivs.cpp -fPIC -DPIC -o .libs/libclipper_core_la-derivs.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from derivs.h:49, from derivs.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool clipper::AtomShapeFn::rho_grad(const clipper::Coord_orth&, clipper::ftype&, std::vector&) const’ at atomsf.cpp:593:51: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool clipper::AtomShapeFn::rho_grad(const clipper::Coord_orth&, clipper::ftype&, std::vector&) const’ at atomsf.cpp:618:51: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c ramachandran.cpp -fPIC -DPIC -o .libs/libclipper_core_la-ramachandran.o In file included from clipper_types.h:49, from ramachandran.h:49, from ramachandran.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c clipper_instance.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_instance.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from clipper_instance.h:49, from clipper_instance.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c fftmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap.o In file included from /usr/include/c++/13/vector:72, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from fftmap.h:49, from fftmap.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at clipper_types.h:406:27, inlined from ‘std::vector clipper::Matrix::eigen(bool) [with T = double]’ at clipper_types.h:614:10: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at clipper_types.h:406:27, inlined from ‘clipper::RTop_orth::RTop_orth(const std::vector&, const std::vector&)’ at coords.cpp:127:27: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at clipper_types.h:406:27, inlined from ‘clipper::RTop_orth::RTop_orth(const std::vector&, const std::vector&, const std::vector&)’ at coords.cpp:186:27: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c resol_basisfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_basisfn.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from resol_fn.h:48, from resol_basisfn.h:48, from resol_basisfn.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/13/vector:72, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Prob_phi_2d::init(const int&)’ at ramachandran.cpp:37255:15: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c clipper_memory.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_memory.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c fftmap_sparse.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap_sparse.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from fftmap.h:49, from fftmap_sparse.h:49, from fftmap_sparse.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c resol_fn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_fn.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from resol_fn.h:48, from resol_fn.cpp:44: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c clipper_message.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_message.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c hkl_compute.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_compute.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from hkl_compute.h:48, from hkl_compute.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/13/vector:72, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at clipper_types.h:403:27, inlined from ‘clipper::ResolutionFn::ResolutionFn(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)’ at resol_fn.cpp:160:36: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at clipper_types.h:403:27, inlined from ‘clipper::ResolutionFn::ResolutionFn(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)’ at resol_fn.cpp:161:36: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘clipper::ResolutionFn::ResolutionFn(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)’ at resol_fn.cpp:164:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at clipper_types.h:403:27, inlined from ‘clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)’ at resol_fn.cpp:220:36: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at clipper_types.h:403:27, inlined from ‘clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)’ at resol_fn.cpp:221:36: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)’ at resol_fn.cpp:225:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-clipper_stats.lo `test -f 'clipper_stats.cpp' || echo './'`clipper_stats.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c resol_targetfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_targetfn.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-hkl_data.lo `test -f 'hkl_data.cpp' || echo './'`hkl_data.cpp In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from resol_fn.h:48, from resol_basisfn.h:48, from resol_targetfn.h:48, from resol_targetfn.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c clipper_stats.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_stats.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c hkl_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_data.o In file included from clipper_types.h:49, from clipper_stats.h:49, from clipper_stats.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_data.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/13/vector:72, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Generic_ordinal::init(const clipper::Range&, int)’ at clipper_stats.cpp:80:14: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Generic_ordinal::init(int)’ at clipper_stats.cpp:153:14: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-rotation.lo `test -f 'rotation.cpp' || echo './'`rotation.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c rotation.cpp -fPIC -DPIC -o .libs/libclipper_core_la-rotation.o In file included from clipper_types.h:49, from rotation.h:49, from rotation.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-clipper_test.lo `test -f 'clipper_test.cpp' || echo './'`clipper_test.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c clipper_test.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_test.o In file included from clipper_types.h:49, from clipper_test.h:49, from clipper_test.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-hkl_datatypes.lo `test -f 'hkl_datatypes.cpp' || echo './'`hkl_datatypes.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c hkl_datatypes.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_datatypes.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-spacegroup.lo `test -f 'spacegroup.cpp' || echo './'`spacegroup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c spacegroup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from hkl_datatypes.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from symop.h:49, from spacegroup.h:50, from spacegroup.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-clipper_types.lo `test -f 'clipper_types.cpp' || echo './'`clipper_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c clipper_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_types.o In file included from clipper_types.h:49, from clipper_types.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-hkl_info.lo `test -f 'hkl_info.cpp' || echo './'`hkl_info.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c hkl_info.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_info.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_info.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-spacegroup_data.lo `test -f 'spacegroup_data.cpp' || echo './'`spacegroup_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c spacegroup_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup_data.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-clipper_util.lo `test -f 'clipper_util.cpp' || echo './'`clipper_util.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c clipper_util.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_util.o In file included from clipper_util.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-hkl_lookup.lo `test -f 'hkl_lookup.cpp' || echo './'`hkl_lookup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c hkl_lookup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_lookup.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_lookup.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/13/vector:72, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Vec3; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 450 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Symop; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/13/algorithm:61, from spacegroup.cpp:47: /usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = clipper::Vec3; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Vec3; _Alloc = std::allocator >]’, inlined from ‘clipper::Vec3 clipper::real_asu(const Spgr_descr::Symop_codes&)’ at spacegroup.cpp:758:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = clipper::Compare_grid]’ at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from ‘clipper::Vec3 clipper::real_asu(const Spgr_descr::Symop_codes&)’ at spacegroup.cpp:759:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = clipper::Compare_grid]’ at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from ‘clipper::Vec3 clipper::real_asu(const Spgr_descr::Symop_codes&)’ at spacegroup.cpp:759:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-symop.lo `test -f 'symop.cpp' || echo './'`symop.cpp In file included from /usr/include/c++/13/vector:72, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at clipper_types.h:406:27: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at clipper_types.h:403:27: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c symop.cpp -fPIC -DPIC -o .libs/libclipper_core_la-symop.o In file included from clipper_types.h:49, from symop.h:49, from symop.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Symop; _Alloc = std::allocator]’, inlined from ‘clipper::Spgr_cacheobj::Spgr_cacheobj(const Key&)’ at spacegroup.cpp:827:21: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at clipper_types.h:406:27, inlined from ‘std::vector clipper::Matrix::eigen(bool) [with T = double]’ at clipper_types.h:614:10: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-container.lo `test -f 'container.cpp' || echo './'`container.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c container.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from container.h:49, from container.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-hkl_operators.lo `test -f 'hkl_operators.cpp' || echo './'`hkl_operators.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c hkl_operators.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_operators.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-container_hkl.lo `test -f 'container_hkl.cpp' || echo './'`container_hkl.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c container_hkl.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_hkl.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from hkl_operators.h:48, from hkl_operators.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from container.h:49, from container_types.h:49, from container_hkl.h:49, from container_hkl.cpp:42: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-map_interp.lo `test -f 'map_interp.cpp' || echo './'`map_interp.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c map_interp.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_interp.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from derivs.h:49, from map_interp.h:48, from map_interp.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-container_map.lo `test -f 'container_map.cpp' || echo './'`container_map.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c container_map.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_map.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from container.h:49, from container_types.h:49, from container_map.h:49, from container_map.cpp:42: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-map_utils.lo `test -f 'map_utils.cpp' || echo './'`map_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c map_utils.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_utils.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from derivs.h:49, from map_utils.h:49, from map_utils.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-xmap.lo `test -f 'xmap.cpp' || echo './'`xmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c xmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-xmap.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from fftmap.h:49, from xmap.h:49, from xmap.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-container_types.lo `test -f 'container_types.cpp' || echo './'`container_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c container_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_types.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from container.h:49, from container_types.h:49, from container_types.cpp:42: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-nxmap.lo `test -f 'nxmap.cpp' || echo './'`nxmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c nxmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-clipper_thread.lo `test -f 'clipper_thread.cpp' || echo './'`clipper_thread.cpp In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from derivs.h:49, from nxmap.h:49, from nxmap.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c clipper_thread.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_thread.o In file included from /usr/include/c++/13/vector:72, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 180]’ at hkl_operators.cpp:241:13: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 180]’ at hkl_operators.cpp:245:13: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 360]’ at hkl_operators.cpp:241:13: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 360]’ at hkl_operators.cpp:245:13: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 72]’ at hkl_operators.cpp:241:13: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 72]’ at hkl_operators.cpp:245:13: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 24]’ at hkl_operators.cpp:241:13: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 24]’ at hkl_operators.cpp:245:13: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-test_core.lo `test -f 'test_core.cpp' || echo './'`test_core.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c test_core.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_core.o In file included from clipper_types.h:49, from clipper_test.h:49, from test_core.h:49, from test_core.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o libclipper_core_la-test_data.lo `test -f 'test_data.cpp' || echo './'`test_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c test_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_data.o /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]’, inlined from ‘void clipper::HKL_data::update() [with T = clipper::datatypes::F_phi]’ at hkl_data.h:413:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from test_data.h:49, from test_data.