RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-03 4.4.0-83-generic #106-Ubuntu SMP Mon Jun 26 17:54:43 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_144 python-lpbuildd_144 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.1 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.14. Syncing the system clock with the buildd NTP service... 1 Jul 11:06:35 ntpdate[1794]: adjust time server 10.211.37.1 offset 0.004081 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-12836060', '/home/buildd/filecache-default/7fe38ae672de2c40a7e6ba74a0e6690544a5bb48'] Unpacking chroot for build PACKAGEBUILD-12836060 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-12836060'] Mounting chroot for build PACKAGEBUILD-12836060 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-12836060', 'deb http://ftpmaster.internal/ubuntu artful main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu artful-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu artful-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu artful-proposed main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-12836060 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-12836060', 'i386'] Updating debian chroot for build PACKAGEBUILD-12836060 Get:1 http://ftpmaster.internal/ubuntu artful InRelease [237 kB] Get:2 http://ftpmaster.internal/ubuntu artful-security InRelease [65.5 kB] Get:3 http://ftpmaster.internal/ubuntu artful-updates InRelease [65.5 kB] Get:4 http://ftpmaster.internal/ubuntu artful-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main i386 Packages [1162 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main Translation-en [566 kB] Get:7 http://ftpmaster.internal/ubuntu artful/restricted i386 Packages [8644 B] Get:8 http://ftpmaster.internal/ubuntu artful/restricted Translation-en [2724 B] Get:9 http://ftpmaster.internal/ubuntu artful/universe i386 Packages [8234 kB] Get:10 http://ftpmaster.internal/ubuntu artful/universe Translation-en [4757 kB] Get:11 http://ftpmaster.internal/ubuntu artful/multiverse i386 Packages [148 kB] Get:12 http://ftpmaster.internal/ubuntu artful/multiverse Translation-en [109 kB] Get:13 http://ftpmaster.internal/ubuntu artful-proposed/main i386 Packages [92.2 kB] Get:14 http://ftpmaster.internal/ubuntu artful-proposed/main Translation-en [37.9 kB] Get:15 http://ftpmaster.internal/ubuntu artful-proposed/universe i386 Packages [177 kB] Get:16 http://ftpmaster.internal/ubuntu artful-proposed/universe Translation-en [97.4 kB] Get:17 http://ftpmaster.internal/ubuntu artful-proposed/multiverse i386 Packages [696 B] Get:18 http://ftpmaster.internal/ubuntu artful-proposed/multiverse Translation-en [348 B] Fetched 16.0 MB in 3s (4237 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-7-base The following packages will be upgraded: advancecomp apt apt-transport-https base-files bash binutils bsdutils ca-certificates cpp-6 debianutils dmsetup dpkg dpkg-dev findutils g++-6 gcc-6 gcc-6-base init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libcc1-0 libcilkrts5 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libip4tc0 libitm1 libkmod2 libkrb5-26-heimdal libldap-2.4-2 libldap-common libmount1 libmpx2 libnpth0 libperl5.24 libpng16-16 libquadmath0 libroken18-heimdal libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login mount openssl passwd perl perl-base perl-modules-5.24 systemd systemd-sysv tzdata util-linux 83 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 54.3 MB of archives. After this operation, 2120 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu artful/main i386 libperl5.24 i386 5.24.1-4ubuntu1 [3090 kB] Get:2 http://ftpmaster.internal/ubuntu artful/main i386 perl i386 5.24.1-4ubuntu1 [219 kB] Get:3 http://ftpmaster.internal/ubuntu artful/main i386 perl-base i386 5.24.1-4ubuntu1 [1440 kB] Get:4 http://ftpmaster.internal/ubuntu artful/main i386 perl-modules-5.24 all 5.24.1-4ubuntu1 [2663 kB] Get:5 http://ftpmaster.internal/ubuntu artful-proposed/main i386 init-system-helpers all 1.48 [37.8 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main i386 base-files i386 9.6ubuntu101 [59.1 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main i386 debianutils i386 4.8.1.1 [85.7 kB] Get:8 http://ftpmaster.internal/ubuntu artful/main i386 bash i386 4.4-5ubuntu1 [622 kB] Get:9 http://ftpmaster.internal/ubuntu artful/main i386 bsdutils i386 1:2.29-1ubuntu3 [57.9 kB] Get:10 http://ftpmaster.internal/ubuntu artful/main i386 dpkg i386 1.18.24ubuntu1 [1164 kB] Get:11 http://ftpmaster.internal/ubuntu artful/main i386 findutils i386 4.6.0+git+20170606-2 [303 kB] Get:12 http://ftpmaster.internal/ubuntu artful/main i386 login i386 1:4.2-3.2ubuntu2 [306 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main i386 util-linux i386 2.29-1ubuntu3 [952 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main i386 mount i386 2.29-1ubuntu3 [137 kB] Get:15 http://ftpmaster.internal/ubuntu artful-proposed/main i386 gcc-7-base i386 7.1.0-8ubuntu2 [18.7 kB] Get:16 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libgcc1 i386 1:7.1.0-8ubuntu2 [47.0 kB] Get:17 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libstdc++6 i386 7.1.0-8ubuntu2 [436 kB] Get:18 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libapt-pkg5.0 i386 1.5~alpha4 [860 kB] Get:19 http://ftpmaster.internal/ubuntu artful-proposed/main i386 apt-transport-https i386 1.5~alpha4 [38.6 kB] Get:20 http://ftpmaster.internal/ubuntu artful/main i386 libtasn1-6 i386 4.12-2 [38.6 kB] Get:21 http://ftpmaster.internal/ubuntu artful/main i386 libgnutls30 i386 3.5.8-6ubuntu1 [692 kB] Get:22 http://ftpmaster.internal/ubuntu artful-proposed/main i386 apt i386 1.5~alpha4 [1138 kB] Get:23 http://ftpmaster.internal/ubuntu artful/main i386 libip4tc0 i386 1.6.0+snapshot20161117-6ubuntu1 [20.3 kB] Get:24 http://ftpmaster.internal/ubuntu artful/main i386 libapparmor1 i386 2.11.0-2ubuntu8 [31.2 kB] Get:25 http://ftpmaster.internal/ubuntu artful/main i386 libaudit-common all 1:2.6.6-1ubuntu3 [4524 B] Get:26 http://ftpmaster.internal/ubuntu artful/main i386 libaudit1 i386 1:2.6.6-1ubuntu3 [38.9 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main i386 libselinux1 i386 2.6-3build1 [73.0 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main i386 libsemanage-common all 2.6-2build1 [6738 B] Get:29 http://ftpmaster.internal/ubuntu artful/main i386 libsemanage1 i386 2.6-2build1 [89.9 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main i386 passwd i386 1:4.2-3.2ubuntu2 [790 kB] Get:31 http://ftpmaster.internal/ubuntu artful/main i386 libuuid1 i386 2.29-1ubuntu3 [15.8 kB] Get:32 http://ftpmaster.internal/ubuntu artful/main i386 libblkid1 i386 2.29-1ubuntu3 [125 kB] Get:33 http://ftpmaster.internal/ubuntu artful/main i386 libgpg-error0 i386 1.27-3 [39.4 kB] Get:34 http://ftpmaster.internal/ubuntu artful/main i386 libgcrypt20 i386 1.7.8-1 [374 kB] Get:35 http://ftpmaster.internal/ubuntu artful/main i386 libkmod2 i386 24-1ubuntu1 [46.0 kB] Get:36 http://ftpmaster.internal/ubuntu artful/main i386 libmount1 i386 2.29-1ubuntu3 [131 kB] Get:37 http://ftpmaster.internal/ubuntu artful-proposed/main i386 systemd i386 233-8ubuntu2 [2493 kB] Get:38 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libsystemd0 i386 233-8ubuntu2 [229 kB] Get:39 http://ftpmaster.internal/ubuntu artful-proposed/main i386 init i386 1.48 [5806 B] Get:40 http://ftpmaster.internal/ubuntu artful-proposed/main i386 systemd-sysv i386 233-8ubuntu2 [12.4 kB] Get:41 http://ftpmaster.internal/ubuntu artful/main i386 libfdisk1 i386 2.29-1ubuntu3 [160 kB] Get:42 http://ftpmaster.internal/ubuntu artful/main i386 libsmartcols1 i386 2.29-1ubuntu3 [76.1 kB] Get:43 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libudev1 i386 233-8ubuntu2 [59.9 kB] Get:44 http://ftpmaster.internal/ubuntu artful/main i386 libdevmapper1.02.1 i386 2:1.02.137-2ubuntu2 [146 kB] Get:45 http://ftpmaster.internal/ubuntu artful/main i386 dmsetup i386 2:1.02.137-2ubuntu2 [72.9 kB] Get:46 http://ftpmaster.internal/ubuntu artful/main i386 libroken18-heimdal i386 7.1.0+dfsg-13 [44.4 kB] Get:47 http://ftpmaster.internal/ubuntu artful/main i386 libasn1-8-heimdal i386 7.1.0+dfsg-13 [187 kB] Get:48 http://ftpmaster.internal/ubuntu artful/main i386 libheimbase1-heimdal i386 7.1.0+dfsg-13 [31.9 kB] Get:49 http://ftpmaster.internal/ubuntu artful/main i386 libhcrypto4-heimdal i386 7.1.0+dfsg-13 [93.4 kB] Get:50 http://ftpmaster.internal/ubuntu artful/main i386 libwind0-heimdal i386 7.1.0+dfsg-13 [48.6 kB] Get:51 http://ftpmaster.internal/ubuntu artful/main i386 libhx509-5-heimdal i386 7.1.0+dfsg-13 [118 kB] Get:52 http://ftpmaster.internal/ubuntu artful/main i386 libsqlite3-0 i386 3.16.2-5 [519 kB] Get:53 http://ftpmaster.internal/ubuntu artful/main i386 libkrb5-26-heimdal i386 7.1.0+dfsg-13 [232 kB] Get:54 http://ftpmaster.internal/ubuntu artful/main i386 libheimntlm0-heimdal i386 7.1.0+dfsg-13 [16.6 kB] Get:55 http://ftpmaster.internal/ubuntu artful/main i386 libgssapi3-heimdal i386 7.1.0+dfsg-13 [108 kB] Get:56 http://ftpmaster.internal/ubuntu artful/main i386 libldap-2.4-2 i386 2.4.44+dfsg-7ubuntu1 [167 kB] Get:57 http://ftpmaster.internal/ubuntu artful/main i386 libldap-common all 2.4.44+dfsg-7ubuntu1 [16.4 kB] Get:58 http://ftpmaster.internal/ubuntu artful/main i386 libnpth0 i386 1.5-2 [7942 B] Get:59 http://ftpmaster.internal/ubuntu artful/main i386 libssl1.0.0 i386 1.0.2g-1ubuntu13 [910 kB] Get:60 http://ftpmaster.internal/ubuntu artful/main i386 tzdata all 2017b-2 [203 kB] Get:61 http://ftpmaster.internal/ubuntu artful/main i386 openssl i386 1.0.2g-1ubuntu13 [506 kB] Get:62 http://ftpmaster.internal/ubuntu artful/main i386 ca-certificates all 20161130+nmu1 [186 kB] Get:63 http://ftpmaster.internal/ubuntu artful/main i386 libpng16-16 i386 1.6.29-3 [181 kB] Get:64 http://ftpmaster.internal/ubuntu artful/main i386 advancecomp i386 2.0-1 [206 kB] Get:65 http://ftpmaster.internal/ubuntu artful-proposed/main i386 binutils i386 2.28.51.20170627-1ubuntu1 [2689 kB] Get:66 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libquadmath0 i386 7.1.0-8ubuntu2 [205 kB] Get:67 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libitm1 i386 7.1.0-8ubuntu2 [30.3 kB] Get:68 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libmpx2 i386 7.1.0-8ubuntu2 [13.0 kB] Get:69 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libubsan0 i386 7.1.0-8ubuntu2 [134 kB] Get:70 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libcilkrts5 i386 7.1.0-8ubuntu2 [47.3 kB] Get:71 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libgomp1 i386 7.1.0-8ubuntu2 [80.3 kB] Get:72 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libatomic1 i386 7.1.0-8ubuntu2 [9692 B] Get:73 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libasan3 i386 6.3.0-21ubuntu1 [307 kB] Get:74 http://ftpmaster.internal/ubuntu artful-proposed/main i386 g++-6 i386 6.3.0-21ubuntu1 [7644 kB] Get:75 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libstdc++-6-dev i386 6.3.0-21ubuntu1 [1455 kB] Get:76 http://ftpmaster.internal/ubuntu artful-proposed/main i386 gcc-6 i386 6.3.0-21ubuntu1 [7481 kB] Get:77 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libgcc-6-dev i386 6.3.0-21ubuntu1 [2333 kB] Get:78 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libcc1-0 i386 7.1.0-8ubuntu2 [41.4 kB] Get:79 http://ftpmaster.internal/ubuntu artful-proposed/main i386 cpp-6 i386 6.3.0-21ubuntu1 [6818 kB] Get:80 http://ftpmaster.internal/ubuntu artful-proposed/main i386 gcc-6-base i386 6.3.0-21ubuntu1 [17.8 kB] Get:81 http://ftpmaster.internal/ubuntu artful/main i386 dpkg-dev all 1.18.24ubuntu1 [608 kB] Get:82 http://ftpmaster.internal/ubuntu artful/main i386 libdpkg-perl all 1.18.24ubuntu1 [209 kB] Get:83 http://ftpmaster.internal/ubuntu artful/main i386 libusb-0.1-4 i386 2:0.1.12-31 [17.7 kB] Get:84 http://ftpmaster.internal/ubuntu artful/main i386 linux-libc-dev i386 4.10.0-26.30 [916 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 54.3 MB in 2s (19.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12465 files and directories currently installed.) Preparing to unpack .../libperl5.24_5.24.1-4ubuntu1_i386.deb ... Unpacking libperl5.24:i386 (5.24.1-4ubuntu1) over (5.24.1-2ubuntu1) ... Preparing to unpack .../perl_5.24.1-4ubuntu1_i386.deb ... Unpacking perl (5.24.1-4ubuntu1) over (5.24.1-2ubuntu1) ... Preparing to unpack .../perl-base_5.24.1-4ubuntu1_i386.deb ... Unpacking perl-base (5.24.1-4ubuntu1) over (5.24.1-2ubuntu1) ... Setting up perl-base (5.24.1-4ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12465 files and directories currently installed.) Preparing to unpack .../perl-modules-5.24_5.24.1-4ubuntu1_all.deb ... Unpacking perl-modules-5.24 (5.24.1-4ubuntu1) over (5.24.1-2ubuntu1) ... Preparing to unpack .../init-system-helpers_1.48_all.deb ... Unpacking init-system-helpers (1.48) over (1.47) ... Setting up init-system-helpers (1.48) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12465 files and directories currently installed.) Preparing to unpack .../base-files_9.6ubuntu101_i386.deb ... Unpacking base-files (9.6ubuntu101) over (9.6ubuntu99) ... Setting up base-files (9.6ubuntu101) ... Installing new version of config file /etc/update-motd.d/50-motd-news ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12465 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.1.1_i386.deb ... Unpacking debianutils (4.8.1.1) over (4.8.1) ... Setting up debianutils (4.8.1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12465 files and directories currently installed.) Preparing to unpack .../bash_4.4-5ubuntu1_i386.deb ... Unpacking bash (4.4-5ubuntu1) over (4.4-2ubuntu1) ... Setting up bash (4.4-5ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12465 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.29-1ubuntu3_i386.deb ... Unpacking bsdutils (1:2.29-1ubuntu3) over (1:2.29-1ubuntu2) ... Setting up bsdutils (1:2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12465 files and directories currently installed.) Preparing to unpack .../dpkg_1.18.24ubuntu1_i386.deb ... Unpacking dpkg (1.18.24ubuntu1) over (1.18.23ubuntu4) ... Setting up dpkg (1.18.24ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12465 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20170606-2_i386.deb ... Unpacking findutils (4.6.0+git+20170606-2) over (4.6.0+git+20161106-2) ... Setting up findutils (4.6.0+git+20170606-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12465 files and directories currently installed.) Preparing to unpack .../login_1%3a4.2-3.2ubuntu2_i386.deb ... Unpacking login (1:4.2-3.2ubuntu2) over (1:4.2-3.2ubuntu1) ... Setting up login (1:4.2-3.2ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12465 files and directories currently installed.) Preparing to unpack .../util-linux_2.29-1ubuntu3_i386.deb ... Unpacking util-linux (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up util-linux (2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12465 files and directories currently installed.) Preparing to unpack .../mount_2.29-1ubuntu3_i386.deb ... Unpacking mount (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up mount (2.29-1ubuntu3) ... Selecting previously unselected package gcc-7-base:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12465 files and directories currently installed.) Preparing to unpack .../gcc-7-base_7.1.0-8ubuntu2_i386.deb ... Unpacking gcc-7-base:i386 (7.1.0-8ubuntu2) ... Setting up gcc-7-base:i386 (7.1.0-8ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12472 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a7.1.0-8ubuntu2_i386.deb ... Unpacking libgcc1:i386 (1:7.1.0-8ubuntu2) over (1:6.3.0-14ubuntu3) ... Setting up libgcc1:i386 (1:7.1.0-8ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12472 files and directories currently installed.) Preparing to unpack .../libstdc++6_7.1.0-8ubuntu2_i386.deb ... Unpacking libstdc++6:i386 (7.1.0-8ubuntu2) over (6.3.0-14ubuntu3) ... Setting up libstdc++6:i386 (7.1.0-8ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12472 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.5~alpha4_i386.deb ... Unpacking libapt-pkg5.0:i386 (1.5~alpha4) over (1.4.1ubuntu2) ... Setting up libapt-pkg5.0:i386 (1.5~alpha4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12472 files and directories currently installed.) Preparing to unpack .../apt-transport-https_1.5~alpha4_i386.deb ... Unpacking apt-transport-https (1.5~alpha4) over (1.4.1ubuntu2) ... Preparing to unpack .../libtasn1-6_4.12-2_i386.deb ... Unpacking libtasn1-6:i386 (4.12-2) over (4.10-1) ... Setting up libtasn1-6:i386 (4.12-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12474 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.5.8-6ubuntu1_i386.deb ... Unpacking libgnutls30:i386 (3.5.8-6ubuntu1) over (3.5.6-4ubuntu4) ... Setting up libgnutls30:i386 (3.5.8-6ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12474 files and directories currently installed.) Preparing to unpack .../apt_1.5~alpha4_i386.deb ... Unpacking apt (1.5~alpha4) over (1.4.1ubuntu2) ... Setting up apt (1.5~alpha4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12473 files and directories currently installed.) Preparing to unpack .../libip4tc0_1.6.0+snapshot20161117-6ubuntu1_i386.deb ... Unpacking libip4tc0:i386 (1.6.0+snapshot20161117-6ubuntu1) over (1.6.0-3ubuntu2) ... Preparing to unpack .../libapparmor1_2.11.0-2ubuntu8_i386.deb ... Unpacking libapparmor1:i386 (2.11.0-2ubuntu8) over (2.11.0-2ubuntu4) ... Preparing to unpack .../libaudit-common_1%3a2.6.6-1ubuntu3_all.deb ... Unpacking libaudit-common (1:2.6.6-1ubuntu3) over (1:2.6.6-1ubuntu1) ... Setting up libaudit-common (1:2.6.6-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12473 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.6.6-1ubuntu3_i386.deb ... Unpacking libaudit1:i386 (1:2.6.6-1ubuntu3) over (1:2.6.6-1ubuntu1) ... Setting up libaudit1:i386 (1:2.6.6-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12473 files and directories currently installed.) Preparing to unpack .../libselinux1_2.6-3build1_i386.deb ... Unpacking libselinux1:i386 (2.6-3build1) over (2.6-3) ... Setting up libselinux1:i386 (2.6-3build1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12473 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.6-2build1_all.deb ... Unpacking libsemanage-common (2.6-2build1) over (2.6-2) ... Setting up libsemanage-common (2.6-2build1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12473 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.6-2build1_i386.deb ... Unpacking libsemanage1:i386 (2.6-2build1) over (2.6-2) ... Setting up libsemanage1:i386 (2.6-2build1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12473 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.2-3.2ubuntu2_i386.deb ... Unpacking passwd (1:4.2-3.2ubuntu2) over (1:4.2-3.2ubuntu1) ... Setting up passwd (1:4.2-3.2ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12473 files and directories currently installed.) Preparing to unpack .../libuuid1_2.29-1ubuntu3_i386.deb ... Unpacking libuuid1:i386 (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up libuuid1:i386 (2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12473 files and directories currently installed.) Preparing to unpack .../libblkid1_2.29-1ubuntu3_i386.deb ... Unpacking libblkid1:i386 (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up libblkid1:i386 (2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12473 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.27-3_i386.deb ... Unpacking libgpg-error0:i386 (1.27-3) over (1.26-2) ... Setting up libgpg-error0:i386 (1.27-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12473 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.8-1_i386.deb ... Unpacking libgcrypt20:i386 (1.7.8-1) over (1.7.6-1) ... Setting up libgcrypt20:i386 (1.7.8-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12473 files and directories currently installed.) Preparing to unpack .../libkmod2_24-1ubuntu1_i386.deb ... Unpacking libkmod2:i386 (24-1ubuntu1) over (22-1.1ubuntu1) ... Preparing to unpack .../libmount1_2.29-1ubuntu3_i386.deb ... Unpacking libmount1:i386 (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up libmount1:i386 (2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12473 files and directories currently installed.) Preparing to unpack .../systemd_233-8ubuntu2_i386.deb ... Unpacking systemd (233-8ubuntu2) over (232-21ubuntu3) ... dpkg: warning: unable to delete old directory '/etc/dbus-1/system.d': Directory not empty dpkg: warning: unable to delete old directory '/etc/dbus-1': Directory not empty Preparing to unpack .../libsystemd0_233-8ubuntu2_i386.deb ... Unpacking libsystemd0:i386 (233-8ubuntu2) over (232-21ubuntu3) ... Setting up libsystemd0:i386 (233-8ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../archives/init_1.48_i386.deb ... Unpacking init (1.48) over (1.47) ... Setting up libapparmor1:i386 (2.11.0-2ubuntu8) ... Setting up libip4tc0:i386 (1.6.0+snapshot20161117-6ubuntu1) ... Setting up libkmod2:i386 (24-1ubuntu1) ... Setting up systemd (233-8ubuntu2) ... Installing new version of config file /etc/systemd/resolved.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.hostname1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.locale1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.network1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.resolve1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.timedate1.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../systemd-sysv_233-8ubuntu2_i386.deb ... Unpacking systemd-sysv (233-8ubuntu2) over (232-21ubuntu3) ... Preparing to unpack .../libfdisk1_2.29-1ubuntu3_i386.deb ... Unpacking libfdisk1:i386 (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up libfdisk1:i386 (2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.29-1ubuntu3_i386.deb ... Unpacking libsmartcols1:i386 (2.29-1ubuntu3) over (2.29-1ubuntu2) ... Setting up libsmartcols1:i386 (2.29-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../libudev1_233-8ubuntu2_i386.deb ... Unpacking libudev1:i386 (233-8ubuntu2) over (232-21ubuntu3) ... Setting up libudev1:i386 (233-8ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../00-libdevmapper1.02.1_2%3a1.02.137-2ubuntu2_i386.deb ... Unpacking libdevmapper1.02.1:i386 (2:1.02.137-2ubuntu2) over (2:1.02.136-1ubuntu5) ... Preparing to unpack .../01-dmsetup_2%3a1.02.137-2ubuntu2_i386.deb ... Unpacking dmsetup (2:1.02.137-2ubuntu2) over (2:1.02.136-1ubuntu5) ... Preparing to unpack .../02-libroken18-heimdal_7.1.0+dfsg-13_i386.deb ... Unpacking libroken18-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../03-libasn1-8-heimdal_7.1.0+dfsg-13_i386.deb ... Unpacking libasn1-8-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../04-libheimbase1-heimdal_7.1.0+dfsg-13_i386.deb ... Unpacking libheimbase1-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../05-libhcrypto4-heimdal_7.1.0+dfsg-13_i386.deb ... Unpacking libhcrypto4-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../06-libwind0-heimdal_7.1.0+dfsg-13_i386.deb ... Unpacking libwind0-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../07-libhx509-5-heimdal_7.1.0+dfsg-13_i386.deb ... Unpacking libhx509-5-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../08-libsqlite3-0_3.16.2-5_i386.deb ... Unpacking libsqlite3-0:i386 (3.16.2-5) over (3.16.2-3) ... Preparing to unpack .../09-libkrb5-26-heimdal_7.1.0+dfsg-13_i386.deb ... Unpacking libkrb5-26-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../10-libheimntlm0-heimdal_7.1.0+dfsg-13_i386.deb ... Unpacking libheimntlm0-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../11-libgssapi3-heimdal_7.1.0+dfsg-13_i386.deb ... Unpacking libgssapi3-heimdal:i386 (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../12-libldap-2.4-2_2.4.44+dfsg-7ubuntu1_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.44+dfsg-7ubuntu1) over (2.4.44+dfsg-4ubuntu1) ... Preparing to unpack .../13-libldap-common_2.4.44+dfsg-7ubuntu1_all.deb ... Unpacking libldap-common (2.4.44+dfsg-7ubuntu1) over (2.4.44+dfsg-4ubuntu1) ... Preparing to unpack .../14-libnpth0_1.5-2_i386.deb ... Unpacking libnpth0:i386 (1.5-2) over (1.3-1) ... Preparing to unpack .../15-libssl1.0.0_1.0.2g-1ubuntu13_i386.deb ... Unpacking libssl1.0.0:i386 (1.0.2g-1ubuntu13) over (1.0.2g-1ubuntu12) ... Preparing to unpack .../16-tzdata_2017b-2_all.deb ... Unpacking tzdata (2017b-2) over (2017b-1) ... Preparing to unpack .../17-openssl_1.0.2g-1ubuntu13_i386.deb ... Unpacking openssl (1.0.2g-1ubuntu13) over (1.0.2g-1ubuntu12) ... Preparing to unpack .../18-ca-certificates_20161130+nmu1_all.deb ... Unpacking ca-certificates (20161130+nmu1) over (20161130) ... Preparing to unpack .../19-libpng16-16_1.6.29-3_i386.deb ... Unpacking libpng16-16:i386 (1.6.29-3) over (1.6.29-2) ... Preparing to unpack .../20-advancecomp_2.0-1_i386.deb ... Unpacking advancecomp (2.0-1) over (1.20-1) ... Preparing to unpack .../21-binutils_2.28.51.20170627-1ubuntu1_i386.deb ... Unpacking binutils (2.28.51.20170627-1ubuntu1) over (2.28-4ubuntu1) ... Preparing to unpack .../22-libquadmath0_7.1.0-8ubuntu2_i386.deb ... Unpacking libquadmath0:i386 (7.1.0-8ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../23-libitm1_7.1.0-8ubuntu2_i386.deb ... Unpacking libitm1:i386 (7.1.0-8ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../24-libmpx2_7.1.0-8ubuntu2_i386.deb ... Unpacking libmpx2:i386 (7.1.0-8ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../25-libubsan0_7.1.0-8ubuntu2_i386.deb ... Unpacking libubsan0:i386 (7.1.0-8ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../26-libcilkrts5_7.1.0-8ubuntu2_i386.deb ... Unpacking libcilkrts5:i386 (7.1.0-8ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../27-libgomp1_7.1.0-8ubuntu2_i386.deb ... Unpacking libgomp1:i386 (7.1.0-8ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../28-libatomic1_7.1.0-8ubuntu2_i386.deb ... Unpacking libatomic1:i386 (7.1.0-8ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../29-libasan3_6.3.0-21ubuntu1_i386.deb ... Unpacking libasan3:i386 (6.3.0-21ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../30-g++-6_6.3.0-21ubuntu1_i386.deb ... Unpacking g++-6 (6.3.0-21ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../31-libstdc++-6-dev_6.3.0-21ubuntu1_i386.deb ... Unpacking libstdc++-6-dev:i386 (6.3.0-21ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../32-gcc-6_6.3.0-21ubuntu1_i386.deb ... Unpacking gcc-6 (6.3.0-21ubuntu1) over (6.3.0-14ubuntu3) ... Replacing files in old package cpp-6 (6.3.0-14ubuntu3) ... Preparing to unpack .../33-libgcc-6-dev_6.3.0-21ubuntu1_i386.deb ... Unpacking libgcc-6-dev:i386 (6.3.0-21ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../34-libcc1-0_7.1.0-8ubuntu2_i386.deb ... Unpacking libcc1-0:i386 (7.1.0-8ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../35-cpp-6_6.3.0-21ubuntu1_i386.deb ... Unpacking cpp-6 (6.3.0-21ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../36-gcc-6-base_6.3.0-21ubuntu1_i386.deb ... Unpacking gcc-6-base:i386 (6.3.0-21ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../37-dpkg-dev_1.18.24ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.24ubuntu1) over (1.18.23ubuntu4) ... Preparing to unpack .../38-libdpkg-perl_1.18.24ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.24ubuntu1) over (1.18.23ubuntu4) ... Preparing to unpack .../39-libusb-0.1-4_2%3a0.1.12-31_i386.deb ... Unpacking libusb-0.1-4:i386 (2:0.1.12-31) over (2:0.1.12-30) ... Preparing to unpack .../40-linux-libc-dev_4.10.0-26.30_i386.deb ... Unpacking linux-libc-dev:i386 (4.10.0-26.30) over (4.10.0-20.22) ... Setting up libquadmath0:i386 (7.1.0-8ubuntu2) ... Setting up libnpth0:i386 (1.5-2) ... Setting up libgomp1:i386 (7.1.0-8ubuntu2) ... Setting up libatomic1:i386 (7.1.0-8ubuntu2) ... Setting up perl-modules-5.24 (5.24.1-4ubuntu1) ... Setting up libperl5.24:i386 (5.24.1-4ubuntu1) ... Setting up libcc1-0:i386 (7.1.0-8ubuntu2) ... Setting up apt-transport-https (1.5~alpha4) ... Setting up libssl1.0.0:i386 (1.0.2g-1ubuntu13) ... Setting up libpng16-16:i386 (1.6.29-3) ... Setting up libldap-common (2.4.44+dfsg-7ubuntu1) ... Setting up libcilkrts5:i386 (7.1.0-8ubuntu2) ... Setting up tzdata (2017b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jul 1 11:07:03 UTC 2017. Universal Time is now: Sat Jul 1 11:07:03 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (233-8ubuntu2) ... Setting up libubsan0:i386 (7.1.0-8ubuntu2) ... Setting up gcc-6-base:i386 (6.3.0-21ubuntu1) ... Setting up linux-libc-dev:i386 (4.10.0-26.30) ... Setting up advancecomp (2.0-1) ... Setting up libroken18-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libdevmapper1.02.1:i386 (2:1.02.137-2ubuntu2) ... Setting up perl (5.24.1-4ubuntu1) ... Setting up libmpx2:i386 (7.1.0-8ubuntu2) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up libheimbase1-heimdal:i386 (7.1.0+dfsg-13) ... Setting up openssl (1.0.2g-1ubuntu13) ... Setting up libsqlite3-0:i386 (3.16.2-5) ... Setting up dmsetup (2:1.02.137-2ubuntu2) ... Setting up binutils (2.28.51.20170627-1ubuntu1) ... Setting up cpp-6 (6.3.0-21ubuntu1) ... Setting up ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 7 removed; done. Setting up libusb-0.1-4:i386 (2:0.1.12-31) ... Setting up libitm1:i386 (7.1.0-8ubuntu2) ... Setting up libasan3:i386 (6.3.0-21ubuntu1) ... Setting up libgcc-6-dev:i386 (6.3.0-21ubuntu1) ... Setting up libstdc++-6-dev:i386 (6.3.0-21ubuntu1) ... Setting up libwind0-heimdal:i386 (7.1.0+dfsg-13) ... Setting up init (1.48) ... Setting up libasn1-8-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libhcrypto4-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libdpkg-perl (1.18.24ubuntu1) ... Setting up libhx509-5-heimdal:i386 (7.1.0+dfsg-13) ... Setting up gcc-6 (6.3.0-21ubuntu1) ... Setting up g++-6 (6.3.0-21ubuntu1) ... Setting up dpkg-dev (1.18.24ubuntu1) ... Setting up libkrb5-26-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libheimntlm0-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libgssapi3-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libldap-2.4-2:i386 (2.4.44+dfsg-7ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Processing triggers for ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-12836060', 'i386', 'artful-proposed', '-c', 'chroot:autobuild', '--arch=i386', '--dist=artful-proposed', '--purge=never', '--nolog', 'abyss_2.0.2-3.dsc'] Initiating build PACKAGEBUILD-12836060 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-83-generic #106-Ubuntu SMP Mon Jun 26 17:54:43 UTC 2017 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-03.buildd +==============================================================================+ | abyss 2.0.2-3 (i386) 01 Jul 2017 11:07 | +==============================================================================+ Package: abyss Version: 2.0.2-3 Source Version: 2.0.2-3 Distribution: artful-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/abyss-7vxrnF/abyss-2.0.2' with '<>' I: NOTICE: Log filtering will replace 'build/abyss-7vxrnF' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-12836060/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- abyss_2.0.2-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ZGquaP/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-ZGquaP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ZGquaP/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ZGquaP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ZGquaP/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-ZGquaP/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (250 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 778 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ZGquaP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [778 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 778 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12490 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), dh-autoreconf, python-markdown, libboost-graph-dev, libopenmpi-dev, libsparsehash-dev, libtext-multimarkdown-perl, libgtest-dev, libsqlite3-dev Filtered Build-Depends: debhelper (>= 10), dh-autoreconf, python-markdown, libboost-graph-dev, libopenmpi-dev, libsparsehash-dev, libtext-multimarkdown-perl, libgtest-dev, libsqlite3-dev dpkg-deb: building package 'sbuild-build-depends-abyss-dummy' in '/<>/resolver-AEVY0x/apt_archive/sbuild-build-depends-abyss-dummy.deb'. Ign:1 copy:/<>/resolver-AEVY0x/apt_archive ./ InRelease Get:2 copy:/<>/resolver-AEVY0x/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-AEVY0x/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-AEVY0x/apt_archive ./ Sources [285 B] Get:5 copy:/<>/resolver-AEVY0x/apt_archive ./ Packages [605 B] Fetched 3009 B in 0s (283 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install abyss build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base googletest groff-base intltool-debian libarchive-zip-perl libboost-graph-dev libboost-graph1.62-dev libboost-graph1.62.0 libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-test1.62-dev libboost-test1.62.0 libboost1.62-dev libbsd0 libcroco3 libexpat1 libfabric1 libfile-stripnondeterminism-perl libglib2.0-0 libgtest-dev libhtml-parser-perl libhtml-tagset-perl libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1 libpsm-infinipath1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib librdmacm1 libsigsegv2 libsparsehash-dev libsqlite3-dev libtext-markdown-perl