RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux allspice 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Buildd toolchain package versions: launchpad-buildd_119~0.IS.08.04 python-lpbuildd_119~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 17 Nov 17:09:54 ntpdate[19654]: adjust time server 10.211.37.1 offset 0.000211 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5239646', '/home/buildd/filecache-default/37b791c418443a1a9f244249f7640827adb86fb0'] Unpacking chroot for build PACKAGEBUILD-5239646 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5239646'] Mounting chroot for build PACKAGEBUILD-5239646 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5239646', 'deb http://ftpmaster.internal/ubuntu trusty main universe', 'deb http://ftpmaster.internal/ubuntu trusty-security main universe', 'deb http://ftpmaster.internal/ubuntu trusty-updates main universe', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-5239646 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5239646', 'amd64'] Updating debian chroot for build PACKAGEBUILD-5239646 Ign http://ftpmaster.internal trusty InRelease Ign http://ftpmaster.internal trusty-security InRelease Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty-updates InRelease Ign http://archive-team.internal trusty Release.gpg Ign http://ftpmaster.internal trusty-proposed InRelease Get:1 http://archive-team.internal trusty Release [730 B] Get:2 http://ftpmaster.internal trusty Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:4 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal trusty Release [49.6 kB] Get:7 http://ftpmaster.internal trusty-security Release [49.6 kB] Get:8 http://ftpmaster.internal trusty-updates Release [49.6 kB] Get:9 http://archive-team.internal trusty/main amd64 Packages Get:10 http://ftpmaster.internal trusty-proposed Release [49.6 kB] Ign http://archive-team.internal trusty/main Translation-en Get:11 http://ftpmaster.internal trusty/main amd64 Packages [1257 kB] Get:12 http://ftpmaster.internal trusty/universe amd64 Packages [5764 kB] Get:13 http://ftpmaster.internal trusty/main Translation-en [726 kB] Get:14 http://ftpmaster.internal trusty/universe Translation-en [3964 kB] Get:15 http://ftpmaster.internal trusty-security/main amd64 Packages [14 B] Get:16 http://ftpmaster.internal trusty-security/universe amd64 Packages [14 B] Get:17 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal trusty-updates/main amd64 Packages [14 B] Get:20 http://ftpmaster.internal trusty-updates/universe amd64 Packages [14 B] Get:21 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal trusty-proposed/main amd64 Packages [34.5 kB] Get:24 http://ftpmaster.internal trusty-proposed/universe amd64 Packages [165 kB] Get:25 http://ftpmaster.internal trusty-proposed/main Translation-en [18.6 kB] Get:26 http://ftpmaster.internal trusty-proposed/universe Translation-en [94.7 kB] Fetched 12.2 MB in 4s (3012 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libdb5.3 libffi6 libprocps1 The following packages will be upgraded: adduser apt apt-transport-https base-files base-passwd binutils busybox-initramfs bzip2 coreutils cpp-4.8 debconf diffutils dpkg dpkg-dev g++-4.8 gcc-4.8 gcc-4.8-base gnupg gpgv grep ifupdown initramfs-tools initramfs-tools-bin iproute iproute2 kmod libapt-pkg4.12 libasan0 libasn1-8-heimdal libatomic1 libbz2-1.0 libcloog-isl4 libcurl3-gnutls libdbus-1-3 libdpkg-perl libdrm2 libgcc-4.8-dev libgcc1 libgmp10 libgomp1 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libisl10 libitm1 libjson-c2 libjson0 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libmpfr4 libnih-dbus1 libnih1 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpng12-0 libprocps0 libquadmath0 libroken18-heimdal libsasl2-2 libsasl2-modules libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsqlite3-0 libstdc++-4.8-dev libstdc++6 libtsan0 libudev1 libwind0-heimdal linux-libc-dev module-init-tools patch perl perl-base perl-modules procps sed tar udev upstart 93 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 59.4 MB of archives. After this operation, 4833 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files coreutils diffutils dpkg grep libdb5.3 perl perl-base perl-modules bzip2 libbz2-1.0 sed tar libitm1 libgomp1 libasan0 gcc-4.8-base libgcc1 libatomic1 libtsan0 libquadmath0 libmpfr4 cpp-4.8 binutils libstdc++-4.8-dev g++-4.8 gcc-4.8 libgcc-4.8-dev libstdc++6 libgmp10 libcloog-isl4 libisl10 libapt-pkg4.12 gpgv gnupg apt base-passwd debconf libpam0g libselinux1 libpam-modules-bin libpam-modules libsemanage-common libsemanage1 libsepol1 libffi6 libp11-kit0 libsqlite3-0 libdbus-1-3 libdrm2 libjson-c2 libkmod2 libnih-dbus1 libnih1 libpng12-0 libprocps1 procps udev libudev1 kmod module-init-tools libroken18-heimdal libasn1-8-heimdal libkeyutils1 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libhcrypto4-heimdal libheimbase1-heimdal libwind0-heimdal libhx509-5-heimdal libkrb5-26-heimdal libheimntlm0-heimdal libgssapi3-heimdal libsasl2-modules-db libsasl2-2 libldap-2.4-2 libcurl3-gnutls libprocps0 libpam-runtime adduser busybox-initramfs iproute2 ifupdown initramfs-tools initramfs-tools-bin libjson0 upstart apt-transport-https libsasl2-modules dpkg-dev libdpkg-perl patch iproute linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main base-files amd64 6.12ubuntu5 [61.8 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main coreutils amd64 8.21-1ubuntu3 [2487 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main diffutils amd64 1:3.3-1 [206 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dpkg amd64 1.17.1ubuntu1 [2018 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main grep amd64 2.14-4 [298 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libdb5.3 amd64 5.3.28-3 [786 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main perl amd64 5.18.1-4build1 [4469 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main perl-base amd64 5.18.1-4build1 [1582 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main perl-modules all 5.18.1-4build1 [3921 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main bzip2 amd64 1.0.6-5 [38.8 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libbz2-1.0 amd64 1.0.6-5 [33.9 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main sed amd64 4.2.2-2ubuntu1 [143 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main tar amd64 1.27-3 [234 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libitm1 amd64 4.8.2-4ubuntu1 [37.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgomp1 amd64 4.8.2-4ubuntu1 [27.0 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libasan0 amd64 4.8.2-4ubuntu1 [75.5 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty-proposed/main gcc-4.8-base amd64 4.8.2-4ubuntu1 [15.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgcc1 amd64 1:4.8.2-4ubuntu1 [43.3 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libatomic1 amd64 4.8.2-4ubuntu1 [10.3 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libtsan0 amd64 4.8.2-4ubuntu1 [117 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libquadmath0 amd64 4.8.2-4ubuntu1 [139 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main libmpfr4 amd64 3.1.2-1 [203 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty-proposed/main cpp-4.8 amd64 4.8.2-4ubuntu1 [5832 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main binutils amd64 2.23.90.20131116-1ubuntu1 [3581 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libstdc++-4.8-dev amd64 4.8.2-4ubuntu1 [1751 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty-proposed/main g++-4.8 amd64 4.8.2-4ubuntu1 [8613 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty-proposed/main gcc-4.8 amd64 4.8.2-4ubuntu1 [6633 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgcc-4.8-dev amd64 4.8.2-4ubuntu1 [2790 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libstdc++6 amd64 4.8.2-4ubuntu1 [325 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgmp10 amd64 2:5.1.2+dfsg-3ubuntu1 [252 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main libcloog-isl4 amd64 0.18.1-1 [67.8 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main libisl10 amd64 0.12.1-1 [524 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main libapt-pkg4.12 amd64 0.9.9.1~ubuntu4 [825 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main gpgv amd64 1.4.15-1.1ubuntu1 [185 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main gnupg amd64 1.4.15-1.1ubuntu1 [785 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main apt amd64 0.9.9.1~ubuntu4 [1231 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main base-passwd amd64 3.5.28 [39.5 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main debconf all 1.5.51ubuntu1 [148 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main libpam0g amd64 1.1.3-10ubuntu1 [62.2 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main libselinux1 amd64 2.2.1-1ubuntu1 [67.6 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main libpam-modules-bin amd64 1.1.3-10ubuntu1 [48.0 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main libpam-modules amd64 1.1.3-10ubuntu1 [284 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main libsemanage-common all 2.2-1 [6488 B] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main libsemanage1 amd64 2.2-1 [85.6 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty/main libsepol1 amd64 2.2-1 [126 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty/main libffi6 amd64 3.0.13-4 [19.4 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/main libp11-kit0 amd64 0.20.1-2ubuntu1 [97.6 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main libsqlite3-0 amd64 3.8.1-1ubuntu1 [390 kB] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main libdbus-1-3 amd64 1.6.18-0ubuntu1 [154 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main libdrm2 amd64 2.4.46-4 [26.7 kB] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main libjson-c2 amd64 0.11-3ubuntu1 [23.8 kB] Get:52 http://ftpmaster.internal/ubuntu/ trusty/main libkmod2 amd64 15-0ubuntu2 [44.1 kB] Get:53 http://ftpmaster.internal/ubuntu/ trusty/main libnih-dbus1 amd64 1.0.3-4ubuntu24 [16.8 kB] Get:54 http://ftpmaster.internal/ubuntu/ trusty/main libnih1 amd64 1.0.3-4ubuntu24 [55.8 kB] Get:55 http://ftpmaster.internal/ubuntu/ trusty/main libpng12-0 amd64 1.2.49-5ubuntu1 [129 kB] Get:56 http://ftpmaster.internal/ubuntu/ trusty/main libprocps1 amd64 1:3.3.8-2ubuntu1 [36.1 kB] Get:57 http://ftpmaster.internal/ubuntu/ trusty/main procps amd64 1:3.3.8-2ubuntu1 [250 kB] Get:58 http://ftpmaster.internal/ubuntu/ trusty/main udev amd64 204-5ubuntu6 [1043 kB] Get:59 http://ftpmaster.internal/ubuntu/ trusty/main libudev1 amd64 204-5ubuntu6 [41.3 kB] Get:60 http://ftpmaster.internal/ubuntu/ trusty/main kmod amd64 15-0ubuntu2 [95.9 kB] Get:61 http://ftpmaster.internal/ubuntu/ trusty/main module-init-tools all 15-0ubuntu2 [1874 B] Get:62 http://ftpmaster.internal/ubuntu/ trusty/main libroken18-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [45.6 kB] Get:63 http://ftpmaster.internal/ubuntu/ trusty/main libasn1-8-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [218 kB] Get:64 http://ftpmaster.internal/ubuntu/ trusty/main libkeyutils1 amd64 1.5.6-1 [7318 B] Get:65 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libk5crypto3 amd64 1.11.3+dfsg-3ubuntu2 [102 kB] Get:66 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgssapi-krb5-2 amd64 1.11.3+dfsg-3ubuntu2 [133 kB] Get:67 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5-3 amd64 1.11.3+dfsg-3ubuntu2 [355 kB] Get:68 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5support0 amd64 1.11.3+dfsg-3ubuntu2 [33.5 kB] Get:69 http://ftpmaster.internal/ubuntu/ trusty/main libhcrypto4-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [103 kB] Get:70 http://ftpmaster.internal/ubuntu/ trusty/main libheimbase1-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [32.4 kB] Get:71 http://ftpmaster.internal/ubuntu/ trusty/main libwind0-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [77.5 kB] Get:72 http://ftpmaster.internal/ubuntu/ trusty/main libhx509-5-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [125 kB] Get:73 http://ftpmaster.internal/ubuntu/ trusty/main libkrb5-26-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [230 kB] Get:74 http://ftpmaster.internal/ubuntu/ trusty/main libheimntlm0-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [15.8 kB] Get:75 http://ftpmaster.internal/ubuntu/ trusty/main libgssapi3-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [108 kB] Get:76 http://ftpmaster.internal/ubuntu/ trusty/main libsasl2-modules-db amd64 2.1.25.dfsg1-17build1 [14.9 kB] Get:77 http://ftpmaster.internal/ubuntu/ trusty/main libsasl2-2 amd64 2.1.25.dfsg1-17build1 [56.5 kB] Get:78 http://ftpmaster.internal/ubuntu/ trusty/main libldap-2.4-2 amd64 2.4.31-1+nmu2ubuntu5 [186 kB] Get:79 http://ftpmaster.internal/ubuntu/ trusty/main libcurl3-gnutls amd64 7.33.0-1ubuntu1 [190 kB] Get:80 http://ftpmaster.internal/ubuntu/ trusty/main libprocps0 amd64 1:3.3.3-2ubuntu8 [35.9 kB] Get:81 http://ftpmaster.internal/ubuntu/ trusty/main libpam-runtime all 1.1.3-10ubuntu1 [40.9 kB] Get:82 http://ftpmaster.internal/ubuntu/ trusty/main adduser all 3.113+nmu3ubuntu3 [169 kB] Get:83 http://ftpmaster.internal/ubuntu/ trusty/main busybox-initramfs amd64 1:1.21.0-1ubuntu1 [185 kB] Get:84 http://ftpmaster.internal/ubuntu/ trusty/main iproute2 amd64 3.11.0-1 [532 kB] Get:85 http://ftpmaster.internal/ubuntu/ trusty/main ifupdown amd64 0.7.46.1ubuntu1 [58.1 kB] Get:86 http://ftpmaster.internal/ubuntu/ trusty/main initramfs-tools all 0.103ubuntu2 [49.2 kB] Get:87 http://ftpmaster.internal/ubuntu/ trusty/main initramfs-tools-bin amd64 0.103ubuntu2 [9950 B] Get:88 http://ftpmaster.internal/ubuntu/ trusty/main libjson0 amd64 0.11-3ubuntu1 [1018 B] Get:89 http://ftpmaster.internal/ubuntu/ trusty-proposed/main upstart amd64 1.11-0ubuntu1 [630 kB] Get:90 http://ftpmaster.internal/ubuntu/ trusty/main apt-transport-https amd64 0.9.9.1~ubuntu4 [16.6 kB] Get:91 http://ftpmaster.internal/ubuntu/ trusty/main libsasl2-modules amd64 2.1.25.dfsg1-17build1 [64.3 kB] Get:92 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dpkg-dev all 1.17.1ubuntu1 [726 kB] Get:93 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libdpkg-perl all 1.17.1ubuntu1 [195 kB] Get:94 http://ftpmaster.internal/ubuntu/ trusty/main patch amd64 2.7.1-4 [93.8 kB] Get:95 http://ftpmaster.internal/ubuntu/ trusty/main iproute all 1:3.11.0-1 [2324 B] Get:96 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev amd64 3.12.0-2.7 [956 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.4 MB in 3s (17.9 MB/s) (Reading database ... 12079 files and directories currently installed.) Preparing to replace base-files 6.12ubuntu4 (using .../base-files_6.12ubuntu5_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (6.12ubuntu5) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... (Reading database ... 12079 files and directories currently installed.) Preparing to replace coreutils 8.20-3ubuntu5 (using .../coreutils_8.21-1ubuntu3_amd64.deb) ... Unpacking replacement coreutils ... Setting up coreutils (8.21-1ubuntu3) ... (Reading database ... 12081 files and directories currently installed.) Preparing to replace diffutils 1:3.2-8 (using .../diffutils_1%3a3.3-1_amd64.deb) ... Unpacking replacement diffutils ... Setting up diffutils (1:3.3-1) ... (Reading database ... 12081 files and directories currently installed.) Preparing to replace dpkg 1.16.12ubuntu1 (using .../dpkg_1.17.1ubuntu1_amd64.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.17.1ubuntu1) ... (Reading database ... 12064 files and directories currently installed.) Preparing to replace grep 2.14-3 (using .../archives/grep_2.14-4_amd64.deb) ... Unpacking replacement grep ... Setting up grep (2.14-4) ... Selecting previously unselected package libdb5.3:amd64. (Reading database ... 12064 files and directories currently installed.) Unpacking libdb5.3:amd64 (from .../libdb5.3_5.3.28-3_amd64.deb) ... Setting up libdb5.3:amd64 (5.3.28-3) ... Processing triggers for libc-bin ... (Reading database ... 12070 files and directories currently installed.) Preparing to replace perl 5.14.2-21build1 (using .../perl_5.18.1-4build1_amd64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-21build1 (using .../perl-base_5.18.1-4build1_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.18.1-4build1) ... (Reading database ... 11972 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-21build1 (using .../perl-modules_5.18.1-4build1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace bzip2 1.0.6-4 (using .../bzip2_1.0.6-5_amd64.deb) ... Unpacking replacement bzip2 ... Preparing to replace libbz2-1.0:amd64 1.0.6-4 (using .../libbz2-1.0_1.0.6-5_amd64.deb) ... Unpacking replacement libbz2-1.0:amd64 ... Setting up libbz2-1.0:amd64 (1.0.6-5) ... Processing triggers for libc-bin ... (Reading database ... 12009 files and directories currently installed.) Preparing to replace sed 4.2.2-1ubuntu1 (using .../sed_4.2.2-2ubuntu1_amd64.deb) ... Unpacking replacement sed ... Setting up sed (4.2.2-2ubuntu1) ... (Reading database ... 12009 files and directories currently installed.) Preparing to replace tar 1.26+dfsg-8 (using .../archives/tar_1.27-3_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.27-3) ... (Reading database ... 12010 files and directories currently installed.) Preparing to replace libitm1:amd64 4.8.1-10ubuntu8 (using .../libitm1_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libitm1:amd64 ... Preparing to replace libgomp1:amd64 4.8.1-10ubuntu8 (using .../libgomp1_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libgomp1:amd64 ... Preparing to replace libasan0:amd64 4.8.1-10ubuntu8 (using .../libasan0_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libasan0:amd64 ... Preparing to replace gcc-4.8-base:amd64 4.8.1-10ubuntu8 (using .../gcc-4.8-base_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.8-base:amd64 ... Setting up gcc-4.8-base:amd64 (4.8.2-4ubuntu1) ... (Reading database ... 12010 files and directories currently installed.) Preparing to replace libgcc1:amd64 1:4.8.1-10ubuntu8 (using .../libgcc1_1%3a4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libgcc1:amd64 ... Setting up libgcc1:amd64 (1:4.8.2-4ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 12010 files and directories currently installed.) Preparing to replace libatomic1:amd64 4.8.1-10ubuntu8 (using .../libatomic1_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libatomic1:amd64 ... Preparing to replace libtsan0:amd64 4.8.1-10ubuntu8 (using .../libtsan0_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libtsan0:amd64 ... Preparing to replace libquadmath0:amd64 4.8.1-10ubuntu8 (using .../libquadmath0_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libquadmath0:amd64 ... Preparing to replace libmpfr4:amd64 3.1.1-2 (using .../libmpfr4_3.1.2-1_amd64.deb) ... Unpacking replacement libmpfr4:amd64 ... Preparing to replace cpp-4.8 4.8.1-10ubuntu8 (using .../cpp-4.8_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace binutils 2.23.52.20130913-0ubuntu1 (using .../binutils_2.23.90.20131116-1ubuntu1_amd64.deb) ... Unpacking replacement binutils ... 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Preparing to replace procps 1:3.3.3-2ubuntu7 (using .../procps_1%3a3.3.8-2ubuntu1_amd64.deb) ... invoke-rc.d: policy-rc.d denied execution of stop. Unpacking replacement procps ... Preparing to replace udev 204-0ubuntu18 (using .../udev_204-5ubuntu6_amd64.deb) ... Adding 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace libudev1:amd64 204-0ubuntu18 (using .../libudev1_204-5ubuntu6_amd64.deb) ... Unpacking replacement libudev1:amd64 ... Preparing to replace kmod 9-3ubuntu1 (using .../kmod_15-0ubuntu2_amd64.deb) ... Unpacking replacement kmod ... Preparing to replace module-init-tools 9-3ubuntu1 (using .../module-init-tools_15-0ubuntu2_all.deb) ... Unpacking replacement module-init-tools ... Preparing to replace libroken18-heimdal:amd64 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libroken18-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_amd64.deb) ... Unpacking replacement libroken18-heimdal:amd64 ... 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Preparing to replace libkrb5-26-heimdal:amd64 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libkrb5-26-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_amd64.deb) ... Unpacking replacement libkrb5-26-heimdal:amd64 ... Preparing to replace libheimntlm0-heimdal:amd64 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libheimntlm0-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_amd64.deb) ... Unpacking replacement libheimntlm0-heimdal:amd64 ... Preparing to replace libgssapi3-heimdal:amd64 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libgssapi3-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_amd64.deb) ... Unpacking replacement libgssapi3-heimdal:amd64 ... Preparing to replace libsasl2-modules-db:amd64 2.1.25.dfsg1-17 (using .../libsasl2-modules-db_2.1.25.dfsg1-17build1_amd64.deb) ... Unpacking replacement libsasl2-modules-db:amd64 ... Preparing to replace libsasl2-2:amd64 2.1.25.dfsg1-17 (using .../libsasl2-2_2.1.25.dfsg1-17build1_amd64.deb) ... Unpacking replacement libsasl2-2:amd64 ... Preparing to replace libldap-2.4-2:amd64 2.4.31-1+nmu2ubuntu3 (using .../libldap-2.4-2_2.4.31-1+nmu2ubuntu5_amd64.deb) ... Unpacking replacement libldap-2.4-2:amd64 ... Preparing to replace libcurl3-gnutls:amd64 7.32.0-1ubuntu1 (using .../libcurl3-gnutls_7.33.0-1ubuntu1_amd64.deb) ... Unpacking replacement libcurl3-gnutls:amd64 ... Preparing to replace libprocps0:amd64 1:3.3.3-2ubuntu7 (using .../libprocps0_1%3a3.3.3-2ubuntu8_amd64.deb) ... Unpacking replacement libprocps0:amd64 ... Preparing to replace libpam-runtime 1.1.3-8ubuntu3 (using .../libpam-runtime_1.1.3-10ubuntu1_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.3-10ubuntu1) ... (Reading database ... 12030 files and directories currently installed.) Preparing to replace adduser 3.113+nmu3ubuntu2 (using .../adduser_3.113+nmu3ubuntu3_all.deb) ... Unpacking replacement adduser ... 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Setting up bzip2 (1.0.6-5) ... Setting up libitm1:amd64 (4.8.2-4ubuntu1) ... Setting up libgomp1:amd64 (4.8.2-4ubuntu1) ... Setting up libasan0:amd64 (4.8.2-4ubuntu1) ... Setting up libatomic1:amd64 (4.8.2-4ubuntu1) ... Setting up libtsan0:amd64 (4.8.2-4ubuntu1) ... Setting up libquadmath0:amd64 (4.8.2-4ubuntu1) ... Setting up libgmp10:amd64 (2:5.1.2+dfsg-3ubuntu1) ... Setting up libmpfr4:amd64 (3.1.2-1) ... Setting up libisl10:amd64 (0.12.1-1) ... Setting up libcloog-isl4:amd64 (0.18.1-1) ... Setting up cpp-4.8 (4.8.2-4ubuntu1) ... Setting up binutils (2.23.90.20131116-1ubuntu1) ... Setting up libgcc-4.8-dev:amd64 (4.8.2-4ubuntu1) ... Setting up libstdc++-4.8-dev:amd64 (4.8.2-4ubuntu1) ... Setting up gcc-4.8 (4.8.2-4ubuntu1) ... Setting up g++-4.8 (4.8.2-4ubuntu1) ... Setting up libffi6:amd64 (3.0.13-4) ... Setting up libp11-kit0:amd64 (0.20.1-2ubuntu1) ... Setting up libsqlite3-0:amd64 (3.8.1-1ubuntu1) ... Setting up libdbus-1-3:amd64 (1.6.18-0ubuntu1) ... Setting up libdrm2:amd64 (2.4.46-4) ... Setting up libjson-c2:amd64 (0.11-3ubuntu1) ... Setting up libkmod2:amd64 (15-0ubuntu2) ... Setting up libnih1:amd64 (1.0.3-4ubuntu24) ... Setting up libnih-dbus1:amd64 (1.0.3-4ubuntu24) ... Setting up libpng12-0:amd64 (1.2.49-5ubuntu1) ... Setting up libprocps1:amd64 (1:3.3.8-2ubuntu1) ... Setting up procps (1:3.3.8-2ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Installing new version of config file /etc/init.d/procps ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libudev1:amd64 (204-5ubuntu6) ... Setting up udev (204-5ubuntu6) ... Installing new version of config file /etc/udev/udev.conf ... Installing new version of config file /etc/init/udevmonitor.conf ... Installing new version of config file /etc/init.d/udev ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up kmod (15-0ubuntu2) ... Setting up module-init-tools (15-0ubuntu2) ... Setting up libroken18-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libasn1-8-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libkeyutils1:amd64 (1.5.6-1) ... Setting up libkrb5support0:amd64 (1.11.3+dfsg-3ubuntu2) ... Setting up libk5crypto3:amd64 (1.11.3+dfsg-3ubuntu2) ... Setting up libkrb5-3:amd64 (1.11.3+dfsg-3ubuntu2) ... Setting up libgssapi-krb5-2:amd64 (1.11.3+dfsg-3ubuntu2) ... Setting up libhcrypto4-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libheimbase1-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libwind0-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libhx509-5-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libkrb5-26-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libheimntlm0-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libgssapi3-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libsasl2-modules-db:amd64 (2.1.25.dfsg1-17build1) ... Setting up libsasl2-2:amd64 (2.1.25.dfsg1-17build1) ... Setting up libldap-2.4-2:amd64 (2.4.31-1+nmu2ubuntu5) ... Setting up libcurl3-gnutls:amd64 (7.33.0-1ubuntu1) ... Setting up libprocps0:amd64 (1:3.3.3-2ubuntu8) ... Setting up adduser (3.113+nmu3ubuntu3) ... Setting up busybox-initramfs (1:1.21.0-1ubuntu1) ... Setting up iproute2 (3.11.0-1) ... Setting up ifupdown (0.7.46.1ubuntu1) ... Installing new version of config file /etc/init.d/networking ... Setting up initramfs-tools-bin (0.103ubuntu2) ... Setting up initramfs-tools (0.103ubuntu2) ... update-initramfs: deferring update (trigger activated) Setting up libjson0:amd64 (0.11-3ubuntu1) ... Setting up upstart (1.11-0ubuntu1) ... Setting up apt-transport-https (0.9.9.1~ubuntu4) ... Setting up libsasl2-modules:amd64 (2.1.25.dfsg1-17build1) ... Setting up patch (2.7.1-4) ... Setting up iproute (1:3.11.0-1) ... Setting up linux-libc-dev:amd64 (3.12.0-2.7) ... Setting up perl-modules (5.18.1-4build1) ... Setting up perl (5.18.1-4build1) ... Setting up libdpkg-perl (1.17.1ubuntu1) ... Setting up dpkg-dev (1.17.1ubuntu1) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5239646', 'amd64', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'adun.app_0.81-6.dsc'] Initiating build PACKAGEBUILD-5239646 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Automatic build of adun.app_0.81-6 on allspice by sbuild/amd64 1.170.5 Build started at 20131117-1710 ****************************************************************************** adun.app_0.81-6.