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]’, inlined from ‘void clipper::HKL_data::update() [with T = clipper::datatypes::ABCD]’ at hkl_data.h:413:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:65, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/13/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]’: /usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 450 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’, inlined from ‘clipper::data::Test_data::Test_data()’ at test_data.cpp:2555:16: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; _Tp = clipper::Atom]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:606:31, inlined from ‘clipper::Atom_list::Atom_list(const std::vector&)’ at coords.h:668:74, inlined from ‘clipper::data::Test_data::Test_data()’ at test_data.cpp:2557:11: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; _Tp = clipper::Atom]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = clipper::Atom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:1622:35, inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:238:44, inlined from ‘clipper::Atom_list& clipper::Atom_list::operator=(const clipper::Atom_list&)’ at coords.h:662:9, inlined from ‘clipper::data::Test_data::Test_data()’ at test_data.cpp:2557:24: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]’ at xmap.h:364:156: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]’ at xmap.h:364:156, inlined from ‘clipper::Xmap::Xmap(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]’ at xmap.h:362:97: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from test_core.cpp:52: /usr/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 450 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool clipper::Test_core::operator()()’ at test_core.cpp:145:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘bool clipper::Test_core::operator()()’ at test_core.cpp:152:14: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘bool clipper::Test_core::operator()()’ at test_core.cpp:152:14: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at resol_fn.h:86:46, inlined from ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at resol_basisfn.h:136:120, inlined from ‘bool clipper::Test_core::operator()()’ at test_core.cpp:160:38: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at clipper_types.h:403:27, inlined from ‘bool clipper::Test_core::operator()()’ at test_core.cpp:212:29: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at clipper_types.h:403:27, inlined from ‘bool clipper::Test_core::operator()()’ at test_core.cpp:260:24: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libclipper-core.la -rpath /usr/lib/arm-linux-gnueabihf libclipper_core_la-atomsf.lo libclipper_core_la-coords.lo libclipper_core_la-nxmap_operator.lo libclipper_core_la-cell.lo libclipper_core_la-derivs.lo libclipper_core_la-ramachandran.lo libclipper_core_la-clipper_instance.lo libclipper_core_la-fftmap.lo libclipper_core_la-resol_basisfn.lo libclipper_core_la-clipper_memory.lo libclipper_core_la-fftmap_sparse.lo libclipper_core_la-resol_fn.lo libclipper_core_la-clipper_message.lo libclipper_core_la-hkl_compute.lo libclipper_core_la-resol_targetfn.lo libclipper_core_la-clipper_stats.lo libclipper_core_la-hkl_data.lo libclipper_core_la-rotation.lo libclipper_core_la-clipper_test.lo libclipper_core_la-hkl_datatypes.lo libclipper_core_la-spacegroup.lo libclipper_core_la-clipper_types.lo libclipper_core_la-hkl_info.lo libclipper_core_la-spacegroup_data.lo libclipper_core_la-clipper_util.lo libclipper_core_la-hkl_lookup.lo libclipper_core_la-symop.lo libclipper_core_la-container.lo libclipper_core_la-hkl_operators.lo libclipper_core_la-container_hkl.lo libclipper_core_la-map_interp.lo libclipper_core_la-container_map.lo libclipper_core_la-map_utils.lo libclipper_core_la-xmap.lo libclipper_core_la-container_types.lo libclipper_core_la-nxmap.lo libclipper_core_la-clipper_thread.lo libclipper_core_la-test_core.lo libclipper_core_la-test_data.lo -lsrfftw -lsfftw -lpthread -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o .libs/libclipper_core_la-atomsf.o .libs/libclipper_core_la-coords.o .libs/libclipper_core_la-nxmap_operator.o .libs/libclipper_core_la-cell.o .libs/libclipper_core_la-derivs.o .libs/libclipper_core_la-ramachandran.o .libs/libclipper_core_la-clipper_instance.o .libs/libclipper_core_la-fftmap.o .libs/libclipper_core_la-resol_basisfn.o .libs/libclipper_core_la-clipper_memory.o .libs/libclipper_core_la-fftmap_sparse.o .libs/libclipper_core_la-resol_fn.o .libs/libclipper_core_la-clipper_message.o .libs/libclipper_core_la-hkl_compute.o .libs/libclipper_core_la-resol_targetfn.o .libs/libclipper_core_la-clipper_stats.o .libs/libclipper_core_la-hkl_data.o .libs/libclipper_core_la-rotation.o .libs/libclipper_core_la-clipper_test.o .libs/libclipper_core_la-hkl_datatypes.o .libs/libclipper_core_la-spacegroup.o .libs/libclipper_core_la-clipper_types.o .libs/libclipper_core_la-hkl_info.o .libs/libclipper_core_la-spacegroup_data.o .libs/libclipper_core_la-clipper_util.o .libs/libclipper_core_la-hkl_lookup.o .libs/libclipper_core_la-symop.o .libs/libclipper_core_la-container.o .libs/libclipper_core_la-hkl_operators.o .libs/libclipper_core_la-container_hkl.o .libs/libclipper_core_la-map_interp.o .libs/libclipper_core_la-container_map.o .libs/libclipper_core_la-map_utils.o .libs/libclipper_core_la-xmap.o .libs/libclipper_core_la-container_types.o .libs/libclipper_core_la-nxmap.o .libs/libclipper_core_la-clipper_thread.o .libs/libclipper_core_la-test_core.o .libs/libclipper_core_la-test_data.o -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-core.so.2 -o .libs/libclipper-core.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-core.so.2" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-core.so" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so") libtool: link: ( cd ".libs" && rm -f "libclipper-core.la" && ln -s "../libclipper-core.la" "libclipper-core.la" ) make[4]: Leaving directory '/<>/clipper/core' Making all in contrib make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o convolution_search.lo convolution_search.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o sfcalc.lo sfcalc.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o edcalc.lo edcalc.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o sfcalc_obs.lo sfcalc_obs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c convolution_search.cpp -fPIC -DPIC -o .libs/convolution_search.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c sfcalc.cpp -fPIC -DPIC -o .libs/sfcalc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c edcalc.cpp -fPIC -DPIC -o .libs/edcalc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c sfcalc_obs.cpp -fPIC -DPIC -o .libs/sfcalc_obs.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from convolution_search.h:50, from convolution_search.cpp:42: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from edcalc.h:50, from edcalc.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfcalc.h:50, from sfcalc.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfcalc_obs.h:49, from sfcalc_obs.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]’ at ../core/nxmap.h:367:63, inlined from ‘clipper::NXmap::NXmap(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]’ at ../core/nxmap.h:349:11, inlined from ‘bool clipper::Convolution_search_slow::operator()(clipper::Xmap&, const clipper::NXmap&, const clipper::NX_operator&) const [with T = double]’ at convolution_search.cpp:81:12: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_info&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:134:114: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:65: /usr/include/c++/13/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]’: /usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o fffear.lo fffear.cpp In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; _Tp = clipper::Atom]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:606:31, inlined from ‘clipper::Atom_list::Atom_list(const clipper::Atom_list&)’ at ../core/coords.h:662:9, inlined from ‘bool clipper::SFcalc_obs_bulk::operator()(clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::Atom_list&) [with T = float]’ at sfcalc_obs.cpp:59:13: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c fffear.cpp -fPIC -DPIC -o .libs/fffear.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from fffear.h:50, from fffear.cpp:42: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o sfscale.lo sfscale.cpp In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]’, inlined from ‘void clipper::HKL_data::update() [with T = clipper::datatypes::F_phi]’ at ../core/hkl_data.h:413:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c sfscale.cpp -fPIC -DPIC -o .libs/sfscale.o In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; _Tp = clipper::Atom]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:606:31, inlined from ‘clipper::Atom_list::Atom_list(const clipper::Atom_list&)’ at ../core/coords.h:662:9, inlined from ‘bool clipper::SFcalc_obs_bulk::operator()(clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::Atom_list&) [with T = double]’ at sfcalc_obs.cpp:59:13: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfscale.h:49, from sfscale.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o function_object_bases.lo function_object_bases.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c function_object_bases.cpp -fPIC -DPIC -o .libs/function_object_bases.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from function_object_bases.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o sfweight.lo sfweight.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c sfweight.cpp -fPIC -DPIC -o .libs/sfweight.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o mapfilter.lo mapfilter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c mapfilter.cpp -fPIC -DPIC -o .libs/mapfilter.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from mapfilter.h:50, from mapfilter.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]’ at ../core/nxmap.h:367:63, inlined from ‘clipper::NXmap::NXmap(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]’ at ../core/nxmap.h:349:11: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::NXmap::init(const clipper::Grid&, const clipper::RTop<>&) [with T = double]’ at ../core/nxmap.h:357:48, inlined from ‘bool clipper::MapFilter_fft::operator()(clipper::NXmap&, const clipper::NXmap&) const [with T = double]’ at mapfilter.cpp:317:14: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘std::vector clipper::Matrix::eigen(bool) [with T = double]’ at ../core/clipper_types.h:614:10: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]’ at ../core/xmap.h:364:156, inlined from ‘bool clipper::MapFilter_slow::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]’ at mapfilter.cpp:74:14: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]’ at ../core/nxmap.h:367:63, inlined from ‘clipper::NXmap::NXmap(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]’ at ../core/nxmap.h:349:11, inlined from ‘bool clipper::MapFilter_slow::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]’ at mapfilter.cpp:91:12: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()’ at ../core/resol_basisfn.h:233:52: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o skeleton.lo skeleton.cpp In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]’ at ../core/xmap.h:364:156, inlined from ‘bool clipper::MapFilter_fft::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]’ at mapfilter.cpp:206:14: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c skeleton.cpp -fPIC -DPIC -o .libs/skeleton.o In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_binner::BasisFn_binner(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:82:120, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_binner; T = float]’ at sfscale.cpp:181:7: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:403:27, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_binner; T = float]’ at sfscale.cpp:228:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from skeleton.h:50, from skeleton.cpp:42: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o originmatch.lo originmatch.cpp In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_linear::BasisFn_linear(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:109:120, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_linear; T = float]’ at sfscale.cpp:181:7: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:403:27, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_linear; T = float]’ at sfscale.cpp:228:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c originmatch.cpp -fPIC -DPIC -o .libs/originmatch.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from originmatch.h:49, from originmatch.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:136:120, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_spline; T = float]’ at sfscale.cpp:181:7: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:403:27, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_spline; T = float]’ at sfscale.cpp:228:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()’ at ../core/resol_basisfn.h:233:52, inlined from ‘bool clipper::SFscale_aniso::operator()(clipper::HKL_data >&, const clipper::HKL_data >&) [with T = float]’ at sfscale.cpp:68:30: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()’ at ../core/resol_basisfn.h:233:52, inlined from ‘bool clipper::SFscale_aniso::operator()(clipper::HKL_data >&, const clipper::HKL_data >&) [with T = float]’ at sfscale.cpp:99:30: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::HLterms, std::allocator::HLterms> >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_binner::BasisFn_binner(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:82:120, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_binner; T = float]’ at sfscale.cpp:181:7: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:403:27, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_binner; T = float]’ at sfscale.cpp:228:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]’, inlined from ‘void clipper::SFweight_spline::init(int, int, int) [with T = float]’ at sfweight.cpp:176:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::HLterms*, std::vector::HLterms, std::allocator::HLterms> > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::HLterms, std::allocator::HLterms> >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_linear::BasisFn_linear(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:109:120, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_linear; T = float]’ at sfscale.cpp:181:7: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:403:27, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_linear; T = float]’ at sfscale.cpp:228:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]’, inlined from ‘void clipper::SFweight_spline::init(int, int, int) [with T = double]’ at sfweight.cpp:176:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::HLterms*, std::vector::HLterms, std::allocator::HLterms> > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:136:120: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:136:120, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = float]’ at sfscale.cpp:181:7: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:403:27, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = float]’ at sfscale.cpp:228:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]’, inlined from ‘void clipper::HKL_data::update() [with T = clipper::datatypes::ABCD]’ at ../core/hkl_data.h:413:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]’, inlined from ‘void clipper::HKL_data::update() [with T = clipper::datatypes::F_sigF]’ at ../core/hkl_data.h:413:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_binner::BasisFn_binner(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:82:120, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_binner; T = double]’ at sfscale.cpp:181:7: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:403:27, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_binner; T = double]’ at sfscale.cpp:228:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o test_contrib.lo test_contrib.