abacas 1.3.1-1 source package in Ubuntu


abacas (1.3.1-1) unstable; urgency=low

  * Initial release (Closes: #619100)
 -- Ubuntu Archive Auto-Sync <email address hidden>   Wed,  04 May 2011 09:04:47 +0000

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Uploaded by:
Ubuntu Archive Auto-Sync on 2011-05-04
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Debian Med
Low Urgency

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Series Pocket Published Component Section
Precise release on 2011-10-13 universe science


Oneiric: [FULLYBUILT] i386


File Size MD5 Checksum
abacas_1.3.1.orig.tar.gz 21.8 KiB 169a6e73cd13b4294541f32fa3afe9d4
abacas_1.3.1-1.debian.tar.gz 4.0 KiB 7dfa778d9a99f8cf655c65b570b309e5
abacas_1.3.1-1.dsc 1.2 KiB 9958ce507b4180d10113a8040541ce08

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Binary packages built by this source

abacas: Algorithm Based Automatic Contiguation of Assembled Sequences

 ABACAS is intended to rapidly contiguate (align, order, orientate),
 visualize and design primers to close gaps on shotgun assembled contigs
 based on a reference sequence.
 ABACAS uses MUMmer to find alignment positions and identify syntenies
 of assembled contigs against the reference. The output is then processed
 to generate a pseudomolecule taking overlapping contigs and gaps in to
 account. ABACAS generates a comparision file that can be used to
 visualize ordered and oriented contigs in ACT. Synteny is represented by
 red bars where colour intensity decreases with lower values of percent
 identity between comparable blocks. Information on contigs such as the
 orientation, percent identity, coverage and overlap with other contigs
 can also be visualized by loading the outputted feature file on ACT.