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), gnustep-make, libgnustep-gui-dev, libgsl0-dev, imagemagick Checking for already installed source dependencies... debhelper: missing gnustep-make: missing libgnustep-gui-dev: missing libgsl0-dev: missing imagemagick: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper gnustep-make libgnustep-gui-dev libgsl0-dev imagemagick Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps0 Use 'apt-get autoremove' to remove it. The following extra packages will be installed: apparmor-easyprof autotools-dev bsdmainutils dh-apparmor dh-python file fontconfig-config fonts-dejavu-core gettext gettext-base gnustep-base-common gnustep-base-runtime gnustep-common gnustep-gui-common gnustep-gui-runtime gobjc gobjc-4.8 groff-base hicolor-icon-theme imagemagick-common intltool-debian libao-common libao4 libasound2 libasound2-data libaspell15 libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libcroco3 libcups2 libexpat1 libfftw3-double3 libflac8 libflite1 libfontconfig1 libfreetype6 libgif4 libglib2.0-0 libgnustep-base-dev libgnustep-base1.24 libgnustep-gui0.22 libgsl0ldbl libicu48 libjasper1 libjbig0 libjpeg-turbo8 libjpeg8 liblcms2-2 liblqr-1-0 libltdl7 libmagic1 libmagickcore5 libmagickwand5 libobjc-4.8-dev libobjc4 libogg0 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsndfile1 libtiff5 libunistring0 libvorbis0a libvorbisenc2 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxslt1.1 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal sgml-base ttf-dejavu-core ucf xml-core Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc gnustep-base-doc gnustep-make-doc gobjc-multilib gobjc-4.8-multilib gcc-4.8-doc libobjc4-dbg groff imagemagick-doc autotrace cups-bsd lpr lprng enscript ffmpeg gimp gnuplot grads hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig xdg-utils ufraw-batch libaudio2 libesd0 libesd-alsa0 libpulse0 libasound2-plugins alsa-utils aspell cups-common libfftw3-bin libfftw3-dev alsa-base gnustep-gui-doc gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html libjasper-runtime liblcms2-utils less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support sgml-base-doc Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libmagickcore5-extra ghostscript netpbm aspell-en aspell-dictionary aspell6a-dictionary libglib2.0-data shared-mime-info gsfonts libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof autotools-dev bsdmainutils debhelper dh-apparmor dh-python file fontconfig-config fonts-dejavu-core gettext gettext-base gnustep-base-common gnustep-base-runtime gnustep-common gnustep-gui-common gnustep-gui-runtime gnustep-make gobjc gobjc-4.8 groff-base hicolor-icon-theme imagemagick imagemagick-common intltool-debian libao-common libao4 libasound2 libasound2-data libaspell15 libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libcroco3 libcups2 libexpat1 libfftw3-double3 libflac8 libflite1 libfontconfig1 libfreetype6 libgif4 libglib2.0-0 libgnustep-base-dev libgnustep-base1.24 libgnustep-gui-dev libgnustep-gui0.22 libgsl0-dev libgsl0ldbl libicu48 libjasper1 libjbig0 libjpeg-turbo8 libjpeg8 liblcms2-2 liblqr-1-0 libltdl7 libmagic1 libmagickcore5 libmagickwand5 libobjc-4.8-dev libobjc4 libogg0 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsndfile1 libtiff5 libunistring0 libvorbis0a libvorbisenc2 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxslt1.1 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal sgml-base ttf-dejavu-core ucf xml-core 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. Need to get 57.5 MB of archives. After this operation, 189 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libmagic1 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 groff-base bsdmainutils man-db sgml-base imagemagick-common libao-common libao4 libasound2-data libasound2 libavahi-common-data libavahi-common3 libavahi-client3 libcroco3 libcups2 libfftw3-double3 libogg0 libflac8 libfreetype6 ucf fonts-dejavu-core ttf-dejavu-core fontconfig-config libfontconfig1 libgif4 libicu48 libjpeg-turbo8 libjpeg8 libjasper1 liblcms2-2 liblqr-1-0 libltdl7 libjbig0 libtiff5 libmagickcore5 libmagickwand5 libobjc4 libvorbis0a libvorbisenc2 libsndfile1 libunistring0 libxslt1.1 libflite1 python3.3 python3-minimal libpython3-stdlib python3 dh-python file gettext-base xml-core autotools-dev gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper gnustep-common gnustep-base-common libgnustep-base1.24 gnustep-base-runtime gnustep-gui-common libaspell15 libgnustep-gui0.22 gnustep-gui-runtime libobjc-4.8-dev gobjc-4.8 gobjc gnustep-make hicolor-icon-theme imagemagick libgnustep-base-dev libgnustep-gui-dev libgsl0ldbl libgsl0-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 amd64 2.1.0-4 [129 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 amd64 5.11-2ubuntu4 [170 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal amd64 3.3.2-7ubuntu4 [616 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib amd64 3.3.2-7ubuntu4 [2687 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal amd64 3.3.2-7ubuntu4 [1757 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 amd64 0.18.3.1-1ubuntu1 [7244 B] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 amd64 2.38.1-1 [1015 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 amd64 1.2.4-1 [27.2 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libxau6 amd64 1:1.0.8-1 [8376 B] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libxdmcp6 amd64 1:1.1.1-1 [12.8 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libxcb1 amd64 1.9.1-3ubuntu1 [44.6 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libx11-data all 2:1.6.2-1ubuntu1 [180 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libx11-6 amd64 2:1.6.2-1ubuntu1 [766 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libxext6 amd64 2:1.3.2-1 [33.9 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 amd64 2.9.1+dfsg1-3ubuntu2 [693 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main groff-base amd64 1.22.2-3 [719 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils amd64 9.0.5ubuntu1 [203 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main man-db amd64 2.6.5-2 [710 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main sgml-base all 1.26+nmu4ubuntu1 [12.5 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main imagemagick-common all 8:6.7.7.10-6ubuntu1 [42.7 kB] Get:22 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http://ftpmaster.internal/ubuntu/ trusty/main libogg0 amd64 1.3.1-1 [19.8 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main libflac8 amd64 1.3.0-2 [94.5 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main libfreetype6 amd64 2.5.0.1-0ubuntu2 [354 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main ucf all 3.0027+nmu1 [56.3 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main fonts-dejavu-core all 2.33+svn2514-3ubuntu1 [1019 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main ttf-dejavu-core all 2.33+svn2514-3ubuntu1 [2964 B] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main fontconfig-config all 2.11.0-0ubuntu1 [51.7 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main libfontconfig1 amd64 2.11.0-0ubuntu1 [143 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main libgif4 amd64 4.1.6-10ubuntu1 [31.2 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main libicu48 amd64 4.8.1.1-13+nmu1ubuntu1 [4725 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg-turbo8 amd64 1.3.0-0ubuntu1 [124 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main libjasper1 amd64 1.900.1-14 [154 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty/main liblcms2-2 amd64 2.5-0ubuntu1 [159 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty/main liblqr-1-0 amd64 0.4.1-2 [28.6 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/main libltdl7 amd64 2.4.2-1.3ubuntu1 [38.4 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main libjbig0 amd64 2.0-2ubuntu1 [28.6 kB] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main libtiff5 amd64 4.0.3-5ubuntu1 [171 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main libmagickcore5 amd64 8:6.7.7.10-6ubuntu1 [1997 kB] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main libmagickwand5 amd64 8:6.7.7.10-6ubuntu1 [366 kB] Get:52 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libobjc4 amd64 4.8.2-4ubuntu1 [161 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trusty-proposed/main dh-python all 1.20131021-1ubuntu2 [60.9 kB] Get:64 http://ftpmaster.internal/ubuntu/ trusty/main file amd64 5.11-2ubuntu4 [18.4 kB] Get:65 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base amd64 0.18.3.1-1ubuntu1 [78.9 kB] Get:66 http://ftpmaster.internal/ubuntu/ trusty/main xml-core all 0.13+nmu2 [23.3 kB] Get:67 http://ftpmaster.internal/ubuntu/ trusty/main autotools-dev all 20130810.1 [44.3 kB] Get:68 http://ftpmaster.internal/ubuntu/ trusty/main gettext amd64 0.18.3.1-1ubuntu1 [1033 kB] Get:69 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:70 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:71 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu34 [23.3 kB] Get:72 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu34 [7772 B] Get:73 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20130921ubuntu1 [635 kB] Get:74 http://ftpmaster.internal/ubuntu/ trusty/universe gnustep-common amd64 2.6.2-2.1ubuntu1 [51.0 kB] Get:75 http://ftpmaster.internal/ubuntu/ trusty/universe gnustep-base-common all 1.24.0-1ubuntu1 [71.4 kB] Get:76 http://ftpmaster.internal/ubuntu/ trusty/universe libgnustep-base1.24 amd64 1.24.0-1ubuntu1 [1584 kB] Get:77 http://ftpmaster.internal/ubuntu/ trusty/universe gnustep-base-runtime amd64 1.24.0-1ubuntu1 [232 kB] Get:78 http://ftpmaster.internal/ubuntu/ trusty/universe gnustep-gui-common all 0.22.0-1ubuntu1 [705 kB] Get:79 http://ftpmaster.internal/ubuntu/ trusty/main libaspell15 amd64 0.60.7~20110707-1build1 [640 kB] Get:80 http://ftpmaster.internal/ubuntu/ trusty/universe libgnustep-gui0.22 amd64 0.22.0-1ubuntu1 [1817 kB] Get:81 http://ftpmaster.internal/ubuntu/ trusty/universe gnustep-gui-runtime amd64 0.22.0-1ubuntu1 [226 kB] Get:82 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libobjc-4.8-dev amd64 4.8.2-4ubuntu1 [776 kB] Get:83 http://ftpmaster.internal/ubuntu/ trusty-proposed/main gobjc-4.8 amd64 4.8.2-4ubuntu1 [5601 kB] Get:84 http://ftpmaster.internal/ubuntu/ trusty/main gobjc amd64 4:4.8.1-2ubuntu3 [892 B] Get:85 http://ftpmaster.internal/ubuntu/ trusty/universe gnustep-make all 2.6.2-2.1ubuntu1 [150 kB] Get:86 http://ftpmaster.internal/ubuntu/ trusty/main hicolor-icon-theme all 0.12-1ubuntu2 [10.2 kB] Get:87 http://ftpmaster.internal/ubuntu/ trusty/main imagemagick amd64 8:6.7.7.10-6ubuntu1 [194 kB] Get:88 http://ftpmaster.internal/ubuntu/ trusty/universe libgnustep-base-dev amd64 1.24.0-1ubuntu1 [2477 kB] Get:89 http://ftpmaster.internal/ubuntu/ trusty/universe libgnustep-gui-dev amd64 0.22.0-1ubuntu1 [2904 kB] Get:90 http://ftpmaster.internal/ubuntu/ trusty/main libgsl0ldbl amd64 1.16+dfsg-1 [1127 kB] Get:91 http://ftpmaster.internal/ubuntu/ trusty/main libgsl0-dev amd64 1.16+dfsg-1 [1443 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.5 MB in 3s (17.1 MB/s) 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Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:amd64 (3.3.2-7ubuntu4) ... Setting up python3.3-minimal (3.3.2-7ubuntu4) ... Setting up libasprintf0c2:amd64 (0.18.3.1-1ubuntu1) ... Setting up libglib2.0-0:amd64 (2.38.1-1) ... No schema files found: doing nothing. Setting up libpipeline1:amd64 (1.2.4-1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.9.1-3ubuntu1) ... Setting up libx11-data (2:1.6.2-1ubuntu1) ... Setting up libx11-6:amd64 (2:1.6.2-1ubuntu1) ... Setting up libxext6:amd64 (2:1.3.2-1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-3ubuntu2) ... Setting up groff-base (1.22.2-3) ... 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Setting up imagemagick (8:6.7.7.10-6ubuntu1) ... update-alternatives: using /usr/bin/compare.im6 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/animate.im6 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/convert.im6 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/composite.im6 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/conjure.im6 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/import.im6 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/identify.im6 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/stream.im6 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/display.im6 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/montage.im6 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/mogrify.im6 to provide /usr/bin/mogrify (mogrify) in auto mode Setting up libgsl0ldbl (1.16+dfsg-1) ... 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Toolchain package versions: libc6-dev_2.17-93ubuntu4 make_3.81-8.2ubuntu3 dpkg-dev_1.17.1ubuntu1 gcc-4.8_4.8.2-4ubuntu1 g++-4.8_4.8.2-4ubuntu1 binutils_2.23.90.20131116-1ubuntu1 libstdc++-4.8-dev_4.8.2-4ubuntu1 libstdc++6_4.8.2-4ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Sat Nov 16 20:40:58 2013 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./adun.app_0.81-6.dsc dpkg-source: info: extracting adun.app in adun.app-0.81 dpkg-source: info: unpacking adun.app_0.81.orig.tar.gz dpkg-source: info: unpacking adun.app_0.81-6.debian.tar.gz dpkg-source: info: applying 05_no-plugin-script.patch dpkg-source: info: applying 15_link-properly.patch dpkg-source: info: applying 20_paths.patch dpkg-source: info: applying fix-implicit-pointer.patch dpkg-buildpackage: source package adun.app dpkg-buildpackage: source version 0.81-6 dpkg-buildpackage: source distribution unstable dpkg-source --before-build adun.app-0.81 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/adun.app-0.81' /usr/bin/make distclean This is gnustep-make 2.6.2. Type 'make print-gnustep-make-help' for help. make[2]: Entering directory `/build/buildd/adun.app-0.81' rm -rf ./*~ ./obj Making clean in Kernel/ ... rm -rf ./*~ ./obj Making clean in Base ... rm -rf ./*~ ./obj Making clean in AdunKernel ... rm -rf ./*~ ./obj Making clean in subprojects of framework AdunKernel... rm -rf ./*~ ./obj rm -rf ./*~ ./obj Making clean in subprojects of subproject CoreAdditions... rm -rf ./*~ ./obj Making clean for framework AdunKernel... rm -rf ./Resources Making clean in MolTalk/ ... rm -rf ./*~ ./obj Making clean for framework MolTalk... Making clean in UL/ ... rm -rf ./*~ ./obj Making clean in XMLLib ... rm -rf ./*~ ./obj Making clean in ULFramework ... rm -rf ./*~ ./obj Making clean for framework ULFramework... Making clean in AdunServer ... rm -rf ./*~ ./obj (cd .; \ rm -rf *.app) Making distclean in Kernel/ ... Making distclean in Base ... make[4]: Nothing to be done for `distclean'. Making distclean in AdunKernel ... Making distclean in subprojects of framework AdunKernel... make[5]: Nothing to be done for `distclean'. Making distclean in subprojects of subproject CoreAdditions... make[6]: Nothing to be done for `distclean'. Making distclean for framework AdunKernel... make[5]: Nothing to be done for `internal-framework-distclean'. Making distclean in MolTalk/ ... Making distclean for framework MolTalk... make[4]: Nothing to be done for `internal-framework-distclean'. Making distclean in UL/ ... Making distclean in XMLLib ... make[4]: Nothing to be done for `distclean'. Making distclean in ULFramework ... Making distclean for framework ULFramework... make[5]: Nothing to be done for `internal-framework-distclean'. Making distclean in AdunServer ... make[4]: Nothing to be done for `distclean'. make[2]: Leaving directory `/build/buildd/adun.app-0.81' make[1]: Leaving directory `/build/buildd/adun.app-0.81' debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/adun.app-0.81' dh_clean adun.xpm make[1]: Leaving directory `/build/buildd/adun.app-0.81' debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory `/build/buildd/adun.app-0.81' MAKELEVEL=0 /usr/bin/make GNUSTEP_MAKE_PARALLEL_BUILDING=no \ messages=yes ADDITIONAL_CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security" \ LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app" \ This is gnustep-make 2.6.2. Type 'make print-gnustep-make-help' for help. make: Entering directory `/build/buildd/adun.app-0.81' Making all in Kernel/ ... make[1]: Entering directory `/build/buildd/adun.app-0.81/Kernel' Making all in Base ... make[2]: Entering directory `/build/buildd/adun.app-0.81/Kernel/Base' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for library libadun_base... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/libadun_base.obj/ gcc AdHarmonicBond.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdHarmonicBond.c.o gcc AdEnzymixBond.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdEnzymixBond.c.o gcc AdEnzymixAngle.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdEnzymixAngle.c.o gcc AdHarmonicAngle.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdHarmonicAngle.c.o gcc AdFourierTorsion.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdFourierTorsion.c.o AdFourierTorsion.c: In function 'AdFourierTorsionEnergy': AdFourierTorsion.c:45:17: warning: variable 'n1_n2' set but not used [-Wunused-but-set-variable] double n2_n1, n1_n2, period, phase, holder, tor_cnst; ^ AdFourierTorsion.c:45:10: warning: variable 'n2_n1' set but not used [-Wunused-but-set-variable] double n2_n1, n1_n2, period, phase, holder, tor_cnst; ^ AdFourierTorsion.c: In function 'AdCalculateTorsionAngle': AdFourierTorsion.c:550:16: warning: variable 'n1_n2' set but not used [-Wunused-but-set-variable] double n2_n1, n1_n2; ^ AdFourierTorsion.c:550:9: warning: variable 'n2_n1' set but not used [-Wunused-but-set-variable] double n2_n1, n1_n2; ^ gcc AdHarmonicImproperTorsion.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdHarmonicImproperTorsion.c.o AdHarmonicImproperTorsion.c: In function 'AdHarmonicImproperTorsionEnergy': AdHarmonicImproperTorsion.c:100:17: warning: variable 'n1_n2' set but not used [-Wunused-but-set-variable] double n2_n1, n1_n2, equilibriumAngle, tor_cnst; ^ AdHarmonicImproperTorsion.c:100:10: warning: variable 'n2_n1' set but not used [-Wunused-but-set-variable] double n2_n1, n1_n2, equilibriumAngle, tor_cnst; ^ gcc AdCoulombAndLennardJonesA.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdCoulombAndLennardJonesA.c.o gcc AdCoulombAndLennardJonesB.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdCoulombAndLennardJonesB.c.o gcc AdLinkedList.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdLinkedList.c.o gcc AdMatrix.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdMatrix.c.o AdMatrix.c: In function 'AdSparseMatrixRowLength': AdMatrix.c:638:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(rowIndex = matrix->no_rows - 1) ^ gcc AdGeneralizedBornFunctions.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdGeneralizedBornFunctions.c.o AdGeneralizedBornFunctions.c: In function 'AdGBEBornRadiusDerivative': AdGeneralizedBornFunctions.c:223:33: warning: unused variable 'forceMagnitude' [-Wunused-variable] double numerator, denominator, forceMagnitude, preFactor, f; ^ AdGeneralizedBornFunctions.c: In function 'AdGBEBornRadiusCoefficient': AdGeneralizedBornFunctions.c:262:33: warning: unused variable 'forceMagnitude' [-Wunused-variable] double numerator, denominator, forceMagnitude, preFactor, f; ^ gcc AdQuaternion.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdQuaternion.c.o AdQuaternion.c:24:1: warning: missing braces around initializer [-Wmissing-braces] static Vector3D x = {0.0, 1, 0, 0}; ^ AdQuaternion.c:24:1: warning: (near initialization for 'x.vector') [-Wmissing-braces] AdQuaternion.c:25:1: warning: missing braces around initializer [-Wmissing-braces] static Vector3D y = {0.0, 0, 1, 0}; ^ AdQuaternion.c:25:1: warning: (near initialization for 'y.vector') [-Wmissing-braces] AdQuaternion.c:26:1: warning: missing braces around initializer [-Wmissing-braces] static Vector3D z = {0.0, 0, 0, 1}; ^ AdQuaternion.c:26:1: warning: (near initialization for 'z.vector') [-Wmissing-braces] gcc AdQuadratureFunctions.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdQuadratureFunctions.c.o AdQuadratureFunctions.c: In function 'AdGenerateGaussLegendrePoints': AdQuadratureFunctions.c:93:18: warning: variable 'count' set but not used [-Wunused-but-set-variable] unsigned int i, count; ^ gcc AdSorter.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdSorter.c.o gcc AdVector.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdVector.c.o gcc AdVolumeFunctions.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdVolumeFunctions.c.o AdVolumeFunctions.c: In function 'AdVolumeExclusionFunction': AdVolumeFunctions.c:235:11: warning: variable 'matrix' set but not used [-Wunused-but-set-variable] double** matrix; ^ AdVolumeFunctions.c:234:43: warning: unused variable 'checkVal' [-Wunused-variable] double retVal, value, smoothingBoundary, checkVal; ^ AdVolumeFunctions.c:234:24: warning: unused variable 'smoothingBoundary' [-Wunused-variable] double retVal, value, smoothingBoundary, checkVal; ^ AdVolumeFunctions.c:233:9: warning: unused variable 'j' [-Wunused-variable] int i, j, index; ^ AdVolumeFunctions.c: In function 'AdVolumeExclusionFunction2': AdVolumeFunctions.c:310:36: warning: unused variable 'checkVal' [-Wunused-variable] double retVal, smoothingBoundary, checkVal; ^ AdVolumeFunctions.c:310:17: warning: unused variable 'smoothingBoundary' [-Wunused-variable] double retVal, smoothingBoundary, checkVal; ^ AdVolumeFunctions.c:309:9: warning: unused variable 'j' [-Wunused-variable] int i, j, index, count; ^ AdVolumeFunctions.c: In function 'AdVolumeFunctionAtomDerivative': AdVolumeFunctions.c:430:9: warning: unused variable 'value' [-Wunused-variable] double value, length, radius; ^ AdVolumeFunctions.c: In function 'AdVolumeFunctionPositionDerivative': AdVolumeFunctions.c:569:9: warning: unused variable 'value' [-Wunused-variable] double value, length, radius; ^ AdVolumeFunctions.c: In function 'AdAVEFunctionPositionDerivative': AdVolumeFunctions.c:147:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gcc AdBaseFunctions.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdBaseFunctions.c.o gcc -shared -Wl,-soname,libadun_base.so.0 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./obj/libadun_base.so.0.0.1 obj/libadun_base.obj/AdHarmonicBond.c.o obj/libadun_base.obj/AdEnzymixBond.c.o obj/libadun_base.obj/AdEnzymixAngle.c.o obj/libadun_base.obj/AdHarmonicAngle.c.o obj/libadun_base.obj/AdFourierTorsion.c.o obj/libadun_base.obj/AdHarmonicImproperTorsion.c.o obj/libadun_base.obj/AdCoulombAndLennardJonesA.c.o obj/libadun_base.obj/AdCoulombAndLennardJonesB.c.o obj/libadun_base.obj/AdLinkedList.c.o obj/libadun_base.obj/AdMatrix.c.o obj/libadun_base.obj/AdGeneralizedBornFunctions.c.o obj/libadun_base.obj/AdQuaternion.c.o obj/libadun_base.obj/AdQuadratureFunctions.c.o obj/libadun_base.obj/AdSorter.c.o obj/libadun_base.obj/AdVector.c.o obj/libadun_base.obj/AdVolumeFunctions.c.o obj/libadun_base.obj/AdBaseFunctions.c.o -L/usr/local/lib -L/usr/local/lib -L/usr/lib -lgsl -lm && (cd ./obj; rm -f libadun_base.so; if [ "libadun_base.so.0" != "libadun_base.so.0.0.1" ]; then rm -f libadun_base.so.0; ln -s libadun_base.so.0.0.1 libadun_base.so.0; fi; ln -s libadun_base.so.0 libadun_base.so; ) make[2]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/Base' Making all in AdunKernel ... make[2]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel' Making build-headers in subprojects of framework AdunKernel... make[3]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' Making build-headers for subproject Framework... /usr/share/GNUstep/Makefiles/mkinstalldirs ../AdunKernel.framework/Versions/0/Headers make[3]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' make[3]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making build-headers in subprojects of subproject CoreAdditions... make[4]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making build-headers for subproject CoreCommands... /usr/bin/install -c -p -m 644 AdStatusCommand.h ../../AdunKernel.framework/Versions/0/Headers/AdStatusCommand.h /usr/bin/install -c -p -m 644 AdEndSimulationCommand.h ../../AdunKernel.framework/Versions/0/Headers/AdEndSimulationCommand.h make[4]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making build-headers for subproject CoreAdditions... make[4]: Nothing to be done for `internal-subproject-build-headers'. make[3]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making build-headers for framework AdunKernel... /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdFrameworkFunctions.h AdunKernel.framework/Versions/0/Headers/AdFrameworkFunctions.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunDefinitions.h AdunKernel.framework/Versions/0/Headers/AdunDefinitions.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdDataSources.h AdunKernel.framework/Versions/0/Headers/AdDataSources.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdGridDelegate.h AdunKernel.framework/Versions/0/Headers/AdGridDelegate.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdServerInterface.h AdunKernel.framework/Versions/0/Headers/AdServerInterface.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdIndexSetConversions.h AdunKernel.framework/Versions/0/Headers/AdIndexSetConversions.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdMemento.h AdunKernel.framework/Versions/0/Headers/AdMemento.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdMatrixModification.h AdunKernel.framework/Versions/0/Headers/AdMatrixModification.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunTimer.h AdunKernel.framework/Versions/0/Headers/AdunTimer.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunModelObject.h AdunKernel.framework/Versions/0/Headers/AdunModelObject.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunMatrixStructureCoder.h AdunKernel.framework/Versions/0/Headers/AdunMatrixStructureCoder.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunDataMatrix.h AdunKernel.framework/Versions/0/Headers/AdunDataMatrix.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunDataSet.h AdunKernel.framework/Versions/0/Headers/AdunDataSet.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunDataSource.h AdunKernel.framework/Versions/0/Headers/AdunDataSource.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunContainerDataSource.h AdunKernel.framework/Versions/0/Headers/AdunContainerDataSource.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunElementSelection.h AdunKernel.framework/Versions/0/Headers/AdunElementSelection.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunGrid.h AdunKernel.framework/Versions/0/Headers/AdunGrid.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSphericalBox.h AdunKernel.framework/Versions/0/Headers/AdunSphericalBox.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunEllipsoidBox.h AdunKernel.framework/Versions/0/Headers/AdunEllipsoidBox.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunCuboidBox.h AdunKernel.framework/Versions/0/Headers/AdunCuboidBox.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunMoleculeCavity.h AdunKernel.framework/Versions/0/Headers/AdunMoleculeCavity.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunCellListHandler.h AdunKernel.framework/Versions/0/Headers/AdunCellListHandler.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSimpleListHandler.h AdunKernel.framework/Versions/0/Headers/AdunSimpleListHandler.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunLinkedList.h AdunKernel.framework/Versions/0/Headers/AdunLinkedList.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunListHandler.h AdunKernel.framework/Versions/0/Headers/AdunListHandler.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunDynamics.h AdunKernel.framework/Versions/0/Headers/AdunDynamics.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunInteractionSystem.h AdunKernel.framework/Versions/0/Headers/AdunInteractionSystem.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSystem.h AdunKernel.framework/Versions/0/Headers/AdunSystem.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSystemCollection.h AdunKernel.framework/Versions/0/Headers/AdunSystemCollection.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdForceFieldTerm.h AdunKernel.framework/Versions/0/Headers/AdForceFieldTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunHarmonicConstraintTerm.h AdunKernel.framework/Versions/0/Headers/AdunHarmonicConstraintTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSCAAS.h AdunKernel.framework/Versions/0/Headers/AdunSCAAS.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunNonbondedTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunPureNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunPureNonbondedTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunGRFNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunGRFNonbondedTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunShiftedNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunShiftedNonbondedTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunMultithreadedNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunMultithreadedNonbondedTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSmoothedGBTerm.h AdunKernel.framework/Versions/0/Headers/AdunSmoothedGBTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunForceField.h AdunKernel.framework/Versions/0/Headers/AdunForceField.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunMolecularMechanicsForceField.h AdunKernel.framework/Versions/0/Headers/AdunMolecularMechanicsForceField.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunEnzymixForceField.h AdunKernel.framework/Versions/0/Headers/AdunEnzymixForceField.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunAmberForceField.h AdunKernel.framework/Versions/0/Headers/AdunAmberForceField.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunCharmmForceField.h AdunKernel.framework/Versions/0/Headers/AdunCharmmForceField.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunForceFieldCollection.h AdunKernel.framework/Versions/0/Headers/AdunForceFieldCollection.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunConfigurationGenerator.h AdunKernel.framework/Versions/0/Headers/AdunConfigurationGenerator.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSimulator.h AdunKernel.framework/Versions/0/Headers/AdunSimulator.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunLangevinThermostat.h AdunKernel.framework/Versions/0/Headers/AdunLangevinThermostat.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunBerendsenThermostat.h AdunKernel.framework/Versions/0/Headers/AdunBerendsenThermostat.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunMinimiser.h AdunKernel.framework/Versions/0/Headers/AdunMinimiser.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunMemoryManager.h AdunKernel.framework/Versions/0/Headers/AdunMemoryManager.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdCoreCommand.h AdunKernel.framework/Versions/0/Headers/AdCoreCommand.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdCoreAdditions.h AdunKernel.framework/Versions/0/Headers/AdCoreAdditions.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdCommandInterface.h AdunKernel.framework/Versions/0/Headers/AdCommandInterface.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdController.h AdunKernel.framework/Versions/0/Headers/AdController.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunIOManager.h AdunKernel.framework/Versions/0/Headers/AdunIOManager.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSimulationData.h AdunKernel.framework/Versions/0/Headers/AdunSimulationData.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunTrajectory.h AdunKernel.framework/Versions/0/Headers/AdunTrajectory.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunFileSystemSimulationStorage.h AdunKernel.framework/Versions/0/Headers/AdunFileSystemSimulationStorage.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunController.h AdunKernel.framework/Versions/0/Headers/AdunController.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunTemplateProcessor.h AdunKernel.framework/Versions/0/Headers/AdunTemplateProcessor.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunCheckpointManager.h AdunKernel.framework/Versions/0/Headers/AdunCheckpointManager.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunCore.h AdunKernel.framework/Versions/0/Headers/AdunCore.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunKernel.h AdunKernel.framework/Versions/0/Headers/AdunKernel.h /usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \ touch derived_src/.stamp /usr/share/GNUstep/Makefiles/mkinstalldirs AdunKernel.framework/Versions/0/Resources cd ./AdunKernel.framework/Versions; \ rm -f Current; \ ln -s 0 Current cd ./AdunKernel.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "AdunKernel" ]; then \ rm -f ./AdunKernel; \ ln -s ../AdunKernel.framework/Headers \ ./AdunKernel; \ fi cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all in subprojects of framework AdunKernel... make[3]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for subproject Framework... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/Framework.obj/ gcc AdFrameworkFunctions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdFrameworkFunctions.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from AdFrameworkFunctions.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdFrameworkFunctions.m: In function 'AdLogMatrixRows': AdFrameworkFunctions.m:356:2: warning: comparison is always true due to limited range of data type [-Wtype-limits] if(index != NSNotFound) ^ AdFrameworkFunctions.m:362:2: warning: comparison is always true due to limited range of data type [-Wtype-limits] if(index != NSNotFound) ^ AdFrameworkFunctions.m:368:16: warning: comparison is always true due to limited range of data type [-Wtype-limits] while((index = [indexSet indexGreaterThanIndex: index]) != NSNotFound); ^ gcc AdIndexSetConversions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdIndexSetConversions.m.o AdIndexSetConversions.m: In function '-[NSIndexSet(AdIndexSetConversions) initWithCoder:]': AdIndexSetConversions.m:122:3: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] rangeArray = (NSRange*)[decoder decodeBytesForKey:@"" returnedLength: &length]; ^ AdIndexSetConversions.m:122:3: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdIndexSetConversions.m:127:3: warning: passing argument 1 of 'decodeBytesWithReturnedLength:' from incompatible pointer type [enabled by default] rangeArray = (NSRange*)[decoder decodeBytesWithReturnedLength: &length]; ^ AdIndexSetConversions.m:127:3: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' gcc AdunTimer.