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c test_contrib.cpp -fPIC -DPIC -o .libs/test_contrib.o In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_linear::BasisFn_linear(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:109:120, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_linear; T = double]’ at sfscale.cpp:181:7: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:403:27, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_linear; T = double]’ at sfscale.cpp:228:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]’ at sfweight.cpp:278:19: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]’ at sfweight.cpp:279:19: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../core/clipper_types.h:49, from ../core/clipper_test.h:49, from test_contrib.h:49, from test_contrib.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:136:120, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_spline; T = double]’ at sfscale.cpp:181:7: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:403:27, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_spline; T = double]’ at sfscale.cpp:228:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]’, inlined from ‘void clipper::HKL_data::update() [with T = clipper::datatypes::F_phi]’ at ../core/hkl_data.h:413:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()’ at ../core/resol_basisfn.h:233:52, inlined from ‘bool clipper::SFscale_aniso::operator()(clipper::HKL_data >&, const clipper::HKL_data >&) [with T = double]’ at sfscale.cpp:68:30: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()’ at ../core/resol_basisfn.h:233:52, inlined from ‘bool clipper::SFscale_aniso::operator()(clipper::HKL_data >&, const clipper::HKL_data >&) [with T = double]’ at sfscale.cpp:99:30: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::I_sigI; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::I_sigI; _Alloc = std::allocator >]’, inlined from ‘void clipper::HKL_data::update() [with T = clipper::datatypes::I_sigI]’ at ../core/hkl_data.h:413:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_binner::BasisFn_binner(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:82:120, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_binner; T = double]’ at sfscale.cpp:181:7: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:403:27, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_binner; T = double]’ at sfscale.cpp:228:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = float]’ at sfweight.cpp:278:19: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = float]’ at sfweight.cpp:279:19: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_linear::BasisFn_linear(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:109:120, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_linear; T = double]’ at sfscale.cpp:181:7: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:403:27, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_linear; T = double]’ at sfscale.cpp:228:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../core/resol_basisfn.h:136:120, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = double]’ at sfscale.cpp:181:7: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at ../core/clipper_types.h:403:27, inlined from ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = double]’ at sfscale.cpp:228:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::E_sigE; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::E_sigE; _Alloc = std::allocator >]’, inlined from ‘void clipper::HKL_data::update() [with T = clipper::datatypes::E_sigE]’ at ../core/hkl_data.h:413:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]’, inlined from ‘void clipper::HKL_data::update() [with T = clipper::datatypes::F_sigF]’ at ../core/hkl_data.h:413:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]’ at sfweight.cpp:222:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]’ at sfweight.cpp:223:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]’ at sfweight.cpp:224:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]’ at sfweight.cpp:225:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]’ at sfweight.cpp:278:19: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]’ at sfweight.cpp:279:19: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = double]’ at sfweight.cpp:222:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = double]’ at sfweight.cpp:223:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = double]’ at sfweight.cpp:224:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = double]’ at sfweight.cpp:225:17: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = double]’ at sfweight.cpp:278:19: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../core/clipper_types.h:406:27, inlined from ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = double]’ at sfweight.cpp:279:19: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 450 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]’, inlined from ‘void clipper::HKL_data::update() [with T = clipper::datatypes::F_phi]’ at ../core/hkl_data.h:413:18: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’, inlined from ‘bool clipper::Test_contrib::operator()()’ at test_contrib.cpp:98:20: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’, inlined from ‘bool clipper::Test_contrib::operator()()’ at test_contrib.cpp:101:20: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’, inlined from ‘bool clipper::Test_contrib::operator()()’ at test_contrib.cpp:104:20: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libclipper-contrib.la -rpath /usr/lib/arm-linux-gnueabihf convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -Wl,-rpath -Wl,/<>/clipper/core/.libs ../core/.libs/libclipper-core.so -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so.2" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so") libtool: link: ( cd ".libs" && rm -f "libclipper-contrib.la" && ln -s "../libclipper-contrib.la" "libclipper-contrib.la" ) make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o mmdb/clipper_mmdb.lo mmdb/clipper_mmdb.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o minimol/minimol.lo minimol/minimol.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o minimol/container_minimol.lo minimol/container_minimol.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o minimol/minimol_data.lo minimol/minimol_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c minimol/minimol.cpp -fPIC -DPIC -o minimol/.libs/minimol.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c minimol/minimol_data.cpp -fPIC -DPIC -o minimol/.libs/minimol_data.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c minimol/container_minimol.cpp -fPIC -DPIC -o minimol/.libs/container_minimol.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c mmdb/clipper_mmdb.cpp -fPIC -DPIC -o mmdb/.libs/clipper_mmdb.o In file included from minimol/../core/clipper_types.h:49, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol.cpp:43: minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from mmdb/../core/clipper_types.h:49, from mmdb/../core/cell.h:50, from mmdb/../core/coords.h:49, from mmdb/clipper_mmdb.h:49, from mmdb/clipper_mmdb.cpp:42: mmdb/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from minimol/../core/clipper_types.h:49, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/../core/container.h:49, from minimol/../core/container_types.h:49, from minimol/container_minimol.h:49, from minimol/container_minimol.cpp:42: minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o minimol/minimol_io.lo minimol/minimol_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c minimol/minimol_io.cpp -fPIC -DPIC -o minimol/.libs/minimol_io.o In file included from minimol/../mmdb/../core/clipper_types.h:49, from minimol/../mmdb/../core/cell.h:50, from minimol/../mmdb/../core/coords.h:49, from minimol/../mmdb/clipper_mmdb.h:49, from minimol/minimol_io.h:49, from minimol/minimol_io.cpp:42: minimol/../mmdb/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o minimol/minimol_seq.lo minimol/minimol_seq.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c minimol/minimol_seq.cpp -fPIC -DPIC -o minimol/.libs/minimol_seq.o In file included from minimol/../core/clipper_types.h:49, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol_seq.h:49, from minimol/minimol_seq.cpp:42: minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/13/vector:72, from mmdb/../core/clipper_memory.h:50, from mmdb/../core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 450 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’, inlined from ‘clipper::MMDBAtom_list::MMDBAtom_list(clipper::mmdb::PPCAtom, int)’ at mmdb/clipper_mmdb.cpp:330:14: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o minimol/minimol_utils.lo minimol/minimol_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c minimol/minimol_utils.cpp -fPIC -DPIC -o minimol/.libs/minimol_utils.o In file included from minimol/../core/clipper_types.h:49, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol_utils.h:49, from minimol/minimol_utils.cpp:43: minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o phs/phs_io.lo phs/phs_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c phs/phs_io.cpp -fPIC -DPIC -o phs/.libs/phs_io.o In file included from phs/../core/clipper_types.h:49, from phs/../core/cell.h:50, from phs/../core/coords.h:49, from phs/../core/hkl_lookup.h:49, from phs/../core/hkl_info.h:49, from phs/../core/hkl_data.h:49, from phs/../core/hkl_datatypes.h:49, from phs/phs_io.h:49, from phs/phs_io.cpp:42: phs/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/13/vector:72, from minimol/../core/clipper_memory.h:50, from minimol/../core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 181 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:65: /usr/include/c++/13/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]’: /usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:606:31, inlined from ‘clipper::MMonomer::MMonomer(const clipper::MMonomer&)’ at minimol/minimol.h:136:8: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:606:31, inlined from ‘clipper::MMonomer::MMonomer(const clipper::MMonomer&)’ at minimol/minimol.h:136:8, inlined from ‘void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]’ at /usr/include/c++/13/bits/stl_construct.h:128:7, inlined from ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MMonomer*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:120:21: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 450 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’, inlined from ‘void clipper::MMonomer::insert(const clipper::MAtom&, int)’ at minimol/minimol.cpp:241:35: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(iterator, const value_type&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’, inlined from ‘void clipper::MMonomer::insert(const clipper::MAtom&, int)’ at minimol/minimol.cpp:242:22, inlined from ‘void clipper::MMonomer::insert(const clipper::MAtom&, int)’ at minimol/minimol.cpp:239:6: /usr/include/c++/13/bits/vector.tcc:172:26: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 172 | _M_realloc_insert(__position, __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(iterator) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’, inlined from ‘void clipper::MMonomer::protein_mainchain_build_carbonyl_oxygen(const clipper::MMonomer&)’ at minimol/minimol.cpp:735:31: /usr/include/c++/13/bits/stl_vector.h:1538:24: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 1538 | { return _M_erase(__position); } | ~~~~~~~~^~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(iterator) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’, inlined from ‘void clipper::MMonomer::protein_mainchain_build_carbonyl_oxygen()’ at minimol/minimol.cpp:767:31: /usr/include/c++/13/bits/stl_vector.h:1538:24: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 1538 | { return _M_erase(__position); } | ~~~~~~~~^~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(iterator) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’, inlined from ‘clipper::ftype clipper::MMonomer::protein_sidechain_build_rotamer(const int&, TYPE)’ at minimol/minimol.cpp:833:20: /usr/include/c++/13/bits/stl_vector.h:1538:24: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 1538 | { return _M_erase(__position); } | ~~~~~~~~^~~~~~~~~~~~ In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = clipper::MAtom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:1622:35, inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:238:44: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:65, from minimol/../mmdb/../core/clipper_memory.h:50, from minimol/../mmdb/../core/clipper_types.h:50: /usr/include/c++/13/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]’: /usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:606:31, inlined from ‘clipper::MMonomer::MMonomer(const clipper::MMonomer&)’ at minimol/minimol.h:136:8, inlined from ‘void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]’ at /usr/include/c++/13/bits/stl_construct.h:128:7, inlined from ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:120:21: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o cif/cif_data_io.lo cif/cif_data_io.cpp