libtext-multimarkdown-perl libtimedate-perl libtool liburi-perl libxml2 m4 man-db mime-support ocl-icd-libopencl1 openmpi-common po-debconf python python-markdown python-minimal python2.7 python2.7-minimal Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff graphviz libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev libdata-dump-perl libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils sqlite3-doc gfortran | fortran95-compiler gcj-jdk libwww-perl m4-doc less www-browser opencl-icd libmail-box-perl python-doc python-tk python-markdown-doc python2.7-doc binfmt-support Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libhttp-message-perl openmpi-bin xml-core libmail-sendmail-perl python-pygments python-yaml The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base googletest groff-base intltool-debian libarchive-zip-perl libboost-graph-dev libboost-graph1.62-dev libboost-graph1.62.0 libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-test1.62-dev libboost-test1.62.0 libboost1.62-dev libbsd0 libcroco3 libexpat1 libfabric1 libfile-stripnondeterminism-perl libglib2.0-0 libgtest-dev libhtml-parser-perl libhtml-tagset-perl libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1 libpsm-infinipath1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib librdmacm1 libsigsegv2 libsparsehash-dev libsqlite3-dev libtext-markdown-perl libtext-multimarkdown-perl libtimedate-perl libtool liburi-perl libxml2 m4 man-db mime-support ocl-icd-libopencl1 openmpi-common po-debconf python python-markdown python-minimal python2.7 python2.7-minimal sbuild-build-depends-abyss-dummy 0 upgraded, 77 newly installed, 1 to remove and 0 not upgraded. Need to get 35.3 MB of archives. After this operation, 235 MB of additional disk space will be used. Get:1 copy:/<>/resolver-AEVY0x/apt_archive ./ sbuild-build-depends-abyss-dummy 0.invalid.0 [856 B] Get:2 http://ftpmaster.internal/ubuntu artful/main i386 groff-base i386 1.22.3-9 [1163 kB] Get:3 http://ftpmaster.internal/ubuntu artful/main i386 libbsd0 i386 0.8.5-1 [44.9 kB] Get:4 http://ftpmaster.internal/ubuntu artful/main i386 bsdmainutils i386 9.0.12ubuntu1 [175 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main i386 libpipeline1 i386 1.4.1-2 [26.5 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main i386 man-db i386 2.7.6.1-2 [906 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main i386 libpython2.7-minimal i386 2.7.13-2 [338 kB] Get:8 http://ftpmaster.internal/ubuntu artful/main i386 python2.7-minimal i386 2.7.13-2 [1360 kB] Get:9 http://ftpmaster.internal/ubuntu artful/main i386 python-minimal i386 2.7.13-2 [28.2 kB] Get:10 http://ftpmaster.internal/ubuntu artful/main i386 mime-support all 3.60ubuntu1 [30.1 kB] Get:11 http://ftpmaster.internal/ubuntu artful/main i386 libexpat1 i386 2.2.1-2 [74.8 kB] Get:12 http://ftpmaster.internal/ubuntu artful/main i386 libpython2.7-stdlib i386 2.7.13-2 [1919 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main i386 python2.7 i386 2.7.13-2 [229 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main i386 libpython-stdlib i386 2.7.13-2 [7774 B] Get:15 http://ftpmaster.internal/ubuntu artful/main i386 python i386 2.7.13-2 [139 kB] Get:16 http://ftpmaster.internal/ubuntu artful/main i386 libmagic-mgc i386 1:5.30-1 [181 kB] Get:17 http://ftpmaster.internal/ubuntu artful/main i386 libmagic1 i386 1:5.30-1 [74.3 kB] Get:18 http://ftpmaster.internal/ubuntu artful/main i386 file i386 1:5.30-1 [21.7 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main i386 gettext-base i386 0.19.8.1-2ubuntu1 [48.9 kB] Get:20 http://ftpmaster.internal/ubuntu artful/main i386 libglib2.0-0 i386 2.53.3-1 [1225 kB] Get:21 http://ftpmaster.internal/ubuntu artful/main i386 libicu57 i386 57.1-6 [7837 kB] Get:22 http://ftpmaster.internal/ubuntu artful/main i386 libnuma1 i386 2.0.11-1ubuntu2 [22.8 kB] Get:23 http://ftpmaster.internal/ubuntu artful/main i386 libxml2 i386 2.9.4+dfsg1-2.2ubuntu1 [733 kB] Get:24 http://ftpmaster.internal/ubuntu artful/main i386 libsigsegv2 i386 2.11-1 [13.5 kB] Get:25 http://ftpmaster.internal/ubuntu artful/main i386 m4 i386 1.4.18-1 [196 kB] Get:26 http://ftpmaster.internal/ubuntu artful/main i386 autoconf all 2.69-10 [321 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main i386 autotools-dev all 20161112.1 [39.5 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main i386 automake all 1:1.15-6ubuntu1 [509 kB] Get:29 http://ftpmaster.internal/ubuntu artful/main i386 autopoint all 0.19.8.1-2ubuntu1 [411 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main i386 libtool all 2.4.6-2 [194 kB] Get:31 http://ftpmaster.internal/ubuntu artful/main i386 dh-autoreconf all 14 [15.5 kB] Get:32 http://ftpmaster.internal/ubuntu artful/main i386 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:33 http://ftpmaster.internal/ubuntu artful/main i386 libfile-stripnondeterminism-perl all 0.035-2 [13.3 kB] Get:34 http://ftpmaster.internal/ubuntu artful/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:35 http://ftpmaster.internal/ubuntu artful/main i386 dh-strip-nondeterminism all 0.035-2 [5018 B] Get:36 http://ftpmaster.internal/ubuntu artful/main i386 libcroco3 i386 0.6.11-3 [87.2 kB] Get:37 http://ftpmaster.internal/ubuntu artful/main i386 gettext i386 0.19.8.1-2ubuntu1 [1088 kB] Get:38 http://ftpmaster.internal/ubuntu artful/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:39 http://ftpmaster.internal/ubuntu artful/main i386 po-debconf all 1.0.20 [232 kB] Get:40 http://ftpmaster.internal/ubuntu artful/main i386 debhelper all 10.4ubuntu3 [876 kB] Get:41 http://ftpmaster.internal/ubuntu artful/universe i386 googletest i386 1.8.0-6 [652 kB] Get:42 http://ftpmaster.internal/ubuntu artful/main i386 libboost1.62-dev i386 1.62.0+dfsg-4build2 [7030 kB] Get:43 http://ftpmaster.internal/ubuntu artful/main i386 libboost-regex1.62.0 i386 1.62.0+dfsg-4build2 [287 kB] Get:44 http://ftpmaster.internal/ubuntu artful/universe i386 libboost-graph1.62.0 i386 1.62.0+dfsg-4build2 [99.7 kB] Get:45 http://ftpmaster.internal/ubuntu artful/main i386 libboost-serialization1.62.0 i386 1.62.0+dfsg-4build2 [110 kB] Get:46 http://ftpmaster.internal/ubuntu artful/main i386 libboost-serialization1.62-dev i386 1.62.0+dfsg-4build2 [150 kB] Get:47 http://ftpmaster.internal/ubuntu artful/universe i386 libboost-test1.62.0 i386 1.62.0+dfsg-4build2 [245 kB] Get:48 http://ftpmaster.internal/ubuntu artful/universe i386 libboost-test1.62-dev i386 1.62.0+dfsg-4build2 [291 kB] Get:49 http://ftpmaster.internal/ubuntu artful/universe i386 libboost-graph1.62-dev i386 1.62.0+dfsg-4build2 [110 kB] Get:50 http://ftpmaster.internal/ubuntu artful/universe i386 libboost-graph-dev i386 1.62.0.1 [2960 B] Get:51 http://ftpmaster.internal/ubuntu artful/main i386 libnl-3-200 i386 3.2.29-0ubuntu3 [55.9 kB] Get:52 http://ftpmaster.internal/ubuntu artful/main i386 libnl-route-3-200 i386 3.2.29-0ubuntu3 [154 kB] Get:53 http://ftpmaster.internal/ubuntu artful/main i386 libibverbs1 i386 1.2.1-2ubuntu1 [33.5 kB] Get:54 http://ftpmaster.internal/ubuntu artful/universe i386 libpsm-infinipath1 i386 3.3+19.g67c0807.open-3 [180 kB] Get:55 http://ftpmaster.internal/ubuntu artful/main i386 librdmacm1 i386 1.1.0-2 [53.1 kB] Get:56 http://ftpmaster.internal/ubuntu artful/universe i386 libfabric1 i386 1.4.0-1 [289 kB] Get:57 http://ftpmaster.internal/ubuntu artful/universe i386 libgtest-dev i386 1.8.0-6 [2716 B] Get:58 http://ftpmaster.internal/ubuntu artful/main i386 libhtml-tagset-perl all 3.20-3 [12.1 kB] Get:59 http://ftpmaster.internal/ubuntu artful/main i386 liburi-perl all 1.71-1 [76.9 kB] Get:60 http://ftpmaster.internal/ubuntu artful/main i386 libhtml-parser-perl i386 3.72-3 [86.8 kB] Get:61 http://ftpmaster.internal/ubuntu artful/main i386 libltdl7 i386 2.4.6-2 [40.5 kB] Get:62 http://ftpmaster.internal/ubuntu artful/main i386 libltdl-dev i386 2.4.6-2 [163 kB] Get:63 http://ftpmaster.internal/ubuntu artful/main i386 libpciaccess0 i386 0.13.4-1ubuntu1 [20.2 kB] Get:64 http://ftpmaster.internal/ubuntu artful/universe i386 libsparsehash-dev all 2.0.2-1 [72.4 kB] Get:65 http://ftpmaster.internal/ubuntu artful/main i386 libsqlite3-dev i386 3.16.2-5 [650 kB] Get:66 http://ftpmaster.internal/ubuntu artful/universe i386 libtext-markdown-perl all 1.000031-2 [29.7 kB] Get:67 http://ftpmaster.internal/ubuntu artful/universe i386 libtext-multimarkdown-perl all 1.000035-1 [24.8 kB] Get:68 http://ftpmaster.internal/ubuntu artful/universe i386 openmpi-common all 2.1.1-6 [140 kB] Get:69 http://ftpmaster.internal/ubuntu artful/universe i386 python-markdown all 2.6.8-1 [55.2 kB] Get:70 http://ftpmaster.internal/ubuntu artful/universe i386 libhwloc5 i386 1.11.5-1 [111 kB] Get:71 http://ftpmaster.internal/ubuntu artful/main i386 libnuma-dev i386 2.0.11-1ubuntu2 [32.3 kB] Get:72 http://ftpmaster.internal/ubuntu artful/universe i386 libhwloc-dev i386 1.11.5-1 [162 kB] Get:73 http://ftpmaster.internal/ubuntu artful/main i386 ocl-icd-libopencl1 i386 2.2.11-1ubuntu1 [31.3 kB] Get:74 http://ftpmaster.internal/ubuntu artful/universe i386 libhwloc-plugins i386 1.11.5-1 [12.9 kB] Get:75 http://ftpmaster.internal/ubuntu artful/main i386 libibverbs-dev i386 1.2.1-2ubuntu1 [101 kB] Get:76 http://ftpmaster.internal/ubuntu artful/universe i386 libopenmpi2 i386 2.1.1-6 [2119 kB] Get:77 http://ftpmaster.internal/ubuntu artful/universe i386 libopenmpi-dev i386 2.1.1-6 [915 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.3 MB in 6s (5748 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12490 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12481 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_i386.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../01-libbsd0_0.8.5-1_i386.deb ... Unpacking libbsd0:i386 (0.8.5-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.12ubuntu1_i386.deb ... Unpacking bsdmainutils (9.0.12ubuntu1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.4.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.7.6.1-2_i386.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libpython2.7-minimal:i386. Preparing to unpack .../05-libpython2.7-minimal_2.7.13-2_i386.deb ... Unpacking libpython2.7-minimal:i386 (2.7.13-2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../06-python2.7-minimal_2.7.13-2_i386.deb ... Unpacking python2.7-minimal (2.7.13-2) ... Selecting previously unselected package python-minimal. Preparing to unpack .../07-python-minimal_2.7.13-2_i386.deb ... Unpacking python-minimal (2.7.13-2) ... Selecting previously unselected package mime-support. Preparing to unpack .../08-mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../09-libexpat1_2.2.1-2_i386.deb ... Unpacking libexpat1:i386 (2.2.1-2) ... Selecting previously unselected package libpython2.7-stdlib:i386. Preparing to unpack .../10-libpython2.7-stdlib_2.7.13-2_i386.deb ... Unpacking libpython2.7-stdlib:i386 (2.7.13-2) ... Selecting previously unselected package python2.7. Preparing to unpack .../11-python2.7_2.7.13-2_i386.deb ... Unpacking python2.7 (2.7.13-2) ... Selecting previously unselected package libpython-stdlib:i386. Preparing to unpack .../12-libpython-stdlib_2.7.13-2_i386.deb ... Unpacking libpython-stdlib:i386 (2.7.13-2) ... Setting up libpython2.7-minimal:i386 (2.7.13-2) ... Setting up python2.7-minimal (2.7.13-2) ... Setting up python-minimal (2.7.13-2) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13765 files and directories currently installed.) Preparing to unpack .../00-python_2.7.13-2_i386.deb ... Unpacking python (2.7.13-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.30-1_i386.deb ... Unpacking libmagic-mgc (1:5.30-1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../02-libmagic1_1%3a5.30-1_i386.deb ... Unpacking libmagic1:i386 (1:5.30-1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.30-1_i386.deb ... Unpacking file (1:5.30-1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.19.8.1-2ubuntu1_i386.deb ... Unpacking gettext-base (0.19.8.1-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../05-libglib2.0-0_2.53.3-1_i386.deb ... Unpacking libglib2.0-0:i386 (2.53.3-1) ... Selecting previously unselected package libicu57:i386. Preparing to unpack .../06-libicu57_57.1-6_i386.deb ... Unpacking libicu57:i386 (57.1-6) ... Selecting previously unselected package libnuma1:i386. Preparing to unpack .../07-libnuma1_2.0.11-1ubuntu2_i386.deb ... Unpacking libnuma1:i386 (2.0.11-1ubuntu2) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../08-libxml2_2.9.4+dfsg1-2.2ubuntu1_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-2.2ubuntu1) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../09-libsigsegv2_2.11-1_i386.deb ... Unpacking libsigsegv2:i386 (2.11-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.18-1_i386.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20161112.1_all.deb ... Unpacking autotools-dev (20161112.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.15-6ubuntu1_all.deb ... Unpacking automake (1:1.15-6ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.19.8.1-2ubuntu1_all.deb ... Unpacking autopoint (0.19.8.1-2ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../15-libtool_2.4.6-2_all.deb ... Unpacking libtool (2.4.6-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../16-dh-autoreconf_14_all.deb ... Unpacking dh-autoreconf (14) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../17-libarchive-zip-perl_1.59-1_all.deb ... Unpacking libarchive-zip-perl (1.59-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../18-libfile-stripnondeterminism-perl_0.035-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.035-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../19-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_0.035-2_all.deb ... Unpacking dh-strip-nondeterminism (0.035-2) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../21-libcroco3_0.6.11-3_i386.deb ... Unpacking libcroco3:i386 (0.6.11-3) ... Selecting previously unselected package gettext. Preparing to unpack .../22-gettext_0.19.8.1-2ubuntu1_i386.deb ... Unpacking gettext (0.19.8.1-2ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../23-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../24-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../25-debhelper_10.4ubuntu3_all.deb ... Unpacking debhelper (10.4ubuntu3) ... Selecting previously unselected package googletest:i386. Preparing to unpack .../26-googletest_1.8.0-6_i386.deb ... Unpacking googletest:i386 (1.8.0-6) ... Selecting previously unselected package libboost1.62-dev:i386. Preparing to unpack .../27-libboost1.62-dev_1.62.0+dfsg-4build2_i386.deb ... Unpacking libboost1.62-dev:i386 (1.62.0+dfsg-4build2) ... Selecting previously unselected package libboost-regex1.62.0:i386. Preparing to unpack .../28-libboost-regex1.62.0_1.62.0+dfsg-4build2_i386.deb ... Unpacking libboost-regex1.62.0:i386 (1.62.0+dfsg-4build2) ... Selecting previously unselected package libboost-graph1.62.0:i386. Preparing to unpack .../29-libboost-graph1.62.0_1.62.0+dfsg-4build2_i386.deb ... Unpacking libboost-graph1.62.0:i386 (1.62.0+dfsg-4build2) ... Selecting previously unselected package libboost-serialization1.62.0:i386. Preparing to unpack .../30-libboost-serialization1.62.0_1.62.0+dfsg-4build2_i386.deb ... Unpacking libboost-serialization1.62.0:i386 (1.62.0+dfsg-4build2) ... Selecting previously unselected package libboost-serialization1.62-dev:i386. Preparing to unpack .../31-libboost-serialization1.62-dev_1.62.0+dfsg-4build2_i386.deb ... Unpacking libboost-serialization1.62-dev:i386 (1.62.0+dfsg-4build2) ... Selecting previously unselected package libboost-test1.62.0:i386. Preparing to unpack .../32-libboost-test1.62.0_1.62.0+dfsg-4build2_i386.deb ... Unpacking libboost-test1.62.0:i386 (1.62.0+dfsg-4build2) ... Selecting previously unselected package libboost-test1.62-dev:i386. Preparing to unpack .../33-libboost-test1.62-dev_1.62.0+dfsg-4build2_i386.deb ... Unpacking libboost-test1.62-dev:i386 (1.62.0+dfsg-4build2) ... Selecting previously unselected package libboost-graph1.62-dev:i386. Preparing to unpack .../34-libboost-graph1.62-dev_1.62.0+dfsg-4build2_i386.deb ... Unpacking libboost-graph1.62-dev:i386 (1.62.0+dfsg-4build2) ... Selecting previously unselected package libboost-graph-dev:i386. Preparing to unpack .../35-libboost-graph-dev_1.62.0.1_i386.deb ... Unpacking libboost-graph-dev:i386 (1.62.0.1) ... Selecting previously unselected package libnl-3-200:i386. Preparing to unpack .../36-libnl-3-200_3.2.29-0ubuntu3_i386.deb ... Unpacking libnl-3-200:i386 (3.2.29-0ubuntu3) ... Selecting previously unselected package libnl-route-3-200:i386. Preparing to unpack .../37-libnl-route-3-200_3.2.29-0ubuntu3_i386.deb ... Unpacking libnl-route-3-200:i386 (3.2.29-0ubuntu3) ... Selecting