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunTimer.m.o gcc AdunModelObject.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunModelObject.m.o AdunModelObject.m: In function '-[AdModelObject addInputReferenceToObjectWithID:name:ofType:inSchema:ofDatabase:]': AdunModelObject.m:232:1: warning: unused parameter 'objectName' [-Wunused-parameter] { ^ AdunModelObject.m:232:1: warning: unused parameter 'schema' [-Wunused-parameter] AdunModelObject.m:232:1: warning: unused parameter 'databaseName' [-Wunused-parameter] AdunModelObject.m: In function '-[AdModelObject addOutputReferenceToObjectWithID:name:ofType:inSchema:ofDatabase:]': AdunModelObject.m:324:1: warning: unused parameter 'objectName' [-Wunused-parameter] { ^ AdunModelObject.m:324:1: warning: unused parameter 'schema' [-Wunused-parameter] AdunModelObject.m:324:1: warning: unused parameter 'databaseName' [-Wunused-parameter] gcc AdunMatrixStructureCoder.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunMatrixStructureCoder.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from AdunMatrixStructureCoder.m:26: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ gcc AdunDataMatrix.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunDataMatrix.m.o AdunDataMatrix.m: In function '-[NSArray(AdKernelAdditions) subarrayFromElementSelection:]': AdunDataMatrix.m:114:2: warning: comparison is always true due to limited range of data type [-Wtype-limits] if(index != NSNotFound) ^ AdunDataMatrix.m:126:4: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] inIndexRange: NULL]; ^ AdunDataMatrix.m:126:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m: In function '+[AdDataMatrix initialize]': AdunDataMatrix.m:376:5: warning: @interface of class 'NSDoubleNumber' not found [enabled by default] [NSDoubleNumber class], @"double", ^ AdunDataMatrix.m:377:5: warning: @interface of class 'NSIntNumber' not found [enabled by default] [NSIntNumber class], @"int", nil]; ^ AdunDataMatrix.m: In function '-[AdDataMatrix valueForKey:]': AdunDataMatrix.m:761:2: warning: comparison is always true due to limited range of data type [-Wtype-limits] if(index != NSNotFound) ^ AdunDataMatrix.m: In function '-[AdDataMatrix elementAtRow:ofColumnWithHeader:]': AdunDataMatrix.m:853:18: warning: comparison is always false due to limited range of data type [-Wtype-limits] if((columnIndex = [columnHeaders indexOfObject: columnHeader]) == NSNotFound) ^ AdunDataMatrix.m: In function '-[AdDataMatrix columnWithHeader:]': AdunDataMatrix.m:879:18: warning: comparison is always false due to limited range of data type [-Wtype-limits] if((columnIndex = [columnHeaders indexOfObject: columnHeader]) == NSNotFound) ^ AdunDataMatrix.m: In function '-[AdDataMatrix addColumnWithHeader:toArray:]': AdunDataMatrix.m:927:18: warning: comparison is always false due to limited range of data type [-Wtype-limits] if((columnIndex = [columnHeaders indexOfObject: columnHeader]) == NSNotFound) ^ AdunDataMatrix.m: In function '-[AdDataMatrix dataTypeForColumnWithHeader:]': AdunDataMatrix.m:1029:18: warning: comparison is always false due to limited range of data type [-Wtype-limits] if((columnIndex = [columnHeaders indexOfObject: columnHeader]) == NSNotFound) ^ AdunDataMatrix.m: In function '-[AdDataMatrix submatrixFromRowSelection:]': AdunDataMatrix.m:1154:2: warning: comparison is always true due to limited range of data type [-Wtype-limits] if(index != NSNotFound) ^ AdunDataMatrix.m:1168:4: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] inIndexRange: NULL]; ^ AdunDataMatrix.m:1168:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m: In function '-[AdDataMatrix submatrixFromColumnSelection:]': AdunDataMatrix.m:1204:2: warning: comparison is always true due to limited range of data type [-Wtype-limits] if(index != NSNotFound) ^ AdunDataMatrix.m: In function '-[AdDataMatrix _initWithCoderPre0:7:]': AdunDataMatrix.m:1279:6: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] returnedLength: &length]; ^ AdunDataMatrix.m:1279:6: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m:1264:6: warning: variable 'matrixElements' set but not used [-Wunused-but-set-variable] int matrixElements; ^ AdunDataMatrix.m: In function '-[AdDataMatrix initWithCoder:]': AdunDataMatrix.m:1570:5: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] returnedLength: &length]; ^ AdunDataMatrix.m:1570:5: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m:1576:5: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] returnedLength: &length]; ^ AdunDataMatrix.m:1576:5: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m:1605:3: warning: passing argument 1 of 'decodeBytesWithReturnedLength:' from incompatible pointer type [enabled by default] bytes = (void*)[decoder decodeBytesWithReturnedLength: &length]; ^ AdunDataMatrix.m:1605:3: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m:1609:3: warning: passing argument 1 of 'decodeBytesWithReturnedLength:' from incompatible pointer type [enabled by default] bytes = (void*)[decoder decodeBytesWithReturnedLength: &length]; ^ AdunDataMatrix.m:1609:3: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m: In function '-[AdMutableDataMatrix setElementAtRow:ofColumnWithHeader:withValue:]': AdunDataMatrix.m:1987:18: warning: comparison is always false due to limited range of data type [-Wtype-limits] if((columnIndex = [columnHeaders indexOfObject: columnHeader]) == NSNotFound) ^ AdunDataMatrix.m: In function '-[AdMutableDataMatrix extendMatrixWithColumnValues:]': AdunDataMatrix.m:2145:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(key = [keyEnum nextObject]) ^ AdunDataMatrix.m:2148:3: warning: comparison is always true due to limited range of data type [-Wtype-limits] if(index != NSNotFound) ^ AdunDataMatrix.m: In function '-[AdMutableDataMatrix removeRowsWithIndexes:]': AdunDataMatrix.m:2195:4: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] inIndexRange: NULL]; ^ AdunDataMatrix.m:2195:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m:2196:2: warning: passing argument 1 of 'removeObjectsFromIndices:numIndices:' from incompatible pointer type [enabled by default] [matrix removeObjectsFromIndices: buffer numIndices: [indexSet count]]; ^ AdunDataMatrix.m:2196:2: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' gcc AdunDataSet.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunDataSet.m.o gcc AdunDataSource.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunDataSource.m.o AdunDataSource.m: In function '-[AdDataSource initWithDataSource:]': AdunDataSource.m:239:3: warning: 'AdDataSource' may not respond to '-setNonbondedPairs:' [enabled by default] [dataSource indexSetArrayForCategory: @"Nonbonded"]]; ^ AdunDataSource.m:239:3: warning: (Messages without a matching method signature [enabled by default] AdunDataSource.m:239:3: warning: will be assumed to return 'id' and accept [enabled by default] AdunDataSource.m:239:3: warning: '...' as arguments.) [enabled by default] AdunDataSource.m: In function '-[AdDataSource elementPairsNotInInteractionsOfCategory:]': AdunDataSource.m:286:1: warning: unused parameter 'aString' [-Wunused-parameter] { ^ AdunDataSource.m: In function '-[AdDataSource groupsForInteraction:containingElement:]': AdunDataSource.m:348:1: warning: unused parameter 'interaction' [-Wunused-parameter] { ^ AdunDataSource.m:348:1: warning: unused parameter 'elementIndex' [-Wunused-parameter] AdunDataSource.m: In function '-[AdDataSource constraintForInteraction:]': AdunDataSource.m:382:1: warning: unused parameter 'interaction' [-Wunused-parameter] { ^ AdunDataSource.m: In function '-[AdDataSource indexSetArrayForCategory:]': AdunDataSource.m:387:1: warning: unused parameter 'category' [-Wunused-parameter] { ^ AdunDataSource.m: In function '-[AdDataSource(AdDataSourceCodingExtensions) _decodeIndexArrayForKey:usingCoder:encodedByteOrder:]': AdunDataSource.m:521:8: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] returnedLength: &length]; ^ AdunDataSource.m:521:8: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataSource.m:525:6: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] returnedLength: &length]; ^ AdunDataSource.m:525:6: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataSource.m:530:3: warning: passing argument 1 of 'decodeBytesWithReturnedLength:' from incompatible pointer type [enabled by default] rangesPerSet = (int*)[decoder decodeBytesWithReturnedLength: &length]; ^ AdunDataSource.m:530:3: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataSource.m:532:3: warning: passing argument 1 of 'decodeBytesWithReturnedLength:' from incompatible pointer type [enabled by default] totalRangeArray = (NSRange*)[decoder decodeBytesWithReturnedLength: &length]; ^ AdunDataSource.m:532:3: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataSource.m: In function '-[AdMutableDataSource removeElements:]': AdunDataSource.m:1221:2: warning: comparison is always false due to limited range of data type [-Wtype-limits] if(index == NSNotFound) ^ AdunDataSource.m:1242:15: warning: comparison is always true due to limited range of data type [-Wtype-limits] while((index = [indexSet indexLessThanIndex: index]) != NSNotFound); ^ AdunDataSource.m: In function '-[AdMutableDataSource(BiomolecularSystemExtensions) _residueForElement:]': AdunDataSource.m:1256:16: warning: variable 'arrayEnum' set but not used [-Wunused-but-set-variable] NSEnumerator* arrayEnum; ^ gcc AdunContainerDataSource.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunContainerDataSource.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunContainerDataSource.h:32, from AdunContainerDataSource.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunContainerDataSource.m: In function '-[AdContainerDataSource(Private) _createNonbondedPairs]': AdunContainerDataSource.m:224:4: warning: comparison is always true due to limited range of data type [-Wtype-limits] while(index != NSNotFound) ^ AdunContainerDataSource.m: In function '-[AdContainerDataSource indexSetArrayForCategory:]': AdunContainerDataSource.m:726:1: warning: unused parameter 'category' [-Wunused-parameter] { ^ AdunContainerDataSource.m: At top level: AdunContainerDataSource.m:812:1: warning: incomplete implementation of class 'AdContainerDataSource' [enabled by default] @end ^ AdunContainerDataSource.m:812:1: warning: method definition for '-constraintForInteraction:' not found [enabled by default] AdunContainerDataSource.m:812:1: warning: method definition for '-groupsForInteraction:containingElement:' not found [enabled by default] AdunContainerDataSource.m:812:1: warning: method definition for '-indexesOfElementsWithValues:forProperty:' not found [enabled by default] AdunContainerDataSource.m:812:1: warning: class 'AdContainerDataSource' does not fully implement the 'AdSystemDataSource' protocol [enabled by default] AdunContainerDataSource.m: In function '-[AdContainerDataSource(AdContainerDataSourceInsertionExtensions) insertSystem:]': AdunContainerDataSource.m:870:16: warning: variable 'coordinates' set but not used [-Wunused-but-set-variable] AdDataMatrix* coordinates; ^ AdunContainerDataSource.m: In function '-[AdContainerDataSource(AdContainerDataSourceInsertionExtensions) removeSystem:]': AdunContainerDataSource.m:922:35: warning: variable 'configuration' set but not used [-Wunused-but-set-variable] AdDataMatrix* newConf, *matrix, *configuration; ^ gcc AdunElementSelection.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunElementSelection.m.o AdunElementSelection.m: In function '-[AdElementSelection setSelectionString:]': AdunElementSelection.m:173:32: warning: variable 'commaSet' set but not used [-Wunused-but-set-variable] NSCharacterSet* categorySet, *commaSet; ^ AdunElementSelection.m: In function '-[AdElementSelection _rowsInMatrix:matchingSpecifiers:categoryColumn:subcategoryColumn:restrictToRows:]': AdunElementSelection.m:347:2: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] [nonSelectedRows getIndexes: buffer maxCount: numberRows inIndexRange: NULL]; ^ AdunElementSelection.m:347:2: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunElementSelection.m:275:1: warning: unused parameter 'subcategoryColumn' [-Wunused-parameter] { ^ AdunElementSelection.m: In function '-[AdElementSelection matchingGroupsInDataSource:]': AdunElementSelection.m:373:11: warning: variable 'groupSpecifiers' set but not used [-Wunused-but-set-variable] NSArray* groupSpecifiers; ^ gcc AdunGrid.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunGrid.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunCuboidBox.h:26, from AdunGrid.m:26: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunGrid.m: In function '-[AdGrid initWithDensity:cavity:]': AdunGrid.m:216:1: warning: unused parameter 'density' [-Wunused-parameter] { ^ AdunGrid.m:216:1: warning: unused parameter 'cavity' [-Wunused-parameter] AdunGrid.m: In function '-[AdGrid initWithDivisions:cavity:]': AdunGrid.m:222:1: warning: unused parameter 'divisions' [-Wunused-parameter] { ^ AdunGrid.m:222:1: warning: unused parameter 'cavity' [-Wunused-parameter] gcc AdunSphericalBox.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSphericalBox.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunSphericalBox.h:5, from AdunSphericalBox.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ gcc AdunEllipsoidBox.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunEllipsoidBox.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunEllipsoidBox.h:5, from AdunEllipsoidBox.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ gcc AdunCuboidBox.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunCuboidBox.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunCuboidBox.h:26, from AdunCuboidBox.m:23: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ gcc AdunMoleculeCavity.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunMoleculeCavity.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from AdunMoleculeCavity.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunMoleculeCavity.m: In function '-[AdMoleculeCavity _calculateCavityExtremes]': AdunMoleculeCavity.m:63:17: warning: 'max[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] double min[3], max[3]; ^ AdunMoleculeCavity.m:63:9: warning: 'min[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] double min[3], max[3]; ^ gcc AdunCellListHandler.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunCellListHandler.m.o In file included from ../Headers/AdunKernel/AdunCellListHandler.h:34:0, from AdunCellListHandler.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunCellListHandler.m: In function '-[AdCellListHandler _handleSystemContentsChange:]': AdunCellListHandler.m:320:1: warning: unused parameter 'aNotification' [-Wunused-parameter] { ^ AdunCellListHandler.m: In function '-[AdCellListHandler createList]': AdunCellListHandler.m:391:17: warning: variable 'cell' set but not used [-Wunused-but-set-variable] int atomIndex, cell, holder; ^ gcc AdunSimpleListHandler.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSimpleListHandler.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSimpleListHandler.h:29, from AdunSimpleListHandler.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunSimpleListHandler.m: In function '-[AdSimpleListHandler _handleSystemContentsChange:]': AdunSimpleListHandler.m:93:1: warning: unused parameter 'aNotification' [-Wunused-parameter] { ^ AdunSimpleListHandler.m: In function '-[AdSimpleListHandler createList]': AdunSimpleListHandler.m:153:5: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] retVal = [indexSet getIndexes: indexBuffer maxCount: 100 inIndexRange: &indexRange]; ^ AdunSimpleListHandler.m:153:5: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' gcc AdunLinkedList.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunLinkedList.m.o In file included from ../Headers/AdunKernel/AdunLinkedList.h:29:0, from AdunLinkedList.m:23: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunLinkedList.m: In function '-[AdLinkedList _reinsertElement:]': AdunLinkedList.m:122:7: warning: variable 'firstElement' set but not used [-Wunused-but-set-variable] BOOL firstElement, lastElement; ^ gcc AdunListHandler.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunListHandler.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from AdunListHandler.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunListHandler.m: In function '-[AdListHandler initWithSystem:allowedPairs:cutoff:]': AdunListHandler.m:27:1: warning: unused parameter 'aSystem' [-Wunused-parameter] { ^ AdunListHandler.m:27:1: warning: unused parameter 'anArray' [-Wunused-parameter] AdunListHandler.m:27:1: warning: unused parameter 'aDouble' [-Wunused-parameter] AdunListHandler.m: In function '-[AdListHandler setCutoff:]': AdunListHandler.m:44:1: warning: unused parameter 'aValue' [-Wunused-parameter] { ^ AdunListHandler.m: In function '-[AdListHandler setAllowedPairs:]': AdunListHandler.m:57:1: warning: unused parameter 'anArray' [-Wunused-parameter] { ^ AdunListHandler.m: In function '-[AdListHandler setDelegate:]': AdunListHandler.m:84:1: warning: unused parameter 'delegate' [-Wunused-parameter] { ^ AdunListHandler.m: In function '-[AdListHandler setSystem:]': AdunListHandler.m:97:1: warning: unused parameter 'aSystem' [-Wunused-parameter] { ^ gcc AdunDynamics.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunDynamics.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from AdunDynamics.m:25: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunDynamics.m: In function '-[AdDynamics object:willBeginWritingToMatrix:]': AdunDynamics.m:439:1: warning: unused parameter 'object' [-Wunused-parameter] { ^ AdunDynamics.m: In function '-[AdDynamics object:didFinishWritingToMatrix:]': AdunDynamics.m:453:1: warning: unused parameter 'object' [-Wunused-parameter] { ^ gcc AdunInteractionSystem.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunInteractionSystem.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunInteractionSystem.h:28, from AdunInteractionSystem.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunInteractionSystem.m: In function '-[AdInteractionSystem indexSetArrayForCategory:]': AdunInteractionSystem.m:495:1: warning: unused parameter 'category' [-Wunused-parameter] { ^ gcc AdunSystem.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSystem.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from AdunSystem.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunSystem.m: In function '-[AdSystem validateMemento:]': AdunSystem.m:313:1: warning: unused parameter 'aMemento' [-Wunused-parameter] { ^ gcc AdunSystemCollection.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSystemCollection.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSystemCollection.h:25, from AdunSystemCollection.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ gcc AdunHarmonicConstraintTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunHarmonicConstraintTerm.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunHarmonicConstraintTerm.h:29, from AdunHarmonicConstraintTerm.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm initWithSystem:forceConstant:contrainingElementsMatchingSelectionString:]': AdunHarmonicConstraintTerm.m:48:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunHarmonicConstraintTerm.m:45:1: warning: unused parameter 'system' [-Wunused-parameter] { ^ AdunHarmonicConstraintTerm.m:45:1: warning: unused parameter 'forceConstant' [-Wunused-parameter] AdunHarmonicConstraintTerm.m:45:1: warning: unused parameter 'selectionString' [-Wunused-parameter] AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm initWithSystem:forceConstant:container:constraintType:]': AdunHarmonicConstraintTerm.m:132:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm initWithSystem:forceConstant:constrainingElements:]': AdunHarmonicConstraintTerm.m:141:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm evaluateForces]': AdunHarmonicConstraintTerm.m:179:2: warning: comparison is always true due to limited range of data type [-Wtype-limits] while(index != NSNotFound) ^ AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm evaluateEnergy]': AdunHarmonicConstraintTerm.m:209:2: warning: comparison is always true due to limited range of data type [-Wtype-limits] while(index != NSNotFound) ^ AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm setExternalForceMatrix:]': AdunHarmonicConstraintTerm.m:232:1: warning: unused parameter 'matrix' [-Wunused-parameter] { ^ AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm setSystem:]': AdunHarmonicConstraintTerm.m:247:1: warning: unused parameter 'system' [-Wunused-parameter] { ^ AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm evaluateForces]': AdunHarmonicConstraintTerm.m:192:68: warning: array subscript is above array bounds [-Warray-bounds] forceMatrix->matrix[index][i] = forceMagnitude*difference.vector[i]*rLength; ^ gcc AdunSCAAS.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSCAAS.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSCAAS.h:37, from AdunSCAAS.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunSCAAS.m: In function '-[AdSCAAS _applyPolarisationConstraint]': AdunSCAAS.m:518:35: warning: variable 'coordinates' set but not used [-Wunused-but-set-variable] double** velocities, **forces, **coordinates; ^ AdunSCAAS.m:518:11: warning: variable 'velocities' set but not used [-Wunused-but-set-variable] double** velocities, **forces, **coordinates; ^ AdunSCAAS.m: In function '-[AdSCAAS setExternalForceMatrix:]': AdunSCAAS.m:637:1: warning: unused parameter 'matrix' [-Wunused-parameter] { ^ gcc AdunNonbondedTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunNonbondedTerm.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunNonbondedTerm.h:28, from AdunNonbondedTerm.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm initWithSystem:]': AdunNonbondedTerm.m:31:1: warning: unused parameter 'system' [-Wunused-parameter] { ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm initWithSystem:cutoff:updateInterval:nonbondedPairs:externalForceMatrix:]': AdunNonbondedTerm.m:41:1: warning: unused parameter 'aSystem' [-Wunused-parameter] { ^ AdunNonbondedTerm.m:41:1: warning: unused parameter 'aDouble' [-Wunused-parameter] AdunNonbondedTerm.m:41:1: warning: unused parameter 'anInt' [-Wunused-parameter] AdunNonbondedTerm.m:41:1: warning: unused parameter 'nonbondedPairs' [-Wunused-parameter] AdunNonbondedTerm.m:41:1: warning: unused parameter 'matrix' [-Wunused-parameter] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm handlerDidUpdateList:]': AdunNonbondedTerm.m:82:1: warning: unused parameter 'handler' [-Wunused-parameter] { ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm electrostaticEnergy]': AdunNonbondedTerm.m:89:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm lennardJonesEnergy]': AdunNonbondedTerm.m:94:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm energy]': AdunNonbondedTerm.m:99:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm lennardJonesType]': AdunNonbondedTerm.m:104:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm permittivity]': AdunNonbondedTerm.m:109:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setPermittivity:]': AdunNonbondedTerm.m:112:1: warning: unused parameter 'aDouble' [-Wunused-parameter] { ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm cutoff]': AdunNonbondedTerm.m:119:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setCutoff:]': AdunNonbondedTerm.m:122:1: warning: unused parameter 'aDouble' [-Wunused-parameter] { ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm updateInterval]': AdunNonbondedTerm.m:129:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setUpdateInterval:]': AdunNonbondedTerm.m:132:1: warning: unused parameter 'anInt' [-Wunused-parameter] { ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setExternalForceMatrix:]': AdunNonbondedTerm.m:137:1: warning: unused parameter 'matrix' [-Wunused-parameter] { ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm forces]': AdunNonbondedTerm.m:144:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm usesExternalForceMatrix]': AdunNonbondedTerm.m:149:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setSystem:]': AdunNonbondedTerm.m:152:1: warning: unused parameter 'anObject' [-Wunused-parameter] { ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm system]': AdunNonbondedTerm.m:159:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm canEvaluateEnergy]': AdunNonbondedTerm.m:164:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm canEvaluateForces]': AdunNonbondedTerm.m:169:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setNonbondedPairs:]': AdunNonbondedTerm.m:172:1: warning: unused parameter 'nonbondedPairs' [-Wunused-parameter] { ^ AdunNonbondedTerm.m: In function '-[AdNonbondedTerm nonbondedPairs]': AdunNonbondedTerm.m:179:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ gcc AdunPureNonbondedTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunPureNonbondedTerm.m.o In file included from ../../Base/AdForceFieldFunctions.h:33:0, from ../Headers/AdunKernel/AdunPureNonbondedTerm.h:26, from AdunPureNonbondedTerm.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunPureNonbondedTerm.m: In function '-[AdPureNonbondedTerm handlerDidUpdateList:]': AdunPureNonbondedTerm.m:488:1: warning: unused parameter 'handler' [-Wunused-parameter] { ^ AdunPureNonbondedTerm.m: In function '-[AdPureNonbondedTerm handlerDidInvalidateList:]': AdunPureNonbondedTerm.m:493:1: warning: unused parameter 'handler' [-Wunused-parameter] { ^ AdunPureNonbondedTerm.m: In function '-[AdPureNonbondedTerm handlerDidHandleContentChange:]': AdunPureNonbondedTerm.m:498:1: warning: unused parameter 'handler' [-Wunused-parameter] { ^ AdunPureNonbondedTerm.m: In function '-[AdPureNonbondedTerm copyWithZone:]': AdunPureNonbondedTerm.m:812:1: warning: unused parameter 'aZone' [-Wunused-parameter] { ^ gcc AdunGRFNonbondedTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunGRFNonbondedTerm.m.o In file included from ../../Base/AdForceFieldFunctions.h:33:0, from ../Headers/AdunKernel/AdunGRFNonbondedTerm.h:26, from AdunGRFNonbondedTerm.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunGRFNonbondedTerm.m: In function '-[AdGRFNonbondedTerm handlerDidUpdateList:]': AdunGRFNonbondedTerm.m:521:1: warning: unused parameter 'handler' [-Wunused-parameter] { ^ AdunGRFNonbondedTerm.m: In function '-[AdGRFNonbondedTerm handlerDidInvalidateList:]': AdunGRFNonbondedTerm.m:526:1: warning: unused parameter 'handler' [-Wunused-parameter] { ^ AdunGRFNonbondedTerm.m: In function '-[AdGRFNonbondedTerm handlerDidHandleContentChange:]': AdunGRFNonbondedTerm.m:531:1: warning: unused parameter 'handler' [-Wunused-parameter] { ^ AdunGRFNonbondedTerm.m: In function '-[AdGRFNonbondedTerm copyWithZone:]': AdunGRFNonbondedTerm.m:848:1: warning: unused parameter 'aZone' [-Wunused-parameter] { ^ gcc AdunShiftedNonbondedTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunShiftedNonbondedTerm.m.o In file included from ../../Base/AdForceFieldFunctions.h:33:0, from ../Headers/AdunKernel/AdunShiftedNonbondedTerm.h:26, from AdunShiftedNonbondedTerm.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunShiftedNonbondedTerm.m: In function '-[AdShiftedNonbondedTerm handlerDidUpdateList:]': AdunShiftedNonbondedTerm.m:495:1: warning: unused parameter 'handler' [-Wunused-parameter] { ^ AdunShiftedNonbondedTerm.m: In function '-[AdShiftedNonbondedTerm handlerDidInvalidateList:]': AdunShiftedNonbondedTerm.m:500:1: warning: unused parameter 'handler' [-Wunused-parameter] { ^ AdunShiftedNonbondedTerm.m: In function '-[AdShiftedNonbondedTerm handlerDidHandleContentChange:]': AdunShiftedNonbondedTerm.m:505:1: warning: unused parameter 'handler' [-Wunused-parameter] { ^ AdunShiftedNonbondedTerm.m: In function '-[AdShiftedNonbondedTerm copyWithZone:]': AdunShiftedNonbondedTerm.m:795:1: warning: unused parameter 'aZone' [-Wunused-parameter] { ^ gcc AdunMultithreadedNonbondedTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunMultithreadedNonbondedTerm.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunNonbondedTerm.h:28, from ../Headers/AdunKernel/AdunMultithreadedNonbondedTerm.h:24, from AdunMultithreadedNonbondedTerm.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunMultithreadedNonbondedTerm.m: In function '-[AdMultithreadedNonbondedTerm _dividePairs:]': AdunMultithreadedNonbondedTerm.m:130:7: warning: unused variable 'forward' [-Wunused-variable] BOOL forward; ^ AdunMultithreadedNonbondedTerm.m: In function '-[AdMultithreadedNonbondedTerm evaluateForces]': AdunMultithreadedNonbondedTerm.m:295:5: warning: unused variable 'threadedObj' [-Wunused-variable] id threadedObj; ^ AdunMultithreadedNonbondedTerm.m:293:15: warning: unused variable 'finishedThreads' [-Wunused-variable] int i, j, k, finishedThreads = 0; ^ AdunMultithreadedNonbondedTerm.m: In function '-[AdMultithreadedNonbondedTerm updateTerms]': AdunMultithreadedNonbondedTerm.m:327:5: warning: unused variable 'threadedObj' [-Wunused-variable] id threadedObj; ^ AdunMultithreadedNonbondedTerm.m:326:12: warning: unused variable 'forces1' [-Wunused-variable] AdMatrix* forces1; ^ AdunMultithreadedNonbondedTerm.m:325:15: warning: unused variable 'finishedThreads' [-Wunused-variable] int i, j, k, finishedThreads = 0; ^ AdunMultithreadedNonbondedTerm.m:325:12: warning: unused variable 'k' [-Wunused-variable] int i, j, k, finishedThreads = 0; ^ AdunMultithreadedNonbondedTerm.m:325:9: warning: unused variable 'j' [-Wunused-variable] int i, j, k, finishedThreads = 0; ^ AdunMultithreadedNonbondedTerm.m:325:6: warning: unused variable 'i' [-Wunused-variable] int i, j, k, finishedThreads = 0; ^ AdunMultithreadedNonbondedTerm.m: In function '-[AdNonbondedWorkerThreadManager init]': AdunMultithreadedNonbondedTerm.m:411:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ AdunMultithreadedNonbondedTerm.m:406:5: warning: unused variable 'proxy' [-Wunused-variable] id proxy; ^ AdunMultithreadedNonbondedTerm.m:404:21: warning: unused variable 'receivePort' [-Wunused-variable] NSPort *sendPort, *receivePort; ^ AdunMultithreadedNonbondedTerm.m:404:10: warning: unused variable 'sendPort' [-Wunused-variable] NSPort *sendPort, *receivePort; ^ AdunMultithreadedNonbondedTerm.m: In function '-[AdWorkerThread initWithThreadManager:]': AdunMultithreadedNonbondedTerm.m:576:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ AdunMultithreadedNonbondedTerm.m: In function '-[AdWorkerThread handlePortMessage:]': AdunMultithreadedNonbondedTerm.m:636:1: warning: unused parameter 'portMessage' [-Wunused-parameter] { ^ gcc AdunSmoothedGBTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSmoothedGBTerm.m.o In file included from ../Headers/AdunKernel/AdunSmoothedGBTerm.h:27:0, from AdunSmoothedGBTerm.