In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = clipper::MAtom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:1622:35, inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:238:44: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c cif/cif_data_io.cpp -fPIC -DPIC -o cif/.libs/cif_data_io.o In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:606:31, inlined from ‘clipper::MMonomer::MMonomer(const clipper::MMonomer&)’ at minimol/minimol.h:136:8, inlined from ‘void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]’ at /usr/include/c++/13/bits/stl_construct.h:128:7, inlined from ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MMonomer*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:120:21: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cif/../core/clipper_types.h:49, from cif/../core/cell.h:50, from cif/../core/coords.h:49, from cif/../core/hkl_lookup.h:49, from cif/../core/hkl_info.h:49, from cif/../core/hkl_data.h:49, from cif/../core/hkl_datatypes.h:49, from cif/cif_data_io.h:48, from cif/cif_data_io.cpp:44: cif/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:606:31, inlined from ‘clipper::MMonomer::MMonomer(const clipper::MMonomer&)’ at minimol/minimol.h:136:8, inlined from ‘void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]’ at /usr/include/c++/13/bits/stl_construct.h:128:7, inlined from ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:120:21, inlined from ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*; bool _TrivialValueTypes = false]’ at /usr/include/c++/13/bits/stl_uninitialized.h:137:32, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*; _Tp = clipper::MMonomer]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MMonomer; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:257:35: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’, inlined from ‘clipper::MMonomer& clipper::MMonomer::copy(const clipper::MMonomer&, const clipper::MM::COPY&)’ at minimol/minimol.cpp:291:19: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:606:31, inlined from ‘clipper::MMonomer::MMonomer(const clipper::MMonomer&)’ at minimol/minimol.h:136:8, inlined from ‘void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]’ at /usr/include/c++/13/bits/stl_construct.h:128:7, inlined from ‘_ForwardIterator std::__do_uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = clipper::MMonomer*; _Size = unsigned int; _Tp = clipper::MMonomer]’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c ccp4/ccp4_mtz_types.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_types.o In file included from ccp4/../core/clipper_types.h:49, from ccp4/../core/cell.h:50, from ccp4/../core/coords.h:49, from ccp4/../core/container.h:49, from ccp4/../core/container_types.h:49, from ccp4/../core/container_hkl.h:49, from ccp4/ccp4_mtz_types.h:49, from ccp4/ccp4_mtz_types.cpp:43: ccp4/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o ccp4/ccp4_mtz_io.lo ccp4/ccp4_mtz_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c ccp4/ccp4_mtz_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_io.o In file included from ccp4/../core/clipper_types.h:49, from ccp4/../core/cell.h:50, from ccp4/../core/coords.h:49, from ccp4/../core/container.h:49, from ccp4/../core/container_types.h:49, from ccp4/../core/container_hkl.h:49, from ccp4/ccp4_mtz_types.h:49, from ccp4/ccp4_mtz_io.h:49, from ccp4/ccp4_mtz_io.cpp:42: ccp4/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/13/vector:72, from cif/../core/clipper_memory.h:50, from cif/../core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 450 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘int clipper::CIFfile::set_cell_symm_reso_by_kludge(std::string)’ at cif/cif_data_io.cpp:909:22: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o ccp4/ccp4_map_io.lo ccp4/ccp4_map_io.cpp /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 450 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’, inlined from ‘clipper::Atom_list clipper::MMonomer::atom_list() const’ at minimol/minimol.cpp:150:18: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c ccp4/ccp4_map_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_map_io.o In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’, inlined from ‘clipper::Atom_list clipper::MModel::atom_list() const’ at minimol/minimol.cpp:485:22: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ccp4/../core/clipper_types.h:49, from ccp4/../core/cell.h:50, from ccp4/../core/coords.h:49, from ccp4/../core/container.h:49, from ccp4/../core/container_types.h:49, from ccp4/../core/container_map.h:49, from ccp4/ccp4_map_io.h:49, from ccp4/ccp4_map_io.cpp:43: ccp4/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’, inlined from ‘clipper::Atom_list clipper::MPolymer::atom_list() const’ at minimol/minimol.cpp:320:20: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o ccp4/ccp4_utils.lo ccp4/ccp4_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c ccp4/ccp4_utils.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_utils.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o cns/cns_hkl_io.lo cns/cns_hkl_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c cns/cns_hkl_io.cpp -fPIC -DPIC -o cns/.libs/cns_hkl_io.o In file included from cns/../core/clipper_types.h:49, from cns/../core/cell.h:50, from cns/../core/coords.h:49, from cns/../core/hkl_lookup.h:49, from cns/../core/hkl_info.h:49, from cns/../core/hkl_data.h:49, from cns/../core/hkl_datatypes.h:49, from cns/cns_hkl_io.h:49, from cns/cns_hkl_io.cpp:42: cns/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o cns/cns_map_io.lo cns/cns_map_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c cns/cns_map_io.cpp -fPIC -DPIC -o cns/.libs/cns_map_io.o In file included from cns/../core/clipper_types.h:49, from cns/../core/cell.h:50, from cns/../core/coords.h:49, from cns/../core/container.h:49, from cns/../core/container_types.h:49, from cns/../core/container_map.h:49, from cns/cns_map_io.h:49, from cns/cns_map_io.cpp:43: cns/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned char]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = char]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short unsigned int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = float]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = double]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned char]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = char]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short unsigned int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ccp4/../core/clipper_memory.h:50, from ccp4/../core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = float]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = double]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = float]’: cns/cns_map_io.cpp:497:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 497 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 500 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 504 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 507 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 518 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 536 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 544 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 553 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = double]’: cns/cns_map_io.cpp:497:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 497 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 500 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 504 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 507 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 518 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 536 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 544 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 553 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::CCP4MTZfile::crystalinf; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 450 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::CCP4MTZfile::crystalinf; _Alloc = std::allocator]’, inlined from ‘void clipper::CCP4MTZfile::export_crystal(const clipper::MTZcrystal&, clipper::String)’ at ccp4/ccp4_mtz_io.cpp:1086:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::CCP4MTZfile::datasetinf; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 450 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::CCP4MTZfile::datasetinf; _Alloc = std::allocator]’, inlined from ‘void clipper::CCP4MTZfile::export_dataset(const clipper::MTZdataset&, clipper::String)’ at ccp4/ccp4_mtz_io.cpp:1097:35: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o fortran/f_interface.lo fortran/f_interface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c fortran/f_interface.cpp -fPIC -DPIC -o fortran/.libs/f_interface.o In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from fortran/f_interface.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::CCP4MTZfile::crystalinf; _Alloc = std::allocator]’, inlined from ‘void clipper::read_hierarchy(CMtz::MTZ*, std::vector&)’ at ccp4/ccp4_mtz_io.cpp:323:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::CCP4MTZfile::datasetinf; _Alloc = std::allocator]’, inlined from ‘void clipper::read_hierarchy(CMtz::MTZ*, std::vector&)’ at ccp4/ccp4_mtz_io.cpp:327:41: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::CCP4MTZfile::crystalinf; _Alloc = std::allocator]’, inlined from ‘void clipper::CCP4MTZfile::open_write(clipper::String)’ at ccp4/ccp4_mtz_io.cpp:629:21: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::CCP4MTZfile::datasetinf; _Alloc = std::allocator]’, inlined from ‘void clipper::CCP4MTZfile::open_write(clipper::String)’ at ccp4/ccp4_mtz_io.cpp:630:33: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::reference_cols(CMtz::MTZ*, std::vector, std::vector >, std::vector >&, std::vector >&)’ at ccp4/ccp4_mtz_io.cpp:384:21: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 450 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’, inlined from ‘void sfcalc_(const int*, const float*, const int*, const float*, const float*, const float*, const float*, const float*, const int*, const int*, const int*, const int*, const int*, float*, float*)’ at fortran/f_interface.cpp:35:22: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ccp4/../core/clipper_memory.h:50, from ccp4/../core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o mmdb/libclipper-mmdb.la -rpath /usr/lib/arm-linux-gnueabihf mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]’ at ccp4/../core/xmap.h:364:156, inlined from ‘void clipper::CCP4MAPfile::import_xmap(clipper::Xmap&) const [with T = double]’ at ccp4/ccp4_map_io.cpp:212:12: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o mmdb/.libs/clipper_mmdb.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]’ at ccp4/../core/xmap.h:364:156, inlined from ‘clipper::CCP4MAPfile::ASUerror clipper::CCP4MAPfile::import_xmap_check_asu(clipper::Xmap&, T) const [with T = double]’ at ccp4/ccp4_map_io.cpp:497:12: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so.2" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so.2") libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so") libtool: link: ( cd "mmdb/.libs" && rm -f "libclipper-mmdb.la" && ln -s "../libclipper-mmdb.la" "libclipper-mmdb.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o phs/libclipper-phs.la -rpath /usr/lib/arm-linux-gnueabihf phs/phs_io.lo core/libclipper-core.la -lm In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]’ at ccp4/../core/nxmap.h:367:63, inlined from ‘void clipper::CCP4MAPfile::import_nxmap(clipper::NXmap&) const [with T = double]’ at ccp4/ccp4_map_io.cpp:342:13: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o phs/.libs/phs_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so.2" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so.2") libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so") libtool: link: ( cd "phs/.libs" && rm -f "libclipper-phs.la" && ln -s "../libclipper-phs.la" "libclipper-phs.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o cif/libclipper-cif.la -rpath /usr/lib/arm-linux-gnueabihf cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o cif/.libs/cif_data_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so.2" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so.2") libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so") libtool: link: ( cd "cif/.libs" && rm -f "libclipper-cif.la" && ln -s "../libclipper-cif.la" "libclipper-cif.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fortran/libclipper-fortran.la -rpath /usr/lib/arm-linux-gnueabihf fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o fortran/.libs/f_interface.o -Wl,-rpath -Wl,/<>/clipper/core/.libs -Wl,-rpath -Wl,/<>/clipper/contrib/.libs core/.libs/libclipper-core.so contrib/.libs/libclipper-contrib.so -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o minimol/libclipper-minimol.la -rpath /usr/lib/arm-linux-gnueabihf minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so.2" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so.2") libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so") libtool: link: ( cd "fortran/.libs" && rm -f "libclipper-fortran.la" && ln -s "../libclipper-fortran.la" "libclipper-fortran.la" ) libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -Wl,-rpath -Wl,/<>/clipper/core/.libs -Wl,-rpath -Wl,/<>/clipper/mmdb/.libs core/.libs/libclipper-core.so mmdb/.libs/libclipper-mmdb.so -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so.2" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so.2") libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so") libtool: link: ( cd "minimol/.libs" && rm -f "libclipper-minimol.la" && ln -s "../libclipper-minimol.la" "libclipper-minimol.la" ) In file included from /usr/include/c++/13/vector:72, from cns/../core/clipper_memory.h:50, from cns/../core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]’ at cns/../core/nxmap.h:367:63, inlined from ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = double]’ at cns/cns_map_io.cpp:361:13: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]’ at cns/../core/xmap.h:364:156, inlined from ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = double]’ at cns/cns_map_io.cpp:527:12: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ccp4/libclipper-ccp4.la -rpath /usr/lib/arm-linux-gnueabihf ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]’ at cns/../core/xmap.h:364:156, inlined from ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = double]’ at cns/cns_map_io.cpp:232:12: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -lccp4c -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2") libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libclipper-ccp4.la" && ln -s "../libclipper-ccp4.la" "libclipper-ccp4.