previously unselected package libibverbs1. Preparing to unpack .../38-libibverbs1_1.2.1-2ubuntu1_i386.deb ... Unpacking libibverbs1 (1.2.1-2ubuntu1) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../39-libpsm-infinipath1_3.3+19.g67c0807.open-3_i386.deb ... Unpacking libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Selecting previously unselected package librdmacm1. Preparing to unpack .../40-librdmacm1_1.1.0-2_i386.deb ... Unpacking librdmacm1 (1.1.0-2) ... Selecting previously unselected package libfabric1. Preparing to unpack .../41-libfabric1_1.4.0-1_i386.deb ... Unpacking libfabric1 (1.4.0-1) ... Selecting previously unselected package libgtest-dev:i386. Preparing to unpack .../42-libgtest-dev_1.8.0-6_i386.deb ... Unpacking libgtest-dev:i386 (1.8.0-6) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../43-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../44-liburi-perl_1.71-1_all.deb ... Unpacking liburi-perl (1.71-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../45-libhtml-parser-perl_3.72-3_i386.deb ... Unpacking libhtml-parser-perl (3.72-3) ... Selecting previously unselected package libltdl7:i386. Preparing to unpack .../46-libltdl7_2.4.6-2_i386.deb ... Unpacking libltdl7:i386 (2.4.6-2) ... Selecting previously unselected package libltdl-dev:i386. Preparing to unpack .../47-libltdl-dev_2.4.6-2_i386.deb ... Unpacking libltdl-dev:i386 (2.4.6-2) ... Selecting previously unselected package libpciaccess0:i386. Preparing to unpack .../48-libpciaccess0_0.13.4-1ubuntu1_i386.deb ... Unpacking libpciaccess0:i386 (0.13.4-1ubuntu1) ... Selecting previously unselected package libsparsehash-dev. Preparing to unpack .../49-libsparsehash-dev_2.0.2-1_all.deb ... Unpacking libsparsehash-dev (2.0.2-1) ... Selecting previously unselected package libsqlite3-dev:i386. Preparing to unpack .../50-libsqlite3-dev_3.16.2-5_i386.deb ... Unpacking libsqlite3-dev:i386 (3.16.2-5) ... Selecting previously unselected package libtext-markdown-perl. Preparing to unpack .../51-libtext-markdown-perl_1.000031-2_all.deb ... Unpacking libtext-markdown-perl (1.000031-2) ... Selecting previously unselected package libtext-multimarkdown-perl. Preparing to unpack .../52-libtext-multimarkdown-perl_1.000035-1_all.deb ... Unpacking libtext-multimarkdown-perl (1.000035-1) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../53-openmpi-common_2.1.1-6_all.deb ... Unpacking openmpi-common (2.1.1-6) ... Selecting previously unselected package python-markdown. Preparing to unpack .../54-python-markdown_2.6.8-1_all.deb ... Unpacking python-markdown (2.6.8-1) ... Selecting previously unselected package libhwloc5:i386. Preparing to unpack .../55-libhwloc5_1.11.5-1_i386.deb ... Unpacking libhwloc5:i386 (1.11.5-1) ... Selecting previously unselected package libnuma-dev:i386. Preparing to unpack .../56-libnuma-dev_2.0.11-1ubuntu2_i386.deb ... Unpacking libnuma-dev:i386 (2.0.11-1ubuntu2) ... Selecting previously unselected package libhwloc-dev:i386. Preparing to unpack .../57-libhwloc-dev_1.11.5-1_i386.deb ... Unpacking libhwloc-dev:i386 (1.11.5-1) ... Selecting previously unselected package ocl-icd-libopencl1:i386. Preparing to unpack .../58-ocl-icd-libopencl1_2.2.11-1ubuntu1_i386.deb ... Unpacking ocl-icd-libopencl1:i386 (2.2.11-1ubuntu1) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../59-libhwloc-plugins_1.11.5-1_i386.deb ... Unpacking libhwloc-plugins (1.11.5-1) ... Selecting previously unselected package libibverbs-dev. Preparing to unpack .../60-libibverbs-dev_1.2.1-2ubuntu1_i386.deb ... Unpacking libibverbs-dev (1.2.1-2ubuntu1) ... Selecting previously unselected package libopenmpi2:i386. Preparing to unpack .../61-libopenmpi2_2.1.1-6_i386.deb ... Unpacking libopenmpi2:i386 (2.1.1-6) ... Selecting previously unselected package libopenmpi-dev. Preparing to unpack .../62-libopenmpi-dev_2.1.1-6_i386.deb ... Unpacking libopenmpi-dev (2.1.1-6) ... Selecting previously unselected package sbuild-build-depends-abyss-dummy. Preparing to unpack .../63-sbuild-build-depends-abyss-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-abyss-dummy (0.invalid.0) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libboost-serialization1.62.0:i386 (1.62.0+dfsg-4build2) ... Setting up libsparsehash-dev (2.0.2-1) ... Setting up libexpat1:i386 (2.2.1-2) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libtext-markdown-perl (1.000031-2) ... Setting up libboost1.62-dev:i386 (1.62.0+dfsg-4build2) ... Setting up libsqlite3-dev:i386 (3.16.2-5) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:i386 (2.11-1) ... Setting up libnuma1:i386 (2.0.11-1ubuntu2) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:i386 (2.53.3-1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-2ubuntu1) ... Setting up libpipeline1:i386 (1.4.1-2) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:i386 (57.1-6) ... Setting up libbsd0:i386 (0.8.5-1) ... Setting up libboost-serialization1.62-dev:i386 (1.62.0+dfsg-4build2) ... Setting up libxml2:i386 (2.9.4+dfsg1-2.2ubuntu1) ... Setting up libmagic-mgc (1:5.30-1) ... Setting up libmagic1:i386 (1:5.30-1) ... Setting up libcroco3:i386 (0.6.11-3) ... Setting up libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Setting up openmpi-common (2.1.1-6) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up liburi-perl (1.71-1) ... Setting up libboost-test1.62.0:i386 (1.62.0+dfsg-4build2) ... Setting up libltdl7:i386 (2.4.6-2) ... Setting up libhtml-parser-perl (3.72-3) ... Setting up libpciaccess0:i386 (0.13.4-1ubuntu1) ... Setting up libnuma-dev:i386 (2.0.11-1ubuntu2) ... Setting up ocl-icd-libopencl1:i386 (2.2.11-1ubuntu1) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:i386 (3.2.29-0ubuntu3) ... Setting up libpython2.7-stdlib:i386 (2.7.13-2) ... Setting up autopoint (0.19.8.1-2ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.035-2) ... Setting up libltdl-dev:i386 (2.4.6-2) ... Setting up gettext (0.19.8.1-2ubuntu1) ... Setting up libboost-regex1.62.0:i386 (1.62.0+dfsg-4build2) ... Setting up python2.7 (2.7.13-2) ... Setting up libnl-route-3-200:i386 (3.2.29-0ubuntu3) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.30-1) ... Setting up libhwloc5:i386 (1.11.5-1) ... Setting up libboost-test1.62-dev:i386 (1.62.0+dfsg-4build2) ... Setting up libtext-multimarkdown-perl (1.000035-1) ... Setting up libpython-stdlib:i386 (2.7.13-2) ... Setting up libhwloc-plugins (1.11.5-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-6ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python (2.7.13-2) ... Setting up python-markdown (2.6.8-1) ... Setting up libtool (2.4.6-2) ... Setting up libibverbs1 (1.2.1-2ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up libhwloc-dev:i386 (1.11.5-1) ... Setting up libboost-graph1.62.0:i386 (1.62.0+dfsg-4build2) ... Setting up libboost-graph1.62-dev:i386 (1.62.0+dfsg-4build2) ... Setting up librdmacm1 (1.1.0-2) ... Setting up googletest:i386 (1.8.0-6) ... Setting up libgtest-dev:i386 (1.8.0-6) ... Setting up libibverbs-dev (1.2.1-2ubuntu1) ... Setting up libfabric1 (1.4.0-1) ... Setting up libboost-graph-dev:i386 (1.62.0.1) ... Setting up libopenmpi2:i386 (2.1.1-6) ... Setting up libopenmpi-dev (2.1.1-6) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up dh-autoreconf (14) ... Setting up dh-strip-nondeterminism (0.035-2) ... Setting up debhelper (10.4ubuntu3) ... Setting up sbuild-build-depends-abyss-dummy (0.invalid.0) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30565 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-83-generic amd64 (i686) Toolchain package versions: binutils_2.28.51.20170627-1ubuntu1 dpkg-dev_1.18.24ubuntu1 g++-6_6.3.0-21ubuntu1 gcc-6_6.3.0-21ubuntu1 libc6-dev_2.24-9ubuntu2 libstdc++-6-dev_6.3.0-21ubuntu1 libstdc++6_7.1.0-8ubuntu2 linux-libc-dev_4.10.0-26.30 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.5~alpha4 apt-transport-https_1.5~alpha4 autoconf_2.69-10 automake_1:1.15-6ubuntu1 autopoint_0.19.8.1-2ubuntu1 autotools-dev_20161112.1 base-files_9.6ubuntu101 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.28.51.20170627-1ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 coreutils_8.26-3ubuntu3 cpp_4:6.3.0-2ubuntu1 cpp-6_6.3.0-21ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.60ubuntu1 debhelper_10.4ubuntu3 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.035-2 diffutils_1:3.5-3 dmsetup_2:1.02.137-2ubuntu2 dpkg_1.18.24ubuntu1 dpkg-dev_1.18.24ubuntu1 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-1ubuntu2 file_1:5.30-1 findutils_4.6.0+git+20170606-2 g++_4:6.3.0-2ubuntu1 g++-6_6.3.0-21ubuntu1 gcc_4:6.3.0-2ubuntu1 gcc-6_6.3.0-21ubuntu1 gcc-6-base_6.3.0-21ubuntu1 gcc-7-base_7.1.0-8ubuntu2 gettext_0.19.8.1-2ubuntu1 gettext-base_0.19.8.1-2ubuntu1 gnupg_2.1.15-1ubuntu7 gnupg-agent_2.1.15-1ubuntu7 googletest_1.8.0-6 gpgv_2.1.15-1ubuntu7 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 init_1.48 init-system-helpers_1.48 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu8 libapt-pkg5.0_1.5~alpha4 libarchive-zip-perl_1.59-1 libasan3_6.3.0-21ubuntu1 libasn1-8-heimdal_7.1.0+dfsg-13 libassuan0_2.4.3-2 libatomic1_7.1.0-8ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.6.6-1ubuntu3 libaudit1_1:2.6.6-1ubuntu3 libblkid1_2.29-1ubuntu3 libboost-graph-dev_1.62.0.1 libboost-graph1.62-dev_1.62.0+dfsg-4build2 libboost-graph1.62.0_1.62.0+dfsg-4build2 libboost-regex1.62.0_1.62.0+dfsg-4build2 libboost-serialization1.62-dev_1.62.0+dfsg-4build2 libboost-serialization1.62.0_1.62.0+dfsg-4build2 libboost-test1.62-dev_1.62.0+dfsg-4build2 libboost-test1.62.0_1.62.0+dfsg-4build2 libboost1.62-dev_1.62.0+dfsg-4build2 libbsd0_0.8.5-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-9ubuntu2 libc-dev-bin_2.24-9ubuntu2 libc6_2.24-9ubuntu2 libc6-dev_2.24-9ubuntu2 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.1.0-8ubuntu2 libcilkrts5_7.1.0-8ubuntu2 libcomerr2_1.43.4-2 libcroco3_0.6.11-3 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.52.1-5ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu2 libdpkg-perl_1.18.24ubuntu1 libexpat1_2.2.1-2 libfabric1_1.4.0-1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu3 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.035-2 libgcc-6-dev_6.3.0-21ubuntu1 libgcc1_1:7.1.0-8ubuntu2 libgcrypt20_1.7.8-1 libgdbm3_1.8.3-14 libglib2.0-0_2.53.3-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.8-6ubuntu1 libgomp1_7.1.0-8ubuntu2 libgpg-error0_1.27-3 libgssapi-krb5-2_1.15-2 libgssapi3-heimdal_7.1.0+dfsg-13 libgtest-dev_1.8.0-6 libhcrypto4-heimdal_7.1.0+dfsg-13 libheimbase1-heimdal_7.1.0+dfsg-13 libheimntlm0-heimdal_7.1.0+dfsg-13 libhogweed4_3.3-1 libhtml-parser-perl_3.72-3 libhtml-tagset-perl_3.20-3 libhwloc-dev_1.11.5-1 libhwloc-plugins_1.11.5-1 libhwloc5_1.11.5-1 libhx509-5-heimdal_7.1.0+dfsg-13 libibverbs-dev_1.2.1-2ubuntu1 libibverbs1_1.2.1-2ubuntu1 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_0.16-1 libip4tc0_1.6.0+snapshot20161117-6ubuntu1 libisl15_0.18-1 libitm1_7.1.0-8ubuntu2 libk5crypto3_1.15-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_24-1ubuntu1 libkrb5-26-heimdal_7.1.0+dfsg-13 libkrb5-3_1.15-2 libkrb5support0_1.15-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.44+dfsg-7ubuntu1 libldap-common_2.4.44+dfsg-7ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libmpx2_7.1.0-8ubuntu2 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-2 libnuma-dev_2.0.11-1ubuntu2 libnuma1_2.0.11-1ubuntu2 libopenmpi-dev_2.1.1-6 libopenmpi2_2.1.1-6 libp11-kit0_0.23.3-5 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpciaccess0_0.13.4-1ubuntu1 libpcre3_2:8.39-3 libperl5.24_5.24.1-4ubuntu1 libpipeline1_1.4.1-2 libpng16-16_1.6.29-3 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.17.0-4 libpsm-infinipath1_3.3+19.g67c0807.open-3 libpython-stdlib_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libquadmath0_7.1.0-8ubuntu2 librdmacm1_1.1.0-2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.1.0+dfsg-13 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-2ubuntu1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3build1 libsemanage-common_2.6-2build1 libsemanage1_2.6-2build1 libsepol1_2.6-2 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu3 libsparsehash-dev_2.0.2-1 libsqlite3-0_3.16.2-5 libsqlite3-dev_3.16.2-5 libss2_1.43.4-2 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-6-dev_6.3.0-21ubuntu1 libstdc++6_7.1.0-8ubuntu2 libsystemd0_233-8ubuntu2 libtasn1-6_4.12-2 libtext-markdown-perl_1.000031-2 libtext-multimarkdown-perl_1.000035-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_7.1.0-8ubuntu2 libudev1_233-8ubuntu2 libunistring0_0.9.3-5.2ubuntu1 liburi-perl_1.71-1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu3 libwind0-heimdal_7.1.0+dfsg-13 libxml2_2.9.4+dfsg1-2.2ubuntu1 linux-libc-dev_4.10.0-26.30 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu2 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.29-1ubuntu3 multiarch-support_2.24-9ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-common_2.1.1-6 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu2 patch_2.7.5-1build1 perl_5.24.1-4ubuntu1 perl-base_5.24.1-4ubuntu1 perl-modules-5.24_5.24.1-4ubuntu1 pinentry-curses_1.0.0-2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.13-2 python-markdown_2.6.8-1 python-minimal_2.7.13-2 python2.7_2.7.13-2 python2.7-minimal_2.7.13-2 readline-common_7.0-0ubuntu2 sbuild-build-depends-abyss-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 systemd_233-8ubuntu2 systemd-sysv_233-8ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 tzdata_2017b-2 ubuntu-keyring_2016.10.27 util-linux_2.29-1ubuntu3 xz-utils_5.2.2-1.2 zlib1g_1:1.2.11.dfsg-0ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Jul 1 00:18:01 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./abyss_2.0.2-3.dsc dpkg-source: info: extracting abyss in abyss-2.0.2 dpkg-source: info: unpacking abyss_2.0.2.orig.tar.gz dpkg-source: info: unpacking abyss_2.0.2-3.debian.tar.xz dpkg-source: info: applying abyss-pe.patch dpkg-source: info: applying abyss-32-bit.patch dpkg-source: info: applying fix_bash_script.patch dpkg-source: info: applying big_endian.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package abyss dpkg-buildpackage: info: source version 2.0.2-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build abyss-2.0.2 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with autoreconf dh_testdir dh_auto_clean dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_testdir -a dh_update_autotools_config -a dh_autoreconf -a configure.ac:11: installing './compile' configure.ac:161: installing './config.guess' configure.ac:161: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' ABYSS/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --with-mpi=/usr/lib/openmpi ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-mpi=/usr/lib/openmpi configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gawk... (cached) mawk checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for ranlib... ranlib checking for ghc... no checking for ghc-pkg... no ./configure: line 5332: : command not found checking for pandoc... no checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for ANSI C header files... (cached) yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for ptrdiff_t... yes checking for mode_t... yes checking for pid_t... yes checking for size_t... yes checking for ssize_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for std::hash... yes checking for std::tr1::hash... yes checking for std::tr1::tuple... yes checking for dup2... yes checking for gethostname... yes checking for getopt_long... yes checking for getpagesize... yes checking for memset... yes checking for strdup... yes checking for strerror... yes checking for strtoul... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for working memcmp... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for _doprnt... no checking whether HOST_NAME_MAX is declared... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking if compiler needs -Werror to reject unknown flags... no checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking mpi.h usability... no checking mpi.h presence... no checking for mpi.h... no checking for MPI_Init in -lmpi... yes checking for sqrt in -lm... yes checking for pow... yes checking for sqrt... yes checking for ceilf... yes checking for dlsym in -ldl... yes checking how to run the C++ preprocessor... g++ -E checking functional usability... yes checking functional presence... yes checking for functional... yes checking tr1/functional usability... yes checking tr1/functional presence... yes checking for tr1/functional... yes checking boost/functional/hash.hpp usability... yes checking boost/functional/hash.hpp presence... yes checking for boost/functional/hash.hpp... yes checking boost/property_map/property_map.hpp usability... yes checking boost/property_map/property_map.hpp presence... yes checking for boost/property_map/property_map.hpp... yes checking google/sparse_hash_map usability... yes checking google/sparse_hash_map presence... yes checking for google/sparse_hash_map... yes checking unordered_map usability... yes checking unordered_map presence... yes checking for unordered_map... yes checking tr1/unordered_map usability... yes checking tr1/unordered_map presence... yes checking for tr1/unordered_map... yes checking unordered_set usability... yes checking unordered_set presence... yes checking for unordered_set... yes checking tr1/unordered_set usability... yes checking tr1/unordered_set presence... yes checking for tr1/unordered_set... yes checking boost/unordered_set.hpp usability... yes checking boost/unordered_set.hpp presence... yes checking for boost/unordered_set.hpp... yes checking sqlite3.h usability... yes checking sqlite3.h presence... yes checking for sqlite3.h... yes checking for main in -lsqlite3... yes checking for g++ option to support OpenMP... -fopenmp checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating ABYSS/Makefile config.status: creating Align/Makefile config.status: creating Assembly/Makefile config.status: creating Common/Makefile config.status: creating DataLayer/Makefile config.status: creating FMIndex/Makefile config.status: creating Graph/Makefile config.status: creating Parallel/Makefile config.status: creating bin/Makefile config.status: creating doc/Makefile config.status: creating dialign/Makefile config.status: creating kmerprint/Makefile config.status: creating AdjList/Makefile config.status: creating Konnector/Makefile config.status: creating DAssembler/Makefile config.status: creating DistanceEst/Makefile config.status: creating Layout/Makefile config.status: creating Map/Makefile config.status: creating Misc/Makefile config.status: creating Overlap/Makefile config.status: creating PopBubbles/Makefile config.status: creating Scaffold/Makefile config.status: creating SimpleGraph/Makefile config.status: creating MergePaths/Makefile config.status: creating KAligner/Makefile config.status: creating PairedDBG/Makefile config.status: creating ParseAligns/Makefile config.status: creating PathOverlap/Makefile config.status: creating Consensus/Makefile config.status: creating FilterGraph/Makefile config.status: creating GapFiller/Makefile config.status: creating Sealer/Makefile config.status: creating lib/gtest-1.7.0/Makefile config.status: creating Unittest/Makefile config.status: creating LogKmerCount/Makefile config.status: creating Bloom/Makefile config.status: creating BloomDBG/Makefile config.status: creating DataBase/Makefile config.status: creating lib/bloomfilter/Makefile config.status: creating lib/rolling-hash/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j4 make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in bin make[4]: Entering directory '/<>/bin' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/bin' Making all in doc make[4]: Entering directory '/<>/doc' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/doc' Making all in Common make[4]: Entering directory '/<>/Common' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-ContigID.o `test -f 'ContigID.cpp' || echo './'`ContigID.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Fcontrol.o `test -f 'Fcontrol.cpp' || echo './'`Fcontrol.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Histogram.o `test -f 'Histogram.cpp' || echo './'`Histogram.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Kmer.o `test -f 'Kmer.cpp' || echo './'`Kmer.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Log.o `test -f 'Log.cpp' || echo './'`Log.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Options.o `test -f 'Options.cpp' || echo './'`Options.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Sequence.o `test -f 'Sequence.cpp' || echo './'`Sequence.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-SignalHandler.o `test -f 'SignalHandler.cpp' || echo './'`SignalHandler.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Timer.o `test -f 'Timer.cpp' || echo './'`Timer.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-Uncompress.o `test -f 'Uncompress.cpp' || echo './'`Uncompress.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libcommon_a-city.o `test -f 'city.cc' || echo './'`city.cc rm -f libcommon.a ar cru libcommon.a libcommon_a-ContigID.o libcommon_a-Fcontrol.o libcommon_a-Histogram.o libcommon_a-Kmer.o libcommon_a-Log.o libcommon_a-Options.o libcommon_a-Sequence.o libcommon_a-SignalHandler.o libcommon_a-Timer.o libcommon_a-Uncompress.o libcommon_a-city.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcommon.a make[4]: Leaving directory '/<>/Common' Making all in Graph make[4]: Entering directory '/<>/Graph' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_gc-gc.o `test -f 'gc.cc' || echo './'`gc.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_todot-todot.o `test -f 'todot.cc' || echo './'`todot.cc g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-gc abyss_gc-gc.o ../Common/libcommon.a -ldl -lm g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L. -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-todot abyss_todot-todot.o ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Graph' Making all in DataLayer make[4]: Entering directory '/<>/DataLayer' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libdatalayer_a-FastaReader.o `test -f 'FastaReader.cpp' || echo './'`FastaReader.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libdatalayer_a-FastaWriter.o `test -f 'FastaWriter.cpp' || echo './'`FastaWriter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_fac-fac.o `test -f 'fac.cc' || echo './'`fac.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_tofastq-abyss-tofastq.o `test -f 'abyss-tofastq.cc' || echo './'`abyss-tofastq.cc rm -f libdatalayer.a ar cru libdatalayer.a libdatalayer_a-FastaReader.o libdatalayer_a-FastaWriter.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libdatalayer.a g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-tofastq abyss_tofastq-abyss-tofastq.o libdatalayer.a ../Common/libcommon.a -ldl -lm g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-fac abyss_fac-fac.o libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/DataLayer' Making all in DataBase make[4]: Entering directory '/<>/DataBase' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libdb_a-DB.o `test -f 'DB.cc' || echo './'`DB.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_db_csv-DB.o `test -f 'DB.cc' || echo './'`DB.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_db_csv-db-csv.o `test -f 'db-csv.cc' || echo './'`db-csv.cc rm -f libdb.a ar cru libdb.a libdb_a-DB.o ../Common/libcommon.a ar: `u' modifier ignored since `D' is the default (see `U') ranlib libdb.a g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-db-csv abyss_db_csv-DB.o abyss_db_csv-db-csv.o -lsqlite3 -ldl -lm make[4]: Leaving directory '/<>/DataBase' Making all in FMIndex make[4]: Entering directory '/<>/FMIndex' g++ -DHAVE_CONFIG_H -I. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libfmindex_a-bit_array.o `test -f 'bit_array.cc' || echo './'`bit_array.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_count-count.o `test -f 'count.cc' || echo './'`count.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_dawg-abyss-dawg.o `test -f 'abyss-dawg.cc' || echo './'`abyss-dawg.cc rm -f libfmindex.a ar cru libfmindex.a libfmindex_a-bit_array.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libfmindex.a g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-count abyss_count-count.o libfmindex.a ../Common/libcommon.a -ldl -lm g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-dawg abyss_dawg-abyss-dawg.o libfmindex.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/FMIndex' Making all in Assembly make[4]: Entering directory '/<>/Assembly' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libassembly_a-AssemblyAlgorithms.o `test -f 'AssemblyAlgorithms.cc' || echo './'`AssemblyAlgorithms.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libassembly_a-Options.o `test -f 'Options.cc' || echo './'`Options.cc rm -f libassembly.a ar cru libassembly.a libassembly_a-AssemblyAlgorithms.o libassembly_a-Options.o ../Common/libcommon.a ar: `u' modifier ignored since `D' is the default (see `U') ranlib libassembly.a make[4]: Leaving directory '/<>/Assembly' Making all in dialign make[4]: Entering directory '/<>/dialign' gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alig.o alig.c gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o assemble.o assemble.c gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o diag.o diag.c gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o io.o io.c alig.c:15:20: warning: inline function ‘calc_ov_weight’ declared but never defined extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, ^~~~~~~~~~~~~~ alig.c:13:20: warning: inline function ‘calc_weight’ declared but never defined extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix, ^~~~~~~~~~~ diag.c:1456:3: warning: ‘real_calc_weight’ is static but used in inline function ‘find_diags_dyn’ which is not static real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn); ^~~~~~~~~~~~~~~~ io.c: In function ‘read_scr_matrix’: io.c:270:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf( fp, "%i", &is); ^~~~~~~~~~~~~~~~~~~~~~ io.c:282:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%s\n", rline); ^~~~~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘read_diag_prob_dist’: io.c:371:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assemble.c:40:20: warning: inline function ‘align_diag’ declared but never defined extern inline char align_diag(struct alignment *algn, struct scr_matrix *smatrix, struct diag* dg); ^~~~~~~~~~ assemble.c:37:32: warning: inline function ‘find_eqc’ declared but never defined extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos); ^~~~~~~~ assemble.c:25:39: warning: inline function ‘find_diags_guided’ declared but never defined extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix, ^~~~~~~~~~~~~~~~~ assemble.c:15:20: warning: inline function ‘calc_ov_weight’ declared but never defined extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, ^~~~~~~~~~~~~~ assemble.c:13:20: warning: inline function ‘calc_weight’ declared but never defined extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix, ^~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o orf.o orf.c gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parameters.o parameters.c gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o prob.o prob.c gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o translate.o translate.c gcc -DHAVE_CONFIG_H -I. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o museq.o museq.c museq.c: In function ‘main’: museq.c:168:2: warning: implicit declaration of function ‘free_diag’ [-Wimplicit-function-declaration] free_diag(adcol.diags[i]); ^~~~~~~~~ museq.c:278:27: warning: implicit declaration of function ‘free_alignment’ [-Wimplicit-function-declaration] if(! para->FAST_MODE) free_alignment(algn); ^~~~~~~~~~~~~~ rm -f libdialign.a ar cru libdialign.a alig.o assemble.o diag.o io.o orf.o parameters.o prob.o translate.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libdialign.a gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o dialign museq.o libdialign.a -ldl -lm make[4]: Leaving directory '/<>/dialign' Making all in Align make[4]: Entering directory '/<>/Align' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libalign_a-alignGlobal.o `test -f 'alignGlobal.cc' || echo './'`alignGlobal.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libalign_a-dialign.o `test -f 'dialign.cpp' || echo './'`dialign.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libalign_a-dna_diag_prob.o `test -f 'dna_diag_prob.cc' || echo './'`dna_diag_prob.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o libalign_a-smith_waterman.o `test -f 'smith_waterman.cpp' || echo './'`smith_waterman.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_align-align.o `test -f 'align.cc' || echo './'`align.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_mergepairs-mergepairs.o `test -f 'mergepairs.cc' || echo './'`mergepairs.cc rm -f libalign.a ar cru libalign.a libalign_a-alignGlobal.o libalign_a-dialign.o libalign_a-dna_diag_prob.o libalign_a-smith_waterman.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libalign.a g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-align abyss_align-align.o ./libalign.a ../dialign/libdialign.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-mergepairs abyss_mergepairs-mergepairs.o ./libalign.a ../dialign/libdialign.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Align' Making all in ABYSS make[4]: Entering directory '/<>/ABYSS' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o ABYSS-abyss.o `test -f 'abyss.cc' || echo './'`abyss.cc g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ABYSS ABYSS-abyss.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Assembly/libassembly.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/ABYSS' Making all in Bloom make[4]: Entering directory '/<>/Bloom' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_bloom-bloom.o `test -f 'bloom.cc' || echo './'`bloom.cc g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-bloom abyss_bloom-bloom.o ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Bloom' Making all in BloomDBG make[4]: Entering directory '/<>/BloomDBG' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_bloom_dbg-bloom-dbg.o `test -f 'bloom-dbg.cc' || echo './'`bloom-dbg.cc g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-bloom-dbg abyss_bloom_dbg-bloom-dbg.o ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/BloomDBG' Making all in Konnector make[4]: Entering directory '/<>/Konnector' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o konnector-konnector.o `test -f 'konnector.cc' || echo './'`konnector.cc g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o konnector konnector-konnector.o ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Konnector' Making all in Consensus make[4]: Entering directory '/<>/Consensus' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Consensus-Consensus.o `test -f 'Consensus.cpp' || echo './'`Consensus.cpp g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o Consensus Consensus-Consensus.o ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Consensus' Making all in DAssembler make[4]: Entering directory '/<>/DAssembler' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DAssembler-DAssembler.o `test -f 'DAssembler.cpp' || echo './'`DAssembler.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DAssembler-RotatedRead.o `test -f 'RotatedRead.cpp' || echo './'`RotatedRead.cpp g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o DAssembler DAssembler-DAssembler.o DAssembler-RotatedRead.o ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/DAssembler' Making all in DistanceEst make[4]: Entering directory '/<>/DistanceEst' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DistanceEst-DistanceEst.o `test -f 'DistanceEst.cpp' || echo './'`DistanceEst.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DistanceEst-MLE.o `test -f 'MLE.cpp' || echo './'`MLE.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -D SAM_SEQ_QUAL=1 -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DistanceEst_ssq-DistanceEst.o `test -f 'DistanceEst.cpp' || echo './'`DistanceEst.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -D SAM_SEQ_QUAL=1 -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DistanceEst_ssq-MLE.o `test -f 'MLE.cpp' || echo './'`MLE.cpp g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o DistanceEst DistanceEst-DistanceEst.o DistanceEst-MLE.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Common/libcommon.a -ldl -lm g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o DistanceEst-ssq DistanceEst_ssq-DistanceEst.o DistanceEst_ssq-MLE.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/DistanceEst' Making all in KAligner make[4]: Entering directory '/<>/KAligner' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o KAligner-KAligner.o `test -f 'KAligner.cpp' || echo './'`KAligner.