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm initWithSystem:nonbondedTerm:smoothingLength:solventPermittivity:tensionCoefficient:]': AdunSmoothedGBTerm.m:72:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ AdunSmoothedGBTerm.m:78:25: warning: operation on 'self->totalPairESTPotential' may be undefined [-Wsequence-point] totalPairESTPotential = totalPairESTPotential = totalNonpolarPotential = 0; ^ AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm _handleSystemContentsChange:]': AdunSmoothedGBTerm.m:181:1: warning: unused parameter 'aNotification' [-Wunused-parameter] { ^ AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm calculateBornRadii]': AdunSmoothedGBTerm.m:243:20: warning: unused variable 'end' [-Wunused-variable] struct tms start, end; ^ AdunSmoothedGBTerm.m:243:13: warning: unused variable 'start' [-Wunused-variable] struct tms start, end; ^ AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm(AdForceFieldTermMethods) evaluateForces]': AdunSmoothedGBTerm.m:300:29: warning: unused variable 'separation' [-Wunused-variable] double valueOne, valueTwo, separation; ^ AdunSmoothedGBTerm.m:300:19: warning: unused variable 'valueTwo' [-Wunused-variable] double valueOne, valueTwo, separation; ^ AdunSmoothedGBTerm.m:300:9: warning: unused variable 'valueOne' [-Wunused-variable] double valueOne, valueTwo, separation; ^ AdunSmoothedGBTerm.m:298:15: warning: unused variable 'atomTwo' [-Wunused-variable] int atomOne, atomTwo; ^ AdunSmoothedGBTerm.m:298:6: warning: unused variable 'atomOne' [-Wunused-variable] int atomOne, atomTwo; ^ AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm(AdForceFieldTermMethods) setExternalForceMatrix:]': AdunSmoothedGBTerm.m:415:1: warning: unused parameter 'matrix' [-Wunused-parameter] { ^ AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm(AdForceFieldTermMethods) setSystem:]': AdunSmoothedGBTerm.m:425:1: warning: unused parameter 'system' [-Wunused-parameter] { ^ gcc AdGBSWTermIntegrationMethods.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdGBSWTermIntegrationMethods.m.o In file included from ../Headers/AdunKernel/AdunSmoothedGBTerm.h:27:0, from AdGBSWTermIntegrationMethods.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdGBSWTermIntegrationMethods.m: In function '-[AdSmoothedGBTerm(LookupTableMethods) _createLookupTable]': AdGBSWTermIntegrationMethods.m:270:18: warning: unused variable 'gridCutSquared' [-Wunused-variable] double gridCut, gridCutSquared, overlapCut; ^ AdGBSWTermIntegrationMethods.m:267:17: warning: unused variable 'atomIndex' [-Wunused-variable] int gridIndex, atomIndex, numberGridPoints; ^ gcc AdGBSWTermBornRadiiMethods.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdGBSWTermBornRadiiMethods.m.o In file included from ../Headers/AdunKernel/AdunSmoothedGBTerm.h:27:0, from AdGBSWTermBornRadiiMethods.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdGBSWTermBornRadiiMethods.m: In function '-[AdSmoothedGBTerm(BornRadiusMethods) _calculateOptimisedAtomicRadii:]': AdGBSWTermBornRadiiMethods.m:180:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(residue = [residueEnum nextObject]) ^ AdGBSWTermBornRadiiMethods.m: In function '-[AdSmoothedGBTerm(BornRadiusMethods) _initBornRadiiVariables]': AdGBSWTermBornRadiiMethods.m:216:22: warning: unused variable 'paramsTwo' [-Wunused-variable] double* paramsOne, *paramsTwo; ^ AdGBSWTermBornRadiiMethods.m:216:10: warning: unused variable 'paramsOne' [-Wunused-variable] double* paramsOne, *paramsTwo; ^ AdGBSWTermBornRadiiMethods.m:215:6: warning: unused variable 'i' [-Wunused-variable] int i; ^ AdGBSWTermBornRadiiMethods.m: In function '-[AdSmoothedGBTerm(BornRadiusDerivative) _calculateDerivativesWithRespectToAtom:]': AdGBSWTermBornRadiiMethods.m:571:42: warning: unused variable 'index' [-Wunused-variable] int gridPointIndex, numberOfNeighbours, index; ^ AdGBSWTermBornRadiiMethods.m: In function 'AdPrivateVEF': AdGBSWTermBornRadiiMethods.m:890:28: warning: unused variable 'checkVal' [-Wunused-variable] double smoothingBoundary, checkVal; ^ AdGBSWTermBornRadiiMethods.m:890:9: warning: unused variable 'smoothingBoundary' [-Wunused-variable] double smoothingBoundary, checkVal; ^ AdGBSWTermBornRadiiMethods.m:889:9: warning: unused variable 'j' [-Wunused-variable] int i, j, index, count; ^ gcc AdunForceField.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunForceField.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunForceField.h:30, from AdunForceField.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunForceField.m: In function '-[AdForceField initWithSystem:]': AdunForceField.m:27:1: warning: unused parameter 'system' [-Wunused-parameter] { ^ AdunForceField.m: In function '-[AdForceField evaluateForcesDueToElements:]': AdunForceField.m:40:1: warning: unused parameter 'elementIndexes' [-Wunused-parameter] { ^ AdunForceField.m: In function '-[AdForceField forces]': AdunForceField.m:53:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunForceField.m: In function '-[AdForceField totalEnergy]': AdunForceField.m:69:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunForceField.m: In function '-[AdForceField evaluateEnergiesUsingInteractionsInvolvingElements:]': AdunForceField.m:80:1: warning: unused parameter 'elementIndexes' [-Wunused-parameter] { ^ AdunForceField.m: In function '-[AdForceField system]': AdunForceField.m:93:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunForceField.m: In function '-[AdForceField setSystem:]': AdunForceField.m:96:1: warning: unused parameter 'object' [-Wunused-parameter] { ^ AdunForceField.m: In function '-[AdForceField arrayOfEnergiesForTerms:notFoundMarker:]': AdunForceField.m:109:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunForceField.m:104:1: warning: unused parameter 'terms' [-Wunused-parameter] { ^ AdunForceField.m:104:1: warning: unused parameter 'anObject' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField dictionaryOfEnergiesForTerms:]': AdunForceField.m:117:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunForceField.m:112:1: warning: unused parameter 'array' [-Wunused-parameter] { ^ AdunForceField.m: In function '-[AdForceField availableTerms]': AdunForceField.m:125:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunForceField.m: In function '-[AdForceField activatedTerms]': AdunForceField.m:133:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunForceField.m: In function '-[AdForceField deactivatedTerms]': AdunForceField.m:141:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunForceField.m: In function '-[AdForceField addCustomTerm:withName:]': AdunForceField.m:144:1: warning: unused parameter 'object' [-Wunused-parameter] { ^ AdunForceField.m:144:1: warning: unused parameter 'name' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField addCustomTerms:]': AdunForceField.m:152:1: warning: unused parameter 'aDict' [-Wunused-parameter] { ^ AdunForceField.m: In function '-[AdForceField removeCustomTermWithName:]': AdunForceField.m:160:1: warning: unused parameter 'name' [-Wunused-parameter] { ^ AdunForceField.m: In function '-[AdForceField deactivateTerm:]': AdunForceField.m:168:1: warning: unused parameter 'termName' [-Wunused-parameter] { ^ AdunForceField.m: In function '-[AdForceField deactivateTermsWithNames:]': AdunForceField.m:176:1: warning: unused parameter 'names' [-Wunused-parameter] { ^ AdunForceField.m: In function '-[AdForceField activateTerm:]': AdunForceField.m:184:1: warning: unused parameter 'termName' [-Wunused-parameter] { ^ AdunForceField.m: In function '-[AdForceField activateTermsWithNames:]': AdunForceField.m:192:1: warning: unused parameter 'names' [-Wunused-parameter] { ^ AdunForceField.m: In function '-[AdForceField accelerations]': AdunForceField.m:205:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ gcc AdunMolecularMechanicsForceField.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunMolecularMechanicsForceField.m.o In file included from ../Headers/AdunKernel/AdunMolecularMechanicsForceField.h:31:0, from AdunMolecularMechanicsForceField.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunMolecularMechanicsForceField.m: In function '+[AdMolecularMechanicsForceField classForForceField:]': AdunMolecularMechanicsForceField.m:135:3: warning: @interface of class 'AdEnzymixForceField' not found [enabled by default] return [AdEnzymixForceField class]; ^ AdunMolecularMechanicsForceField.m:140:3: warning: @interface of class 'AdEnzymixForceField' not found [enabled by default] return [AdEnzymixForceField class]; ^ AdunMolecularMechanicsForceField.m:142:3: warning: @interface of class 'AdCharmmForceField' not found [enabled by default] return [AdCharmmForceField class]; ^ AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField initWithSystem:nonbondedTerm:customTerms:]': AdunMolecularMechanicsForceField.m:185:1: warning: unused parameter 'system' [-Wunused-parameter] { ^ AdunMolecularMechanicsForceField.m:185:1: warning: unused parameter 'anObject' [-Wunused-parameter] AdunMolecularMechanicsForceField.m:185:1: warning: unused parameter 'aDict' [-Wunused-parameter] AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField evaluateForcesDueToElements:]': AdunMolecularMechanicsForceField.m:230:1: warning: unused parameter 'elementIndexes' [-Wunused-parameter] { ^ AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField evaluateEnergiesUsingInteractionsInvolvingElements:]': AdunMolecularMechanicsForceField.m:242:1: warning: unused parameter 'elementIndexes' [-Wunused-parameter] { ^ AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField evaluateFiniteDifferenceForcesForTerm:]': AdunMolecularMechanicsForceField.m:249:12: warning: unused variable 'coordinates' [-Wunused-variable] AdMatrix* coordinates; ^ AdunMolecularMechanicsForceField.m:266:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunMolecularMechanicsForceField.m:248:1: warning: unused parameter 'term' [-Wunused-parameter] { ^ AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField arrayOfEnergiesForTerms:notFoundMarker:]': AdunMolecularMechanicsForceField.m:503:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(termName = [notFoundEnum nextObject]) ^ AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField allTerms]': AdunMolecularMechanicsForceField.m:544:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(termName = [nameEnum nextObject]) ^ AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField allEnergies]': AdunMolecularMechanicsForceField.m:563:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(termName = [nameEnum nextObject]) ^ AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField description]': AdunMolecularMechanicsForceField.m:692:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(term = [termEnum nextObject]) ^ AdunMolecularMechanicsForceField.m:710:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(term = [termEnum nextObject]) ^ AdunMolecularMechanicsForceField.m:715:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(term = [termEnum nextObject]) ^ AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField(PrivateInternals) _handleSystemContentsChange:]': AdunMolecularMechanicsForceField.m:944:1: warning: unused parameter 'aNotification' [-Wunused-parameter] { ^ gcc AdunEnzymixForceField.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunEnzymixForceField.m.o In file included from ../Headers/AdunKernel/AdunMolecularMechanicsForceField.h:31:0, from ../Headers/AdunKernel/AdunEnzymixForceField.h:27, from AdunEnzymixForceField.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunEnzymixForceField.m: At top level: AdunEnzymixForceField.m:358:1: warning: incomplete implementation of class 'AdEnzymixForceField' [enabled by default] @end ^ AdunEnzymixForceField.m:358:1: warning: method definition for '-evaluateForcesDueToElements:' not found [enabled by default] gcc AdunAmberForceField.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunAmberForceField.m.o In file included from ../Headers/AdunKernel/AdunMolecularMechanicsForceField.h:31:0, from ../Headers/AdunKernel/AdunAmberForceField.h:25, from AdunAmberForceField.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunAmberForceField.m: At top level: AdunAmberForceField.m:342:1: warning: incomplete implementation of class 'AdAmberForceField' [enabled by default] @end ^ AdunAmberForceField.m:342:1: warning: method definition for '-evaluateForcesDueToElements:' not found [enabled by default] gcc AdunCharmmForceField.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunCharmmForceField.m.o In file included from ../Headers/AdunKernel/AdunMolecularMechanicsForceField.h:31:0, from ../Headers/AdunKernel/AdunCharmmForceField.h:25, from AdunCharmmForceField.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunCharmmForceField.m: At top level: AdunCharmmForceField.m:546:1: warning: incomplete implementation of class 'AdCharmmForceField' [enabled by default] @end ^ AdunCharmmForceField.m:546:1: warning: method definition for '-evaluateForcesDueToElements:' not found [enabled by default] gcc AdunForceFieldCollection.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunForceFieldCollection.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunForceField.h:30, from ../Headers/AdunKernel/AdunForceFieldCollection.h:25, from AdunForceFieldCollection.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunForceFieldCollection.m: In function '-[AdForceFieldCollection forceFieldsForSystems:]': AdunForceFieldCollection.m:151:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(system = [systemEnum nextObject]) ^ AdunForceFieldCollection.m:147:16: warning: unused variable 'forceField' [-Wunused-variable] AdForceField* forceField; ^ gcc AdunConfigurationGenerator.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunConfigurationGenerator.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSystemCollection.h:25, from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from AdunConfigurationGenerator.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator production:]': AdunConfigurationGenerator.m:128:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunConfigurationGenerator.m:125:1: warning: unused parameter 'error' [-Wunused-parameter] { ^ AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator restartFrom:error:]': AdunConfigurationGenerator.m:134:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunConfigurationGenerator.m:131:1: warning: unused parameter 'step' [-Wunused-parameter] { ^ AdunConfigurationGenerator.m:131:1: warning: unused parameter 'error' [-Wunused-parameter] AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator numberOfSteps]': AdunConfigurationGenerator.m:146:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator setNumberOfSteps:]': AdunConfigurationGenerator.m:149:1: warning: unused parameter 'aNumber' [-Wunused-parameter] { ^ AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator currentStep]': AdunConfigurationGenerator.m:158:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator systems]': AdunConfigurationGenerator.m:165:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator forceFields]': AdunConfigurationGenerator.m:172:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ gcc AdunSimulator.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSimulator.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSystemCollection.h:25, from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from ../Headers/AdunKernel/AdunSimulator.h:26, from AdunSimulator.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunSimulator.m: In function '-[AdSimulator description]': AdunSimulator.m:154:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(component = [componentEnum nextObject]) ^ AdunSimulator.m: In function '-[AdSimulator _simulateFrom:to:]': AdunSimulator.m:168:12: warning: variable 'name' set but not used [-Wunused-but-set-variable] NSString* name; ^ AdunSimulator.m: In function '-[AdSimulator production:]': AdunSimulator.m:398:2: warning: 'startDate' may be used uninitialized in this function [-Wmaybe-uninitialized] GSPrintf(stdout, @"\nFinish date %@. Seconds since start %.3lf", finishDate, -1*[startDate timeIntervalSinceNow]); ^ gcc AdunMinimiser.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunMinimiser.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSystemCollection.h:25, from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from ../Headers/AdunKernel/AdunMinimiser.h:27, from AdunMinimiser.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunMinimiser.m: In function '-[AdMinimiser dealloc]': AdunMinimiser.m:210:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(key = [keyEnum nextObject]) ^ AdunMinimiser.m: In function '-[AdMinimiser production:]': AdunMinimiser.m:227:1: warning: unused parameter 'error' [-Wunused-parameter] { ^ AdunMinimiser.m: In function '-[AdMinimiser restartFrom:error:]': AdunMinimiser.m:354:1: warning: unused parameter 'step' [-Wunused-parameter] { ^ AdunMinimiser.m:354:1: warning: unused parameter 'error' [-Wunused-parameter] AdunMinimiser.m: In function '-[AdMinimiser setConstraints:forSystem:]': AdunMinimiser.m:499:11: warning: unused variable 'pointer' [-Wunused-variable] NSValue *pointer; ^ AdunMinimiser.m: In function '-[AdMinimiser(GSLWrappers) energyOfConfiguration:usingParameters:]': AdunMinimiser.m:656:1: warning: unused parameter 'params' [-Wunused-parameter] { ^ AdunMinimiser.m: In function '-[AdMinimiser(GSLWrappers) energyAndGradientOfConfiguration:usingParameters:energyBuffer:gradientBuffer:]': AdunMinimiser.m:741:9: warning: unused variable 'value' [-Wunused-variable] double value, energy; ^ AdunMinimiser.m:738:1: warning: unused parameter 'params' [-Wunused-parameter] { ^ gcc AdunBerendsenThermostat.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunBerendsenThermostat.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSystemCollection.h:25, from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from ../Headers/AdunKernel/AdunSimulator.h:26, from ../Headers/AdunKernel/AdunBerendsenThermostat.h:3, from AdunBerendsenThermostat.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat _removeTranslationalDOF]': AdunBerendsenThermostat.m:14:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(system = [systemEnum nextObject]) ^ AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulator:willBeginProductionWithSystems:forceFields:]': AdunBerendsenThermostat.m:136:9: warning: unused variable 'difference' [-Wunused-variable] double difference; ^ AdunBerendsenThermostat.m:135:1: warning: unused parameter 'aForceFieldCollection' [-Wunused-parameter] { ^ AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorWillPerformFirstVelocityUpdateForSystem:]': AdunBerendsenThermostat.m:278:1: warning: unused parameter 'aSystem' [-Wunused-parameter] { ^ AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorWillPerformPositionUpdateForSystem:]': AdunBerendsenThermostat.m:283:1: warning: unused parameter 'aSystem' [-Wunused-parameter] { ^ AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorDidPerformPositionUpdateForSystem:]': AdunBerendsenThermostat.m:288:1: warning: unused parameter 'aSystem' [-Wunused-parameter] { ^ AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorWillPerformSecondVelocityUpdateForSystem:]': AdunBerendsenThermostat.m:293:1: warning: unused parameter 'aSystem' [-Wunused-parameter] { ^ AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorDidFinishProduction:]': AdunBerendsenThermostat.m:298:1: warning: unused parameter 'aSimulator' [-Wunused-parameter] { ^ gcc AdunLangevinThermostat.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunLangevinThermostat.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSystemCollection.h:25, from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from ../Headers/AdunKernel/AdunSimulator.h:26, from ../Headers/AdunKernel/AdunLangevinThermostat.h:30, from AdunLangevinThermostat.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunLangevinThermostat.m: In function '-[AdLangevinThermostat _destroySystemForceMatricesAndMassArrays]': AdunLangevinThermostat.m:119:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(valueObject = [matrixEnum nextObject]) ^ AdunLangevinThermostat.m: In function '-[AdLangevinThermostat _removeTranslationalDOF]': AdunLangevinThermostat.m:140:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(system = [systemEnum nextObject]) ^ AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulator:willBeginProductionWithSystems:forceFields:]': AdunLangevinThermostat.m:231:1: warning: unused parameter 'aForceFieldCollection' [-Wunused-parameter] { ^ AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulatorDidFinishProduction:]': AdunLangevinThermostat.m:250:1: warning: unused parameter 'aSimulator' [-Wunused-parameter] { ^ AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulatorWillPerformPositionUpdateForSystem:]': AdunLangevinThermostat.m:287:1: warning: unused parameter 'aSystem' [-Wunused-parameter] { ^ AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulatorDidPerformPositionUpdateForSystem:]': AdunLangevinThermostat.m:292:1: warning: unused parameter 'aSystem' [-Wunused-parameter] { ^ AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulatorWillPerformSecondVelocityUpdateForSystem:]': AdunLangevinThermostat.m:297:1: warning: unused parameter 'aSystem' [-Wunused-parameter] { ^ gcc AdunMemoryManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunMemoryManager.m.o AdunMemoryManager.m: In function '-[AdMemoryManager freeDoubleMatrix:withRows:]': AdunMemoryManager.m:284:1: warning: unused parameter 'no_rows' [-Wunused-parameter] { ^ gcc -nostdlib -r -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./obj/subproject.o obj/Framework.obj/AdFrameworkFunctions.m.o obj/Framework.obj/AdIndexSetConversions.m.o obj/Framework.obj/AdunTimer.m.o obj/Framework.obj/AdunModelObject.m.o obj/Framework.obj/AdunMatrixStructureCoder.m.o obj/Framework.obj/AdunDataMatrix.m.o obj/Framework.obj/AdunDataSet.m.o obj/Framework.obj/AdunDataSource.m.o obj/Framework.obj/AdunContainerDataSource.m.o obj/Framework.obj/AdunElementSelection.m.o obj/Framework.obj/AdunGrid.m.o obj/Framework.obj/AdunSphericalBox.m.o obj/Framework.obj/AdunEllipsoidBox.m.o obj/Framework.obj/AdunCuboidBox.m.o obj/Framework.obj/AdunMoleculeCavity.m.o obj/Framework.obj/AdunCellListHandler.m.o obj/Framework.obj/AdunSimpleListHandler.m.o obj/Framework.obj/AdunLinkedList.m.o obj/Framework.obj/AdunListHandler.m.o obj/Framework.obj/AdunDynamics.m.o obj/Framework.obj/AdunInteractionSystem.m.o obj/Framework.obj/AdunSystem.m.o obj/Framework.obj/AdunSystemCollection.m.o obj/Framework.obj/AdunHarmonicConstraintTerm.m.o obj/Framework.obj/AdunSCAAS.m.o obj/Framework.obj/AdunNonbondedTerm.m.o obj/Framework.obj/AdunPureNonbondedTerm.m.o obj/Framework.obj/AdunGRFNonbondedTerm.m.o obj/Framework.obj/AdunShiftedNonbondedTerm.m.o obj/Framework.obj/AdunMultithreadedNonbondedTerm.m.o obj/Framework.obj/AdunSmoothedGBTerm.m.o obj/Framework.obj/AdGBSWTermIntegrationMethods.m.o obj/Framework.obj/AdGBSWTermBornRadiiMethods.m.o obj/Framework.obj/AdunForceField.m.o obj/Framework.obj/AdunMolecularMechanicsForceField.m.o obj/Framework.obj/AdunEnzymixForceField.m.o obj/Framework.obj/AdunAmberForceField.m.o obj/Framework.obj/AdunCharmmForceField.m.o obj/Framework.obj/AdunForceFieldCollection.m.o obj/Framework.obj/AdunConfigurationGenerator.m.o obj/Framework.obj/AdunSimulator.m.o obj/Framework.obj/AdunMinimiser.m.o obj/Framework.obj/AdunBerendsenThermostat.m.o obj/Framework.obj/AdunLangevinThermostat.m.o obj/Framework.obj/AdunMemoryManager.m.o ; make[3]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' make[3]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all in subprojects of subproject CoreAdditions... make[4]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for subproject CoreCommands... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/CoreCommands.obj/ gcc AdStatusCommand.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../../../ -I../../Headers/ -I../ -I/usr/local/include -I./../../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreCommands.obj/AdStatusCommand.m.o In file included from ../../Headers/AdunKernel/AdunListHandler.h:26:0, from ../../Headers/AdunKernel/AdunSystem.h:29, from ../../Headers/AdunKernel/AdunSystemCollection.h:25, from ../../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from ../../Headers/AdunKernel/AdunCore.h:28, from ../Commands/AdStatusCommand.h:25, from AdStatusCommand.m:22: ../../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdStatusCommand.m: In function '-[AdCore(AdStatusCommand) status:]': AdStatusCommand.m:27:1: warning: unused parameter 'options' [-Wunused-parameter] { ^ gcc AdEndSimulationCommand.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../../../ -I../../Headers/ -I../ -I/usr/local/include -I./../../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreCommands.obj/AdEndSimulationCommand.m.o In file included from ../../Headers/AdunKernel/AdunListHandler.h:26:0, from ../../Headers/AdunKernel/AdunSystem.h:29, from ../../Headers/AdunKernel/AdunSystemCollection.h:25, from ../../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from ../../Headers/AdunKernel/AdunCore.h:28, from ../Commands/AdEndSimulationCommand.h:25, from AdEndSimulationCommand.m:23: ../../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdEndSimulationCommand.m: In function '-[AdCore(AdEndSimulationCommand) endSimulation:]': AdEndSimulationCommand.m:28:1: warning: unused parameter 'options' [-Wunused-parameter] { ^ gcc -nostdlib -r -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./obj/subproject.o obj/CoreCommands.obj/AdStatusCommand.m.o obj/CoreCommands.obj/AdEndSimulationCommand.m.o ; make[4]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making all for subproject CoreAdditions... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/CoreAdditions.obj/ gcc AdunTemplateProcessor.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunTemplateProcessor.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunKernel.h:25, from ../Headers/AdunKernel/AdunTemplateProcessor.h:25, from AdunTemplateProcessor.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunTemplateProcessor.m: In function '-[AdTemplateProcessor validateTemplate:error:]': AdunTemplateProcessor.m:344:54: warning: comparison between pointer and integer [enabled by default] if(![testTemplate objectForKey: @"externalObjects"] == nil) ^ gcc AdunController.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunController.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunKernel.h:25, from ../Headers/AdunKernel/AdunController.h:26, from AdunController.m:23: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunController.m: In function '-[AdController runController]': AdunController.m:319:23: warning: unused variable 'dict' [-Wunused-variable] NSMutableDictionary* dict; ^ AdunController.m: In function '-[AdController(AdControllerThreadingExtensions) stopSimulation:]': AdunController.m:507:1: warning: unused parameter 'core' [-Wunused-parameter] { ^ AdunController.m: In function '-[AdController(AdControllerThreadingExtensions) terminateSimulation:]': AdunController.m:513:1: warning: unused parameter 'core' [-Wunused-parameter] { ^ gcc AdunIOManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunIOManager.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunIOManager.h:32, from AdunIOManager.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunIOManager.m: In function '-[AdIOManager processCommandLine:]': AdunIOManager.m:328:30: warning: variable 'invalidArgs' set but not used [-Wunused-but-set-variable] NSMutableArray* arguments, *invalidArgs; ^ AdunIOManager.m: In function '-[AdIOManager loadData:]': AdunIOManager.m:699:33: warning: unused variable 'readModeStorage' [-Wunused-variable] AdFileSystemSimulationStorage* readModeStorage; ^ AdunIOManager.m:698:27: warning: unused variable 'dataDirectory' [-Wunused-variable] NSString* templateFile, *dataDirectory; ^ AdunIOManager.m:698:12: warning: unused variable 'templateFile' [-Wunused-variable] NSString* templateFile, *dataDirectory; ^ AdunIOManager.m: In function '-[AdIOManager closeAllStreams]': AdunIOManager.m:1215:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(name = [enumerator nextObject]) ^ AdunIOManager.m: In function '-[AdIOManager(SimulationDataLoading) _loadRestartData:]': AdunIOManager.m:1361:16: warning: unused variable 'systemEnum' [-Wunused-variable] NSEnumerator* systemEnum; ^ AdunIOManager.m:1358:6: warning: variable 'numberOfFrames' set but not used [-Wunused-but-set-variable] int numberOfFrames, numberOfSystems, numberOfExternalObjects; ^ AdunIOManager.m: In function '-[AdIOManager _createLogFilesForNewRun:]': AdunIOManager.m:519:9: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result] freopen([errorFile cString], "w", stderr); ^ AdunIOManager.m:520:9: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result] freopen([logFile cString], "w", stdout); ^ AdunIOManager.m: In function '-[AdIOManager _setupLogFilesForContinuationRun:]': AdunIOManager.m:600:9: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result] freopen([errorFile cString], "a", stderr); ^ AdunIOManager.m:601:9: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result] freopen([logFile cString], "a", stdout); ^ AdunIOManager.m: In function '-[AdIOManager _createSimulationOutputFiles:]': AdunIOManager.m:867:12: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result] freopen([newLocation cString], "w", stdout); ^ AdunIOManager.m:894:12: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result] freopen([newLocation cString], "w", stderr); ^ gcc AdunFileSystemSimulationStorage.