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o cns/libclipper-cns.la -rpath /usr/lib/arm-linux-gnueabihf cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so.2" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so.2") libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so") libtool: link: ( cd "cns/.libs" && rm -f "libclipper-cns.la" && ln -s "../libclipper-cns.la" "libclipper-cns.la" ) make[4]: Leaving directory '/<>/clipper' make[3]: Leaving directory '/<>/clipper' Making all in examples make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[1]: Entering directory '/<>' Making check in clipper make[2]: Entering directory '/<>/clipper' Making check in core make[3]: Entering directory '/<>/clipper/core' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/clipper/core' Making check in contrib make[3]: Entering directory '/<>/clipper/contrib' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/clipper/contrib' make[3]: Entering directory '/<>/clipper' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>/clipper' make[2]: Leaving directory '/<>/clipper' Making check in examples make[2]: Entering directory '/<>/examples' make rfltest sgtest symtest ccad diffmap maptest mtztest cmaplocal ffttest sktest cnstest cns2mtz maketestdata sftest phstest ciftophs ftndemo make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o rfltest.o rfltest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o sgtest.o sgtest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o symtest.o symtest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o ccad.o ccad.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from rfltest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from sgtest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from symtest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from ccad.cpp:69: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o diffmap.o diffmap.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from diffmap.cpp:5: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o maptest.o maptest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from maptest.cpp:4: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../clipper/core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../clipper/core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../clipper/core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../clipper/core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_info&, const int&, clipper::ftype)’ at ../clipper/core/resol_basisfn.h:134:114, inlined from ‘int main(int, char**)’ at diffmap.cpp:42:64: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o mtztest.o mtztest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o cmaplocal.o cmaplocal.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from mtztest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from cmaplocal.cpp:4: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o ffttest.o ffttest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from ffttest.cpp:6: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o sktest.o sktest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from sktest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o cnstest.o cnstest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from cnstest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../clipper/core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../clipper/core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../clipper/core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../clipper/core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../clipper/core/resol_basisfn.h:136:120: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../clipper/core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../clipper/core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../clipper/core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../clipper/core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_binner::BasisFn_binner(const clipper::HKL_data_base&, const int&, clipper::ftype)’ at ../clipper/core/resol_basisfn.h:82:120, inlined from ‘int main()’ at mtztest.cpp:93:40: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../clipper/core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../clipper/core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../clipper/core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../clipper/core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_gaussian::BasisFn_gaussian()’ at ../clipper/core/resol_basisfn.h:160:42, inlined from ‘int main()’ at mtztest.cpp:96:20: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../clipper/core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../clipper/core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../clipper/core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../clipper/core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_expcubic::BasisFn_expcubic()’ at ../clipper/core/resol_basisfn.h:256:42, inlined from ‘int main()’ at mtztest.cpp:99:20: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o cns2mtz.o cns2mtz.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o maketestdata.o maketestdata.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o sftest.o sftest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from cns2mtz.h:4, from cns2mtz.cpp:9: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from maketestdata.cpp:4: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from sftest.cpp:5: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o phstest.o phstest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from phstest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from sftest.cpp:11: /usr/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -c -o ciftophs.o ciftophs.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from ciftophs.cpp:5: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ f77 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -c -o ftndemo.o ftndemo.f /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o rfltest rfltest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 In file included from /usr/include/c++/13/vector:72, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 450 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sgtest sgtest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]’ at ../clipper/core/clipper_types.h:379:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’ at ../clipper/core/clipper_types.h:406:27, inlined from ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’ at ../clipper/core/resol_fn.h:80:43, inlined from ‘clipper::BasisFn_base::BasisFn_base(const int&)’ at ../clipper/core/resol_fn.h:86:46, inlined from ‘clipper::BasisFn_aniso_gaussian::BasisFn_aniso_gaussian()’ at ../clipper/core/resol_basisfn.h:182:48: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/rfltest rfltest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sgtest sgtest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o symtest symtest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ccad ccad.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/symtest symtest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o diffmap diffmap.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ccad ccad.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void clipper::Array2d::resize(const int&, const int&) [with T = double]’ at ../clipper/core/clipper_types.h:376:40, inlined from ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’ at ../clipper/core/clipper_types.h:403:27, inlined from ‘int main(int, char**)’ at sftest.cpp:244:25: /usr/include/c++/13/bits/stl_vector.h:1058:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at sftest.cpp:269:21: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘int main(int, char**)’ at sftest.cpp:276:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘int main(int, char**)’ at sftest.cpp:276:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o maptest maptest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/diffmap diffmap.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/maptest maptest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o mtztest mtztest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o cmaplocal cmaplocal.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mtztest mtztest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ffttest ffttest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cmaplocal cmaplocal.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sktest sktest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ffttest ffttest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 In file included from /usr/include/c++/13/vector:72, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 450 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sktest sktest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o cnstest cnstest.o ../clipper/cns/libclipper-cns.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o maketestdata maketestdata.o ../clipper/mmdb/libclipper-mmdb.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cnstest cnstest.o ../clipper/cns/.libs/libclipper-cns.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o phstest phstest.o ../clipper/phs/libclipper-phs.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/maketestdata maketestdata.o ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ciftophs ciftophs.o ../clipper/phs/libclipper-phs.la ../clipper/cif/libclipper-cif.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ftndemo ftndemo.o ../clipper/fortran/libclipper-fortran.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/phstest phstest.o ../clipper/phs/.libs/libclipper-phs.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ciftophs ciftophs.o ../clipper/phs/.libs/libclipper-phs.so ../clipper/cif/.libs/libclipper-cif.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ftndemo ftndemo.o ../clipper/fortran/.libs/libclipper-fortran.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm -lmmdb2 /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sftest sftest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data >; _Alloc = std::allocator > >]’: /usr/include/c++/13/bits/vector.tcc:450:5: note: parameter passing for argument of type ‘std::vector > >::iterator’ changed in GCC 7.1 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sftest sftest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’, inlined from ‘int main(int, char**)’ at cns2mtz.cpp:291:17: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’, inlined from ‘int main(int, char**)’ at cns2mtz.cpp:305:20: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’, inlined from ‘int main(int, char**)’ at cns2mtz.cpp:320:17: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’, inlined from ‘int main(int, char**)’ at cns2mtz.cpp:334:20: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’, inlined from ‘int main(int, char**)’ at cns2mtz.cpp:349:19: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’, inlined from ‘int main(int, char**)’ at cns2mtz.cpp:363:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’, inlined from ‘int main(int, char**)’ at cns2mtz.cpp:377:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’, inlined from ‘int main(int, char**)’ at cns2mtz.cpp:390:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]’, inlined from ‘int main(int, char**)’ at cns2mtz.cpp:403:25: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data >; _Alloc = std::allocator > >]’, inlined from ‘int main(int, char**)’ at cns2mtz.cpp:417:25: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o cns2mtz cns2mtz.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cns2mtz cns2mtz.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' rm -fr -- /tmp/dh-xdg-rundir-jjutWXrO create-stamp debian/debhelper-build-stamp dh_testroot -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_prep -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars rm -fr -- debian/.debhelper/generated/libclipper-dev/ debian/libclipper-dev/ debian/tmp/ debian/.debhelper/generated/libclipper2/ debian/libclipper2/ dh_auto_install -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in clipper make[2]: Entering directory '/<>/clipper' Making install in core make[3]: Entering directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libclipper-core.so.2.0.1 /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-core.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 atomsf.h container_types.h nxmap_operator.h cell.h coords.h ramachandran.h clipper_instance.h derivs.h resol_basisfn.h clipper_memory.h fftmap.h resol_fn.h clipper_message.h fftmap_sparse.h resol_targetfn.h clipper_precision.h hkl_compute.h rotation.h clipper_stats.h hkl_data.h spacegroup.h clipper_sysdep.h hkl_datatypes.h spacegroup_data.h clipper_test.h hkl_info.h symop.h clipper_types.h hkl_lookup.h clipper_util.h hkl_operators.h container.h map_interp.h xmap.h container_hkl.h map_utils.h container_map.h nxmap.h clipper_thread.h test_core.h '/<>/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 test_data.h '/<>/debian/tmp/usr/include/clipper/core' make[4]: Leaving directory '/<>/clipper/core' make[3]: Leaving directory '/<>/clipper/core' Making install in contrib make[3]: Entering directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: warning: relinking 'libclipper-contrib.la' libtool: install: (cd /<>/clipper/contrib; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libclipper-contrib.la -rpath /usr/lib/arm-linux-gnueabihf convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: install: /usr/bin/install -c .libs/libclipper-contrib.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-contrib.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/contrib' /usr/bin/install -c -m 644 convolution_search.h mapfilter.h sfscale.h edcalc.h originmatch.h sfweight.h fffear.h sfcalc.h skeleton.h function_object_bases.h sfcalc_obs.h test_contrib.h '/<>/debian/tmp/usr/include/clipper/contrib' make[4]: Leaving directory '/<>/clipper/contrib' make[3]: Leaving directory '/<>/clipper/contrib' make[3]: Entering directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: warning: relinking 'mmdb/libclipper-mmdb.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o mmdb/libclipper-mmdb.la -rpath /usr/lib/arm-linux-gnueabihf mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o mmdb/.libs/clipper_mmdb.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; }) libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.la libtool: warning: relinking 'minimol/libclipper-minimol.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o minimol/libclipper-minimol.la -rpath /usr/lib/arm-linux-gnueabihf minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lclipper-mmdb -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; }) libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.la libtool: warning: relinking 'phs/libclipper-phs.