abacas 1.3.1-4 source package in Ubuntu


abacas (1.3.1-4) unstable; urgency=medium

  [ Steffen Moeller ]
  * Introduced EDAM annotation

  [ Andreas Tille ]
  * Move packaging from SVN to Git
  * Standards-Version: 4.1.0 (no changes needed)
  * debhelper 10

 -- Andreas Tille <email address hidden>  Thu, 21 Sep 2017 22:55:11 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic release universe science


Bionic: [FULLYBUILT] amd64


File Size SHA-256 Checksum
abacas_1.3.1-4.dsc 1.9 KiB e0ee515d37bfb103138d0f8d5445905613ae0fa653d528fa7e45f2e2b8396cb0
abacas_1.3.1.orig.tar.gz 21.8 KiB 0404461e441506437cd2da01a9eacc147705091c0719da47cc298eb13e362509
abacas_1.3.1-4.debian.tar.xz 4.1 KiB 17dbcb66d9e7eb73a1d01106c048d54b3c648f164d0dd1d1fa5ba7b7d7364c8e

Available diffs

No changes file available.

Binary packages built by this source

abacas: Algorithm Based Automatic Contiguation of Assembled Sequences

 ABACAS is intended to rapidly contiguate (align, order, orientate),
 visualize and design primers to close gaps on shotgun assembled contigs
 based on a reference sequence.
 ABACAS uses MUMmer to find alignment positions and identify syntenies
 of assembled contigs against the reference. The output is then processed
 to generate a pseudomolecule taking overlapping contigs and gaps in to
 account. ABACAS generates a comparison file that can be used to
 visualize ordered and oriented contigs in ACT. Synteny is represented by
 red bars where colour intensity decreases with lower values of percent
 identity between comparable blocks. Information on contigs such as the
 orientation, percent identity, coverage and overlap with other contigs
 can also be visualized by loading the outputted feature file on ACT.