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunFileSystemSimulationStorage.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunFileSystemSimulationStorage.h:25, from AdunFileSystemSimulationStorage.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunFileSystemSimulationStorage.m: In function '-[AdFileSystemSimulationStorage _loadTrajectoryFrame:]': AdunFileSystemSimulationStorage.m:218:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if([cacheFrames count] > cacheLimit) ^ AdunFileSystemSimulationStorage.m: In function '-[AdFileSystemSimulationStorage _checkStorage]': AdunFileSystemSimulationStorage.m:283:7: warning: unused variable 'isDirectory' [-Wunused-variable] BOOL isDirectory; ^ gcc AdunSimulationData.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunSimulationData.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSimulationData.h:31, from AdunSimulationData.m:23: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunSimulationData.m: In function '-[AdSimulationData numberOfFramesForSystem:]': AdunSimulationData.m:482:1: warning: unused parameter 'system' [-Wunused-parameter] { ^ AdunSimulationData.m: In function '-[AdSimulationDataWriter initWithDataStorage:systems:forceFields:iterationHeader:]': AdunSimulationData.m:573:22: warning: variable 'storedSystemCollection' set but not used [-Wunused-but-set-variable] AdSystemCollection* storedSystemCollection; //!< Used fo AdSimulationStorageAppendMode ^ AdunSimulationData.m: In function '-[AdSimulationDataWriter _addEnergyCheckpoint]': AdunSimulationData.m:818:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(term = [termEnum nextObject]) ^ AdunSimulationData.m:826:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(term = [termEnum nextObject]) ^ gcc AdunTrajectory.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunTrajectory.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunTrajectory.h:31, from AdunTrajectory.m:23: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ AdunTrajectory.m: In function '-[AdTrajectory(DataLoadingMethods) setDataStorage:]': AdunTrajectory.m:146:12: warning: unused variable 'dataId' [-Wunused-variable] NSString* dataId; ^ AdunTrajectory.m:145:9: warning: unused variable 'size' [-Wunused-variable] double size; ^ AdunTrajectory.m: In function '-[AdTrajectory compareCheckpointsForSystem:inTrajectory:toSystem:range:]': AdunTrajectory.m:234:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i=range.location; i ./derived_src/AdunKernel-class-list; \ echo "#include " > derived_src/NSFramework_AdunKernel.m; \ echo "@interface NSFramework_AdunKernel" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *)frameworkEnv;" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *)frameworkPath;" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_AdunKernel.m; \ echo "@end" >> derived_src/NSFramework_AdunKernel.m; \ echo "@implementation NSFramework_AdunKernel" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *)frameworkEnv { return nil; }" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *)frameworkPath { return @\"/home/buildd/GNUstep/Library/Frameworks\"; }" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *)frameworkVersion { return @\"0\"; }" >> derived_src/NSFramework_AdunKernel.m; \ echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_AdunKernel.m;\ echo "@end" >> derived_src/NSFramework_AdunKernel.m gcc derived_src/NSFramework_AdunKernel.m -c -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -std=gnu89 -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/usr/local/include -I/usr/local/include -I./Headers -I. -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep -o obj/AdunKernel.obj/NSFramework_AdunKernel.o \ gcc -shared -Wl,-soname,libAdunKernel.so.0 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./AdunKernel.framework/Versions/0/./libAdunKernel.so.0.13 obj/AdunKernel.obj/NSFramework_AdunKernel.o Framework//obj/subproject.o CoreAdditions//obj/subproject.o -L/usr/local/lib -L../Base/./obj -L/usr/local/lib -L/usr/local/lib -L/usr/lib -ladun_base -lgsl -lgslcblas -lm -lgnustep-base -lobjc && (cd ./AdunKernel.framework/Versions/0/.; rm -f libAdunKernel.so; if [ "libAdunKernel.so.0" != "libAdunKernel.so.0.13" ]; then rm -f libAdunKernel.so.0; ln -s libAdunKernel.so.0.13 libAdunKernel.so.0; fi; ln -s libAdunKernel.so.0 libAdunKernel.so; ) || rm -f ./AdunKernel.framework/Versions/0/./libAdunKernel.so.0.13 ; \ (cd ./AdunKernel.framework/Versions/0/.; \ rm -f AdunKernel; \ ln -s libAdunKernel.so AdunKernel) \ for f in Resources/ScriptingInfo.plist Resources/GBSWData/; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./AdunKernel.framework/Versions/0/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done for subproject in Framework/ CoreAdditions/; do \ if [ -d $subproject/Resources/Subproject ]; then \ for f in $subproject/Resources/Subproject/*; do \ if [ $f != $subproject'/Resources/Subproject/*' ]; then \ cp -fr $f ./AdunKernel.framework/Versions/0/Resources/; \ fi; \ done; \ fi; \ done (echo "{"; echo ' NOTE = "Automatically generated, do not edit!";'; \ echo " NSExecutable = \"AdunKernel\";"; \ echo " NSMainNibFile = \"\";"; \ echo " NSPrincipalClass = \"AdunKernel\";"; \ echo " Classes = "; \ cat ./derived_src/AdunKernel-class-list; \ echo " ;"; \ echo "}") >AdunKernel.framework/Versions/0/Resources/Info-gnustep.plist if [ -r "AdunKernelInfo.plist" ]; then \ plmerge AdunKernel.framework/Versions/0/Resources/Info-gnustep.plist AdunKernelInfo.plist; \ fi cd ./AdunKernel.framework/.; \ rm -f AdunKernel libAdunKernel.so; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./AdunKernel short` \ AdunKernel; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./libAdunKernel.so short` \ libAdunKernel.so make[2]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj /usr/share/GNUstep/Makefiles/mkinstalldirs Resources Making all for tool AdunCore... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/AdunCore.obj/ gcc main.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -IComponents/ -IFramework/ -IAdunKernel/Headers -I/usr/local/include -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/AdunCore.obj/main.m.o In file included from AdunKernel/Headers/AdunKernel/AdunListHandler.h:26:0, from AdunKernel/Headers/AdunKernel/AdunSystem.h:29, from AdunKernel/Headers/AdunKernel/AdFrameworkFunctions.h:6, from AdunKernel/Headers/AdunKernel/AdunKernel.h:25, from AdunKernel/Headers/AdunKernel/AdunController.h:26, from main.m:12: ./Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ./Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] extern inline int AdUnsafeLinkedListAdd(ListElement *list_el, ListElement *list_end, int index) ^ main.m: In function 'registerDefaults': main.m:185:33: warning: unused parameter 'error' [-Wunused-parameter] BOOL registerDefaults(NSError** error) ^ main.m: In function 'main': main.m:222:14: warning: unused variable 'fileName' [-Wunused-variable] id results, fileName; ^ main.m:222:5: warning: unused variable 'results' [-Wunused-variable] id results, fileName; ^ main.m:213:14: warning: unused parameter 'argc' [-Wunused-parameter] int main(int argc, char** argv) ^ main.m:213:27: warning: unused parameter 'argv' [-Wunused-parameter] int main(int argc, char** argv) ^ gcc -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -fgnu-runtime -o obj/AdunCore \ ./obj/AdunCore.obj/main.m.o \ -L/usr/local/lib -LBase/./obj -LAdunKernel/AdunKernel.framework/Versions/Current -L/opt/intel/lib -L/usr/local/lib -L/usr/lib -lAdunKernel -ladun_base -lgnustep-base -lobjc -lm /usr/share/GNUstep/Makefiles/mkinstalldirs Resources/AdunCore make[1]: Leaving directory `/build/buildd/adun.app-0.81/Kernel' Making all in MolTalk/ ... make[1]: Entering directory `/build/buildd/adun.app-0.81/MolTalk' Making build-headers for framework MolTalk... /usr/share/GNUstep/Makefiles/mkinstalldirs MolTalk.framework/Versions/3/Headers /usr/bin/install -c -p -m 644 MolTalk.h MolTalk.framework/Versions/3/Headers/MolTalk.h /usr/bin/install -c -p -m 644 MTAtom.h MolTalk.framework/Versions/3/Headers/MTAtom.h /usr/bin/install -c -p -m 644 MTAlPos.h MolTalk.framework/Versions/3/Headers/MTAlPos.h /usr/bin/install -c -p -m 644 MTChain.h MolTalk.framework/Versions/3/Headers/MTChain.h /usr/bin/install -c -p -m 644 MTCoordinates.h MolTalk.framework/Versions/3/Headers/MTCoordinates.h /usr/bin/install -c -p -m 644 MTResidue.h MolTalk.framework/Versions/3/Headers/MTResidue.h /usr/bin/install -c -p -m 644 MTSelection.h MolTalk.framework/Versions/3/Headers/MTSelection.h /usr/bin/install -c -p -m 644 MTStructure.h MolTalk.framework/Versions/3/Headers/MTStructure.h /usr/bin/install -c -p -m 644 MTString.h MolTalk.framework/Versions/3/Headers/MTString.h /usr/bin/install -c -p -m 644 MTStream.h MolTalk.framework/Versions/3/Headers/MTStream.h /usr/bin/install -c -p -m 644 MTFileStream.h MolTalk.framework/Versions/3/Headers/MTFileStream.h /usr/bin/install -c -p -m 644 MTCompressedFileStream.h MolTalk.framework/Versions/3/Headers/MTCompressedFileStream.h /usr/bin/install -c -p -m 644 MTMatrix53.h MolTalk.framework/Versions/3/Headers/MTMatrix53.h /usr/bin/install -c -p -m 644 MTMatrix44.h MolTalk.framework/Versions/3/Headers/MTMatrix44.h /usr/bin/install -c -p -m 644 MTMatrix.h MolTalk.framework/Versions/3/Headers/MTMatrix.h /usr/bin/install -c -p -m 644 MTVector.h MolTalk.framework/Versions/3/Headers/MTVector.h /usr/bin/install -c -p -m 644 MTPairwiseStrxAlignment.h MolTalk.framework/Versions/3/Headers/MTPairwiseStrxAlignment.h /usr/bin/install -c -p -m 644 MTPairwiseSequenceAlignment.h MolTalk.framework/Versions/3/Headers/MTPairwiseSequenceAlignment.h /usr/bin/install -c -p -m 644 MTSubstitutionMatrix.h MolTalk.framework/Versions/3/Headers/MTSubstitutionMatrix.h /usr/bin/install -c -p -m 644 MTStructureFactory.h MolTalk.framework/Versions/3/Headers/MTStructureFactory.h /usr/bin/install -c -p -m 644 MTChainFactory.h MolTalk.framework/Versions/3/Headers/MTChainFactory.h /usr/bin/install -c -p -m 644 MTResidueFactory.h MolTalk.framework/Versions/3/Headers/MTResidueFactory.h /usr/bin/install -c -p -m 644 MTAtomFactory.h MolTalk.framework/Versions/3/Headers/MTAtomFactory.h /usr/bin/install -c -p -m 644 MTQuaternion.h MolTalk.framework/Versions/3/Headers/MTQuaternion.h /usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \ touch derived_src/.stamp /usr/share/GNUstep/Makefiles/mkinstalldirs MolTalk.framework/Versions/3/Resources cd ./MolTalk.framework/Versions; \ rm -f Current; \ ln -s 3 Current cd ./MolTalk.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "MolTalk" ]; then \ rm -f ./MolTalk; \ ln -s ../MolTalk.framework/Headers \ ./MolTalk; \ fi cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for framework MolTalk... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/MolTalk.obj/ gcc MolTalk.c -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MolTalk.c.o gcc MTAtom.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTAtom.m.o gcc MTAlPos.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTAlPos.m.o gcc MTChain.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTChain.m.o MTChain.m: In function '-[MTChain removeResidue:]': MTChain.m:488:12: warning: unused variable 'p_num' [-Wunused-variable] NSString *p_num = [p_res key]; ^ MTChain.m: In function '-[MTChain selectResiduesCloseTo:maxDistance:]': MTChain.m:633:15: warning: variable 'seq2' set but not used [-Wunused-but-set-variable] char *seq1, *seq2; ^ MTChain.m:633:8: warning: variable 'seq1' set but not used [-Wunused-but-set-variable] char *seq1, *seq2; ^ MTChain.m: In function '-[MTChain deepCopy]': MTChain.m:922:13: warning: unused variable 'prevres' [-Wunused-variable] MTResidue *prevres; ^ MTChain.m: In function '-[MTChain deepCopyCA]': MTChain.m:997:13: warning: unused variable 'prevres' [-Wunused-variable] MTResidue *prevres; ^ MTChain.m: In function '-[MTChain selectResiduesCloseTo:maxDistance:]': MTChain.m:727:10: warning: 'z1' may be used uninitialized in this function [-Wmaybe-uninitialized] tval = z1 - [calpha z]; ^ MTChain.m:725:10: warning: 'y1' may be used uninitialized in this function [-Wmaybe-uninitialized] tval = y1 - [calpha y]; ^ MTChain.m:723:10: warning: 'x1' may be used uninitialized in this function [-Wmaybe-uninitialized] tval = x1 - [calpha x]; ^ gcc privateMTChain.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/privateMTChain.m.o gcc MTCoordinates.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTCoordinates.m.o gcc MTResidue.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTResidue.m.o MTResidue.m: In function '-[MTResidue compare:]': MTResidue.m:156:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gcc privateMTResidue.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/privateMTResidue.m.o gcc MTSelection.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTSelection.m.o gcc privateMTSelection.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/privateMTSelection.m.o gcc MTStructure.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTStructure.m.o In file included from /usr/include/GNUstep/Foundation/NSObject.h:38:0, from /usr/include/GNUstep/Foundation/FoundationErrors.h:29, from /usr/include/GNUstep/Foundation/Foundation.h:33, from MTStructure.h:27, from MTStructure.m:28: MTStructure.m: In function '-[MTStructure writePDBToStream:asModel:]': MTStructure.m:447:26: warning: unused variable 'poolinner' [-Wunused-variable] CREATE_AUTORELEASE_POOL(poolinner); ^ /usr/include/GNUstep/GNUstepBase/GNUstep.h:181:22: note: in definition of macro 'CREATE_AUTORELEASE_POOL' NSAutoreleasePool *X = [NSAutoreleasePool new] ^ gcc privateMTStructure.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/privateMTStructure.m.o privateMTStructure.m: In function '-[MTStructure(Private) writePDBHeaderTo:]': privateMTStructure.m:230:33: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] snprintf(tbuffer, 10, "% 4u ", [[residue number] intValue]); ^ privateMTStructure.m:230:33: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] privateMTStructure.m: In function '-[MTStructure(Private) writePDBConectResidue:to:]': privateMTStructure.m:414:33: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] sprintf(buffer,"CONECT% 5u",[[atom number] intValue]); ^ privateMTStructure.m:417:25: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] snprintf(buffer+(i*5)+11,6,"% 5u",[[atom2 number] intValue]); ^ privateMTStructure.m:417:25: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] privateMTStructure.m: In function '-[MTStructure(Private) writePDBChain:to:fromSerial:]': privateMTStructure.m:470:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] snprintf(tbuffer, 10, "% 4u ", [[lastres number] intValue]); /* residue number */ ^ privateMTStructure.m:470:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] privateMTStructure.m:472:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] snprintf(buffer+6,6,"% 5u",*serial); buffer[11]=' '; *serial = *serial + 1; ^ privateMTStructure.m:472:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] privateMTStructure.m: In function '-[MTStructure(Private) writePDBResidue:inChain:to:fromSerial:]': privateMTStructure.m:534:9: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] snprintf(tbuffer, 10, "% 4u ", [[residue number] intValue]); /* residue number */ ^ privateMTStructure.m:534:9: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] privateMTStructure.m:549:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] snprintf(buffer+6,6,"% 5u",*serial); *serial = *serial + 1; ^ privateMTStructure.m:549:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] privateMTStructure.m: In function '-[MTStructure(Private) writePDBHeterogen:inChain:to:fromSerial:]': privateMTStructure.m:635:9: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] snprintf(tbuffer, 10, "% 4u ", [[residue number] intValue]); /* residue number */ ^ privateMTStructure.m:635:9: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] privateMTStructure.m:650:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] snprintf(buffer+6,6,"% 5u",*serial); *serial = *serial + 1; ^ privateMTStructure.m:650:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat=] privateMTStructure.m: In function '-[MTStructure(Private) backTransformation]': privateMTStructure.m:803:16: warning: unused variable 'tSINB' [-Wunused-variable] double tSINB = sin(abeta); ^ privateMTStructure.m:802:16: warning: unused variable 'tSINA' [-Wunused-variable] double tSINA = sin(aalpha); ^ gcc MTString.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTString.m.o gcc MTStream.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTStream.m.o gcc MTFileStream.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTFileStream.m.o MTFileStream.m: In function '+[MTFileStream isFileCompressed:]': MTFileStream.m:324:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(buffer,1,2,t_file); ^ gcc MTCompressedFileStream.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTCompressedFileStream.m.o gcc MTMatrix53.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTMatrix53.m.o gcc MTMatrix44.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTMatrix44.m.o gcc MTMatrix.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTMatrix.m.o gcc privateMTMatrix.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/privateMTMatrix.m.o gcc MTVector.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTVector.m.o gcc MTPDBParser.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTPDBParser.m.o MTPDBParser.m: In function '-[MTPDBParser(Private) readAtom:]': MTPDBParser.m:523:15: warning: variable 'occ' set but not used [-Wunused-but-set-variable] double x,y,z,occ,bfact; ^ MTPDBParser.m: In function '-[MTPDBParser(Private) readHetatom:]': MTPDBParser.m:711:15: warning: variable 'occ' set but not used [-Wunused-but-set-variable] double x,y,z,occ,bfact; ^ MTPDBParser.m: In function '-[MTPDBParser(Private) readModres:]': MTPDBParser.m:1416:12: warning: variable 'hname' set but not used [-Wunused-but-set-variable] NSString *hname; /* hetero name */ ^ MTPDBParser.m: In function '-[MTPDBParser(Private) readAtom:]': MTPDBParser.m:561:8: warning: array subscript is above array bounds [-Warray-bounds] rname[4]='\0'; ^ MTPDBParser.m:582:30: warning: array subscript is above array bounds [-Warray-bounds] for (i=0; i<4; i++) { segid[i]=buffer[i+72]; } /* 73 - 76 segment id */ ^ MTPDBParser.m:635:61: warning: 'segid[3]' may be used uninitialized in this function [-Wmaybe-uninitialized] if (segid[0] != ' ' || segid[1] != ' ' || segid[2] != ' ' || segid[3] != ' ') // left justified ^ MTPDBParser.m:638:4: warning: 'segid[2u]' may be used uninitialized in this function [-Wmaybe-uninitialized] [t_residue setSegid: [NSString stringWithFormat:@"%c%c%c%c", segid[0],segid[1],segid[2],segid[3] ]]; ^ MTPDBParser.m:638:4: warning: 'segid[1u]' may be used uninitialized in this function [-Wmaybe-uninitialized] MTPDBParser.m:638:4: warning: 'segid[0u]' may be used uninitialized in this function [-Wmaybe-uninitialized] MTPDBParser.m: In function '-[MTPDBParser(Private) readHetatom:]': MTPDBParser.m:787:30: warning: array subscript is above array bounds [-Warray-bounds] for (i=0; i<4; i++) { segid[i]=buffer[i+72]; } /* 73 - 76 segment id */ ^ MTPDBParser.m:828:61: warning: 'segid[3]' may be used uninitialized in this function [-Wmaybe-uninitialized] if (segid[0] != ' ' || segid[1] != ' ' || segid[2] != ' ' || segid[3] != ' ') // left justified ^ MTPDBParser.m:831:4: warning: 'segid[2u]' may be used uninitialized in this function [-Wmaybe-uninitialized] [t_residue setSegid: [NSString stringWithFormat:@"%c%c%c%c", segid[0],segid[1],segid[2],segid[3] ]]; ^ MTPDBParser.m:831:4: warning: 'segid[1u]' may be used uninitialized in this function [-Wmaybe-uninitialized] MTPDBParser.m:831:4: warning: 'segid[0u]' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc MTPairwiseStrxAlignment.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTPairwiseStrxAlignment.m.o MTPairwiseStrxAlignment.m: In function '-[MTPairwiseStrxAlignment optimize]': MTPairwiseStrxAlignment.m:244:17: warning: variable 'preverr' set but not used [-Wunused-but-set-variable] double sumerr, preverr,t; ^ MTPairwiseStrxAlignment.m:236:6: warning: variable 'maxaligned' set but not used [-Wunused-but-set-variable] int maxaligned=0; ^ In file included from MTPairwiseStrxAlignment.m:41:0: MTPairwiseStrxAlignment.m: At top level: blosum45.h:2:14: warning: 'substitutionMatrixBlosum45' defined but not used [-Wunused-variable] static float substitutionMatrixBlosum45[] = { ^ In file included from MTPairwiseStrxAlignment.m:42:0: blosum62.h:1:14: warning: 'substitutionMatrixBlosum62' defined but not used [-Wunused-variable] static float substitutionMatrixBlosum62[] = { ^ In file included from MTPairwiseStrxAlignment.m:43:0: blosum80.h:1:14: warning: 'substitutionMatrixBlosum80' defined but not used [-Wunused-variable] static float substitutionMatrixBlosum80[] = { ^ gcc MTPairwiseSequenceAlignment.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTPairwiseSequenceAlignment.m.o MTPairwiseSequenceAlignment.m: In function '-[MTPairwiseSequenceAlignment writeFastaToStream:]': MTPairwiseSequenceAlignment.m:930:6: warning: 'strx' may be used uninitialized in this function [-Wmaybe-uninitialized] if (strx && ch) ^ MTPairwiseSequenceAlignment.m:930:11: warning: 'ch' may be used uninitialized in this function [-Wmaybe-uninitialized] if (strx && ch) ^ gcc MTSubstitutionMatrix.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTSubstitutionMatrix.m.o gcc MTStructureFactory.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTStructureFactory.m.o gcc MTChainFactory.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTChainFactory.m.o gcc MTResidueFactory.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTResidueFactory.m.o gcc NSScanner+additions.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/NSScanner+additions.m.o gcc MTAtomFactory.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTAtomFactory.m.o gcc MTQuaternion.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTQuaternion.m.o classes=""; \ for object_file in ./obj/MolTalk.obj/MTAtom.m.o ./obj/MolTalk.obj/MTAlPos.m.o ./obj/MolTalk.obj/MTChain.m.o ./obj/MolTalk.obj/privateMTChain.m.o ./obj/MolTalk.obj/MTCoordinates.m.o ./obj/MolTalk.obj/MTResidue.m.o ./obj/MolTalk.obj/privateMTResidue.m.o ./obj/MolTalk.obj/MTSelection.m.o ./obj/MolTalk.obj/privateMTSelection.m.o ./obj/MolTalk.obj/MTStructure.m.o ./obj/MolTalk.obj/privateMTStructure.m.o ./obj/MolTalk.obj/MTString.m.o ./obj/MolTalk.obj/MTStream.m.o ./obj/MolTalk.obj/MTFileStream.m.o ./obj/MolTalk.obj/MTCompressedFileStream.m.o ./obj/MolTalk.obj/MTMatrix53.m.o ./obj/MolTalk.obj/MTMatrix44.m.o ./obj/MolTalk.obj/MTMatrix.m.o ./obj/MolTalk.obj/privateMTMatrix.m.o ./obj/MolTalk.obj/MTVector.m.o ./obj/MolTalk.obj/MTPDBParser.m.o ./obj/MolTalk.obj/MTPairwiseStrxAlignment.m.o ./obj/MolTalk.obj/MTPairwiseSequenceAlignment.m.o ./obj/MolTalk.obj/MTSubstitutionMatrix.m.o ./obj/MolTalk.obj/MTStructureFactory.m.o ./obj/MolTalk.obj/MTChainFactory.m.o ./obj/MolTalk.obj/MTResidueFactory.m.o ./obj/MolTalk.obj/NSScanner+additions.m.o ./obj/MolTalk.obj/MTAtomFactory.m.o ./obj/MolTalk.obj/MTQuaternion.m.o __dummy__; do \ if [ "$object_file" != "__dummy__" ]; then \ sym=`nm -Pg $object_file | sed -n -e '/^__objc_class_name_[A-Za-z0-9_.]* [^U]/ {s/^__objc_class_name_\([A-Za-z0-9_.]*\) [^U].*/\1/p;}'`; \ classes="$classes $sym"; \ fi; \ done; \ classlist=""; \ classarray=""; \ for f in $classes __dummy__ ; do \ if [ "$f" != "__dummy__" ]; then \ if [ "$classlist" = "" ]; then \ classlist="@\"$f\""; \ classarray="(\"$f\""; \ else \ classlist="$classlist, @\"$f\""; \ classarray="$classarray, \"$f\""; \ fi; \ fi; \ done; \ if [ "$classlist" = "" ]; then \ classlist="NULL"; \ classarray="()"; \ else \ classlist="$classlist, NULL"; \ classarray="$classarray)"; \ fi; \ echo "$classarray" > ./derived_src/MolTalk-class-list; \ echo "#include " > derived_src/NSFramework_MolTalk.m; \ echo "@interface NSFramework_MolTalk" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *)frameworkEnv;" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *)frameworkPath;" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_MolTalk.m; \ echo "@end" >> derived_src/NSFramework_MolTalk.m; \ echo "@implementation NSFramework_MolTalk" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *)frameworkEnv { return nil; }" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *)frameworkPath { return @\"/home/buildd/GNUstep/Library/Frameworks\"; }" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *)frameworkVersion { return @\"3\"; }" >> derived_src/NSFramework_MolTalk.m; \ echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_MolTalk.m;\ echo "@end" >> derived_src/NSFramework_MolTalk.m gcc derived_src/NSFramework_MolTalk.m -c -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep -o obj/MolTalk.obj/NSFramework_MolTalk.o \ gcc -shared -Wl,-soname,libMolTalk.so.3 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./MolTalk.framework/Versions/3/./libMolTalk.so.3.0.1 obj/MolTalk.obj/NSFramework_MolTalk.o obj/MolTalk.obj/MolTalk.c.o obj/MolTalk.obj/MTAtom.m.o obj/MolTalk.obj/MTAlPos.m.o obj/MolTalk.obj/MTChain.m.o obj/MolTalk.obj/privateMTChain.m.o obj/MolTalk.obj/MTCoordinates.m.o obj/MolTalk.obj/MTResidue.m.o obj/MolTalk.obj/privateMTResidue.m.o obj/MolTalk.obj/MTSelection.m.o obj/MolTalk.obj/privateMTSelection.m.o obj/MolTalk.obj/MTStructure.m.o obj/MolTalk.obj/privateMTStructure.m.o obj/MolTalk.obj/MTString.m.o obj/MolTalk.obj/MTStream.m.o obj/MolTalk.obj/MTFileStream.m.o obj/MolTalk.obj/MTCompressedFileStream.m.o obj/MolTalk.obj/MTMatrix53.m.o obj/MolTalk.obj/MTMatrix44.m.o obj/MolTalk.obj/MTMatrix.m.o obj/MolTalk.obj/privateMTMatrix.m.o obj/MolTalk.obj/MTVector.m.o obj/MolTalk.obj/MTPDBParser.m.o obj/MolTalk.obj/MTPairwiseStrxAlignment.m.o obj/MolTalk.obj/MTPairwiseSequenceAlignment.m.o obj/MolTalk.obj/MTSubstitutionMatrix.m.o obj/MolTalk.obj/MTStructureFactory.m.o obj/MolTalk.obj/MTChainFactory.m.o obj/MolTalk.obj/MTResidueFactory.m.o obj/MolTalk.obj/NSScanner+additions.m.o obj/MolTalk.obj/MTAtomFactory.m.o obj/MolTalk.obj/MTQuaternion.m.o -L/usr/local/lib -L/usr/lib -lm -lgnustep-base -lobjc && (cd ./MolTalk.framework/Versions/3/.; rm -f libMolTalk.so; if [ "libMolTalk.so.3" != "libMolTalk.so.3.0.1" ]; then rm -f libMolTalk.so.3; ln -s libMolTalk.so.3.0.1 libMolTalk.so.3; fi; ln -s libMolTalk.so.3 libMolTalk.so; ) || rm -f ./MolTalk.framework/Versions/3/./libMolTalk.so.3.0.1 ; \ (cd ./MolTalk.framework/Versions/3/.; \ rm -f MolTalk; \ ln -s libMolTalk.so MolTalk) \ for f in Resources/ScriptingInfo.plist; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./MolTalk.framework/Versions/3/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done (echo "{"; echo ' NOTE = "Automatically generated, do not edit!";'; \ echo " NSExecutable = \"MolTalk\";"; \ echo " NSMainNibFile = \"\";"; \ echo " NSPrincipalClass = \"MolTalk\";"; \ echo " Classes = "; \ cat ./derived_src/MolTalk-class-list; \ echo " ;"; \ echo "}") >MolTalk.framework/Versions/3/Resources/Info-gnustep.plist if [ -r "MolTalkInfo.plist" ]; then \ plmerge MolTalk.framework/Versions/3/Resources/Info-gnustep.plist MolTalkInfo.plist; \ fi cd ./MolTalk.framework/.; \ rm -f MolTalk libMolTalk.so; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./MolTalk short` \ MolTalk; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./libMolTalk.so short` \ libMolTalk.so make[1]: Leaving directory `/build/buildd/adun.app-0.81/MolTalk' Making all in UL/ ... make[1]: Entering directory `/build/buildd/adun.app-0.81/UL' Making all in XMLLib ... make[2]: Entering directory `/build/buildd/adun.app-0.81/UL/XMLLib' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for library libXMLLib... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/libXMLLib.obj/ gcc XMLDocumentRoot.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/XMLDocumentRoot.m.o gcc XMLNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/XMLNode.m.o XMLNode.m: In function '-[XMLNode nextSibling]': XMLNode.m:153:2: warning: multiple methods named '-childCount' found [enabled by default] if(index == ([parent childCount] - 1)) ^ In file included from /usr/include/GNUstep/Foundation/NSXMLDocument.h:29:0, from /usr/include/GNUstep/Foundation/Foundation.h:133, from XMLNode.h:28, from XMLNode.m:25: /usr/include/GNUstep/Foundation/NSXMLNode.h:219:1: note: using '-(NSUInteger)childCount' - (NSUInteger) childCount; ^ /usr/include/GNUstep/Foundation/NSXMLNode.h:219:1: note: also found '-(NSUInteger)childCount' In file included from XMLNode.m:25:0: XMLNode.h:120:1: note: also found '-(int)childCount' - (int) childCount; ^ gcc ULParameterNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULParameterNode.m.o gcc ULTopologyNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULTopologyNode.m.o gcc ULClassNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULClassNode.m.o gcc ULInteractionNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULInteractionNode.m.o gcc ULParameterTree.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULParameterTree.m.o gcc ULMolecularLibraryNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULMolecularLibraryNode.m.o gcc ULMoleculeClassNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULMoleculeClassNode.m.o gcc ULMoleculeNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULMoleculeNode.m.o gcc ULConnectivityNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULConnectivityNode.m.o gcc ULAtomListNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULAtomListNode.m.o gcc ULMolecularLibraryTree.