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o phs/libclipper-phs.la -rpath /usr/lib/arm-linux-gnueabihf phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o phs/.libs/phs_io.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; }) libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.la libtool: warning: relinking 'cif/libclipper-cif.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o cif/libclipper-cif.la -rpath /usr/lib/arm-linux-gnueabihf cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o cif/.libs/cif_data_io.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; }) libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.la libtool: warning: relinking 'ccp4/libclipper-ccp4.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ccp4/libclipper-ccp4.la -rpath /usr/lib/arm-linux-gnueabihf ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lccp4c -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.la libtool: warning: relinking 'cns/libclipper-cns.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o cns/libclipper-cns.la -rpath /usr/lib/arm-linux-gnueabihf cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; }) libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.la libtool: warning: relinking 'fortran/libclipper-fortran.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/clipper-2.1.20201109-2build1 -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fortran/libclipper-fortran.la -rpath /usr/lib/arm-linux-gnueabihf fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o fortran/.libs/f_interface.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lclipper-contrib -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so || { rm -f libclipper-fortran.so && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so; }; }) libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_map_io.h ccp4/ccp4_mtz_io.h ccp4/ccp4_mtz_types.h ccp4/ccp4_utils.h '/<>/debian/tmp/usr/include/clipper/ccp4' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/cif' /usr/bin/install -c -m 644 cif/cif_data_io.h '/<>/debian/tmp/usr/include/clipper/cif' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/cns' /usr/bin/install -c -m 644 cns/cns_hkl_io.h cns/cns_map_io.h '/<>/debian/tmp/usr/include/clipper/cns' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/minimol' /usr/bin/install -c -m 644 minimol/container_minimol.h minimol/minimol_data.h minimol/minimol_seq.h minimol/minimol.h minimol/minimol_io.h minimol/minimol_utils.h '/<>/debian/tmp/usr/include/clipper/minimol' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/mmdb' /usr/bin/install -c -m 644 mmdb/clipper_mmdb.h '/<>/debian/tmp/usr/include/clipper/mmdb' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/phs' /usr/bin/install -c -m 644 phs/phs_io.h '/<>/debian/tmp/usr/include/clipper/phs' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/clipper' /usr/bin/install -c -m 644 clipper-ccp4.h clipper-contrib.h clipper-phs.h clipper-cctbx.h clipper-minimol.h clipper.h clipper-cif.h clipper-mmdb.h minimal-clipper-hkl.h clipper-cns.h minimal-clipper-map.h '/<>/debian/tmp/usr/include/clipper' make[4]: Leaving directory '/<>/clipper' make[3]: Leaving directory '/<>/clipper' make[2]: Leaving directory '/<>/clipper' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 clipper.pc '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev//usr/include cp --reflink=auto -a debian/tmp/usr/include/clipper debian/libclipper-dev//usr/include/ install -m0755 -d debian/libclipper-dev//usr/lib/arm-linux-gnueabihf cp --reflink=auto -a debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.so debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig debian/libclipper-dev//usr/lib/arm-linux-gnueabihf/ install -m0755 -d debian/libclipper2//usr/lib/arm-linux-gnueabihf cp --reflink=auto -a debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 debian/libclipper2//usr/lib/arm-linux-gnueabihf/ dh_installdocs -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/usr/share/doc/libclipper-dev install -p -m0644 debian/copyright debian/libclipper-dev/usr/share/doc/libclipper-dev/copyright install -m0755 -d debian/libclipper2/usr/share/doc/libclipper2 install -p -m0644 debian/copyright debian/libclipper2/usr/share/doc/libclipper2/copyright dh_installchangelogs -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/usr/share/doc/libclipper-dev install -p -m0644 debian/.debhelper/generated/libclipper-dev/dh_installchangelogs.dch.trimmed debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog.Debian install -m0755 -d debian/libclipper2/usr/share/doc/libclipper2 install -p -m0644 debian/.debhelper/generated/libclipper2/dh_installchangelogs.dch.trimmed debian/libclipper2/usr/share/doc/libclipper2/changelog.Debian dh_installexamples -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_installsystemduser -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_lintian -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/usr/share/lintian/overrides install -p -m0644 debian/libclipper2.lintian-overrides debian/libclipper2/usr/share/lintian/overrides/libclipper2 dh_perl -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_link -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-phs.so ln -s libclipper-phs.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-phs.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-core.so ln -s libclipper-core.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-core.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so ln -s libclipper-minimol.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so ln -s libclipper-ccp4.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cif.so ln -s libclipper-cif.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cif.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so ln -s libclipper-mmdb.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cns.so ln -s libclipper-cns.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cns.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so ln -s libclipper-fortran.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so ln -s libclipper-contrib.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 ln -s libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 ln -s libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2 ln -s libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2 ln -s libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 ln -s libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 ln -s libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2 ln -s libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 ln -s libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 ln -s libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 dh_strip_nondeterminism -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_compress -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" cd debian/libclipper-dev cd debian/libclipper2 chmod a-x usr/share/doc/libclipper-dev/changelog.Debian gzip -9nf usr/share/doc/libclipper-dev/changelog.Debian chmod a-x usr/share/doc/libclipper2/changelog.Debian cd '/<>' gzip -9nf usr/share/doc/libclipper2/changelog.Debian cd '/<>' dh_fixperms -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" find debian/libclipper-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libclipper2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_dwz -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/usr/lib/debug/.dwz/arm-linux-gnueabihf dwz -mdebian/libclipper2/usr/lib/debug/.dwz/arm-linux-gnueabihf/libclipper2.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/libclipper2.debug -- debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 objcopy --compress-debug-sections debian/libclipper2/usr/lib/debug/.dwz/arm-linux-gnueabihf/libclipper2.debug chmod 0644 -- debian/libclipper2/usr/lib/debug/.dwz/arm-linux-gnueabihf/libclipper2.debug dh_strip -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -fr debian/.debhelper/libclipper-dev/dbgsym-root debugedit --build-id --build-id-seed=libclipper2/2.1.20201109-2build1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debugedit: debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1: Unknown DWARF DW_FORM_0x1f21 ed70074d9a83042a75f42c5bd66eb3edaf3662fb install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ed objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ed/70074d9a83042a75f42c5bd66eb3edaf3662fb.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ed/70074d9a83042a75f42c5bd66eb3edaf3662fb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/y_VgnGtF0a/stripZRgKiH debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 /tmp/y_VgnGtF0a/stripZRgKiH cat '/tmp/y_VgnGtF0a/stripZRgKiH' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/stripZRgKiH debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ed/70074d9a83042a75f42c5bd66eb3edaf3662fb.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 /tmp/y_VgnGtF0a/objcopyPhnuXp chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 /tmp/y_VgnGtF0a/objcopyPhnuXp cat '/tmp/y_VgnGtF0a/objcopyPhnuXp' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/objcopyPhnuXp debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debugedit --build-id --build-id-seed=libclipper2/2.1.20201109-2build1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debugedit: debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1: Unknown DWARF DW_FORM_0x1f21 0071f8a1e29eb4b24b91ec0a011ecd1ae02cee0c install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/00 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/00/71f8a1e29eb4b24b91ec0a011ecd1ae02cee0c.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/00/71f8a1e29eb4b24b91ec0a011ecd1ae02cee0c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/y_VgnGtF0a/stripmW2O2C debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 /tmp/y_VgnGtF0a/stripmW2O2C cat '/tmp/y_VgnGtF0a/stripmW2O2C' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/stripmW2O2C debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/00/71f8a1e29eb4b24b91ec0a011ecd1ae02cee0c.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 /tmp/y_VgnGtF0a/objcopy9dtie1 chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 /tmp/y_VgnGtF0a/objcopy9dtie1 cat '/tmp/y_VgnGtF0a/objcopy9dtie1' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/objcopy9dtie1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debugedit --build-id --build-id-seed=libclipper2/2.1.20201109-2build1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debugedit: debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1: Unknown DWARF DW_FORM_0x1f21 27ed88895e22d7d1bf8600ac6e533c5be4da25a6 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/27 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/27/ed88895e22d7d1bf8600ac6e533c5be4da25a6.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/27/ed88895e22d7d1bf8600ac6e533c5be4da25a6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/y_VgnGtF0a/strip_l8OS4 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 /tmp/y_VgnGtF0a/strip_l8OS4 cat '/tmp/y_VgnGtF0a/strip_l8OS4' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/strip_l8OS4 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/27/ed88895e22d7d1bf8600ac6e533c5be4da25a6.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 /tmp/y_VgnGtF0a/objcopyIh9LfG chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 /tmp/y_VgnGtF0a/objcopyIh9LfG cat '/tmp/y_VgnGtF0a/objcopyIh9LfG' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/objcopyIh9LfG debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debugedit --build-id --build-id-seed=libclipper2/2.1.20201109-2build1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debugedit: debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1: Unknown DWARF DW_FORM_0x1f21 5f297d24b895d9005a4bb597c879bf7023175cb5 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/5f objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/5f/297d24b895d9005a4bb597c879bf7023175cb5.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/5f/297d24b895d9005a4bb597c879bf7023175cb5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/y_VgnGtF0a/strip6EpE9f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 /tmp/y_VgnGtF0a/strip6EpE9f cat '/tmp/y_VgnGtF0a/strip6EpE9f' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/strip6EpE9f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/5f/297d24b895d9005a4bb597c879bf7023175cb5.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 /tmp/y_VgnGtF0a/objcopyOnVgyB chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 /tmp/y_VgnGtF0a/objcopyOnVgyB cat '/tmp/y_VgnGtF0a/objcopyOnVgyB' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/objcopyOnVgyB debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debugedit --build-id --build-id-seed=libclipper2/2.1.20201109-2build1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debugedit: debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1: Unknown DWARF DW_FORM_0x1f20 f36edac23565c0e18d1b9c92b6cb2ef30345e8db install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f3 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f3/6edac23565c0e18d1b9c92b6cb2ef30345e8db.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f3/6edac23565c0e18d1b9c92b6cb2ef30345e8db.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/y_VgnGtF0a/stripI88VHg debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 /tmp/y_VgnGtF0a/stripI88VHg cat '/tmp/y_VgnGtF0a/stripI88VHg' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/stripI88VHg debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f3/6edac23565c0e18d1b9c92b6cb2ef30345e8db.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 /tmp/y_VgnGtF0a/objcopyz2joNG chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 /tmp/y_VgnGtF0a/objcopyz2joNG cat '/tmp/y_VgnGtF0a/objcopyz2joNG' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/objcopyz2joNG debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debugedit --build-id --build-id-seed=libclipper2/2.1.20201109-2build1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debugedit: debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1: Unknown DWARF DW_FORM_0x1f21 52c2cae3e48a279396a3ed01f3afc5c2edd52f53 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/52 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/52/c2cae3e48a279396a3ed01f3afc5c2edd52f53.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/52/c2cae3e48a279396a3ed01f3afc5c2edd52f53.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/y_VgnGtF0a/stripnZF4NH debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 /tmp/y_VgnGtF0a/stripnZF4NH cat '/tmp/y_VgnGtF0a/stripnZF4NH' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/stripnZF4NH debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/52/c2cae3e48a279396a3ed01f3afc5c2edd52f53.