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o KAligner-Aligner.o `test -f 'Aligner.cpp' || echo './'`Aligner.cpp g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o KAligner KAligner-KAligner.o KAligner-Aligner.o ../DataLayer/libdatalayer.a ../Common/libcommon.a -lpthread -ldl -lm make[4]: Leaving directory '/<>/KAligner' Making all in Layout make[4]: Entering directory '/<>/Layout' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_layout-layout.o `test -f 'layout.cc' || echo './'`layout.cc g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-layout abyss_layout-layout.o ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Layout' Making all in LogKmerCount make[4]: Entering directory '/<>/LogKmerCount' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o logcounter-logcounter.o `test -f 'logcounter.cc' || echo './'`logcounter.cc g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o logcounter logcounter-logcounter.o ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/LogKmerCount' Making all in Map make[4]: Entering directory '/<>/Map' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I../FMIndex -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_index-index.o `test -f 'index.cc' || echo './'`index.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I../FMIndex -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_map-map.o `test -f 'map.cc' || echo './'`map.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I../FMIndex -D SAM_SEQ_QUAL=1 -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_map_ssq-map.o `test -f 'map.cc' || echo './'`map.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I../FMIndex -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_overlap-overlap.o `test -f 'overlap.cc' || echo './'`overlap.cc index.cc: In function ‘void buildFMIndex(FMIndex&, const string&)’: index.cc:149:64: warning: large integer implicitly truncated to unsigned type [-Woverflow] size_t MAX_SIZE = numeric_limits::max(); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ overlap.cc: In function ‘void buildFMIndex(FMIndex&, const char*)’: overlap.cc:296:64: warning: large integer implicitly truncated to unsigned type [-Woverflow] size_t MAX_SIZE = numeric_limits::max(); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ map.cc: In function ‘void buildFMIndex(FMIndex&, const char*)’: map.cc:492:64: warning: large integer implicitly truncated to unsigned type [-Woverflow] size_t MAX_SIZE = numeric_limits::max(); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ map.cc: In function ‘void buildFMIndex(FMIndex&, const char*)’: map.cc:492:64: warning: large integer implicitly truncated to unsigned type [-Woverflow] size_t MAX_SIZE = numeric_limits::max(); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-index abyss_index-index.o ../FMIndex/libfmindex.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-map-ssq abyss_map_ssq-map.o ../FMIndex/libfmindex.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../DataBase/libdb.a -lsqlite3 -ldl -lm -ldl -lm g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-map abyss_map-map.o ../FMIndex/libfmindex.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../DataBase/libdb.a -lsqlite3 -ldl -lm -ldl -lm g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-overlap abyss_overlap-overlap.o ../FMIndex/libfmindex.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Map' Making all in MergePaths make[4]: Entering directory '/<>/MergePaths' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o MergePaths-MergePaths.o `test -f 'MergePaths.cpp' || echo './'`MergePaths.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Align -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o MergeContigs-MergeContigs.o `test -f 'MergeContigs.cpp' || echo './'`MergeContigs.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Align -I../Common -I../DataLayer -I../SimpleGraph -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PathConsensus-PathConsensus.o `test -f 'PathConsensus.cpp' || echo './'`PathConsensus.cpp g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o MergeContigs MergeContigs-MergeContigs.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a -ldl -lm g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PathConsensus PathConsensus-PathConsensus.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a ../dialign/libdialign.a -ldl -lm g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o MergePaths MergePaths-MergePaths.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/MergePaths' Making all in Misc make[4]: Entering directory '/<>/Misc' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/Misc' Making all in Overlap make[4]: Entering directory '/<>/Overlap' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Overlap-Overlap.o `test -f 'Overlap.cpp' || echo './'`Overlap.cpp g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o Overlap Overlap-Overlap.o ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Overlap' Making all in PairedDBG make[4]: Entering directory '/<>/PairedDBG' g++ -DHAVE_CONFIG_H -I. -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o KmerPair.o KmerPair.cc g++ -DHAVE_CONFIG_H -I. -I.. -DPAIRED_DBG -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_paired_dbg-abyss-paired-dbg.o `test -f 'abyss-paired-dbg.cc' || echo './'`abyss-paired-dbg.cc g++ -DHAVE_CONFIG_H -I. -I.. -DPAIRED_DBG -I.. -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_paired_dbg-KmerPair.o `test -f 'KmerPair.cc' || echo './'`KmerPair.cc rm -f libpaireddbg.a ar cru libpaireddbg.a KmerPair.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libpaireddbg.a g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-paired-dbg abyss_paired_dbg-abyss-paired-dbg.o abyss_paired_dbg-KmerPair.o ../Assembly/libassembly.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../DataBase/libdb.a -lsqlite3 -ldl -lm -ldl -lm make[4]: Leaving directory '/<>/PairedDBG' Making all in ParseAligns make[4]: Entering directory '/<>/ParseAligns' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_fixmate-abyss-fixmate.o `test -f 'abyss-fixmate.cc' || echo './'`abyss-fixmate.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -D SAM_SEQ_QUAL=1 -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_fixmate_ssq-abyss-fixmate.o `test -f 'abyss-fixmate.cc' || echo './'`abyss-fixmate.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o ParseAligns-ParseAligns.o `test -f 'ParseAligns.cpp' || echo './'`ParseAligns.cpp g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ParseAligns ParseAligns-ParseAligns.o ../Common/libcommon.a -ldl -lm g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-fixmate-ssq abyss_fixmate_ssq-abyss-fixmate.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Common/libcommon.a -ldl -lm g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-fixmate abyss_fixmate-abyss-fixmate.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/ParseAligns' Making all in PathOverlap make[4]: Entering directory '/<>/PathOverlap' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PathOverlap-PathOverlap.o `test -f 'PathOverlap.cpp' || echo './'`PathOverlap.cpp g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PathOverlap PathOverlap-PathOverlap.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/PathOverlap' Making all in PopBubbles make[4]: Entering directory '/<>/PopBubbles' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Align -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PopBubbles-PopBubbles.o `test -f 'PopBubbles.cpp' || echo './'`PopBubbles.cpp g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PopBubbles PopBubbles-PopBubbles.o ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a ../dialign/libdialign.a -ldl -lm make[4]: Leaving directory '/<>/PopBubbles' Making all in Scaffold make[4]: Entering directory '/<>/Scaffold' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_scaffold-scaffold.o `test -f 'scaffold.cc' || echo './'`scaffold.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_junction-junction.o `test -f 'junction.cc' || echo './'`junction.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_longseqdist-longseqdist.o `test -f 'longseqdist.cpp' || echo './'`longseqdist.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_drawgraph-drawgraph.o `test -f 'drawgraph.cc' || echo './'`drawgraph.cc g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-longseqdist abyss_longseqdist-longseqdist.o ../Common/libcommon.a -ldl -lm g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-junction abyss_junction-junction.o ../Common/libcommon.a -ldl -lm g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-drawgraph abyss_drawgraph-drawgraph.o ../Common/libcommon.a -ldl -lm g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-scaffold abyss_scaffold-scaffold.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Scaffold' Making all in SimpleGraph make[4]: Entering directory '/<>/SimpleGraph' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Wno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o SimpleGraph-SimpleGraph.o `test -f 'SimpleGraph.cpp' || echo './'`SimpleGraph.cpp g++ -Wall -Wextra -Wno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o SimpleGraph SimpleGraph-SimpleGraph.o ../DataBase/libdb.a -lsqlite3 -ldl -lm ../Common/libcommon.a -lpthread -ldl -lm make[4]: Leaving directory '/<>/SimpleGraph' Making all in kmerprint make[4]: Entering directory '/<>/kmerprint' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Assembly -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o kmerprint-kmerprint.o `test -f 'kmerprint.cc' || echo './'`kmerprint.cc g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o kmerprint kmerprint-kmerprint.o ../Assembly/libassembly.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/kmerprint' Making all in FilterGraph make[4]: Entering directory '/<>/FilterGraph' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_filtergraph-FilterGraph.o `test -f 'FilterGraph.cc' || echo './'`FilterGraph.cc g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-filtergraph abyss_filtergraph-FilterGraph.o ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/FilterGraph' Making all in GapFiller make[4]: Entering directory '/<>/GapFiller' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I../Align -D SAM_SEQ_QUAL=1 -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_gapfill-gapfill.o `test -f 'gapfill.cpp' || echo './'`gapfill.cpp g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-gapfill abyss_gapfill-gapfill.o ../Align/libalign.a ../dialign/libdialign.a ../DataLayer/libdatalayer.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/GapFiller' Making all in Sealer make[4]: Entering directory '/<>/Sealer' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_sealer-sealer.o `test -f 'sealer.cc' || echo './'`sealer.cc g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o abyss-sealer abyss_sealer-sealer.o ../DataLayer/libdatalayer.a ../Align/libalign.a ../Common/libcommon.a -ldl -lm make[4]: Leaving directory '/<>/Sealer' Making all in AdjList make[4]: Entering directory '/<>/AdjList' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I../DataLayer -DPAIRED_DBG -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o AdjList-AdjList.o `test -f 'AdjList.cpp' || echo './'`AdjList.cpp g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o AdjList AdjList-AdjList.o ../DataLayer/libdatalayer.a ../Common/libcommon.a ../PairedDBG/libpaireddbg.a ../DataBase/libdb.a -lsqlite3 -ldl -lm -ldl -lm make[4]: Leaving directory '/<>/AdjList' Making all in lib/bloomfilter make[4]: Entering directory '/<>/lib/bloomfilter' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/lib/bloomfilter' Making all in lib/rolling-hash make[4]: Entering directory '/<>/lib/rolling-hash' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/lib/rolling-hash' Making all in lib/gtest-1.7.0 make[4]: Entering directory '/<>/lib/gtest-1.7.0' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/lib/gtest-1.7.0' Making all in Unittest make[4]: Entering directory '/<>/Unittest' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/Unittest' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' markdown_py -f README.html README.md make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in bin make[2]: Entering directory '/<>/bin' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/bin' Making check in doc make[2]: Entering directory '/<>/doc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/doc' Making check in Common make[2]: Entering directory '/<>/Common' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Common' Making check in Graph make[2]: Entering directory '/<>/Graph' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Graph' Making check in DataLayer make[2]: Entering directory '/<>/DataLayer' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/DataLayer' Making check in DataBase make[2]: Entering directory '/<>/DataBase' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/DataBase' Making check in FMIndex make[2]: Entering directory '/<>/FMIndex' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/FMIndex' Making check in Assembly make[2]: Entering directory '/<>/Assembly' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Assembly' Making check in dialign make[2]: Entering directory '/<>/dialign' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/dialign' Making check in Align make[2]: Entering directory '/<>/Align' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Align' Making check in ABYSS make[2]: Entering directory '/<>/ABYSS' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/ABYSS' Making check in Bloom make[2]: Entering directory '/<>/Bloom' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Bloom' Making check in BloomDBG make[2]: Entering directory '/<>/BloomDBG' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/BloomDBG' Making check in Konnector make[2]: Entering directory '/<>/Konnector' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Konnector' Making check in Consensus make[2]: Entering directory '/<>/Consensus' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Consensus' Making check in DAssembler make[2]: Entering directory '/<>/DAssembler' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/DAssembler' Making check in DistanceEst make[2]: Entering directory '/<>/DistanceEst' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/DistanceEst' Making check in KAligner make[2]: Entering directory '/<>/KAligner' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/KAligner' Making check in Layout make[2]: Entering directory '/<>/Layout' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Layout' Making check in LogKmerCount make[2]: Entering directory '/<>/LogKmerCount' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/LogKmerCount' Making check in Map make[2]: Entering directory '/<>/Map' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Map' Making check in MergePaths make[2]: Entering directory '/<>/MergePaths' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/MergePaths' Making check in Misc make[2]: Entering directory '/<>/Misc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Misc' Making check in Overlap make[2]: Entering directory '/<>/Overlap' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Overlap' Making check in PairedDBG make[2]: Entering directory '/<>/PairedDBG' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/PairedDBG' Making check in ParseAligns make[2]: Entering directory '/<>/ParseAligns' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/ParseAligns' Making check in PathOverlap make[2]: Entering directory '/<>/PathOverlap' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/PathOverlap' Making check in PopBubbles make[2]: Entering directory '/<>/PopBubbles' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/PopBubbles' Making check in Scaffold make[2]: Entering directory '/<>/Scaffold' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Scaffold' Making check in SimpleGraph make[2]: Entering directory '/<>/SimpleGraph' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/SimpleGraph' Making check in kmerprint make[2]: Entering directory '/<>/kmerprint' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/kmerprint' Making check in FilterGraph make[2]: Entering directory '/<>/FilterGraph' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/FilterGraph' Making check in GapFiller make[2]: Entering directory '/<>/GapFiller' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/GapFiller' Making check in Sealer make[2]: Entering directory '/<>/Sealer' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/Sealer' Making check in AdjList make[2]: Entering directory '/<>/AdjList' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/AdjList' Making check in lib/bloomfilter make[2]: Entering directory '/<>/lib/bloomfilter' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/lib/bloomfilter' Making check in lib/rolling-hash make[2]: Entering directory '/<>/lib/rolling-hash' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/lib/rolling-hash' Making check in lib/gtest-1.7.0 make[2]: Entering directory '/<>/lib/gtest-1.7.0' make libgtest.a libgtest_main.a make[3]: Entering directory '/<>/lib/gtest-1.7.0' g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -isystem ../../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o src/libgtest_a-gtest-all.o `test -f 'src/gtest-all.cc' || echo './'`src/gtest-all.