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULMolecularLibraryTree.m.o gcc -shared -Wl,-soname,libXMLLib.so.0 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./obj/libXMLLib.so.0.1 obj/libXMLLib.obj/XMLDocumentRoot.m.o obj/libXMLLib.obj/XMLNode.m.o obj/libXMLLib.obj/ULParameterNode.m.o obj/libXMLLib.obj/ULTopologyNode.m.o obj/libXMLLib.obj/ULClassNode.m.o obj/libXMLLib.obj/ULInteractionNode.m.o obj/libXMLLib.obj/ULParameterTree.m.o obj/libXMLLib.obj/ULMolecularLibraryNode.m.o obj/libXMLLib.obj/ULMoleculeClassNode.m.o obj/libXMLLib.obj/ULMoleculeNode.m.o obj/libXMLLib.obj/ULConnectivityNode.m.o obj/libXMLLib.obj/ULAtomListNode.m.o obj/libXMLLib.obj/ULMolecularLibraryTree.m.o -L/build/buildd/adun.app-0.81/Kernel/AdunKernel/AdunKernel.framework/Versions/Current -L/usr/local/lib -L/usr/lib -lAdunKernel -lgnustep-base -lobjc && (cd ./obj; rm -f libXMLLib.so; if [ "libXMLLib.so.0" != "libXMLLib.so.0.1" ]; then rm -f libXMLLib.so.0; ln -s libXMLLib.so.0.1 libXMLLib.so.0; fi; ln -s libXMLLib.so.0 libXMLLib.so; ) make[2]: Leaving directory `/build/buildd/adun.app-0.81/UL/XMLLib' Making all in ULFramework ... make[2]: Entering directory `/build/buildd/adun.app-0.81/UL/ULFramework' Making build-headers for framework ULFramework... /usr/share/GNUstep/Makefiles/mkinstalldirs ULFramework.framework/Versions/0/Headers /usr/bin/install -c -p -m 644 ULFrameworkFunctions.h ULFramework.framework/Versions/0/Headers/ULFrameworkFunctions.h /usr/bin/install -c -p -m 644 ULFrameworkDefinitions.h ULFramework.framework/Versions/0/Headers/ULFrameworkDefinitions.h /usr/bin/install -c -p -m 644 PDBConfigurationBuilder.h ULFramework.framework/Versions/0/Headers/PDBConfigurationBuilder.h /usr/bin/install -c -p -m 644 ULConfigurationBuilder.h ULFramework.framework/Versions/0/Headers/ULConfigurationBuilder.h /usr/bin/install -c -p -m 644 ULDatabaseIndex.h ULFramework.framework/Versions/0/Headers/ULDatabaseIndex.h /usr/bin/install -c -p -m 644 ULDatabaseSimulationIndex.h ULFramework.framework/Versions/0/Headers/ULDatabaseSimulationIndex.h /usr/bin/install -c -p -m 644 ULDatabaseInterface.h ULFramework.framework/Versions/0/Headers/ULDatabaseInterface.h /usr/bin/install -c -p -m 644 ULFileSystemDatabaseBackend.h ULFramework.framework/Versions/0/Headers/ULFileSystemDatabaseBackend.h /usr/bin/install -c -p -m 644 ULInteractionsBuilder.h ULFramework.framework/Versions/0/Headers/ULInteractionsBuilder.h /usr/bin/install -c -p -m 644 ULIOManager.h ULFramework.framework/Versions/0/Headers/ULIOManager.h /usr/bin/install -c -p -m 644 ULMerger.h ULFramework.framework/Versions/0/Headers/ULMerger.h /usr/bin/install -c -p -m 644 ULProcess.h ULFramework.framework/Versions/0/Headers/ULProcess.h /usr/bin/install -c -p -m 644 ULProcessManager.h ULFramework.framework/Versions/0/Headers/ULProcessManager.h /usr/bin/install -c -p -m 644 ULServerManager.h ULFramework.framework/Versions/0/Headers/ULServerManager.h /usr/bin/install -c -p -m 644 ULAnalysisManager.h ULFramework.framework/Versions/0/Headers/ULAnalysisManager.h /usr/bin/install -c -p -m 644 ULSimpleMergerDelegate.h ULFramework.framework/Versions/0/Headers/ULSimpleMergerDelegate.h /usr/bin/install -c -p -m 644 ULSystem.h ULFramework.framework/Versions/0/Headers/ULSystem.h /usr/bin/install -c -p -m 644 ULSystemBuilder.h ULFramework.framework/Versions/0/Headers/ULSystemBuilder.h /usr/bin/install -c -p -m 644 ULSystemController.h ULFramework.framework/Versions/0/Headers/ULSystemController.h /usr/bin/install -c -p -m 644 ULTopologyFrameBuilder.h ULFramework.framework/Versions/0/Headers/ULTopologyFrameBuilder.h /usr/bin/install -c -p -m 644 ULConfigurationPlugin.h ULFramework.framework/Versions/0/Headers/ULConfigurationPlugin.h /usr/bin/install -c -p -m 644 ULMergerDelegate.h ULFramework.framework/Versions/0/Headers/ULMergerDelegate.h /usr/bin/install -c -p -m 644 ULServerInterface.h ULFramework.framework/Versions/0/Headers/ULServerInterface.h /usr/bin/install -c -p -m 644 ULMenuExtensions.h ULFramework.framework/Versions/0/Headers/ULMenuExtensions.h /usr/bin/install -c -p -m 644 ULTemplate.h ULFramework.framework/Versions/0/Headers/ULTemplate.h /usr/bin/install -c -p -m 644 ULAnalysisPlugin.h ULFramework.framework/Versions/0/Headers/ULAnalysisPlugin.h /usr/bin/install -c -p -m 644 ULFramework.h ULFramework.framework/Versions/0/Headers/ULFramework.h /usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \ touch derived_src/.stamp /usr/share/GNUstep/Makefiles/mkinstalldirs ULFramework.framework/Versions/0/Resources cd ./ULFramework.framework/Versions; \ rm -f Current; \ ln -s 0 Current cd ./ULFramework.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "ULFramework" ]; then \ rm -f ./ULFramework; \ ln -s ../ULFramework.framework/Headers \ ./ULFramework; \ fi cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for framework ULFramework... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/ULFramework.obj/ gcc ULFrameworkFunctions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULFrameworkFunctions.m.o gcc PDBConfigurationBuilder.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/PDBConfigurationBuilder.m.o PDBConfigurationBuilder.m: In function '-[PDBConfigurationBuilder _processChain:section:selection:atomMatrix:]': PDBConfigurationBuilder.m:167:14: warning: variable 'residueName' set but not used [-Wunused-but-set-variable] id residue, residueName, residueDescription, atom; ^ PDBConfigurationBuilder.m: In function '-[PDBConfigurationBuilder initWithMoleculeAtPath:]': PDBConfigurationBuilder.m:435:12: warning: unused variable 'temp' [-Wunused-variable] NSString* temp; ^ PDBConfigurationBuilder.m:433:12: warning: variable 'pathExtension' set but not used [-Wunused-but-set-variable] NSString* pathExtension; ^ PDBConfigurationBuilder.m: In function '-[PDBStructureModifier init]': PDBConfigurationBuilder.m:866:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ PDBConfigurationBuilder.m: In function '-[PDBStructureModifier modifyStructureForEnzymix:]': PDBConfigurationBuilder.m:931:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(chain = [chainEnum nextObject]) ^ PDBConfigurationBuilder.m:934:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(residue = [residueEnum nextObject]) ^ PDBConfigurationBuilder.m: In function '-[PDBStructureModifier removeEnzymixStructureModifications:]': PDBConfigurationBuilder.m:960:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(chain = [chainEnum nextObject]) ^ PDBConfigurationBuilder.m:963:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(residue = [residueEnum nextObject]) ^ PDBConfigurationBuilder.m:957:10: warning: unused variable 'atom' [-Wunused-variable] MTAtom* atom; ^ PDBConfigurationBuilder.m: In function '-[PDBStructureModifier _renumberHeterogensAndSolvent:]': PDBConfigurationBuilder.m:987:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(chain = [chainEnum nextObject]) ^ PDBConfigurationBuilder.m:1019:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(residue = [residueEnum nextObject]) ^ PDBConfigurationBuilder.m:1021:5: warning: 'MTResidue' may not respond to '-setNumber:' [enabled by default] [residue setNumber: [NSNumber numberWithInt: residueNumber]]; ^ PDBConfigurationBuilder.m:1021:5: warning: (Messages without a matching method signature [enabled by default] PDBConfigurationBuilder.m:1021:5: warning: will be assumed to return 'id' and accept [enabled by default] PDBConfigurationBuilder.m:1021:5: warning: '...' as arguments.) [enabled by default] PDBConfigurationBuilder.m: In function '-[PDBStructureModifier _addCharmmTermini:]': PDBConfigurationBuilder.m:1056:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(chain = [chainEnum nextObject]) ^ PDBConfigurationBuilder.m:1076:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(atomName = [atomNameEnum nextObject]) ^ PDBConfigurationBuilder.m:1106:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(residue = [residueEnum nextObject]) ^ PDBConfigurationBuilder.m:1109:5: warning: 'MTResidue' may not respond to '-setNumber:' [enabled by default] [residue setNumber: [NSNumber numberWithInt: residueNumber + 1]]; ^ PDBConfigurationBuilder.m:1119:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(atom = [atomEnum nextObject]) ^ PDBConfigurationBuilder.m:1141:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(chain = [chainEnum nextObject]) ^ PDBConfigurationBuilder.m:1157:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(atomName = [atomNameEnum nextObject]) ^ PDBConfigurationBuilder.m:1186:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(atom = [atomEnum nextObject]) ^ PDBConfigurationBuilder.m: In function '-[PDBStructureModifier modifyStructureForCharmm:]': PDBConfigurationBuilder.m:1222:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(chain = [chainEnum nextObject]) ^ PDBConfigurationBuilder.m:1225:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(residue = [residueEnum nextObject]) ^ PDBConfigurationBuilder.m: In function '-[PDBStructureModifier removeCharmmStructureModifications:]': PDBConfigurationBuilder.m:1263:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(chain = [chainEnum nextObject]) ^ PDBConfigurationBuilder.m:1266:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(residue = [residueEnum nextObject]) ^ PDBConfigurationBuilder.m:1260:10: warning: unused variable 'atom' [-Wunused-variable] MTAtom* atom; ^ PDBConfigurationBuilder.m: In function '-[PDBConfigurationBuilder _structureObjectForPDB:]': PDBConfigurationBuilder.m:64:2: warning: 'molStruct' may be used uninitialized in this function [-Wmaybe-uninitialized] return molStruct; ^ PDBConfigurationBuilder.m: In function '-[PDBConfigurationBuilder _processChain:section:selection:atomMatrix:]': PDBConfigurationBuilder.m:224:8: warning: 'residueEnum' may be used uninitialized in this function [-Wmaybe-uninitialized] while((residue = [residueEnum nextObject])) ^ gcc ULConfigurationBuilder.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULConfigurationBuilder.m.o ULConfigurationBuilder.m: In function '+[ULConfigurationBuilder builderForMoleculeAtPath:]': ULConfigurationBuilder.m:32:12: warning: variable 'pathExtension' set but not used [-Wunused-but-set-variable] NSString* pathExtension; ^ gcc ULDatabaseIndex.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULDatabaseIndex.m.o ULDatabaseIndex.m: In function '-[ULDatabaseIndex removeOutputReferenceToObjectWithId:fromObjectWithId:]': ULDatabaseIndex.m:401:2: warning: overflow in implicit constant conversion [-Woverflow] for(position = NSNotFound, i=0; i<(int)[outputReferences count]; i++) ^ ULDatabaseIndex.m: In function '-[ULDatabaseIndex removeObjectsWithIds:error:]': ULDatabaseIndex.m:378:2: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized] return retval; ^ ULDatabaseIndex.m: In function '-[ULDatabaseIndex removeOutputReferenceToObjectWithId:fromObjectWithId:]': ULDatabaseIndex.m:396:4: warning: 'ident' may be used uninitialized in this function [-Wmaybe-uninitialized] ident]]; ^ In file included from /usr/include/GNUstep/Foundation/NSDebug.h:39:0, from /usr/include/GNUstep/Foundation/Foundation.h:36, from ../ULFramework/ULDatabaseIndex.h:28, from ULDatabaseIndex.m:25: ULDatabaseIndex.m: In function '-[ULDatabaseIndex initWithCoder:]': /usr/include/GNUstep/GNUstepBase/NSDebug+GNUstepBase.h:114:10: warning: 'date' may be used uninitialized in this function [-Wmaybe-uninitialized] NSLog(format , ## args); } while (0) ^ ULDatabaseIndex.m:551:19: note: 'date' was declared here id lastSaveDate, date; ^ In file included from /usr/include/GNUstep/Foundation/NSDebug.h:39:0, from /usr/include/GNUstep/Foundation/Foundation.h:36, from ../ULFramework/ULDatabaseIndex.h:28, from ULDatabaseIndex.m:25: /usr/include/GNUstep/GNUstepBase/NSDebug+GNUstepBase.h:114:10: warning: 'lastSaveDate' may be used uninitialized in this function [-Wmaybe-uninitialized] NSLog(format , ## args); } while (0) ^ ULDatabaseIndex.m:551:5: note: 'lastSaveDate' was declared here id lastSaveDate, date; ^ gcc ULDatabaseSimulationIndex.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULDatabaseSimulationIndex.m.o gcc ULDatabaseInterface.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULDatabaseInterface.m.o gcc ULFileSystemDatabaseBackend.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULFileSystemDatabaseBackend.m.o ULFileSystemDatabaseBackend.m: In function '-[ULFileSystemDatabaseBackend _saveIndex:ofClass:]': ULFileSystemDatabaseBackend.m:113:2: warning: 'file' may be used uninitialized in this function [-Wmaybe-uninitialized] [data writeToFile: file atomically: NO]; ^ ULFileSystemDatabaseBackend.m: In function '-[ULFileSystemDatabaseBackend updateMetadataForObject:inSchema:error:]': ULFileSystemDatabaseBackend.m:845:7: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized] BOOL retval; ^ ULFileSystemDatabaseBackend.m: In function '-[ULFileSystemDatabaseBackend removeObjectOfClass:withID:fromSchema:error:]': ULFileSystemDatabaseBackend.m:995:7: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized] BOOL retval; ^ ULFileSystemDatabaseBackend.m: In function '-[ULFileSystemDatabaseBackend removeObjectsOfClass:withIDs:fromSchema:error:]': ULFileSystemDatabaseBackend.m:1077:5: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized] if(retval) ^ gcc ULInteractionsBuilder.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULInteractionsBuilder.m.o gcc ULIOManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULIOManager.m.o ULIOManager.m: In function '-[ULIOManager _importQuickStartFiles]': ULIOManager.m:64:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(file = [contentsEnum nextObject]) ^ ULIOManager.m: In function '-[NSFileManager(ULExtensions) createDirectoryAtPath:attributes:error:]': ULIOManager.m:389:12: warning: variable 'containingDir' set but not used [-Wunused-but-set-variable] NSString* containingDir; ^ gcc ULMerger.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULMerger.m.o ULMerger.m: In function '-[ULMerger mergeTopologyFrame:withConfiguration:error:userInfo:]': ULMerger.m:159:49: warning: variable 'indexes' set but not used [-Wunused-but-set-variable] NSMutableArray* confAtomList, *frameAtomList, *indexes; ^ gcc ULProcess.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULProcess.m.o ULProcess.m: In function '-[ULProcess setSimulationData:]': ULProcess.m:225:12: warning: variable 'ident' set but not used [-Wunused-but-set-variable] NSString* ident; ^ ULProcess.m: In function '-[ULProcess setControllerResults:]': ULProcess.m:215:4: warning: 'dataSet' is used uninitialized in this function [-Wuninitialized] if(dataSet != results) ^ gcc ULProcessManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULProcessManager.m.o ULProcessManager.m: In function '-[ULProcessManager optionsForCommand:process:]': ULProcessManager.m:811:4: warning: 'proxy' may be used uninitialized in this function [-Wmaybe-uninitialized] process: process]; ^ ULProcessManager.m: In function '-[ULProcessManager validCommandsForProcess:]': ULProcessManager.m:825:2: warning: 'proxy' may be used uninitialized in this function [-Wmaybe-uninitialized] return [proxy validCommandsForProcess: process]; ^ ULProcessManager.m: In function '-[ULProcessManager execute:error:process:]': ULProcessManager.m:797:2: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized] return result; ^ ULProcessManager.m:793:6: warning: 'proxy' may be used uninitialized in this function [-Wmaybe-uninitialized] object: [proxy connectionForProxy]]; ^ gcc ULServerManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULServerManager.m.o ULServerManager.m: In function '-[ULServerManager(ConnectionMethods) _handleConnectionDidDie:]': ULServerManager.m:84:23: warning: unused variable 'errorInfo' [-Wunused-variable] NSMutableDictionary* errorInfo; ^ ULServerManager.m: In function '-[ULServerManager(ConnectionMethods) _removeConnectionToHost:]': ULServerManager.m:292:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(proxy = [proxyEnum nextObject]) ^ ULServerManager.m:265:5: warning: variable 'server' set but not used [-Wunused-but-set-variable] id server, proxy; ^ ULServerManager.m: In function '-[ULServerManager init]': ULServerManager.m:338:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULServerManager.m:351:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(host = [hostsEnum nextObject]) ^ ULServerManager.m: In function '-[ULServerManager dealloc]': ULServerManager.m:378:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(host = [connectedHostsEnum nextObject]) ^ ULServerManager.m: In function '-[ULServerManager checkPortTimeoutException:]': ULServerManager.m:506:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(connection = [connectionEnum nextObject]) ^ gcc ULAnalysisManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULAnalysisManager.m.o ULAnalysisManager.m: In function '-[ULAnalysisManager _addPluginsInDirectory:]': ULAnalysisManager.m:83:66: warning: unused variable 'resourceFilename' [-Wunused-variable] NSString *contentObject, *path, *pluginName, *pluginOutputDir, *resourceFilename; ^ ULAnalysisManager.m:83:48: warning: unused variable 'pluginOutputDir' [-Wunused-variable] NSString *contentObject, *path, *pluginName, *pluginOutputDir, *resourceFilename; ^ ULAnalysisManager.m:83:35: warning: unused variable 'pluginName' [-Wunused-variable] NSString *contentObject, *path, *pluginName, *pluginOutputDir, *resourceFilename; ^ ULAnalysisManager.m:82:32: warning: unused variable 'pluginEnum' [-Wunused-variable] NSEnumerator *pluginDirEnum, *pluginEnum; ^ ULAnalysisManager.m:142:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ ULAnalysisManager.m: In function '-[ULAnalysisManager locationOfPlugin:]': ULAnalysisManager.m:581:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(directory = [pluginDirEnum nextObject]) ^ gcc ULSimpleMergerDelegate.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULSimpleMergerDelegate.m.o ULSimpleMergerDelegate.m: In function '-[ULSimpleMergerDelegate _updateConfiguration]': ULSimpleMergerDelegate.m:109:4: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] inIndexRange: NULL]; ^ ULSimpleMergerDelegate.m:109:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSimpleMergerDelegate.m:111:4: warning: passing argument 1 of 'removeObjectsFromIndices:numIndices:' from incompatible pointer type [enabled by default] removeObjectsFromIndices: buffer numIndices: [totalMissingAtoms count]]; ^ ULSimpleMergerDelegate.m:111:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSimpleMergerDelegate.m:113:4: warning: passing argument 1 of 'removeObjectsFromIndices:numIndices:' from incompatible pointer type [enabled by default] removeObjectsFromIndices: buffer numIndices: [totalMissingAtoms count]]; ^ ULSimpleMergerDelegate.m:113:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSimpleMergerDelegate.m: In function '-[ULSimpleMergerDelegate finalise]': ULSimpleMergerDelegate.m:215:4: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] inIndexRange: NULL]; ^ ULSimpleMergerDelegate.m:215:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSimpleMergerDelegate.m:216:2: warning: passing argument 1 of 'removeObjectsFromIndices:numIndices:' from incompatible pointer type [enabled by default] [bondedAtomsList removeObjectsFromIndices: buffer numIndices: [totalMissingAtoms count]]; ^ ULSimpleMergerDelegate.m:216:2: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' gcc ULSystem.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULSystem.m.o ULSystem.m: In function '-[ULSystem _decodeArrayOfDoublesForKey:usingCoder:]': ULSystem.m:183:2: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] bytes = (double*)[decoder decodeBytesForKey: key returnedLength: &bytesLength]; ^ ULSystem.m:183:2: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSystem.m: In function '-[ULSystem _decodeBondedAtomsWithCoder:]': ULSystem.m:213:7: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] returnedLength: &length]; ^ ULSystem.m:213:7: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSystem.m:216:6: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] returnedLength: &length]; ^ ULSystem.m:216:6: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSystem.m: In function '-[ULSystem _decodeIndexArrayForKey:usingCoder:]': ULSystem.m:251:2: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] totalRangeArray = (NSRange*)[decoder decodeBytesForKey: key returnedLength: &length]; ^ ULSystem.m:251:2: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSystem.m:255:5: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] returnedLength: &length]; ^ ULSystem.m:255:5: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' gcc ULSystemBuilder.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULSystemBuilder.m.o ULSystemBuilder.m: In function '+[ULSystemBuilder initialize]': ULSystemBuilder.m:32:5: warning: unused variable 'debugLevels' [-Wunused-variable] id debugLevels; ^ gcc ULSystemController.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULSystemController.m.o gcc ULMenuExtensions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULMenuExtensions.m.o gcc ULTemplate.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULTemplate.m.o ULTemplate.m: In function '-[ULTemplate validateTemplate:]': ULTemplate.m:593:11: warning: variable 'names' set but not used [-Wunused-but-set-variable] NSArray* names; ^ ULTemplate.m: In function '-[ULTemplate(PrivateObjectAdditions) _addObjectTemplate:withName:toSection:]': ULTemplate.m:168:5: warning: 'className' may be used uninitialized in this function [-Wmaybe-uninitialized] [template objectForKey: className]]; ^ gcc ULTopologyFrameBuilder.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULTopologyFrameBuilder.m.o gcc ULURLDownload.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULURLDownload.m.o classes=""; \ for object_file in ./obj/ULFramework.obj/ULFrameworkFunctions.m.o ./obj/ULFramework.obj/PDBConfigurationBuilder.m.o ./obj/ULFramework.obj/ULConfigurationBuilder.m.o ./obj/ULFramework.obj/ULDatabaseIndex.m.o ./obj/ULFramework.obj/ULDatabaseSimulationIndex.m.o ./obj/ULFramework.obj/ULDatabaseInterface.m.o ./obj/ULFramework.obj/ULFileSystemDatabaseBackend.m.o ./obj/ULFramework.obj/ULInteractionsBuilder.m.o ./obj/ULFramework.obj/ULIOManager.m.o ./obj/ULFramework.obj/ULMerger.m.o ./obj/ULFramework.obj/ULProcess.m.o ./obj/ULFramework.obj/ULProcessManager.m.o ./obj/ULFramework.obj/ULServerManager.m.o ./obj/ULFramework.obj/ULAnalysisManager.m.o ./obj/ULFramework.obj/ULSimpleMergerDelegate.m.o ./obj/ULFramework.obj/ULSystem.m.o ./obj/ULFramework.obj/ULSystemBuilder.m.o ./obj/ULFramework.obj/ULSystemController.m.o ./obj/ULFramework.obj/ULMenuExtensions.m.o ./obj/ULFramework.obj/ULTemplate.m.o ./obj/ULFramework.obj/ULTopologyFrameBuilder.m.o ./obj/ULFramework.obj/ULURLDownload.m.o __dummy__; do \ if [ "$object_file" != "__dummy__" ]; then \ sym=`nm -Pg $object_file | sed -n -e '/^__objc_class_name_[A-Za-z0-9_.]* [^U]/ {s/^__objc_class_name_\([A-Za-z0-9_.]*\) [^U].*/\1/p;}'`; \ classes="$classes $sym"; \ fi; \ done; \ classlist=""; \ classarray=""; \ for f in $classes __dummy__ ; do \ if [ "$f" != "__dummy__" ]; then \ if [ "$classlist" = "" ]; then \ classlist="@\"$f\""; \ classarray="(\"$f\""; \ else \ classlist="$classlist, @\"$f\""; \ classarray="$classarray, \"$f\""; \ fi; \ fi; \ done; \ if [ "$classlist" = "" ]; then \ classlist="NULL"; \ classarray="()"; \ else \ classlist="$classlist, NULL"; \ classarray="$classarray)"; \ fi; \ echo "$classarray" > ./derived_src/ULFramework-class-list; \ echo "#include " > derived_src/NSFramework_ULFramework.m; \ echo "@interface NSFramework_ULFramework" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *)frameworkEnv;" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *)frameworkPath;" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_ULFramework.m; \ echo "@end" >> derived_src/NSFramework_ULFramework.m; \ echo "@implementation NSFramework_ULFramework" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *)frameworkEnv { return nil; }" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *)frameworkPath { return @\"/home/buildd/GNUstep/Library/Frameworks\"; }" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *)frameworkVersion { return @\"0\"; }" >> derived_src/NSFramework_ULFramework.m; \ echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_ULFramework.m;\ echo "@end" >> derived_src/NSFramework_ULFramework.m gcc derived_src/NSFramework_ULFramework.m -c -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/UL/XMLLib -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep -o obj/ULFramework.obj/NSFramework_ULFramework.o \ gcc -shared -Wl,-soname,libULFramework.so.0 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./ULFramework.framework/Versions/0/./libULFramework.so.0.6 obj/ULFramework.obj/NSFramework_ULFramework.o obj/ULFramework.obj/ULFrameworkFunctions.m.o obj/ULFramework.obj/PDBConfigurationBuilder.m.o obj/ULFramework.obj/ULConfigurationBuilder.m.o obj/ULFramework.obj/ULDatabaseIndex.m.o obj/ULFramework.obj/ULDatabaseSimulationIndex.m.o obj/ULFramework.obj/ULDatabaseInterface.m.o obj/ULFramework.obj/ULFileSystemDatabaseBackend.m.o obj/ULFramework.obj/ULInteractionsBuilder.m.o obj/ULFramework.obj/ULIOManager.m.o obj/ULFramework.obj/ULMerger.m.o obj/ULFramework.obj/ULProcess.m.o obj/ULFramework.obj/ULProcessManager.m.o obj/ULFramework.obj/ULServerManager.m.o obj/ULFramework.obj/ULAnalysisManager.m.o obj/ULFramework.obj/ULSimpleMergerDelegate.m.o obj/ULFramework.obj/ULSystem.m.o obj/ULFramework.obj/ULSystemBuilder.m.o obj/ULFramework.obj/ULSystemController.m.o obj/ULFramework.obj/ULMenuExtensions.m.o obj/ULFramework.obj/ULTemplate.m.o obj/ULFramework.obj/ULTopologyFrameBuilder.m.o obj/ULFramework.obj/ULURLDownload.m.o -L../XMLLib/obj -L/build/buildd/adun.app-0.81/Kernel/AdunKernel/AdunKernel.framework/Versions/Current -L/build/buildd/adun.app-0.81/MolTalk/MolTalk.framework/Versions/Current -L/usr/local/lib -L/usr/lib -lAdunKernel -lMolTalk -lXMLLib -lgsl -lgslcblas -lm -lgnustep-base -lobjc && (cd ./ULFramework.framework/Versions/0/.; rm -f libULFramework.so; if [ "libULFramework.so.0" != "libULFramework.so.0.6" ]; then rm -f libULFramework.so.0; ln -s libULFramework.so.0.6 libULFramework.so.0; fi; ln -s libULFramework.so.0 libULFramework.so; ) || rm -f ./ULFramework.framework/Versions/0/./libULFramework.so.0.6 ; \ (cd ./ULFramework.framework/Versions/0/.; \ rm -f ULFramework; \ ln -s libULFramework.so ULFramework) \ for f in Resources/ScriptingInfo.plist Resources/objectTemplates.plist Resources/pdbBuilderOptions.plist Resources/pdbNameMap.plist Resources/iupacPdbMap.plist Resources/Version Resources/ForceFields; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./ULFramework.framework/Versions/0/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done (echo "{"; echo ' NOTE = "Automatically generated, do not edit!";'; \ echo " NSExecutable = \"ULFramework\";"; \ echo " NSMainNibFile = \"\";"; \ echo " NSPrincipalClass = \"ULFramework\";"; \ echo " Classes = "; \ cat ./derived_src/ULFramework-class-list; \ echo " ;"; \ echo "}") >ULFramework.framework/Versions/0/Resources/Info-gnustep.plist if [ -r "ULFrameworkInfo.plist" ]; then \ plmerge ULFramework.framework/Versions/0/Resources/Info-gnustep.plist ULFrameworkInfo.plist; \ fi cd ./ULFramework.framework/.; \ rm -f ULFramework libULFramework.so; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./ULFramework short` \ ULFramework; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./libULFramework.so short` \ libULFramework.so make[2]: Leaving directory `/build/buildd/adun.app-0.81/UL/ULFramework' Making all in AdunServer ... make[2]: Entering directory `/build/buildd/adun.app-0.81/UL/AdunServer' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for tool AdunServer... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/AdunServer.obj/ gcc AdServer.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I/build/buildd/adun.app-0.81/Kernel -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/AdunServer.obj/AdServer.m.o AdServer.m: In function '-[AdServer(RemoteSimulationManagement) startSimulation:]': AdServer.m:323:18: warning: unused variable 'arguments' [-Wunused-variable] NSMutableArray* arguments; ^ AdServer.m:321:11: warning: unused variable 'error' [-Wunused-variable] NSError* error = nil; ^ AdServer.m: In function '-[AdServer(RemoteSimulationManagement) reconnectProcess:]': AdServer.m:424:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(message = [messageEnum nextObject]) ^ AdServer.m: In function '-[AdServer _redirectOutput]': AdServer.m:161:9: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result] freopen([logFile cString], "w", stderr); ^ gcc main.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I/build/buildd/adun.app-0.81/Kernel -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/AdunServer.obj/main.m.o main.m: In function 'main': main.m:32:5: warning: variable 'server' set but not used [-Wunused-but-set-variable] id server; ^ gcc -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -fgnu-runtime -o obj/AdunServer \ ./obj/AdunServer.obj/AdServer.m.o ./obj/AdunServer.obj/main.m.o \ -L/build/buildd/adun.app-0.81/MolTalk/MolTalk.framework/Versions/Current -L/build/buildd/adun.app-0.81/Kernel/AdunKernel/AdunKernel.framework/Versions/Current/ -L/build/buildd/adun.app-0.81/Kernel/Base/obj -L../ULFramework/ULFramework.framework/Versions/Current -L../XMLLib/obj -L/usr/local/lib -L/usr/lib -lXMLLib -lULFramework -ladun_base -lAdunKernel -lMolTalk -lgnustep-base -lobjc -lm make[2]: Leaving directory `/build/buildd/adun.app-0.81/UL/AdunServer' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for app UL... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/UL.obj/ /usr/share/GNUstep/Makefiles/mkinstalldirs UL.app/. gcc ViewController.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ViewController.m.o ViewController.m: In function '-[ViewController init]': ViewController.m:162:5: warning: unused variable 'icon' [-Wunused-variable] id icon; ^ ViewController.m: In function '-[ViewController awakeFromNib]': ViewController.m:252:20: warning: variable 'ioManager' set but not used [-Wunused-but-set-variable] id item, columns, ioManager; ^ ViewController.m:252:11: warning: unused variable 'columns' [-Wunused-variable] id item, columns, ioManager; ^ ViewController.m:252:5: warning: unused variable 'item' [-Wunused-variable] id item, columns, ioManager; ^ ViewController.m:250:10: warning: unused variable 'mainMenu' [-Wunused-variable] NSMenu* mainMenu; ^ ViewController.m: In function '-[ViewController applicationDidFinishLaunching:]': ViewController.m:345:23: warning: unused variable 'userInfo' [-Wunused-variable] NSMutableDictionary* userInfo; ^ ViewController.m: In function '-[ViewController application:openFile:]': ViewController.m:400:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ ViewController.m: In function '-[ViewController handleProcessReconnectionError:]': ViewController.m:503:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(process = [processEnum nextObject]) ^ ViewController.m: In function '-[ViewController validateSimulationCommand:]': ViewController.m:636:5: warning: unused variable 'selectedItem' [-Wunused-variable] id selectedItem; ^ ViewController.m: In function '-[ViewController validateMenuItem:]': ViewController.m:672:5: warning: unused variable 'object' [-Wunused-variable] id object, objectType; ^ ViewController.m: In function '-[ViewController _displayFileLinux:]': ViewController.m:754:10: warning: variable 'task' set but not used [-Wunused-but-set-variable] NSTask* task; ^ ViewController.m: In function '-[ViewController _displayFileOSX:]': ViewController.m:778:10: warning: variable 'task' set but not used [-Wunused-but-set-variable] NSTask* task; ^ ViewController.m: In function '-[ViewController _viewLog:]': ViewController.m:804:12: warning: unused variable 'string' [-Wunused-variable] NSString* string; ^ ViewController.m: In function '-[ViewController init]': ViewController.m:192:10: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result] freopen([logFile cString], "w", stderr); ^ gcc ULSimulationCreator.