abacas 1.3.1-1 source package in Ubuntu


abacas (1.3.1-1) unstable; urgency=low

  * Initial release (Closes: #619100)
 -- Ubuntu Archive Auto-Sync <email address hidden>   Wed,  04 May 2011 09:04:47 +0000

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Uploaded by:
Ubuntu Archive Auto-Sync on 2011-05-04
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Debian Med
Low Urgency

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Series Pocket Published Component Section
Precise release on 2011-10-13 universe science


Oneiric: [FULLYBUILT] i386


File Size SHA-256 Checksum
abacas_1.3.1.orig.tar.gz 21.8 KiB 0404461e441506437cd2da01a9eacc147705091c0719da47cc298eb13e362509
abacas_1.3.1-1.debian.tar.gz 4.0 KiB cbf21dee113e6b3242049e8f9e2ab7dd4359673c23b535d86f39bed8e14090a4
abacas_1.3.1-1.dsc 1.2 KiB 265bf0fae5998a794a83e3205b9c54b885a9565d165831018efd5e3307492990

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Binary packages built by this source

abacas: Algorithm Based Automatic Contiguation of Assembled Sequences

 ABACAS is intended to rapidly contiguate (align, order, orientate),
 visualize and design primers to close gaps on shotgun assembled contigs
 based on a reference sequence.
 ABACAS uses MUMmer to find alignment positions and identify syntenies
 of assembled contigs against the reference. The output is then processed
 to generate a pseudomolecule taking overlapping contigs and gaps in to
 account. ABACAS generates a comparision file that can be used to
 visualize ordered and oriented contigs in ACT. Synteny is represented by
 red bars where colour intensity decreases with lower values of percent
 identity between comparable blocks. Information on contigs such as the
 orientation, percent identity, coverage and overlap with other contigs
 can also be visualized by loading the outputted feature file on ACT.