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -isystem ../../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o src/libgtest_main_a-gtest_main.o `test -f 'src/gtest_main.cc' || echo './'`src/gtest_main.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -isystem ../../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o src/libgtest_main_a-gtest-all.o `test -f 'src/gtest-all.cc' || echo './'`src/gtest-all.cc rm -f libgtest.a ar cru libgtest.a src/libgtest_a-gtest-all.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libgtest.a rm -f libgtest_main.a ar cru libgtest_main.a src/libgtest_main_a-gtest_main.o src/libgtest_main_a-gtest-all.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libgtest_main.a make[3]: Leaving directory '/<>/lib/gtest-1.7.0' make[2]: Leaving directory '/<>/lib/gtest-1.7.0' Making check in Unittest make[2]: Entering directory '/<>/Unittest' make common_stringutil common_histogram common_bitutil common_kmer common_sequence common_KmerIterator common_sam BloomFilter Konnector_DBGBloom Konnector_DBGBloomAlgorithms graph_ConstrainedBFSVisitor graph_BidirectionalBFS graph_AllPathsSearch graph_HashGraph graph_ConstrainedBidiBFSVisitor graph_ExtendPath graph_DotIO graph_UndirectedGraph Konnector_konnector DBG_LoadAlgorithm PairedDBG_LoadAlgorithm PairedDBG_KmerPair PairedDBG_Dinuc PairedDBG_BranchRecord BloomDBG_BloomDBG BloomDBG_RollingHash BloomDBG_RollingHashIterator BloomDBG_HashAgnosticCascadingBloom BloomDBG_RollingBloomDBG BloomDBG_MaskedKmer BloomDBG_SpacedSeed make[3]: Entering directory '/<>/Unittest' g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/StringUtilTest.o Common/StringUtilTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/HistogramTest.o Common/HistogramTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/BitUtilTest.o Common/BitUtilTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/KmerTest.o Common/KmerTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/Sequence.o Common/Sequence.cc g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/KmerIteratorTest.o Common/KmerIteratorTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Common/SAM.o Common/SAM.cc g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Konnector/BloomFilter-BloomFilter.o `test -f 'Konnector/BloomFilter.cc' || echo './'`Konnector/BloomFilter.cc g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Konnector/Konnector_DBGBloom-DBGBloomTest.o `test -f 'Konnector/DBGBloomTest.cpp' || echo './'`Konnector/DBGBloomTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Konnector/Konnector_DBGBloomAlgorithms-DBGBloomAlgorithmsTest.o `test -f 'Konnector/DBGBloomAlgorithmsTest.cpp' || echo './'`Konnector/DBGBloomAlgorithmsTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_ConstrainedBFSVisitor-ConstrainedBFSVisitorTest.o `test -f 'Graph/ConstrainedBFSVisitorTest.cpp' || echo './'`Graph/ConstrainedBFSVisitorTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_BidirectionalBFS-BidirectionalBFSTest.o `test -f 'Graph/BidirectionalBFSTest.cpp' || echo './'`Graph/BidirectionalBFSTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_AllPathsSearch-AllPathsSearchTest.o `test -f 'Graph/AllPathsSearchTest.cpp' || echo './'`Graph/AllPathsSearchTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_HashGraph-HashGraphTest.o `test -f 'Graph/HashGraphTest.cpp' || echo './'`Graph/HashGraphTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_ConstrainedBidiBFSVisitor-ConstrainedBidiBFSVisitorTest.o `test -f 'Graph/ConstrainedBidiBFSVisitorTest.cpp' || echo './'`Graph/ConstrainedBidiBFSVisitorTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_ExtendPath-ExtendPathTest.o `test -f 'Graph/ExtendPathTest.cpp' || echo './'`Graph/ExtendPathTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/graph_DotIO-DotIOTest.o `test -f 'Graph/DotIOTest.cpp' || echo './'`Graph/DotIOTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Graph/UndirectedGraphTest.o Graph/UndirectedGraphTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o Konnector/Konnector_konnector-konnectorTest.o `test -f 'Konnector/konnectorTest.cpp' || echo './'`Konnector/konnectorTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../DataLayer -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o DBG/DBG_LoadAlgorithm-LoadAlgorithmTest.o `test -f 'DBG/LoadAlgorithmTest.cpp' || echo './'`DBG/LoadAlgorithmTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../DataLayer -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PairedDBG/PairedDBG_LoadAlgorithm-LoadAlgorithmTest.o `test -f 'PairedDBG/LoadAlgorithmTest.cpp' || echo './'`PairedDBG/LoadAlgorithmTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../DataLayer -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PairedDBG/PairedDBG_KmerPair-KmerPairTest.o `test -f 'PairedDBG/KmerPairTest.cc' || echo './'`PairedDBG/KmerPairTest.cc g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../DataLayer -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PairedDBG/PairedDBG_Dinuc-DinucTest.o `test -f 'PairedDBG/DinucTest.cc' || echo './'`PairedDBG/DinucTest.cc g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../DataLayer -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o PairedDBG/PairedDBG_BranchRecord-BranchRecordTest.o `test -f 'PairedDBG/BranchRecordTest.cpp' || echo './'`PairedDBG/BranchRecordTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I../Common -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/BloomDBG_BloomDBG-BloomDBGTest.o `test -f 'BloomDBG/BloomDBGTest.cpp' || echo './'`BloomDBG/BloomDBGTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/RollingHashTest.o BloomDBG/RollingHashTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/RollingHashIteratorTest.o BloomDBG/RollingHashIteratorTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/BloomDBG_HashAgnosticCascadingBloom-HashAgnosticCascadingBloomTest.o `test -f 'BloomDBG/HashAgnosticCascadingBloomTest.cpp' || echo './'`BloomDBG/HashAgnosticCascadingBloomTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/BloomDBG_RollingBloomDBG-RollingBloomDBGTest.o `test -f 'BloomDBG/RollingBloomDBGTest.cpp' || echo './'`BloomDBG/RollingBloomDBGTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/MaskedKmerTest.o BloomDBG/MaskedKmerTest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -DGTEST_USE_OWN_TR1_TUPLE=0 -I.. -I../lib/gtest-1.7.0/include -I/<> -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<>/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o BloomDBG/SpacedSeedTest.o BloomDBG/SpacedSeedTest.cpp g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_stringutil Common/StringUtilTest.o ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_histogram Common/HistogramTest.o ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_bitutil Common/BitUtilTest.o ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_kmer Common/KmerTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_sequence Common/Sequence.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_KmerIterator Common/KmerIteratorTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o common_sam Common/SAM.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomFilter Konnector/BloomFilter-BloomFilter.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o Konnector_DBGBloom Konnector/Konnector_DBGBloom-DBGBloomTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o Konnector_DBGBloomAlgorithms Konnector/Konnector_DBGBloomAlgorithms-DBGBloomAlgorithmsTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_ConstrainedBFSVisitor Graph/graph_ConstrainedBFSVisitor-ConstrainedBFSVisitorTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_BidirectionalBFS Graph/graph_BidirectionalBFS-BidirectionalBFSTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_AllPathsSearch Graph/graph_AllPathsSearch-AllPathsSearchTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_HashGraph Graph/graph_HashGraph-HashGraphTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_ConstrainedBidiBFSVisitor Graph/graph_ConstrainedBidiBFSVisitor-ConstrainedBidiBFSVisitorTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_ExtendPath Graph/graph_ExtendPath-ExtendPathTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_DotIO Graph/graph_DotIO-DotIOTest.o ../Assembly/libassembly.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o graph_UndirectedGraph Graph/UndirectedGraphTest.o ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o Konnector_konnector Konnector/Konnector_konnector-konnectorTest.o ../Align/libalign.a ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o DBG_LoadAlgorithm DBG/DBG_LoadAlgorithm-LoadAlgorithmTest.o ../Assembly/libassembly.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PairedDBG_LoadAlgorithm PairedDBG/PairedDBG_LoadAlgorithm-LoadAlgorithmTest.o ../PairedDBG/libpaireddbg.a ../Assembly/libassembly.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PairedDBG_KmerPair PairedDBG/PairedDBG_KmerPair-KmerPairTest.o ../PairedDBG/libpaireddbg.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PairedDBG_Dinuc PairedDBG/PairedDBG_Dinuc-DinucTest.o ../PairedDBG/libpaireddbg.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PairedDBG_BranchRecord PairedDBG/PairedDBG_BranchRecord-BranchRecordTest.o ../PairedDBG/libpaireddbg.a ../DataLayer/libdatalayer.a ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_BloomDBG BloomDBG/BloomDBG_BloomDBG-BloomDBGTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_RollingHash BloomDBG/RollingHashTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_RollingHashIterator BloomDBG/RollingHashIteratorTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_HashAgnosticCascadingBloom BloomDBG/BloomDBG_HashAgnosticCascadingBloom-HashAgnosticCascadingBloomTest.o ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_MaskedKmer BloomDBG/MaskedKmerTest.o ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_SpacedSeed BloomDBG/SpacedSeedTest.o ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm g++ -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o BloomDBG_RollingBloomDBG BloomDBG/BloomDBG_RollingBloomDBG-RollingBloomDBGTest.o ../DataLayer/libdatalayer.a ../Common/libcommon.a ../lib/gtest-1.7.0/libgtest_main.a -ldl -lm make[3]: Leaving directory '/<>/Unittest' make check-TESTS make[3]: Entering directory '/<>/Unittest' make[4]: Entering directory '/<>/Unittest' PASS: common_histogram PASS: common_bitutil PASS: common_stringutil PASS: common_kmer PASS: common_sequence PASS: common_KmerIterator PASS: BloomFilter PASS: common_sam PASS: Konnector_DBGBloomAlgorithms PASS: Konnector_DBGBloom PASS: graph_ConstrainedBFSVisitor PASS: graph_BidirectionalBFS PASS: graph_HashGraph PASS: graph_ExtendPath PASS: graph_AllPathsSearch PASS: graph_ConstrainedBidiBFSVisitor PASS: graph_DotIO PASS: graph_UndirectedGraph PASS: Konnector_konnector PASS: PairedDBG_Dinuc PASS: PairedDBG_KmerPair PASS: PairedDBG_BranchRecord PASS: BloomDBG_BloomDBG PASS: BloomDBG_RollingHash PASS: BloomDBG_RollingHashIterator PASS: BloomDBG_RollingBloomDBG PASS: BloomDBG_HashAgnosticCascadingBloom PASS: BloomDBG_MaskedKmer PASS: BloomDBG_SpacedSeed PASS: DBG_LoadAlgorithm PASS: PairedDBG_LoadAlgorithm ============================================================================ Testsuite summary for ABySS 2.0.2 ============================================================================ # TOTAL: 31 # PASS: 31 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/Unittest' make[3]: Leaving directory '/<>/Unittest' make[2]: Leaving directory '/<>/Unittest' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install --destdir=debian/tmp make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in bin make[3]: Entering directory '/<>/bin' make[4]: Entering directory '/<>/bin' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-bowtie abyss-bowtie2 abyss-bwa abyss-bwasw abyss-bwamem abyss-fatoagp abyss-kaligner abyss-pe abyss-samtoafg abyss-tabtomd abyss-bloom-dist.mk abyss-dida '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/bin' make[3]: Leaving directory '/<>/bin' Making install in doc make[3]: Entering directory '/<>/doc' make[4]: Entering directory '/<>/doc' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/abyss' /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 flowchart.pdf flowchart_simplified.pdf '/<>/debian/tmp/usr/share/doc/abyss' /usr/bin/install -c -m 644 ABYSS.1 abyss-pe.1 abyss-tofastq.1 '/<>/debian/tmp/usr/share/man/man1' make[4]: Leaving directory '/<>/doc' make[3]: Leaving directory '/<>/doc' Making install in Common make[3]: Entering directory '/<>/Common' make[4]: Entering directory '/<>/Common' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/Common' make[3]: Leaving directory '/<>/Common' Making install in Graph make[3]: Entering directory '/<>/Graph' make[4]: Entering directory '/<>/Graph' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-gc abyss-todot '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Graph' make[3]: Leaving directory '/<>/Graph' Making install in DataLayer make[3]: Entering directory '/<>/DataLayer' make[4]: Entering directory '/<>/DataLayer' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-fac abyss-tofastq '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/DataLayer' make[3]: Leaving directory '/<>/DataLayer' Making install in DataBase make[3]: Entering directory '/<>/DataBase' make[4]: Entering directory '/<>/DataBase' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-db-csv '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-db-txt '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/DataBase' make[3]: Leaving directory '/<>/DataBase' Making install in FMIndex make[3]: Entering directory '/<>/FMIndex' make[4]: Entering directory '/<>/FMIndex' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/FMIndex' make[3]: Leaving directory '/<>/FMIndex' Making install in Assembly make[3]: Entering directory '/<>/Assembly' make[4]: Entering directory '/<>/Assembly' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/Assembly' make[3]: Leaving directory '/<>/Assembly' Making install in dialign make[3]: Entering directory '/<>/dialign' make[4]: Entering directory '/<>/dialign' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/dialign' make[3]: Leaving directory '/<>/dialign' Making install in Align make[3]: Entering directory '/<>/Align' make[4]: Entering directory '/<>/Align' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-align abyss-mergepairs '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Align' make[3]: Leaving directory '/<>/Align' Making install in ABYSS make[3]: Entering directory '/<>/ABYSS' make[4]: Entering directory '/<>/ABYSS' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c ABYSS '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/ABYSS' make[3]: Leaving directory '/<>/ABYSS' Making install in Bloom make[3]: Entering directory '/<>/Bloom' make[4]: Entering directory '/<>/Bloom' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-bloom '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Bloom' make[3]: Leaving directory '/<>/Bloom' Making install in BloomDBG make[3]: Entering directory '/<>/BloomDBG' make[4]: Entering directory '/<>/BloomDBG' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-bloom-dbg '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/BloomDBG' make[3]: Leaving directory '/<>/BloomDBG' Making install in Konnector make[3]: Entering directory '/<>/Konnector' make[4]: Entering directory '/<>/Konnector' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c konnector '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Konnector' make[3]: Leaving directory '/<>/Konnector' Making install in Consensus make[3]: Entering directory '/<>/Consensus' make[4]: Entering directory '/<>/Consensus' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c Consensus '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Consensus' make[3]: Leaving directory '/<>/Consensus' Making install in DAssembler make[3]: Entering directory '/<>/DAssembler' make[4]: Entering directory '/<>/DAssembler' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c