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 /tmp/y_VgnGtF0a/objcopyOSXUO2 chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 /tmp/y_VgnGtF0a/objcopyOSXUO2 cat '/tmp/y_VgnGtF0a/objcopyOSXUO2' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/objcopyOSXUO2 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debugedit --build-id --build-id-seed=libclipper2/2.1.20201109-2build1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 debugedit: debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1: Unknown DWARF DW_FORM_0x1f21 d06e075e2ee576f145a163810fd568a6ebe32fb9 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d0 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d0/6e075e2ee576f145a163810fd568a6ebe32fb9.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d0/6e075e2ee576f145a163810fd568a6ebe32fb9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/y_VgnGtF0a/stripYxWjWd debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 /tmp/y_VgnGtF0a/stripYxWjWd cat '/tmp/y_VgnGtF0a/stripYxWjWd' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/stripYxWjWd debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d0/6e075e2ee576f145a163810fd568a6ebe32fb9.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 /tmp/y_VgnGtF0a/objcopyW_Q4On chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 /tmp/y_VgnGtF0a/objcopyW_Q4On cat '/tmp/y_VgnGtF0a/objcopyW_Q4On' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/objcopyW_Q4On debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 debugedit --build-id --build-id-seed=libclipper2/2.1.20201109-2build1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debugedit: debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1: Unknown DWARF DW_FORM_0x1f21 43239b3947c1468deaf16854420ee89fad0ed91a install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/43 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/43/239b3947c1468deaf16854420ee89fad0ed91a.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/43/239b3947c1468deaf16854420ee89fad0ed91a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/y_VgnGtF0a/stripOaay15 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 /tmp/y_VgnGtF0a/stripOaay15 cat '/tmp/y_VgnGtF0a/stripOaay15' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/stripOaay15 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/43/239b3947c1468deaf16854420ee89fad0ed91a.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 /tmp/y_VgnGtF0a/objcopyP_iBWX chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 /tmp/y_VgnGtF0a/objcopyP_iBWX cat '/tmp/y_VgnGtF0a/objcopyP_iBWX' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/objcopyP_iBWX debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debugedit --build-id --build-id-seed=libclipper2/2.1.20201109-2build1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 debugedit: debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1: Unknown DWARF DW_FORM_0x1f21 0f076848bd26f3792c900d4ab5ffc663d5ba62dc install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/0f objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/0f/076848bd26f3792c900d4ab5ffc663d5ba62dc.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/0f/076848bd26f3792c900d4ab5ffc663d5ba62dc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/y_VgnGtF0a/stripIa6VDt debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 /tmp/y_VgnGtF0a/stripIa6VDt cat '/tmp/y_VgnGtF0a/stripIa6VDt' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/stripIa6VDt debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/0f/076848bd26f3792c900d4ab5ffc663d5ba62dc.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 /tmp/y_VgnGtF0a/objcopyf5esEw chmod --reference debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 /tmp/y_VgnGtF0a/objcopyf5esEw cat '/tmp/y_VgnGtF0a/objcopyf5esEw' > 'debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1' chmod --reference /tmp/y_VgnGtF0a/objcopyf5esEw debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libclipper2/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libclipper2/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libclipper2/usr/lib/debug rm -fr debian/.debhelper/libclipper2/dbgsym-root dh_makeshlibs -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f debian/libclipper-dev/DEBIAN/shlibs rm -f debian/libclipper2/DEBIAN/shlibs install -m0755 -d debian/libclipper2/DEBIAN echo "libclipper-ccp4 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-cif 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-cns 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-contrib 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-core 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-fortran 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-minimol 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-mmdb 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-phs 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs chmod 0644 -- debian/libclipper2/DEBIAN/shlibs mv debian/.debhelper/generated/libclipper2/triggers.new debian/.debhelper/generated/libclipper2/triggers dh_shlibdeps -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/DEBIAN dpkg-shlibdeps -Tdebian/libclipper2.substvars debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 found in none of the libraries dh_installdeb -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/DEBIAN install -m0755 -d debian/libclipper2/DEBIAN install -p -m0644 debian/.debhelper/generated/libclipper2/triggers debian/libclipper2/DEBIAN/triggers dh_gencontrol -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/DEBIAN echo misc:Depends= >> debian/libclipper-dev.substvars echo misc:Pre-Depends= >> debian/libclipper-dev.substvars dpkg-gencontrol -plibclipper-dev -ldebian/changelog -Tdebian/libclipper-dev.substvars -Pdebian/libclipper-dev install -m0755 -d debian/libclipper2/DEBIAN echo misc:Depends= >> debian/libclipper2.substvars echo misc:Pre-Depends= >> debian/libclipper2.substvars dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -Pdebian/libclipper2 chmod 0644 -- debian/libclipper-dev/DEBIAN/control chmod 0644 -- debian/libclipper2/DEBIAN/control dh_md5sums -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/DEBIAN install -m0755 -d debian/libclipper2/DEBIAN cd debian/libclipper-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libclipper2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libclipper-dev/DEBIAN/md5sums chmod 0644 -- debian/libclipper2/DEBIAN/md5sums dh_builddeb -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dpkg-deb --root-owner-group --build debian/libclipper-dev .. dpkg-deb --root-owner-group --build debian/libclipper2 .. INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libclipper2 (in debian/libclipper2); do_strip: , oemstrip: pkgstriptranslations: processing libclipper-dev (in debian/libclipper-dev); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libclipper2/DEBIAN/control, package libclipper2, directory debian/libclipper2 INFO: pkgstripfiles: waiting for lock (libclipper2) ... pkgstripfiles: processing control file: debian/libclipper-dev/DEBIAN/control, package libclipper-dev, directory debian/libclipper-dev Searching for duplicated docs in dependency libclipper2... symlinking changelog.Debian.gz in libclipper-dev to file in libclipper2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper-dev' in '../libclipper-dev_2.1.20201109-2build1_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper2' in '../libclipper2_2.1.20201109-2build1_armhf.deb'. dpkg-genbuildinfo --build=any -O../clipper_2.1.20201109-2build1_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../clipper_2.1.20201109-2build1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-05-11T19:33:19Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clipper_2.1.20201109-2build1_armhf.changes: ------------------------------------------- Format: 1.8 Date: Mon, 22 Apr 2024 11:40:46 +0200 Source: clipper Binary: libclipper-dev libclipper2 Built-For-Profiles: noudeb Architecture: armhf Version: 2.1.20201109-2build1 Distribution: noble Urgency: high Maintainer: Launchpad Build Daemon Changed-By: Julian Andres Klode Description: libclipper-dev - object oriented development kit for crystallographic computing libclipper2 - object oriented library for crystallographic computing Changes: clipper (2.1.20201109-2build1) noble; urgency=high . * No change rebuild against frame pointers and time_t. Checksums-Sha1: 6b5efc14aaf4b8f42cd7f6b208039bf76ed28622 7375 clipper_2.1.20201109-2build1_armhf.buildinfo ab289ffffbcdd0d3f02cd5e94fc5ee351f9cf6e5 76998 libclipper-dev_2.1.20201109-2build1_armhf.deb 4be3399ad1296d665b6250c7674893e3cba6107e 1178400 libclipper2_2.1.20201109-2build1_armhf.deb Checksums-Sha256: 7a3cefb94d8696435b7896a265ddf8567c98cc3582ee49f3e8736c2e483bbf0c 7375 clipper_2.1.20201109-2build1_armhf.buildinfo 7b6fce0840db3a51393c4c5c4c3c798ed749613ef1debf00f4d1b2c620f473d3 76998 libclipper-dev_2.1.20201109-2build1_armhf.deb 9dde4c96299422d9784fbf919712957fdae441e7fe69b6a6b132b550ff5ab65a 1178400 libclipper2_2.1.20201109-2build1_armhf.deb Files: f3a43804ab46d1e511a29ff65945b059 7375 science optional clipper_2.1.20201109-2build1_armhf.buildinfo 5f4292fe11ad65e35047a2dcee0a923c 76998 libdevel optional libclipper-dev_2.1.20201109-2build1_armhf.deb 31412ea068ca9037894133ccd34a5c3e 1178400 libs optional libclipper2_2.1.20201109-2build1_armhf.deb Original-Maintainer: Debian Science Maintainers /<>/clipper_2.1.20201109-2build1_armhf.changes.new could not be renamed to /<>/clipper_2.1.20201109-2build1_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: clipper Binary: libclipper-dev libclipper2 Architecture: armhf Version: 2.1.20201109-2build1 Checksums-Md5: 5f4292fe11ad65e35047a2dcee0a923c 76998 libclipper-dev_2.1.20201109-2build1_armhf.deb 31412ea068ca9037894133ccd34a5c3e 1178400 libclipper2_2.1.20201109-2build1_armhf.deb Checksums-Sha1: ab289ffffbcdd0d3f02cd5e94fc5ee351f9cf6e5 76998 libclipper-dev_2.1.20201109-2build1_armhf.deb 4be3399ad1296d665b6250c7674893e3cba6107e 1178400 libclipper2_2.1.20201109-2build1_armhf.deb Checksums-Sha256: 7b6fce0840db3a51393c4c5c4c3c798ed749613ef1debf00f4d1b2c620f473d3 76998 libclipper-dev_2.1.20201109-2build1_armhf.deb 9dde4c96299422d9784fbf919712957fdae441e7fe69b6a6b132b550ff5ab65a 1178400 libclipper2_2.1.20201109-2build1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Sat, 11 May 2024 19:33:18 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.137ubuntu1), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu2), autotools-dev (= 20220109.1), base-files (= 13ubuntu10), base-passwd (= 3.6.3build1), bash (= 5.2.21-2ubuntu4), binutils (= 2.42-4ubuntu2), binutils-arm-linux-gnueabihf (= 2.42-4ubuntu2), binutils-common (= 2.42-4ubuntu2), bsdextrautils (= 2.39.3-9ubuntu6), bsdutils (= 1:2.39.3-9ubuntu6), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3ubuntu6), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-23ubuntu4), cpp-13-arm-linux-gnueabihf (= 13.2.0-23ubuntu4), cpp-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu5), debconf (= 1.5.86ubuntu1), debhelper (= 13.14.1ubuntu5), debianutils (= 5.17build1), debugedit (= 1:5.0-5build2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1build1), dpkg (= 1.22.6ubuntu6), dpkg-dev (= 1.22.6ubuntu6), dwz (= 0.15-1build6), fftw-dev (= 2.1.5-6build2), fftw2 (= 2.1.5-6build2), file (= 1:5.45-3build1), findutils (= 4.9.0-5build1), g++ (= 4:13.2.0-7ubuntu1), g++-13 (= 13.2.0-23ubuntu4), g++-13-arm-linux-gnueabihf (= 13.2.0-23ubuntu4), g++-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), gcc (= 4:13.2.0-7ubuntu1), gcc-13 (= 13.2.0-23ubuntu4), gcc-13-arm-linux-gnueabihf (= 13.2.0-23ubuntu4), gcc-13-base (= 13.2.0-23ubuntu4), gcc-14-base (= 14-20240412-0ubuntu1), gcc-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), gettext (= 0.21-14ubuntu2), gettext-base (= 0.21-14ubuntu2), gfortran (= 4:13.2.0-7ubuntu1), gfortran-13 (= 13.2.0-23ubuntu4), gfortran-13-arm-linux-gnueabihf (= 13.2.0-23ubuntu4), gfortran-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), grep (= 3.11-4build1), groff-base (= 1.23.0-3build2), gzip (= 1.12-1ubuntu3), hostname (= 3.23+nmu2ubuntu2), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1build1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240412-0ubuntu1), libatomic1 (= 14-20240412-0ubuntu1), libattr1 (= 1:2.5.2-1build1), libaudit-common (= 1:3.1.2-2.1build1), libaudit1 (= 1:3.1.2-2.1build1), libbinutils (= 2.42-4ubuntu2), libblkid1 (= 2.39.3-9ubuntu6), libbsd0 (= 0.12.1-1build1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-0ubuntu8), libc-dev-bin (= 2.39-0ubuntu8), libc6 (= 2.39-0ubuntu8), libc6-dev (= 2.39-0ubuntu8), libcap-ng0 (= 0.8.4-2build2), libcap2 (= 1:2.66-5ubuntu2), libcc1-0 (= 14-20240412-0ubuntu1), libccp4-data (= 8.0.0-2ubuntu1), libccp4-dev (= 8.0.0-2ubuntu1), libccp4c0t64 (= 8.0.0-2ubuntu1), libccp4f0 (= 8.0.