abacas 1.3.1-4 source package in Ubuntu
Changelog
abacas (1.3.1-4) unstable; urgency=medium [ Steffen Moeller ] * Introduced EDAM annotation [ Andreas Tille ] * Move packaging from SVN to Git * Standards-Version: 4.1.0 (no changes needed) * debhelper 10 -- Andreas Tille <email address hidden> Thu, 21 Sep 2017 22:55:11 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Bionic | release | universe | science |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
abacas_1.3.1-4.dsc | 1.9 KiB | e0ee515d37bfb103138d0f8d5445905613ae0fa653d528fa7e45f2e2b8396cb0 |
abacas_1.3.1.orig.tar.gz | 21.8 KiB | 0404461e441506437cd2da01a9eacc147705091c0719da47cc298eb13e362509 |
abacas_1.3.1-4.debian.tar.xz | 4.1 KiB | 17dbcb66d9e7eb73a1d01106c048d54b3c648f164d0dd1d1fa5ba7b7d7364c8e |
Available diffs
- diff from 1.3.1-3 to 1.3.1-4 (1.2 KiB)
No changes file available.
Binary packages built by this source
- abacas: Algorithm Based Automatic Contiguation of Assembled Sequences
ABACAS is intended to rapidly contiguate (align, order, orientate),
visualize and design primers to close gaps on shotgun assembled contigs
based on a reference sequence.
.
ABACAS uses MUMmer to find alignment positions and identify syntenies
of assembled contigs against the reference. The output is then processed
to generate a pseudomolecule taking overlapping contigs and gaps in to
account. ABACAS generates a comparison file that can be used to
visualize ordered and oriented contigs in ACT. Synteny is represented by
red bars where colour intensity decreases with lower values of percent
identity between comparable blocks. Information on contigs such as the
orientation, percent identity, coverage and overlap with other contigs
can also be visualized by loading the outputted feature file on ACT.