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULSimulationCreator.m.o ULSimulationCreator.m: In function '-[ULSimulationCreator _checkInputData]': ULSimulationCreator.m:36:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(name = [externalNamesEnum nextObject]) ^ ULSimulationCreator.m: In function '-[ULSimulationCreator _checkTemplateReferences]': ULSimulationCreator.m:99:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(type = [externalTypeEnum nextObject]) ^ ULSimulationCreator.m: In function '-[ULSimulationCreator init]': ULSimulationCreator.m:123:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULSimulationCreator.m: In function '-[ULSimulationCreator tableView:objectValueForTableColumn:row:]': ULSimulationCreator.m:379:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(type = [inputTypesEnum nextObject]) ^ ULSimulationCreator.m:362:19: warning: unused variable 'string' [-Wunused-variable] NSString* name, *string; ^ ULSimulationCreator.m:396:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gcc ULPasteboard.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULPasteboard.m.o ULPasteboard.m: In function '-[ULPasteboard init]': ULPasteboard.m:20:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULPasteboard.m: In function '-[ULPasteboard availableTypeFromArray:]': ULPasteboard.m:54:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(type = [arrayEnum nextObject]) ^ ULPasteboard.m: In function '-[ULPasteboard setPasteboardOwner:]': ULPasteboard.m:83:2: warning: passing argument 1 of 'pasteboardChangedOwner:' from distinct Objective-C type [enabled by default] [pasteboardOwner pasteboardChangedOwner: self]; ^ gcc ULStatusTable.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULStatusTable.m.o ULStatusTable.m: In function '-[ULStatusTable init]': ULStatusTable.m:53:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULStatusTable.m: In function '-[ULStatusTable awakeFromNib]': ULStatusTable.m:65:12: warning: unused variable 'welcomeString' [-Wunused-variable] NSString* welcomeString; ^ ULStatusTable.m: In function '-[ULStatusTable _tryExportProcess:toFile:overwrite:]': ULStatusTable.m:128:2: warning: no '-exportProcess:toFile:overwrite:error:' method found [enabled by default] if(![processManager exportProcess: process toFile: filename overwrite: flag error: &error]) ^ ULStatusTable.m:128:2: warning: (Messages without a matching method signature [enabled by default] ULStatusTable.m:128:2: warning: will be assumed to return 'id' and accept [enabled by default] ULStatusTable.m:128:2: warning: '...' as arguments.) [enabled by default] ULStatusTable.m: In function '-[ULStatusTable export:]': ULStatusTable.m:176:3: warning: multiple methods named '-runModal' found [enabled by default] result = [savePanel runModal]; ^ In file included from /usr/include/GNUstep/AppKit/NSOpenPanel.h:41:0, from /usr/include/GNUstep/AppKit/AppKit.h:90, from ULStatusTable.h:24, from ULStatusTable.m:22: /usr/include/GNUstep/AppKit/NSSavePanel.h:166:1: note: using '-(NSInteger)runModal' - (NSInteger) runModal; ^ /usr/include/GNUstep/AppKit/NSSavePanel.h:166:1: note: also found '-(NSInteger)runModal' In file included from /usr/include/GNUstep/AppKit/AppKit.h:91:0, from ULStatusTable.h:24, from ULStatusTable.m:22: /usr/include/GNUstep/AppKit/NSPageLayout.h:81:1: note: also found '-(int)runModal' - (int)runModal; ^ ULStatusTable.m: In function '-[ULStatusTable tableView:objectValueForTableColumn:row:]': ULStatusTable.m:344:5: warning: unused variable 'key' [-Wunused-variable] id key, process; ^ gcc ULViewControllerSimulationCommands.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULViewControllerSimulationCommands.m.o ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) halt:]': ULViewControllerSimulationCommands.m:7:6: warning: unused variable 'row' [-Wunused-variable] int row; ^ ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) restart:]': ULViewControllerSimulationCommands.m:26:6: warning: unused variable 'row' [-Wunused-variable] int row; ^ ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) terminateProcess:]': ULViewControllerSimulationCommands.m:44:6: warning: unused variable 'row' [-Wunused-variable] int row; ^ ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) start:]': ULViewControllerSimulationCommands.m:62:6: warning: unused variable 'row' [-Wunused-variable] int row; ^ ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) execute:]': ULViewControllerSimulationCommands.m:91:6: warning: unused variable 'row' [-Wunused-variable] int row; ^ gcc ULPropertiesPanel.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULPropertiesPanel.m.o ULPropertiesPanel.m: In function '-[ULPropertiesPanel awakeFromNib]': ULPropertiesPanel.m:98:5: warning: unused variable 'item' [-Wunused-variable] id item; ^ ULPropertiesPanel.m: In function '-[ULPropertiesPanel _displayAnnotations:]': ULPropertiesPanel.m:289:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(annotation = [annotationEnum nextObject]) ^ gcc ULOutlineViewDelegate.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULOutlineViewDelegate.m.o ULOutlineViewDelegate.m: In function '+[ULOutlineViewWrapper wrapperForObject:parent:identifier:]': ULOutlineViewDelegate.m:68:4: warning: @interface of class 'ULSelectionWrapper' not found [enabled by default] return [[[ULSelectionWrapper alloc] ^ ULOutlineViewDelegate.m:75:5: warning: @interface of class 'ULNodeWrapper' not found [enabled by default] return [[[ULNodeWrapper alloc] ^ ULOutlineViewDelegate.m:82:3: warning: @interface of class 'ULOptionsLeaf' not found [enabled by default] return [[[ULOptionsLeaf alloc] ^ ULOutlineViewDelegate.m: In function '-[ULNodeWrapper _setChildren]': ULOutlineViewDelegate.m:172:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(key = [anEnum nextObject]) ^ ULOutlineViewDelegate.m: In function '-[ULNodeWrapper childForIdentifier:]': ULOutlineViewDelegate.m:214:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(child = [childEnum nextObject]) ^ ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildrenForArray]': ULOutlineViewDelegate.m:260:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(key = [anEnum nextObject]) ^ ULOutlineViewDelegate.m:271:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(key = [anEnum nextObject]) ^ ULOutlineViewDelegate.m:285:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(selectedValue = [selectionEnum nextObject]) ^ ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildrenForDictionary]': ULOutlineViewDelegate.m:319:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(key = [anEnum nextObject]) ^ ULOutlineViewDelegate.m:341:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(selectedValue = [selectionEnum nextObject]) ^ ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildren]': ULOutlineViewDelegate.m:375:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(key = [anEnum nextObject]) ^ ULOutlineViewDelegate.m:399:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(object = [anEnum nextObject]) ^ ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper initWithObject:parent:identifier:]': ULOutlineViewDelegate.m:407:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate initWithProperties:allowEditing:]': ULOutlineViewDelegate.m:530:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate initWithOptions:outlineColumnIdentifier:]': ULOutlineViewDelegate.m:554:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate outlineView:child:ofItem:]': ULOutlineViewDelegate.m:595:2: warning: multiple methods named '-childAtIndex:' found [enabled by default] return (item == nil) ? [wrappedOptions childAtIndex: index] : [item childAtIndex: index]; ^ In file included from /usr/include/GNUstep/Foundation/NSXMLDocument.h:29:0, from /usr/include/GNUstep/Foundation/Foundation.h:133, from ULOutlineViewDelegate.h:24, from ULOutlineViewDelegate.m:23: /usr/include/GNUstep/Foundation/NSXMLNode.h:213:1: note: using '-(NSXMLNode *)childAtIndex:(NSUInteger)index' - (NSXMLNode*) childAtIndex: (NSUInteger)index; ^ /usr/include/GNUstep/Foundation/NSXMLNode.h:213:1: note: also found '-(NSXMLNode *)childAtIndex:(NSUInteger)index' ULOutlineViewDelegate.m:50:1: note: also found '-(id)childAtIndex:(int)index' - (id) childAtIndex: (int) index; ^ ULOutlineViewDelegate.m:595:2: warning: multiple methods named '-childAtIndex:' found [enabled by default] return (item == nil) ? [wrappedOptions childAtIndex: index] : [item childAtIndex: index]; ^ In file included from /usr/include/GNUstep/Foundation/NSXMLDocument.h:29:0, from /usr/include/GNUstep/Foundation/Foundation.h:133, from ULOutlineViewDelegate.h:24, from ULOutlineViewDelegate.m:23: /usr/include/GNUstep/Foundation/NSXMLNode.h:213:1: note: using '-(NSXMLNode *)childAtIndex:(NSUInteger)index' - (NSXMLNode*) childAtIndex: (NSUInteger)index; ^ /usr/include/GNUstep/Foundation/NSXMLNode.h:213:1: note: also found '-(NSXMLNode *)childAtIndex:(NSUInteger)index' ULOutlineViewDelegate.m:50:1: note: also found '-(id)childAtIndex:(int)index' - (id) childAtIndex: (int) index; ^ ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate outlineView:setObjectValue:forTableColumn:byItem:]': ULOutlineViewDelegate.m:634:3: warning: 'NSXMLNode' may not respond to '-setValue:forChild:' [enabled by default] [[item parent] setValue: object forChild: item]; ^ ULOutlineViewDelegate.m:634:3: warning: (Messages without a matching method signature [enabled by default] ULOutlineViewDelegate.m:634:3: warning: will be assumed to return 'id' and accept [enabled by default] ULOutlineViewDelegate.m:634:3: warning: '...' as arguments.) [enabled by default] ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate outlineViewSelectionDidChange:]': ULOutlineViewDelegate.m:645:19: warning: unused variable 'i' [-Wunused-variable] int selectedRow, i; ^ ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildrenForArray]': ULOutlineViewDelegate.m:263:4: warning: 'choiceArray' may be used uninitialized in this function [-Wmaybe-uninitialized] for(i=0; i<[choiceArray count]; i++) ^ ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildren]': ULOutlineViewDelegate.m:390:2: warning: 'optionsType' may be used uninitialized in this function [-Wmaybe-uninitialized] if([optionsType isEqual: @"Dict"]) ^ gcc ULSystemViewController.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULSystemViewController.m.o ULSystemViewController.m: In function '-[ULSystemViewController init]': ULSystemViewController.m:40:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULSystemViewController.m: In function '-[ULSystemViewController _insertString:fontType:]': ULSystemViewController.m:102:29: warning: unused variable 'boldString' [-Wunused-variable] NSMutableAttributedString* boldString; ^ ULSystemViewController.m: In function '-[ULSystemViewController handleNotification:]': ULSystemViewController.m:122:10: warning: unused variable 'range' [-Wunused-variable] NSRange range; ^ ULSystemViewController.m: In function '-[ULSystemViewController _setDelegateForOptions:]': ULSystemViewController.m:187:5: warning: passing argument 1 of 'initWithOptions:' makes integer from pointer without a cast [enabled by default] initWithOptions: options]; ^ ULSystemViewController.m:187:5: note: expected 'NSPointerFunctionsOptions' but argument is of type 'id' ULSystemViewController.m: In function '-[ULSystemViewController open:]': ULSystemViewController.m:251:10: warning: unused variable 'range' [-Wunused-variable] NSRange range; ^ ULSystemViewController.m: In function '-[ULSystemViewController createSystem:]': ULSystemViewController.m:565:6: warning: unused variable 'choice' [-Wunused-variable] int choice; ^ ULSystemViewController.m:562:12: warning: unused variable 'output' [-Wunused-variable] NSString* output; ^ ULSystemViewController.m:561:12: warning: unused variable 'filePath' [-Wunused-variable] NSString* filePath; ^ ULSystemViewController.m:559:7: warning: unused variable 'cancel' [-Wunused-variable] BOOL cancel = NO; ^ ULSystemViewController.m: In function '-[ULSystemViewController(PDBDownloadAdditions) downloadFinished]': ULSystemViewController.m:884:10: warning: unused variable 'data' [-Wunused-variable] NSData* data; ^ gcc ULDatabaseBrowser.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULDatabaseBrowser.m.o ULDatabaseBrowser.m: In function '-[ULDatabaseBrowserPath init]': ULDatabaseBrowser.m:30:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser init]': ULDatabaseBrowser.m:133:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser awakeFromNib]': ULDatabaseBrowser.m:241:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(error = [errorEnum nextObject]) ^ ULDatabaseBrowser.m:167:25: warning: unused variable 'client' [-Wunused-variable] id lastColumn, schema, client, delete; ^ ULDatabaseBrowser.m:167:17: warning: unused variable 'schema' [-Wunused-variable] id lastColumn, schema, client, delete; ^ ULDatabaseBrowser.m:166:17: warning: unused variable 'column' [-Wunused-variable] NSTableColumn* column; ^ ULDatabaseBrowser.m:165:16: warning: unused variable 'userInfo' [-Wunused-variable] NSDictionary* userInfo; ^ ULDatabaseBrowser.m:164:16: warning: unused variable 'columnEnum' [-Wunused-variable] NSEnumerator* columnEnum; ^ ULDatabaseBrowser.m:163:41: warning: unused variable 'schemaEnum' [-Wunused-variable] NSEnumerator* errorEnum, *clientEnum, *schemaEnum; ^ ULDatabaseBrowser.m:163:28: warning: unused variable 'clientEnum' [-Wunused-variable] NSEnumerator* errorEnum, *clientEnum, *schemaEnum; ^ ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser _remove:]': ULDatabaseBrowser.m:393:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(copy = [copyEnum nextObject]) ^ ULDatabaseBrowser.m:435:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(ref = [refEnum nextObject]) ^ ULDatabaseBrowser.m:546:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(error = [errorEnum nextObject]) ^ ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser import:]': ULDatabaseBrowser.m:864:7: warning: unused variable 'retVal' [-Wunused-variable] BOOL retVal; ^ ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser objectsForType:]': ULDatabaseBrowser.m:1043:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(item = [selectionEnum nextObject]) ^ ULDatabaseBrowser.m:1059:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(error = [errorEnum nextObject]) ^ gcc ULDatabaseBrowserDataDisplay.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULDatabaseBrowserDataDisplay.m.o ULDatabaseBrowserDataDisplay.m: In function '-[ULDatabaseBrowser(ULDatabaseBrowserDataDisplay) outlineView:child:ofItem:]': ULDatabaseBrowserDataDisplay.m:73:2: warning: 'object' may be used uninitialized in this function [-Wmaybe-uninitialized] [path setItem: object forLevel: itemLevel + 1]; ^ gcc ULAnalyser.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULAnalyser.m.o ULAnalyser.m: In function '-[ULAnalyser awakeFromNib]': ULAnalyser.m:119:11: warning: unused variable 'plugins' [-Wunused-variable] NSArray* plugins, *columns; ^ ULAnalyser.m:118:15: warning: variable 'ioManager' set but not used [-Wunused-but-set-variable] ULIOManager* ioManager; ^ ULAnalyser.m: In function '-[ULAnalyser open:]': ULAnalyser.m:213:10: warning: unused variable 'endRange' [-Wunused-variable] NSRange endRange; ^ ULAnalyser.m: In function '-[ULAnalyser _threadedLoadSimulation:]': ULAnalyser.m:418:5: warning: unused variable 'holder' [-Wunused-variable] id holder; ^ ULAnalyser.m: In function '-[ULAnalyser _flushProcessEnergies:]': ULAnalyser.m:496:5: warning: variable 'result' set but not used [-Wunused-but-set-variable] id result; ^ ULAnalyser.m: In function '-[ULAnalyser _loadObject:ofType:]': ULAnalyser.m:590:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(dataSet = [dataEnum nextObject]) ^ ULAnalyser.m: In function '-[ULAnalyser load:]': ULAnalyser.m:605:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(type = [availableTypeEnum nextObject]) ^ ULAnalyser.m:611:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(object = [objectEnum nextObject]) ^ ULAnalyser.m: In function '-[ULAnalyser remove:]': ULAnalyser.m:625:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(object = [selectedObjectsEnum nextObject]) ^ ULAnalyser.m: In function '-[ULAnalyser save:]': ULAnalyser.m:681:30: warning: unused variable 'inputObjectsEnum' [-Wunused-variable] NSEnumerator* resultsEnum, *inputObjectsEnum; ^ ULAnalyser.m:681:16: warning: unused variable 'resultsEnum' [-Wunused-variable] NSEnumerator* resultsEnum, *inputObjectsEnum; ^ ULAnalyser.m:680:17: warning: unused variable 'inputObject' [-Wunused-variable] AdModelObject *inputObject; ^ ULAnalyser.m:679:5: warning: unused variable 'dataSet' [-Wunused-variable] id dataSet, databaseInterface; ^ ULAnalyser.m: In function '-[ULAnalyser(ULAnalyserDataSetOpening) openDataSets:]': ULAnalyser.m:1055:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(dataSet = [dataSetEnum nextObject]) ^ ULAnalyser.m: In function '-[ULAnalyser(ULAnalyserDataSetOpening) openDataSet:]': ULAnalyser.m:1073:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(set = [dataSetEnum nextObject]) ^ ULAnalyser.m: In function '-[ULAnalyser(ULAnalyserDataSetOpening) setAvailableDataSets:]': ULAnalyser.m:1138:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(dataSet = [arrayEnum nextObject]) ^ ULAnalyser.m: In function '-[ULAnalyser(ULAnalyserDataSetOpening) dataSetDidChange:]': ULAnalyser.m:1183:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(dataSet = [dataSetEnum nextObject]) ^ gcc ULAnalyserPluginExtensions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULAnalyserPluginExtensions.m.o ULAnalyserPluginExtensions.m: In function '-[ULAnalyser(ULAnalyserPluginExtensions) _displayPluginFiles:]': ULAnalyserPluginExtensions.m:47:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(fileData = [dataEnum nextObject]) ^ ULAnalyserPluginExtensions.m: In function '-[ULAnalyser(ULAnalyserPluginExtensions) displayOptionsForPlugin]': ULAnalyserPluginExtensions.m:124:6: warning: passing argument 1 of 'initWithOptions:' makes integer from pointer without a cast [enabled by default] initWithOptions: currentOptions]; ^ ULAnalyserPluginExtensions.m:124:6: note: expected 'NSPointerFunctionsOptions' but argument is of type 'id' ULAnalyserPluginExtensions.m:135:6: warning: passing argument 1 of 'initWithOptions:' makes integer from pointer without a cast [enabled by default] initWithOptions: currentOptions]; ^ ULAnalyserPluginExtensions.m:135:6: note: expected 'NSPointerFunctionsOptions' but argument is of type 'id' ULAnalyserPluginExtensions.m: In function '-[ULAnalyser(ULAnalyserPluginExtensions) applyCurrentPlugin:]': ULAnalyserPluginExtensions.m:261:2: warning: statement with no effect [-Wunused-value] pluginError == nil; ^ gcc ULAnalyserGnuplotExtensions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULAnalyserGnuplotExtensions.m.o ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) setupGnuplotInterface]': ULAnalyserGnuplotExtensions.m:145:15: warning: unused variable 'ioManager' [-Wunused-variable] ULIOManager* ioManager = [ULIOManager appIOManager]; ^ ULAnalyserGnuplotExtensions.m:144:17: warning: unused variable 'fileManager' [-Wunused-variable] NSFileManager* fileManager; ^ ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) writeMatrixString:]': ULAnalyserGnuplotExtensions.m:290:16: warning: unused variable 'fileHandle' [-Wunused-variable] NSFileHandle* fileHandle; ^ ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) _outputFileForMatrix:inDataSet:columnOrder:]': ULAnalyserGnuplotExtensions.m:333:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(row = [rowEnum nextObject]) ^ ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) createGnuplotFilesForDataSet:]': ULAnalyserGnuplotExtensions.m:370:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(matrix = [matrixEnum nextObject]) ^ ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) removeGnuplotFilesForDataSet:]': ULAnalyserGnuplotExtensions.m:407:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(matrix = [matrixEnum nextObject]) ^ ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) removeGnuplotFilesForDataSets:]': ULAnalyserGnuplotExtensions.m:418:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(dataSet = [arrayEnum nextObject]) ^ ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) textView:doCommandBySelector:]': ULAnalyserGnuplotExtensions.m:440:21: warning: unused variable 'errorString' [-Wunused-variable] NSString* string, *errorString, *currentMatrixName; ^ ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) _previousStringFromHistory]': ULAnalyserGnuplotExtensions.m:258:2: warning: 'string' may be used uninitialized in this function [-Wmaybe-uninitialized] return string; ^ ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) _nextStringFromHistory]': ULAnalyserGnuplotExtensions.m:280:2: warning: 'string' may be used uninitialized in this function [-Wmaybe-uninitialized] return string; ^ gcc ULAnalyserDataSetView.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULAnalyserDataSetView.m.o ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView init]': ULAnalyserDataSetView.m:9:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULAnalyserDataSetView.m:7:11: warning: unused variable 'error' [-Wunused-variable] NSError* error = nil; ^ ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView awakeFromNib]': ULAnalyserDataSetView.m:58:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(column = [columnEnum nextObject]) ^ ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView orderedColumnHeaders]': ULAnalyserDataSetView.m:89:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(column = [columnEnum nextObject]) ^ ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView _displayCurrentDataSetTable]': ULAnalyserDataSetView.m:100:10: warning: unused variable 'range' [-Wunused-variable] NSRange range; ^ ULAnalyserDataSetView.m:99:5: warning: unused variable 'subsystem' [-Wunused-variable] id subsystem, newColumn, columns; ^ ULAnalyserDataSetView.m:98:55: warning: unused variable 'diff' [-Wunused-variable] int currentNumberOfColumns, requiredNumberOfColumns, diff; ^ ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView displayData]': ULAnalyserDataSetView.m:181:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(table = [dataSetTablesEnum nextObject]) ^ gcc ULProgressPanel.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULProgressPanel.m.o ULProgressPanel.m: In function '-[ULProgressPanel initWithTitle:message:progressInfo:]': ULProgressPanel.m:48:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULProgressPanel.m: In function '-[ULProgressPanel runProgressPanel:]': ULProgressPanel.m:128:11: warning: unused variable 'updateEvent' [-Wunused-variable] NSEvent* updateEvent; ^ ULProgressPanel.m: In function '-[ULProgressPanel _incrementFromNotification:]': ULProgressPanel.m:216:14: warning: 'currentStep' may be used uninitialized in this function [-Wmaybe-uninitialized] percent = ((double)currentStep)/totalSteps*100; ^ gcc ULExportPanel.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULExportPanel.m.o ULExportPanel.m: In function '-[ULExportPanel init]': ULExportPanel.m:43:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ gcc ULTemplateViewController.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULTemplateViewController.m.o ULTemplateViewController.m: In function '-[ULTemplateViewController _clearSectionMenus]': ULTemplateViewController.m:38:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(sectionMenu = [sectionEnum nextObject]) ^ ULTemplateViewController.m: In function '-[ULTemplateViewController _addComponentWithName:toSectionMenu:]': ULTemplateViewController.m:56:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(key = [keyEnum nextObject]) ^ ULTemplateViewController.m: In function '-[ULTemplateViewController _updateTemplateView]': ULTemplateViewController.m:63:12: warning: variable 'holder' set but not used [-Wunused-but-set-variable] NSString* holder; ^ ULTemplateViewController.m: In function '-[ULTemplateViewController _updateTemplateWithMenuValues]': ULTemplateViewController.m:90:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(sectionMenu = [sectionEnum nextObject]) ^ ULTemplateViewController.m:93:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(componentName = [componentEnum nextObject]) ^ ULTemplateViewController.m: In function '-[ULTemplateViewController init]': ULTemplateViewController.m:123:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULTemplateViewController.m: In function '-[ULTemplateViewController _outlineViewSelectionDidChange:]': ULTemplateViewController.m:227:6: warning: 'NSXMLNode' may not respond to '-identifier' [enabled by default] [[item parent] identifier]]; ^ ULTemplateViewController.m:227:6: warning: (Messages without a matching method signature [enabled by default] ULTemplateViewController.m:227:6: warning: will be assumed to return 'id' and accept [enabled by default] ULTemplateViewController.m:227:6: warning: '...' as arguments.) [enabled by default] ULTemplateViewController.m: In function '-[ULTemplateViewController awakeFromNib]': ULTemplateViewController.m:253:12: warning: unused variable 'description' [-Wunused-variable] NSString* description; ^ ULTemplateViewController.m: In function '-[ULTemplateViewController displayTemplate:]': ULTemplateViewController.m:319:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(section = [sectionEnum nextObject]) ^ ULTemplateViewController.m:327:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(name = [templateNameEnum nextObject]) ^ gcc ULConverter.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULConverter.m.o gcc ULExportController.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULExportController.m.o ULExportController.m: In function '-[ULExportController init]': ULExportController.m:52:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULExportController.m: In function '-[ULExportController _exportObjectAsBinaryArchive:toFile:]': ULExportController.m:122:6: warning: unused variable 'selectedRow' [-Wunused-variable] int selectedRow; ^ ULExportController.m: In function '-[ULExportController export:]': ULExportController.m:190:2: warning: multiple methods named '-runModal' found [enabled by default] result = [exportPanel runModal]; ^ In file included from /usr/include/GNUstep/AppKit/NSOpenPanel.h:41:0, from /usr/include/GNUstep/AppKit/AppKit.h:90, from ULExportController.h:24, from ULExportController.m:22: /usr/include/GNUstep/AppKit/NSSavePanel.h:166:1: note: using '-(NSInteger)runModal' - (NSInteger) runModal; ^ /usr/include/GNUstep/AppKit/NSSavePanel.h:166:1: note: also found '-(NSInteger)runModal' In file included from /usr/include/GNUstep/AppKit/AppKit.h:91:0, from ULExportController.h:24, from ULExportController.m:22: /usr/include/GNUstep/AppKit/NSPageLayout.h:81:1: note: also found '-(int)runModal' - (int)runModal; ^ ULExportController.m:200:3: warning: multiple methods named '-runModal' found [enabled by default] result = [savePanel runModal]; ^ In file included from /usr/include/GNUstep/AppKit/NSOpenPanel.h:41:0, from /usr/include/GNUstep/AppKit/AppKit.h:90, from ULExportController.h:24, from ULExportController.m:22: /usr/include/GNUstep/AppKit/NSSavePanel.h:166:1: note: using '-(NSInteger)runModal' - (NSInteger) runModal; ^ /usr/include/GNUstep/AppKit/NSSavePanel.h:166:1: note: also found '-(NSInteger)runModal' In file included from /usr/include/GNUstep/AppKit/AppKit.h:91:0, from ULExportController.h:24, from ULExportController.m:22: /usr/include/GNUstep/AppKit/NSPageLayout.h:81:1: note: also found '-(int)runModal' - (int)runModal; ^ ULExportController.m:183:39: warning: variable 'extension' set but not used [-Wunused-but-set-variable] NSString* filename, *format, *type, *extension; ^ ULExportController.m:180:14: warning: unused variable 'index' [-Wunused-variable] int result, index; ^ ULExportController.m: In function '-[ULExportController exportObject:toFile:format:]': ULExportController.m:249:6: warning: unused variable 'selector' [-Wunused-variable] SEL selector; ^ ULExportController.m: In function '-[ULExportController exportCurrentPasteboardObjectAs:]': ULExportController.m:327:35: warning: variable 'extension' set but not used [-Wunused-but-set-variable] NSString* className, *filename, *extension; ^ ULExportController.m: In function '-[ULExportController(ChimeraAttributeFileCreation) _saveAttributeFile:]': ULExportController.m:423:11: warning: unused variable 'error' [-Wunused-variable] NSError* error = nil; ^ ULExportController.m: In function '-[ULExportController(ChimeraAttributeFileCreation) createAttributeFile:]': ULExportController.m:516:5: warning: unused variable 'attribute' [-Wunused-variable] id attribute, residueColumn; ^ ULExportController.m:514:16: warning: unused variable 'attributeEnum' [-Wunused-variable] NSEnumerator* attributeEnum; ^ ULExportController.m:512:49: warning: variable 'atomColName' set but not used [-Wunused-but-set-variable] NSString* name, *matrixName, *residueColName, *atomColName, *version; ^ ULExportController.m: In function '-[ULExportController exportObject:toFile:as:]': ULExportController.m:244:2: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized] [self exportObject: anObject toFile: filename format: format]; ^ gcc ULPreferences.