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-4build1), libcrypt1 (= 1:4.4.36-4build1), libctf-nobfd0 (= 2.42-4ubuntu2), libctf0 (= 2.42-4ubuntu2), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.271ubuntu3), libdebhelper-perl (= 13.14.1ubuntu5), libdpkg-perl (= 1.22.6ubuntu6), libdw1t64 (= 0.190-1.1build4), libelf1t64 (= 0.190-1.1build4), libevent-core-2.1-7t64 (= 2.1.12-stable-9ubuntu2), libevent-pthreads-2.1-7t64 (= 2.1.12-stable-9ubuntu2), libfabric1 (= 1.17.0-3build2), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-23ubuntu4), libgcc-s1 (= 14-20240412-0ubuntu1), libgcrypt20 (= 1.10.3-2build1), libgdbm-compat4t64 (= 1.23-5.1build1), libgdbm6t64 (= 1.23-5.1build1), libgfortran-13-dev (= 13.2.0-23ubuntu4), libgfortran5 (= 14-20240412-0ubuntu1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu6), libgomp1 (= 14-20240412-0ubuntu1), libgpg-error0 (= 1.47-3build2), libhwloc-plugins (= 2.10.0-1build1), libhwloc15 (= 2.10.0-1build1), libibverbs1 (= 50.0-2build2), libicu74 (= 74.2-1ubuntu3), libisl23 (= 0.26-3build1), libjansson4 (= 2.14-2build2), liblz4-1 (= 1.9.4-1build1), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3build1), libmagic1t64 (= 1:5.45-3build1), libmd0 (= 1.1.0-2build1), libmmdb2-0 (= 2.0.22-1), libmmdb2-dev (= 2.0.22-1), libmount1 (= 2.39.3-9ubuntu6), libmpc3 (= 1.3.1-1build1), libmpfr6 (= 4.2.1-1build1), libmunge2 (= 0.5.15-4build1), libnl-3-200 (= 3.7.0-0.3build1), libnl-route-3-200 (= 3.7.0-0.3build1), libopenmpi3t64 (= 4.1.6-7ubuntu2), libpam-modules (= 1.5.3-5ubuntu5), libpam-modules-bin (= 1.5.3-5ubuntu5), libpam-runtime (= 1.5.3-5ubuntu5), libpam0g (= 1.5.3-5ubuntu5), libpciaccess0 (= 0.17-3build1), libpcre2-8-0 (= 10.42-4ubuntu2), libperl5.38t64 (= 5.38.2-3.2build2), libpipeline1 (= 1.5.7-2), libpmix2t64 (= 5.0.1-4.1build1), librdmacm1t64 (= 50.0-2build2), libseccomp2 (= 2.5.5-1ubuntu3), libselinux1 (= 3.5-2ubuntu2), libsemanage-common (= 3.5-1build5), libsemanage2 (= 3.5-1build5), libsepol2 (= 3.5-2build1), libsframe1 (= 2.42-4ubuntu2), libsmartcols1 (= 2.39.3-9ubuntu6), libssl3t64 (= 3.0.13-0ubuntu3), libstdc++-13-dev (= 13.2.0-23ubuntu4), libstdc++6 (= 14-20240412-0ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1ubuntu8), libtinfo6 (= 6.4+20240113-1ubuntu2), libtool (= 2.4.7-7build1), libubsan1 (= 14-20240412-0ubuntu1), libuchardet0 (= 0.0.8-1build1), libudev1 (= 255.4-1ubuntu8), libunistring5 (= 1.1-2build1), libuuid1 (= 2.39.3-9ubuntu6), libx11-6 (= 2:1.8.7-1build1), libx11-data (= 2:1.8.7-1build1), libxau6 (= 1:1.0.9-1build6), libxcb1 (= 1.15-1ubuntu2), libxdmcp6 (= 1:1.1.3-0ubuntu6), libxext6 (= 2:1.3.4-1build2), libxml2 (= 2.9.14+dfsg-1.3ubuntu3), libxnvctrl0 (= 510.47.03-0ubuntu4), libzstd1 (= 1.5.5+dfsg2-2build1), linux-libc-dev (= 6.8.0-31.31), login (= 1:4.13+dfsg1-4ubuntu3), lto-disabled-list (= 47), m4 (= 1.4.19-4build1), make (= 4.3-4.1build2), man-db (= 2.12.0-4build2), mawk (= 1.3.4.20240123-1build1), ncurses-base (= 6.4+20240113-1ubuntu2), ncurses-bin (= 6.4+20240113-1ubuntu2), ocl-icd-libopencl1 (= 2.3.2-1build1), passwd (= 1:4.13+dfsg1-4ubuntu3), patch (= 2.7.6-7build3), perl (= 5.38.2-3.2build2), perl-base (= 5.38.2-3.2build2), perl-modules-5.38 (= 5.38.2-3.2build2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu7), sed (= 4.9-2build1), sensible-utils (= 0.0.22), sfftw-dev (= 2.1.5-6build2), sfftw2 (= 2.1.5-6build2), sysvinit-utils (= 3.08-6ubuntu3), tar (= 1.35+dfsg-3build1), util-linux (= 2.39.3-9ubuntu6), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1ubuntu2) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1713778846" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libclipper-dev_2.1.20201109-2build1_armhf.deb --------------------------------------------- new Debian package, version 2.0. size 76998 bytes: control archive=2809 bytes. 880 bytes, 20 lines control 5920 bytes, 81 lines md5sums Package: libclipper-dev Source: clipper Version: 2.1.20201109-2build1 Architecture: armhf Maintainer: Ubuntu Developers Installed-Size: 655 Depends: fftw-dev, libccp4-dev, libclipper2 (= 2.1.20201109-2build1), libmmdb2-dev, sfftw-dev Suggests: libclipper-doc Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Description: object oriented development kit for crystallographic computing The aim of the clipper project is to produce a set of object-oriented libraries for the organisation of crystallographic data and the performance of crystallographic computation. . This package contains development environment for programs which will use the clipper libraries. Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2024-04-22 09:40 ./ drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/ drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/include/ drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/include/clipper/ drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/include/clipper/ccp4/ -rw-r--r-- root/root 4349 2024-04-22 09:40 ./usr/include/clipper/ccp4/ccp4_map_io.h -rw-r--r-- root/root 10870 2024-04-22 09:40 ./usr/include/clipper/ccp4/ccp4_mtz_io.h -rw-r--r-- root/root 4187 2024-04-22 09:40 ./usr/include/clipper/ccp4/ccp4_mtz_types.h -rw-r--r-- root/root 3056 2024-04-22 09:40 ./usr/include/clipper/ccp4/ccp4_utils.h drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/include/clipper/cif/ -rw-r--r-- root/root 5200 2024-04-22 09:40 ./usr/include/clipper/cif/cif_data_io.h -rw-r--r-- root/root 228 2024-04-22 09:40 ./usr/include/clipper/clipper-ccp4.h -rw-r--r-- root/root 158 2024-04-22 09:40 ./usr/include/clipper/clipper-cctbx.h -rw-r--r-- root/root 150 2024-04-22 09:40 ./usr/include/clipper/clipper-cif.h -rw-r--r-- root/root 185 2024-04-22 09:40 ./usr/include/clipper/clipper-cns.h -rw-r--r-- root/root 510 2024-04-22 09:40 ./usr/include/clipper/clipper-contrib.h -rw-r--r-- root/root 251 2024-04-22 09:40 ./usr/include/clipper/clipper-minimol.h -rw-r--r-- root/root 154 2024-04-22 09:40 ./usr/include/clipper/clipper-mmdb.h -rw-r--r-- root/root 145 2024-04-22 09:40 ./usr/include/clipper/clipper-phs.h -rw-r--r-- root/root 542 2024-04-22 09:40 ./usr/include/clipper/clipper.h drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/include/clipper/cns/ -rw-r--r-- root/root 5204 2024-04-22 09:40 ./usr/include/clipper/cns/cns_hkl_io.h -rw-r--r-- root/root 4411 2024-04-22 09:40 ./usr/include/clipper/cns/cns_map_io.h drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/include/clipper/contrib/ -rw-r--r-- root/root 4355 2024-04-22 09:40 ./usr/include/clipper/contrib/convolution_search.h -rw-r--r-- root/root 3709 2024-04-22 09:40 ./usr/include/clipper/contrib/edcalc.h -rw-r--r-- root/root 6632 2024-04-22 09:40 ./usr/include/clipper/contrib/fffear.h -rw-r--r-- root/root 12132 2024-04-22 09:40 ./usr/include/clipper/contrib/function_object_bases.h -rw-r--r-- root/root 6813 2024-04-22 09:40 ./usr/include/clipper/contrib/mapfilter.h -rw-r--r-- root/root 3261 2024-04-22 09:40 ./usr/include/clipper/contrib/originmatch.h -rw-r--r-- root/root 5217 2024-04-22 09:40 ./usr/include/clipper/contrib/sfcalc.h -rw-r--r-- root/root 3430 2024-04-22 09:40 ./usr/include/clipper/contrib/sfcalc_obs.h -rw-r--r-- root/root 4381 2024-04-22 09:40 ./usr/include/clipper/contrib/sfscale.h -rw-r--r-- root/root 6816 2024-04-22 09:40 ./usr/include/clipper/contrib/sfweight.h -rw-r--r-- root/root 4986 2024-04-22 09:40 ./usr/include/clipper/contrib/skeleton.h -rw-r--r-- root/root 2526 2024-04-22 09:40 ./usr/include/clipper/contrib/test_contrib.h drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/include/clipper/core/ -rw-r--r-- root/root 7411 2024-04-22 09:40 ./usr/include/clipper/core/atomsf.h -rw-r--r-- root/root 7219 2024-04-22 09:40 ./usr/include/clipper/core/cell.h -rw-r--r-- root/root 3257 2024-04-22 09:40 ./usr/include/clipper/core/clipper_instance.h -rw-r--r-- root/root 8170 2024-04-22 09:40 ./usr/include/clipper/core/clipper_memory.h -rw-r--r-- root/root 6252 2024-04-22 09:40 ./usr/include/clipper/core/clipper_message.h -rw-r--r-- root/root 2712 2024-04-22 09:40 ./usr/include/clipper/core/clipper_precision.h -rw-r--r-- root/root 8636 2024-04-22 09:40 ./usr/include/clipper/core/clipper_stats.h -rw-r--r-- root/root 6029 2024-04-22 09:40 ./usr/include/clipper/core/clipper_sysdep.h -rw-r--r-- root/root 2937 2024-04-22 09:40 ./usr/include/clipper/core/clipper_test.h -rw-r--r-- root/root 4993 2024-04-22 09:40 ./usr/include/clipper/core/clipper_thread.h -rw-r--r-- root/root 28429 2024-04-22 09:40 ./usr/include/clipper/core/clipper_types.h -rw-r--r-- root/root 9387 2024-04-22 09:40 ./usr/include/clipper/core/clipper_util.h -rw-r--r-- root/root 5640 2024-04-22 09:40 ./usr/include/clipper/core/container.h -rw-r--r-- root/root 6761 2024-04-22 09:40 ./usr/include/clipper/core/container_hkl.h -rw-r--r-- root/root 8922 2024-04-22 09:40 ./usr/include/clipper/core/container_map.h -rw-r--r-- root/root 5747 2024-04-22 09:40 ./usr/include/clipper/core/container_types.h -rw-r--r-- root/root 39266 2024-04-22 09:40 ./usr/include/clipper/core/coords.h -rw-r--r-- root/root 9812 2024-04-22 09:40 ./usr/include/clipper/core/derivs.h -rw-r--r-- root/root 10977 2024-04-22 09:40 ./usr/include/clipper/core/fftmap.h -rw-r--r-- root/root 6392 2024-04-22 09:40 ./usr/include/clipper/core/fftmap_sparse.h -rw-r--r-- root/root 11925 2024-04-22 09:40 ./usr/include/clipper/core/hkl_compute.h -rw-r--r-- root/root 22848 2024-04-22 09:40 ./usr/include/clipper/core/hkl_data.h -rw-r--r-- root/root 24887 2024-04-22 09:40 ./usr/include/clipper/core/hkl_datatypes.h -rw-r--r-- root/root 11570 2024-04-22 09:40 ./usr/include/clipper/core/hkl_info.h -rw-r--r-- root/root 3214 2024-04-22 09:40 ./usr/include/clipper/core/hkl_lookup.h -rw-r--r-- root/root 6048 2024-04-22 09:40 ./usr/include/clipper/core/hkl_operators.h -rw-r--r-- root/root 17423 2024-04-22 09:40 ./usr/include/clipper/core/map_interp.h -rw-r--r-- root/root 5297 2024-04-22 09:40 ./usr/include/clipper/core/map_utils.h -rw-r--r-- root/root 19689 2024-04-22 09:40 ./usr/include/clipper/core/nxmap.h -rw-r--r-- root/root 9411 2024-04-22 09:40 ./usr/include/clipper/core/nxmap_operator.h -rw-r--r-- root/root 5108 2024-04-22 09:40 ./usr/include/clipper/core/ramachandran.h -rw-r--r-- root/root 14748 2024-04-22 09:40 ./usr/include/clipper/core/resol_basisfn.h -rw-r--r-- root/root 10863 2024-04-22 09:40 ./usr/include/clipper/core/resol_fn.h -rw-r--r-- root/root 20587 2024-04-22 09:40 ./usr/include/clipper/core/resol_targetfn.h -rw-r--r-- root/root 8437 2024-04-22 09:40 ./usr/include/clipper/core/rotation.h -rw-r--r-- root/root 10516 2024-04-22 09:40 ./usr/include/clipper/core/spacegroup.h -rw-r--r-- root/root 2979 2024-04-22 09:40 ./usr/include/clipper/core/spacegroup_data.h -rw-r--r-- root/root 5869 2024-04-22 09:40 ./usr/include/clipper/core/symop.h -rw-r--r-- root/root 2503 2024-04-22 09:40 ./usr/include/clipper/core/test_core.h -rw-r--r-- root/root 3086 2024-04-22 09:40 ./usr/include/clipper/core/test_data.h -rw-r--r-- root/root 31817 2024-04-22 09:40 ./usr/include/clipper/core/xmap.h -rw-r--r-- root/root 311 2024-04-22 09:40 ./usr/include/clipper/minimal-clipper-hkl.h -rw-r--r-- root/root 265 2024-04-22 09:40 ./usr/include/clipper/minimal-clipper-map.h drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/include/clipper/minimol/ -rw-r--r-- root/root 2903 2024-04-22 09:40 ./usr/include/clipper/minimol/container_minimol.h -rw-r--r-- root/root 15387 2024-04-22 09:40 ./usr/include/clipper/minimol/minimol.h -rw-r--r-- root/root 2816 2024-04-22 09:40 ./usr/include/clipper/minimol/minimol_data.h -rw-r--r-- root/root 3534 2024-04-22 09:40 ./usr/include/clipper/minimol/minimol_io.h -rw-r--r-- root/root 4833 2024-04-22 09:40 ./usr/include/clipper/minimol/minimol_seq.h -rw-r--r-- root/root 4760 2024-04-22 09:40 ./usr/include/clipper/minimol/minimol_utils.h drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/include/clipper/mmdb/ -rw-r--r-- root/root 10259 2024-04-22 09:40 ./usr/include/clipper/mmdb/clipper_mmdb.h drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/include/clipper/phs/ -rw-r--r-- root/root 4073 2024-04-22 09:40 ./usr/include/clipper/phs/phs_io.h drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so -> libclipper-ccp4.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-cif.so -> libclipper-cif.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-cns.so -> libclipper-cns.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-contrib.so -> libclipper-contrib.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-core.so -> libclipper-core.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-fortran.so -> libclipper-fortran.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-minimol.so -> libclipper-minimol.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so -> libclipper-mmdb.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-phs.so -> libclipper-phs.so.2.0.1 drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/pkgconfig/ -rw-r--r-- root/root 464 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/pkgconfig/clipper.pc drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/share/ drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/share/doc/libclipper-dev/ lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/share/doc/libclipper-dev/changelog.Debian.gz -> ../libclipper2/changelog.Debian.gz -rw-r--r-- root/root 2528 2023-06-19 14:59 ./usr/share/doc/libclipper-dev/copyright libclipper2_2.1.20201109-2build1_armhf.deb ------------------------------------------ new Debian package, version 2.0. size 1178400 bytes: control archive=1181 bytes. 901 bytes, 19 lines control 1013 bytes, 12 lines md5sums 438 bytes, 9 lines shlibs 75 bytes, 2 lines triggers Package: libclipper2 Source: clipper Version: 2.1.20201109-2build1 Architecture: armhf Maintainer: Ubuntu Developers Installed-Size: 2443 Depends: libc6 (>= 2.38), libccp4c0t64 (>= 8.0.0), libgcc-s1 (>= 4.0), libmmdb2-0 (>= 2.0.22), libstdc++6 (>= 13.1), sfftw2 (>= 2.1.5) Section: libs Priority: optional Multi-Arch: same Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Description: object oriented library for crystallographic computing The aim of the clipper project is to produce a set of object-oriented libraries for the organisation of crystallographic data and the performance of crystallographic computation. . This package contains shared libraries needed to run programs that have been developed using the clipper libraries. Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2024-04-22 09:40 ./ drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/ drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2 -> libclipper-ccp4.so.2.0.1 -rw-r--r-- root/root 177704 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 -> libclipper-cif.so.2.0.1 -rw-r--r-- root/root 34344 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 -> libclipper-cns.so.2.0.1 -rw-r--r-- root/root 100804 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 -> libclipper-contrib.so.2.0.1 -rw-r--r-- root/root 389268 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 -> libclipper-core.so.2.0.1 -rw-r--r-- root/root 1514372 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 -> libclipper-fortran.so.2.0.1 -rw-r--r-- root/root 17960 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 -> libclipper-minimol.so.2.0.1 -rw-r--r-- root/root 195888 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2 -> libclipper-mmdb.so.2.0.1 -rw-r--r-- root/root 22056 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 lrwxrwxrwx root/root 0 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2 -> libclipper-phs.so.2.0.1 -rw-r--r-- root/root 17960 2024-04-22 09:40 ./usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/share/ drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/share/doc/libclipper2/ -rw-r--r-- root/root 743 2024-04-22 09:40 ./usr/share/doc/libclipper2/changelog.Debian.gz -rw-r--r-- root/root 2528 2023-06-19 14:59 ./usr/share/doc/libclipper2/copyright drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-04-22 09:40 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 47 2023-06-19 14:53 ./usr/share/lintian/overrides/libclipper2 +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 168512 Build-Time: 194 Distribution: noble Host Architecture: armhf Install-Time: 18 Job: clipper_2.1.20201109-2build1.dsc Machine Architecture: arm64 Package: clipper Package-Time: 215 Source-Version: 2.1.20201109-2build1 Space: 168512 Status: successful Version: 2.1.20201109-2build1 -------------------------------------------------------------------------------- Finished at 2024-05-11T19:33:19Z Build needed 00:03:35, 168512k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28165509 Scanning for processes to kill in build PACKAGEBUILD-28165509