DAssembler '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/DAssembler' make[3]: Leaving directory '/<>/DAssembler' Making install in DistanceEst make[3]: Entering directory '/<>/DistanceEst' make[4]: Entering directory '/<>/DistanceEst' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c DistanceEst DistanceEst-ssq '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/DistanceEst' make[3]: Leaving directory '/<>/DistanceEst' Making install in KAligner make[3]: Entering directory '/<>/KAligner' make[4]: Entering directory '/<>/KAligner' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c KAligner '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/KAligner' make[3]: Leaving directory '/<>/KAligner' Making install in Layout make[3]: Entering directory '/<>/Layout' make[4]: Entering directory '/<>/Layout' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-layout '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Layout' make[3]: Leaving directory '/<>/Layout' Making install in LogKmerCount make[3]: Entering directory '/<>/LogKmerCount' make[4]: Entering directory '/<>/LogKmerCount' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c logcounter '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/LogKmerCount' make[3]: Leaving directory '/<>/LogKmerCount' Making install in Map make[3]: Entering directory '/<>/Map' make[4]: Entering directory '/<>/Map' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-index abyss-map abyss-map-ssq abyss-overlap '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Map' make[3]: Leaving directory '/<>/Map' Making install in MergePaths make[3]: Entering directory '/<>/MergePaths' make[4]: Entering directory '/<>/MergePaths' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c MergePaths MergeContigs PathConsensus '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/MergePaths' make[3]: Leaving directory '/<>/MergePaths' Making install in Misc make[3]: Entering directory '/<>/Misc' make[4]: Entering directory '/<>/Misc' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/Misc' make[3]: Leaving directory '/<>/Misc' Making install in Overlap make[3]: Entering directory '/<>/Overlap' make[4]: Entering directory '/<>/Overlap' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c Overlap '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Overlap' make[3]: Leaving directory '/<>/Overlap' Making install in PairedDBG make[3]: Entering directory '/<>/PairedDBG' make[4]: Entering directory '/<>/PairedDBG' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-paired-dbg '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/PairedDBG' make[3]: Leaving directory '/<>/PairedDBG' Making install in ParseAligns make[3]: Entering directory '/<>/ParseAligns' make[4]: Entering directory '/<>/ParseAligns' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-fixmate abyss-fixmate-ssq ParseAligns '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/ParseAligns' make[3]: Leaving directory '/<>/ParseAligns' Making install in PathOverlap make[3]: Entering directory '/<>/PathOverlap' make[4]: Entering directory '/<>/PathOverlap' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c PathOverlap '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/PathOverlap' make[3]: Leaving directory '/<>/PathOverlap' Making install in PopBubbles make[3]: Entering directory '/<>/PopBubbles' make[4]: Entering directory '/<>/PopBubbles' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c PopBubbles '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/PopBubbles' make[3]: Leaving directory '/<>/PopBubbles' Making install in Scaffold make[3]: Entering directory '/<>/Scaffold' make[4]: Entering directory '/<>/Scaffold' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-scaffold abyss-junction abyss-longseqdist '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Scaffold' make[3]: Leaving directory '/<>/Scaffold' Making install in SimpleGraph make[3]: Entering directory '/<>/SimpleGraph' make[4]: Entering directory '/<>/SimpleGraph' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c SimpleGraph '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/SimpleGraph' make[3]: Leaving directory '/<>/SimpleGraph' Making install in kmerprint make[3]: Entering directory '/<>/kmerprint' make[4]: Entering directory '/<>/kmerprint' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/kmerprint' make[3]: Leaving directory '/<>/kmerprint' Making install in FilterGraph make[3]: Entering directory '/<>/FilterGraph' make[4]: Entering directory '/<>/FilterGraph' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-filtergraph '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/FilterGraph' make[3]: Leaving directory '/<>/FilterGraph' Making install in GapFiller make[3]: Entering directory '/<>/GapFiller' make[4]: Entering directory '/<>/GapFiller' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-gapfill '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/GapFiller' make[3]: Leaving directory '/<>/GapFiller' Making install in Sealer make[3]: Entering directory '/<>/Sealer' make[4]: Entering directory '/<>/Sealer' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c abyss-sealer '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/Sealer' make[3]: Leaving directory '/<>/Sealer' Making install in AdjList make[3]: Entering directory '/<>/AdjList' make[4]: Entering directory '/<>/AdjList' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c AdjList '/<>/debian/tmp/usr/bin' make[4]: Leaving directory '/<>/AdjList' make[3]: Leaving directory '/<>/AdjList' Making install in lib/bloomfilter make[3]: Entering directory '/<>/lib/bloomfilter' make[4]: Entering directory '/<>/lib/bloomfilter' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/lib/bloomfilter' make[3]: Leaving directory '/<>/lib/bloomfilter' Making install in lib/rolling-hash make[3]: Entering directory '/<>/lib/rolling-hash' make[4]: Entering directory '/<>/lib/rolling-hash' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/lib/rolling-hash' make[3]: Leaving directory '/<>/lib/rolling-hash' Making install in lib/gtest-1.7.0 make[3]: Entering directory '/<>/lib/gtest-1.7.0' make[4]: Entering directory '/<>/lib/gtest-1.7.0' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/lib/gtest-1.7.0' make[3]: Leaving directory '/<>/lib/gtest-1.7.0' Making install in Unittest make[3]: Entering directory '/<>/Unittest' make[4]: Entering directory '/<>/Unittest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/Unittest' make[3]: Leaving directory '/<>/Unittest' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/abyss' /usr/bin/install -c -m 644 ChangeLog CITATION.bib CITATION.md COPYRIGHT LICENSE README.md '/<>/debian/tmp/usr/share/doc/abyss' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 131 pkgstriptranslations: processing abyss-dbgsym (in debian/.debhelper/abyss/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/abyss/dbgsym-root/DEBIAN/control, package abyss-dbgsym, directory debian/.debhelper/abyss/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package abyss-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'abyss-dbgsym' in 'debian/.debhelper/scratch-space/build-abyss/abyss-dbgsym_2.0.2-3_i386.deb'. Renaming abyss-dbgsym_2.0.2-3_i386.deb to abyss-dbgsym_2.0.2-3_i386.ddeb INFO: pkgstriptranslations version 131 pkgstriptranslations: processing abyss (in debian/abyss); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/abyss/DEBIAN/control, package abyss, directory debian/abyss pkgstripfiles: Truncating usr/share/doc/abyss/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package abyss ... pkgstripfiles: No PNG files. dpkg-deb: building package 'abyss' in '../abyss_2.0.2-3_i386.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../abyss_2.0.2-3_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build abyss-2.0.2 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20170701-1113 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ abyss_2.0.2-3_i386.changes: --------------------------- Format: 1.8 Date: Fri, 30 Jun 2017 16:56:26 -0400 Source: abyss Binary: abyss Architecture: i386 Version: 2.0.2-3 Distribution: artful-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nadiya Sitdykova Description: abyss - de novo, parallel, sequence assembler for short reads Changes: abyss (2.0.2-3) unstable; urgency=medium . * Team upload. . [ Nadiya Sitdykova ] * Add simple autopkgtest test-suite. . [ Steffen Moeller ] * [debian/upstream/metadata] Added references to bio.tools, OMICtools and RRID . [ Sascha Steinbiss ] * Add missing dependency on bsdmainutils. * Use HTTPS URL for Format entry in d/copyright. * Bump Standards-Version. Checksums-Sha1: fafd5ea80a228e5f4652e0818709781c4d5f02c5 21177178 abyss-dbgsym_2.0.2-3_i386.ddeb 71a2c936303f6e7a25bb33c91be48429b6abb73d 6710 abyss_2.0.2-3_i386.buildinfo 243b161b44c6fd1da831432a1848e20421d8e422 2844488 abyss_2.0.2-3_i386.deb Checksums-Sha256: 5a1998926eb4451e0fae5e41d14adc5617f22daf4b41b404f401461b0bc7419c 21177178 abyss-dbgsym_2.0.2-3_i386.ddeb f2388642569bdd1038a1abc86beb59894ad0edf45a09face848ce159aaea02b1 6710 abyss_2.0.2-3_i386.buildinfo a170f64f88104f00abcecf2cde4f0730d76a59d63caf88e5fedae1d244378f94 2844488 abyss_2.0.2-3_i386.deb Files: 1cc200dcd474698ed0019f65b6f02502 21177178 debug extra abyss-dbgsym_2.0.2-3_i386.ddeb a3500377a320448f56e781a9e26978ab 6710 science optional abyss_2.0.2-3_i386.buildinfo 647f7e5864510d7745114b96d66c514c 2844488 science optional abyss_2.0.2-3_i386.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ abyss_2.0.2-3_i386.deb ---------------------- new debian package, version 2.0. size 2844488 bytes: control archive=2507 bytes. 774 bytes, 16 lines control 4223 bytes, 68 lines md5sums Package: abyss Version: 2.0.2-3 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 8508 Depends: make, libc6 (>= 2.7), libgcc1 (>= 1:4.2), libgomp1 (>= 4.9), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 5.2), perl:any, bsdmainutils Suggests: openmpi-bin Section: science Priority: optional Homepage: http://www.bcgsc.ca/platform/bioinfo/software/abyss Description: de novo, parallel, sequence assembler for short reads ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread. drwxr-xr-x root/root 0 2017-06-30 20:56 ./ drwxr-xr-x root/root 0 2017-06-30 20:56 ./usr/ drwxr-xr-x root/root 0 2017-06-30 20:56 ./usr/bin/ -rwxr-xr-x root/root 161316 2017-06-30 20:56 ./usr/bin/DistanceEst -rwxr-xr-x root/root 149004 2017-06-30 20:56 ./usr/bin/abyss-fixmate -rwxr-xr-x root/root 17831 2017-06-30 20:56 ./usr/bin/abyss-pe drwxr-xr-x root/root 0 2017-06-30 20:56 ./usr/lib/ drwxr-xr-x root/root 0 2017-06-30 20:56 ./usr/lib/abyss/ -rwxr-xr-x root/root 280124 2017-06-30 20:56 ./usr/lib/abyss/ABYSS -rwxr-xr-x root/root 194076 2017-06-30 20:56 ./usr/lib/abyss/AdjList -rwxr-xr-x root/root 75288 2017-06-30 20:56 ./usr/lib/abyss/Consensus -rwxr-xr-x root/root 103976 2017-06-30 20:56 ./usr/lib/abyss/DAssembler -rwxr-xr-x root/root 161316 2017-06-30 20:56 ./usr/lib/abyss/DistanceEst -rwxr-xr-x root/root 161316 2017-06-30 20:56 ./usr/lib/abyss/DistanceEst-ssq -rwxr-xr-x root/root 214564 2017-06-30 20:56 ./usr/lib/abyss/KAligner -rwxr-xr-x root/root 230956 2017-06-30 20:56 ./usr/lib/abyss/MergeContigs -rwxr-xr-x root/root 194072 2017-06-30 20:56 ./usr/lib/abyss/MergePaths -rwxr-xr-x root/root 181800 2017-06-30 20:56 ./usr/lib/abyss/Overlap -rwxr-xr-x root/root 99848 2017-06-30 20:56 ./usr/lib/abyss/ParseAligns -rwxr-xr-x root/root 366120 2017-06-30 20:56 ./usr/lib/abyss/PathConsensus -rwxr-xr-x root/root 181768 2017-06-30 20:56 ./usr/lib/abyss/PathOverlap -rwxr-xr-x root/root 189992 2017-06-30 20:56 ./usr/lib/abyss/PopBubbles -rwxr-xr-x root/root 189988 2017-06-30 20:56 ./usr/lib/abyss/SimpleGraph -rwxr-xr-x root/root 189976 2017-06-30 20:56 ./usr/lib/abyss/abyss-align -rwxr-xr-x root/root 161352 2017-06-30 20:56 ./usr/lib/abyss/abyss-bloom -rwxr-xr-x root/root 202288 2017-06-30 20:56 ./usr/lib/abyss/abyss-bloom-dbg -rwxr-xr-x root/root 6491 2017-06-30 20:56 ./usr/lib/abyss/abyss-bloom-dist.mk -rwxr-xr-x root/root 1135 2017-06-30 20:56 ./usr/lib/abyss/abyss-bowtie -rwxr-xr-x root/root 1192 2017-06-30 20:56 ./usr/lib/abyss/abyss-bowtie2 -rwxr-xr-x root/root 1208 2017-06-30 20:56 ./usr/lib/abyss/abyss-bwa -rwxr-xr-x root/root 1454 2017-06-30 20:56 ./usr/lib/abyss/abyss-bwamem -rwxr-xr-x root/root 1362 2017-06-30 20:56 ./usr/lib/abyss/abyss-bwasw -rwxr-xr-x root/root 71124 2017-06-30 20:56 ./usr/lib/abyss/abyss-db-csv -rwxr-xr-x root/root 703 2017-06-30 20:56 ./usr/lib/abyss/abyss-db-txt -rwxr-xr-x root/root 2739 2017-06-30 20:56 ./usr/lib/abyss/abyss-dida -rwxr-xr-x root/root 91680 2017-06-30 20:56 ./usr/lib/abyss/abyss-fac -rwxr-xr-x root/root 1872 2017-06-30 20:56 ./usr/lib/abyss/abyss-fatoagp -rwxr-xr-x root/root 169508 2017-06-30 20:56 ./usr/lib/abyss/abyss-filtergraph -rwxr-xr-x root/root 149004 2017-06-30 20:56 ./usr/lib/abyss/abyss-fixmate -rwxr-xr-x root/root 153100 2017-06-30 20:56 ./usr/lib/abyss/abyss-fixmate-ssq -rwxr-xr-x root/root 95784 2017-06-30 20:56 ./usr/lib/abyss/abyss-gapfill -rwxr-xr-x root/root 95752 2017-06-30 20:56 ./usr/lib/abyss/abyss-gc -rwxr-xr-x root/root 103952 2017-06-30 20:56 ./usr/lib/abyss/abyss-index -rwxr-xr-x root/root 108044 2017-06-30 20:56 ./usr/lib/abyss/abyss-junction -rwxr-xr-x root/root 39 2017-06-30 20:56 ./usr/lib/abyss/abyss-kaligner -rwxr-xr-x root/root 120336 2017-06-30 20:56 ./usr/lib/abyss/abyss-layout -rwxr-xr-x root/root 108052 2017-06-30 20:56 ./usr/lib/abyss/abyss-longseqdist -rwxr-xr-x root/root 206364 2017-06-30 20:56 ./usr/lib/abyss/abyss-map -rwxr-xr-x root/root 210460 2017-06-30 20:56 ./usr/lib/abyss/abyss-map-ssq -rwxr-xr-x root/root 79408 2017-06-30 20:56 ./usr/lib/abyss/abyss-mergepairs -rwxr-xr-x root/root 214576 2017-06-30 20:56 ./usr/lib/abyss/abyss-overlap -rwxr-xr-x root/root 312896 2017-06-30 20:56 ./usr/lib/abyss/abyss-paired-dbg -rwxr-xr-x root/root 17831 2017-06-30 20:56 ./usr/lib/abyss/abyss-pe -rwxr-xr-x root/root 4505 2017-06-30 20:56 ./usr/lib/abyss/abyss-samtoafg -rwxr-xr-x root/root 235040 2017-06-30 20:56 ./usr/lib/abyss/abyss-scaffold -rwxr-xr-x root/root 226900 2017-06-30 20:56 ./usr/lib/abyss/abyss-sealer -rwxr-xr-x root/root 209 2017-06-30 20:56 ./usr/lib/abyss/abyss-tabtomd -rwxr-xr-x root/root 149004 2017-06-30 20:56 ./usr/lib/abyss/abyss-todot -rwxr-xr-x root/root 63004 2017-06-30 20:56 ./usr/lib/abyss/abyss-tofastq -rwxr-xr-x root/root 271960 2017-06-30 20:56 ./usr/lib/abyss/konnector -rwxr-xr-x root/root 79392 2017-06-30 20:56 ./usr/lib/abyss/logcounter drwxr-xr-x root/root 0 2017-06-30 20:56 ./usr/share/ drwxr-xr-x root/root 0 2017-06-30 20:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-06-30 20:56 ./usr/share/doc/abyss/ -rw-r--r-- root/root 25913 2017-06-30 20:56 ./usr/share/doc/abyss/README.html -rw-r--r-- root/root 7730 2016-10-21 21:48 ./usr/share/doc/abyss/README.md.gz -rw-r--r-- root/root 182 2017-06-30 20:56 ./usr/share/doc/abyss/README.test -rw-r--r-- root/root 1701 2017-06-30 20:56 ./usr/share/doc/abyss/changelog.Debian.gz -rw-r--r-- root/root 6121 2017-06-30 20:56 ./usr/share/doc/abyss/copyright -rw-r--r-- root/root 66778 2016-10-21 21:48 ./usr/share/doc/abyss/flowchart.pdf.gz -rw-r--r-- root/root 299 2017-06-30 20:56 ./usr/share/doc/abyss/run-unit-test drwxr-xr-x root/root 0 2017-06-30 20:56 ./usr/share/doc/abyss/test-data/ -rw-r--r-- root/root 743013 2017-06-30 20:56 ./usr/share/doc/abyss/test-data/reads1.fastq.gz -rw-r--r-- root/root 743377 2017-06-30 20:56 ./usr/share/doc/abyss/test-data/reads2.fastq.gz drwxr-xr-x root/root 0 2017-06-30 20:56 ./usr/share/man/ drwxr-xr-x root/root 0 2017-06-30 20:56 ./usr/share/man/man1/ -rw-r--r-- root/root 1200 2017-06-30 20:56 ./usr/share/man/man1/ABYSS.1.gz -rw-r--r-- root/root 3567 2017-06-30 20:56 ./usr/share/man/man1/abyss-pe.1.gz -rw-r--r-- root/root 408 2017-06-30 20:56 ./usr/share/man/man1/abyss-tofastq.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 417384 Build-Time: 362 Distribution: artful-proposed Host Architecture: i386 Install-Time: 22 Job: abyss_2.0.2-3.dsc Machine Architecture: amd64 Package: abyss Package-Time: 386 Source-Version: 2.0.2-3 Space: 417384 Status: successful Version: 2.0.2-3 -------------------------------------------------------------------------------- Finished at 20170701-1113 Build needed 00:06:26, 417384k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-12836060'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-12836060/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-12836060'] Unmounting chroot for build PACKAGEBUILD-12836060... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-12836060'] Removing build PACKAGEBUILD-12836060