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULPreferences.m.o ULPreferences.m: In function '-[ULPreferences initWithModelViewController:]': ULPreferences.m:50:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(self = [super init]) ^ ULPreferences.m: In function '-[ULPreferences _convertStringToArray:]': ULPreferences.m:195:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(value = [valueEnum nextObject]) ^ ULPreferences.m: In function '-[ULPreferences setDefault:]': ULPreferences.m:257:4: warning: 'domainName' may be used uninitialized in this function [-Wmaybe-uninitialized] inPersistentDomainForName: domainName]; ^ ULPreferences.m:247:2: warning: 'defaultName' may be used uninitialized in this function [-Wmaybe-uninitialized] if([defaultName isEqual: @"GSAppKitUserBundles"]) ^ gcc ULDatabaseManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULDatabaseManager.m.o gcc ULInterfaceFunctions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULInterfaceFunctions.m.o gcc ULOutlineViewAdditions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULOutlineViewAdditions.m.o gcc main.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I/build/buildd/adun.app-0.81 -I/build/buildd/adun.app-0.81/Kernel -I/build/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/main.m.o gcc -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -fgnu-runtime -o UL.app/./UL \ ./obj/UL.obj/ViewController.m.o ./obj/UL.obj/ULSimulationCreator.m.o ./obj/UL.obj/ULPasteboard.m.o ./obj/UL.obj/ULStatusTable.m.o ./obj/UL.obj/ULViewControllerSimulationCommands.m.o ./obj/UL.obj/ULPropertiesPanel.m.o ./obj/UL.obj/ULOutlineViewDelegate.m.o ./obj/UL.obj/ULSystemViewController.m.o ./obj/UL.obj/ULDatabaseBrowser.m.o ./obj/UL.obj/ULDatabaseBrowserDataDisplay.m.o ./obj/UL.obj/ULAnalyser.m.o ./obj/UL.obj/ULAnalyserPluginExtensions.m.o ./obj/UL.obj/ULAnalyserGnuplotExtensions.m.o ./obj/UL.obj/ULAnalyserDataSetView.m.o ./obj/UL.obj/ULProgressPanel.m.o ./obj/UL.obj/ULExportPanel.m.o ./obj/UL.obj/ULTemplateViewController.m.o ./obj/UL.obj/ULConverter.m.o ./obj/UL.obj/ULExportController.m.o ./obj/UL.obj/ULPreferences.m.o ./obj/UL.obj/ULDatabaseManager.m.o ./obj/UL.obj/ULInterfaceFunctions.m.o ./obj/UL.obj/ULOutlineViewAdditions.m.o ./obj/UL.obj/main.m.o -L/opt/intel/lib -L/usr/local/lib -L/build/buildd/adun.app-0.81/MolTalk/MolTalk.framework/Versions/Current -L/build/buildd/adun.app-0.81/Kernel/Base/obj -L/build/buildd/adun.app-0.81/Kernel/AdunKernel/AdunKernel.framework/Versions/Current -L./XMLLib/obj -L. -L./ULFramework/ULFramework.framework/Versions/Current -L/usr/local/lib -L/usr/lib -lXMLLib -lULFramework -lAdunKernel -lMolTalk -ladun_base -lgnustep-gui -lgnustep-base -lobjc -lm /usr/share/GNUstep/Makefiles/mkinstalldirs UL.app/Resources echo "OLD_GNUSTEP_STAMP_ASTRING = _NSApplication---" > ./UL.app/stamp.make (echo "{"; echo ' NOTE = "Automatically generated, do not edit!";'; \ echo " NSExecutable = \"UL\";"; \ echo " NSMainNibFile = \"\";"; \ echo " GSMainMarkupFile = \"\";"; \ if [ "" != "" ]; then \ echo " NSIcon = \"\";"; \ fi; \ echo " NSPrincipalClass = \"NSApplication\";"; \ echo "}") >UL.app/Resources/Info-gnustep.plist if [ -r "ULInfo.plist" ]; then \ plmerge UL.app/Resources/Info-gnustep.plist "ULInfo.plist"; \ fi pl2link UL.app/Resources/Info-gnustep.plist ./UL.app/Resources/UL.desktop; \ chmod a+x ./UL.app/Resources/UL.desktop for f in Resources/UL.gorm Resources/Options.gorm Resources/System.gorm Resources/Converter.gorm Resources/ProgressPanel.gorm Resources/ExportPanel.gorm Resources/CreateAttributePanel.gorm Resources/Results.gorm Resources/Template.gorm Resources/Preferences.gorm Resources/DatabasePanel.gorm Resources/Info-gnustep.plist Resources/defaultOptions.plist Resources/H2O.pdb Resources/splash.tiff Resources/document-save.png Resources/dataset-close.png Resources/apply.png Resources/reload.png Resources/export.png Resources/icon.tiff Resources/QuickStartFiles; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./UL.app/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done make[1]: Leaving directory `/build/buildd/adun.app-0.81/UL' make: Leaving directory `/build/buildd/adun.app-0.81' convert UL/Resources/icon.tiff -resize 32x32 adun.xpm make[1]: Leaving directory `/build/buildd/adun.app-0.81' dh_auto_test -a This is gnustep-make 2.6.2. Type 'make print-gnustep-make-help' for help. make[1]: Entering directory `/build/buildd/adun.app-0.81' Making check in Kernel/ ... Making check in Base ... make[3]: Nothing to be done for `check'. Making check in AdunKernel ... make[3]: Nothing to be done for `check'. Making check in MolTalk/ ... make[2]: Nothing to be done for `check'. Making check in UL/ ... Making check in XMLLib ... make[3]: Nothing to be done for `check'. Making check in ULFramework ... make[3]: Nothing to be done for `check'. Making check in AdunServer ... make[3]: Nothing to be done for `check'. make[1]: Leaving directory `/build/buildd/adun.app-0.81' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/adun.app-0.81' /usr/bin/make install messages=yes DESTDIR=/build/buildd/adun.app-0.81/debian/adun.app \ GNUSTEP_SYSTEM_LIBRARIES=/usr/lib/adun.app \ GNUSTEP_INSTALLATION_DOMAIN=SYSTEM This is gnustep-make 2.6.2. Type 'make print-gnustep-make-help' for help. make[2]: Entering directory `/build/buildd/adun.app-0.81' Making all in Kernel/ ... make[3]: Entering directory `/build/buildd/adun.app-0.81/Kernel' Making all in Base ... make[4]: Entering directory `/build/buildd/adun.app-0.81/Kernel/Base' Making all for library libadun_base... make[7]: Nothing to be done for `internal-library-compile'. make[4]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/Base' Making all in AdunKernel ... make[4]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel' Making build-headers in subprojects of framework AdunKernel... make[5]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' Making build-headers for subproject Framework... make[6]: Nothing to be done for `internal-subproject-build-headers'. make[5]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' make[5]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making build-headers in subprojects of subproject CoreAdditions... make[6]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making build-headers for subproject CoreCommands... make[7]: Nothing to be done for `internal-subproject-build-headers'. make[6]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making build-headers for subproject CoreAdditions... make[6]: Nothing to be done for `internal-subproject-build-headers'. make[5]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making build-headers for framework AdunKernel... cd ./AdunKernel.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "AdunKernel" ]; then \ rm -f ./AdunKernel; \ ln -s ../AdunKernel.framework/Headers \ ./AdunKernel; \ fi Making all in subprojects of framework AdunKernel... make[5]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' Making all for subproject Framework... make[7]: Nothing to be done for `internal-subproject-compile'. make[5]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' make[5]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making all in subprojects of subproject CoreAdditions... make[6]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making all for subproject CoreCommands... make[8]: Nothing to be done for `internal-subproject-compile'. make[6]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making all for subproject CoreAdditions... make[7]: Nothing to be done for `internal-subproject-compile'. make[5]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making all for framework AdunKernel... make[6]: Nothing to be done for `internal-framework-compile'. for f in Resources/ScriptingInfo.plist Resources/GBSWData/; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./AdunKernel.framework/Versions/0/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done for subproject in Framework/ CoreAdditions/; do \ if [ -d $subproject/Resources/Subproject ]; then \ for f in $subproject/Resources/Subproject/*; do \ if [ $f != $subproject'/Resources/Subproject/*' ]; then \ cp -fr $f ./AdunKernel.framework/Versions/0/Resources/; \ fi; \ done; \ fi; \ done cd ./AdunKernel.framework/.; \ rm -f AdunKernel libAdunKernel.so; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./AdunKernel short` \ AdunKernel; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./libAdunKernel.so short` \ libAdunKernel.so make[4]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel' Making all for tool AdunCore... make[6]: Nothing to be done for `internal-tool-compile'. make[3]: Leaving directory `/build/buildd/adun.app-0.81/Kernel' Making all in MolTalk/ ... make[3]: Entering directory `/build/buildd/adun.app-0.81/MolTalk' Making build-headers for framework MolTalk... cd ./MolTalk.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "MolTalk" ]; then \ rm -f ./MolTalk; \ ln -s ../MolTalk.framework/Headers \ ./MolTalk; \ fi Making all for framework MolTalk... make[5]: Nothing to be done for `internal-framework-compile'. for f in Resources/ScriptingInfo.plist; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./MolTalk.framework/Versions/3/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done cd ./MolTalk.framework/.; \ rm -f MolTalk libMolTalk.so; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./MolTalk short` \ MolTalk; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./libMolTalk.so short` \ libMolTalk.so make[3]: Leaving directory `/build/buildd/adun.app-0.81/MolTalk' Making all in UL/ ... make[3]: Entering directory `/build/buildd/adun.app-0.81/UL' Making all in XMLLib ... make[4]: Entering directory `/build/buildd/adun.app-0.81/UL/XMLLib' Making all for library libXMLLib... make[7]: Nothing to be done for `internal-library-compile'. make[4]: Leaving directory `/build/buildd/adun.app-0.81/UL/XMLLib' Making all in ULFramework ... make[4]: Entering directory `/build/buildd/adun.app-0.81/UL/ULFramework' Making build-headers for framework ULFramework... cd ./ULFramework.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "ULFramework" ]; then \ rm -f ./ULFramework; \ ln -s ../ULFramework.framework/Headers \ ./ULFramework; \ fi Making all for framework ULFramework... make[6]: Nothing to be done for `internal-framework-compile'. for f in Resources/ScriptingInfo.plist Resources/objectTemplates.plist Resources/pdbBuilderOptions.plist Resources/pdbNameMap.plist Resources/iupacPdbMap.plist Resources/Version Resources/ForceFields; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./ULFramework.framework/Versions/0/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done cd ./ULFramework.framework/.; \ rm -f ULFramework libULFramework.so; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./ULFramework short` \ ULFramework; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./libULFramework.so short` \ libULFramework.so make[4]: Leaving directory `/build/buildd/adun.app-0.81/UL/ULFramework' Making all in AdunServer ... make[4]: Entering directory `/build/buildd/adun.app-0.81/UL/AdunServer' Making all for tool AdunServer... make[7]: Nothing to be done for `internal-tool-compile'. make[4]: Leaving directory `/build/buildd/adun.app-0.81/UL/AdunServer' Making all for app UL... make[6]: Nothing to be done for `internal-app-compile'. pl2link UL.app/Resources/Info-gnustep.plist ./UL.app/Resources/UL.desktop; \ chmod a+x ./UL.app/Resources/UL.desktop for f in Resources/UL.gorm Resources/Options.gorm Resources/System.gorm Resources/Converter.gorm Resources/ProgressPanel.gorm Resources/ExportPanel.gorm Resources/CreateAttributePanel.gorm Resources/Results.gorm Resources/Template.gorm Resources/Preferences.gorm Resources/DatabasePanel.gorm Resources/Info-gnustep.plist Resources/defaultOptions.plist Resources/H2O.pdb Resources/splash.tiff Resources/document-save.png Resources/dataset-close.png Resources/apply.png Resources/reload.png Resources/export.png Resources/icon.tiff Resources/QuickStartFiles; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./UL.app/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done make[3]: Leaving directory `/build/buildd/adun.app-0.81/UL' Making install in Kernel/ ... make[3]: Entering directory `/build/buildd/adun.app-0.81/Kernel' Making install in Base ... make[4]: Entering directory `/build/buildd/adun.app-0.81/Kernel/Base' Making install for library libadun_base... if [ -f ./obj/libadun_base.so.0.0.1 ]; then \ /usr/bin/install -c -p ./obj/libadun_base.so.0.0.1 \ /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. ; \ (cd /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/.; rm -f libadun_base.so; if [ "libadun_base.so.0" != "libadun_base.so.0.0.1" ]; then rm -f libadun_base.so.0; ln -s libadun_base.so.0.0.1 libadun_base.so.0; fi; ln -s libadun_base.so.0 libadun_base.so; ) \ fi /usr/share/GNUstep/Makefiles/mkinstalldirs /build/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep//Base for file in AdForceFieldFunctions.h AdGeneralizedBornFunctions.h AdMatrix.h AdQuaternion.h AdSorter.h AdVector.h AdQuadratureFunctions.h AdVolumeFunctions.h AdBaseFunctions.h AdLinkedList.h __done; do \ if [ $file != __done ]; then \ /usr/bin/install -c -p -m 644 ./$file \ /build/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep//Base/$file; \ fi; \ done make[4]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/Base' Making install in AdunKernel ... make[4]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel' /usr/share/GNUstep/Makefiles/mkinstalldirs /build/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep/Framework/Protocols Making install in subprojects of framework AdunKernel... make[5]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' Making install for subproject Framework... make[6]: Nothing to be done for `internal-subproject-install'. make[5]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' make[5]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making install in subprojects of subproject CoreAdditions... make[6]: Entering directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making install for subproject CoreCommands... make[7]: Nothing to be done for `internal-subproject-install'. make[6]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making install for subproject CoreAdditions... make[6]: Nothing to be done for `internal-subproject-install'. make[5]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making install for framework AdunKernel... /usr/share/GNUstep/Makefiles/mkinstalldirs /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks rm -rf /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/AdunKernel.framework; \ (cd .; tar cfX - /usr/share/GNUstep/Makefiles/tar-exclude-list AdunKernel.framework) | (cd /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks; tar xf -) cd /build/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep; \ rm -f AdunKernel; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /build/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Headers short` AdunKernel; \ cd /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/.; \ rm -f libAdunKernel.so; \ rm -f libAdunKernel.so.0; \ rm -f libAdunKernel.so.0.13; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/Current/./libAdunKernel.so short` libAdunKernel.so; \ if test -r "/build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/Current/./libAdunKernel.so.0"; then \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/Current/./libAdunKernel.so.0 short` libAdunKernel.so.0; \ fi; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/Current/./libAdunKernel.so.0.13 short` libAdunKernel.so.0.13 make[4]: Leaving directory `/build/buildd/adun.app-0.81/Kernel/AdunKernel' Making install for tool AdunCore... /usr/share/GNUstep/Makefiles/mkinstalldirs /build/buildd/adun.app-0.81/debian/adun.app//usr/bin/. /usr/bin/install -c -p -m 0755 \ ./obj/AdunCore \ /build/buildd/adun.app-0.81/debian/adun.app//usr/bin/. /usr/share/GNUstep/Makefiles/mkinstalldirs /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Tools/Resources rm -rf /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Tools/Resources/AdunCore; \ (cd ./Resources; \ tar chfX - /usr/share/GNUstep/Makefiles/tar-exclude-list AdunCore) \ | (cd /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Tools/Resources; tar xf -) make[3]: Leaving directory `/build/buildd/adun.app-0.81/Kernel' Making install in MolTalk/ ... make[3]: Entering directory `/build/buildd/adun.app-0.81/MolTalk' Making install for framework MolTalk... rm -rf /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/MolTalk.framework; \ (cd .; tar cfX - /usr/share/GNUstep/Makefiles/tar-exclude-list MolTalk.framework) | (cd /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks; tar xf -) cd /build/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep; \ rm -f MolTalk; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /build/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/MolTalk.framework/Headers short` MolTalk; \ cd /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/.; \ rm -f libMolTalk.so; \ rm -f libMolTalk.so.3; \ rm -f libMolTalk.so.3.0.1; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/Current/./libMolTalk.so short` libMolTalk.so; \ if test -r "/build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/Current/./libMolTalk.so.3"; then \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/Current/./libMolTalk.so.3 short` libMolTalk.so.3; \ fi; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/Current/./libMolTalk.so.3.0.1 short` libMolTalk.so.3.0.1 make[3]: Leaving directory `/build/buildd/adun.app-0.81/MolTalk' Making install in UL/ ... make[3]: Entering directory `/build/buildd/adun.app-0.81/UL' Making install in XMLLib ... make[4]: Entering directory `/build/buildd/adun.app-0.81/UL/XMLLib' Making install for library libXMLLib... if [ -f ./obj/libXMLLib.so.0.1 ]; then \ /usr/bin/install -c -p ./obj/libXMLLib.so.0.1 \ /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. ; \ (cd /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/.; rm -f libXMLLib.so; if [ "libXMLLib.so.0" != "libXMLLib.so.0.1" ]; then rm -f libXMLLib.so.0; ln -s libXMLLib.so.0.1 libXMLLib.so.0; fi; ln -s libXMLLib.so.0 libXMLLib.so; ) \ fi /usr/share/GNUstep/Makefiles/mkinstalldirs /build/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep//XMLLib for file in XMLDocumentRoot.h XMLNode.h XMLLib.h ULParameterNode.h ULTopologyNode.h ULClassNode.h ULInteractionNode.h ULParameterTree.h ULMolecularLibraryNode.h ULMoleculeClassNode.h ULMoleculeNode.h ULConnectivityNode.h ULAtomListNode.h ULMolecularLibraryTree.h __done; do \ if [ $file != __done ]; then \ /usr/bin/install -c -p -m 644 ./$file \ /build/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep//XMLLib/$file; \ fi; \ done make[4]: Leaving directory `/build/buildd/adun.app-0.81/UL/XMLLib' Making install in ULFramework ... make[4]: Entering directory `/build/buildd/adun.app-0.81/UL/ULFramework' Making install for framework ULFramework... rm -rf /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/ULFramework.framework; \ (cd .; tar cfX - /usr/share/GNUstep/Makefiles/tar-exclude-list ULFramework.framework) | (cd /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks; tar xf -) cd /build/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep; \ rm -f ULFramework; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /build/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/ULFramework.framework/Headers short` ULFramework; \ cd /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/.; \ rm -f libULFramework.so; \ rm -f libULFramework.so.0; \ rm -f libULFramework.so.0.6; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/Current/./libULFramework.so short` libULFramework.so; \ if test -r "/build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/Current/./libULFramework.so.0"; then \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/Current/./libULFramework.so.0 short` libULFramework.so.0; \ fi; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/Current/./libULFramework.so.0.6 short` libULFramework.so.0.6 make[4]: Leaving directory `/build/buildd/adun.app-0.81/UL/ULFramework' Making install in AdunServer ... make[4]: Entering directory `/build/buildd/adun.app-0.81/UL/AdunServer' Making install for tool AdunServer... /usr/bin/install -c -p -m 0755 \ ./obj/AdunServer \ /build/buildd/adun.app-0.81/debian/adun.app//usr/bin/. make[4]: Leaving directory `/build/buildd/adun.app-0.81/UL/AdunServer' Making install for app UL... /usr/share/GNUstep/Makefiles/mkinstalldirs /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Applications rm -rf /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Applications/UL.app; \ (cd ./.; \ tar chfX - /usr/share/GNUstep/Makefiles/tar-exclude-list UL.app) \ | (cd /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Applications; tar xf -) \ cd /build/buildd/adun.app-0.81/debian/adun.app//usr/bin/.; \ rm -f UL; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /build/buildd/adun.app-0.81/debian/adun.app//usr/bin/. /build/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Applications/UL.app/./UL short` \ UL make[3]: Leaving directory `/build/buildd/adun.app-0.81/UL' make[2]: Leaving directory `/build/buildd/adun.app-0.81' make[1]: Leaving directory `/build/buildd/adun.app-0.81' debian/rules override_dh_install make[1]: Entering directory `/build/buildd/adun.app-0.81' dh_install rm -r /build/buildd/adun.app-0.81/debian/adun.app/usr/include/GNUstep/Framework \ /build/buildd/adun.app-0.81/debian/adun.app/usr/lib/GNUstep/Tools rm /build/buildd/adun.app-0.81/debian/adun.app/usr/lib/GNUstep/Applications/*.app/Resources/*.desktop make[1]: Leaving directory `/build/buildd/adun.app-0.81' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_installmenu -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory `/build/buildd/adun.app-0.81' dh_link dh_gnustep dh_installdirs usr/share/GNUstep mv /build/buildd/adun.app-0.81/debian/adun.app/usr/lib/GNUstep/Applications/UL.app/Resources \ /build/buildd/adun.app-0.81/debian/adun.app/usr/share/GNUstep/UL.app dh_link usr/share/GNUstep/UL.app \ /usr/lib/GNUstep/Applications/UL.app/Resources make[1]: Leaving directory `/build/buildd/adun.app-0.81' dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory `/build/buildd/adun.app-0.81' dh_fixperms find /build/buildd/adun.app-0.81/debian/adun.app/usr/share/GNUstep/UL.app -type f -exec chmod -x '{}' \; find /build/buildd/adun.app-0.81/debian/adun.app/usr/lib/GNUstep/Applications/UL.app/Resources -type f -exec chmod -x '{}' \; chmod -x /build/buildd/adun.app-0.81/debian/adun.app/usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/Resources/ForceFields/Enzymix/*.ffml make[1]: Leaving directory `/build/buildd/adun.app-0.81' dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: adun.app dh_strip debug symbol extraction: packages to act on: adun.app dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `adun.app-dbgsym' in `../adun.app-dbgsym_0.81-6_amd64.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/adun.app/usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13 was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing adun.app (in debian/adun.app); do_strip: , oemstrip: debian/adun.app/usr/share/applications/UL.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/adun.app/DEBIAN/control, package adun.app, directory debian/adun.app OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/GNUstep/UL.app/apply.png 32x32 pixels, 4x8 bits/pixel, RGB+alpha Input IDAT size = 1146 bytes Input file size = 1219 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 1136 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 Output IDAT size = 1127 bytes (19 bytes decrease) Output file size = 1200 bytes (19 bytes = 1.56% decrease) 1200 1200 100% ./usr/share/GNUstep/UL.app/apply.png (Bigger 1305) 1200 1200 100% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/GNUstep/UL.app/document-save.png 32x32 pixels, 4x8 bits/pixel, RGB+alpha Input IDAT size = 1898 bytes Input file size = 1971 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1830 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 1782 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 1782 Output IDAT size = 1782 bytes (116 bytes decrease) Output file size = 1855 bytes (116 bytes = 5.89% decrease) 1855 1855 100% ./usr/share/GNUstep/UL.app/document-save.png (Bigger 1878) 1855 1855 100% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/GNUstep/UL.app/dataset-close.png 32x32 pixels, 4x8 bits/pixel, RGB+alpha Input IDAT size = 1052 bytes Input file size = 1194 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1046 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1046 Output IDAT size = 1046 bytes (6 bytes decrease) Output file size = 1188 bytes (6 bytes = 0.50% decrease) 1188 1188 100% ./usr/share/GNUstep/UL.app/dataset-close.png (Bigger 1226) 1188 1188 100% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/GNUstep/UL.app/reload.png 32x32 pixels, 4x8 bits/pixel, RGB+alpha Input IDAT size = 1951 bytes Input file size = 2024 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 1937 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1924 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1924 Output IDAT size = 1924 bytes (27 bytes decrease) Output file size = 1997 bytes (27 bytes = 1.33% decrease) 1997 1997 100% ./usr/share/GNUstep/UL.app/reload.png (Bigger 2001) 1997 1997 100% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/GNUstep/UL.app/export.png 32x32 pixels, 4x8 bits/pixel, RGB+alpha Input IDAT size = 1120 bytes Input file size = 1193 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1108 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1108 Output IDAT size = 1108 bytes (12 bytes decrease) Output file size = 1181 bytes (12 bytes = 1.01% decrease) 1181 1181 100% ./usr/share/GNUstep/UL.app/export.png (Bigger 1236) 1181 1181 100% pkgstripfiles: PNG optimization for package adun.app took 0 s dpkg-deb: warning: 'debian/adun.app/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `adun.app' in `../adun.app_0.81-6_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../adun.app_0.81-6_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build adun.app-0.81 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131117-1711 Publishing debug debs. chroot-autobuild/build/buildd/adun.app_0.81-6_amd64.deb: new debian package, version 2.0. size 1203448 bytes: control archive= 7891 bytes. 919 bytes, 16 lines control 24033 bytes, 236 lines md5sums 303 bytes, 12 lines * postinst #!/bin/sh 275 bytes, 10 lines * postrm #!/bin/sh 118 bytes, 5 lines shlibs Package: adun.app Version: 0.81-6 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 7716 Depends: gnustep-back0.22 (>= 0.22.0), gnustep-base-runtime (>= 1.24.0), gnustep-gpbs (>= 0.22.0), gnustep-gui-runtime (>= 0.22.0), libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgnustep-base1.24 (>= 1.24.0), libgnustep-gui0.22 (>= 0.22.0), libgsl0ldbl (>= 1.9), libobjc4 (>= 4.2.1), gnustep-fslayout-fhs Recommends: gnuplot Section: gnustep Priority: optional Homepage: http://diana.imim.es/Adun Description: Molecular Simulator for GNUstep Adun is a biomolecular simulator that also includes data management and analysis capabilities. It was developed at the Computational Biophysics and Biochemistry Laboratory, a part of the Research Unit on Biomedical Informatics of the UPF. chroot-autobuild/build/buildd/adun.app_0.81-6_amd64.deb: drwxr-xr-x root/root 0 2013-11-17 17:11 ./ drwxr-xr-x root/root 0 2013-11-17 17:11 ./usr/ drwxr-xr-x root/root 0 2013-11-17 17:11 ./usr/lib/ drwxr-xr-x root/root 0 2013-11-17 17:11 ./usr/lib/adun.app/ -rw-r--r-- root/root 67872 2013-11-17 17:11 ./usr/lib/adun.app/libadun_base.so.0.0.1 -rw-r--r-- root/root 64376 2013-11-17 17:11 ./usr/lib/adun.app/libXMLLib.so.0.1 drwxr-xr-x root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/ drwxr-xr-x root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Applications/ drwxr-xr-x root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Applications/UL.app/ -rw-r--r-- root/root 46 2013-11-17 17:11 ./usr/lib/GNUstep/Applications/UL.app/stamp.make -rwxr-xr-x root/root 455528 2013-11-17 17:11 ./usr/lib/GNUstep/Applications/UL.app/UL drwxr-xr-x root/root 0 2013-11-17 17:11 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lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/adun.app/libAdunKernel.so.0 -> ../GNUstep/Frameworks/AdunKernel.framework/Versions/Current/libAdunKernel.so.0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/adun.app/libAdunKernel.so.0.13 -> ../GNUstep/Frameworks/AdunKernel.framework/Versions/Current/libAdunKernel.so.0.13 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/adun.app/libULFramework.so.0.6 -> ../GNUstep/Frameworks/ULFramework.framework/Versions/Current/libULFramework.so.0.6 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/adun.app/libMolTalk.so.3 -> ../GNUstep/Frameworks/MolTalk.framework/Versions/Current/libMolTalk.so.3 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/adun.app/libULFramework.so.0 -> ../GNUstep/Frameworks/ULFramework.framework/Versions/Current/libULFramework.so.0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/adun.app/libXMLLib.so.0 -> libXMLLib.so.0.1 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/adun.app/libMolTalk.so -> ../GNUstep/Frameworks/MolTalk.framework/Versions/Current/libMolTalk.so lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/adun.app/libMolTalk.so.3.0.1 -> ../GNUstep/Frameworks/MolTalk.framework/Versions/Current/libMolTalk.so.3.0.1 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/adun.app/libadun_base.so.0 -> libadun_base.so.0.0.1 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/adun.app/libXMLLib.so -> libXMLLib.so.0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Applications/UL.app/Resources -> ../../../../share/GNUstep/UL.app lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/MolTalk -> Versions/Current/MolTalk lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/Current -> 3 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/MolTalk -> libMolTalk.so lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/Headers -> ../../../../../../include/GNUstep/Frameworks/MolTalk.framework/Versions/3 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3 -> libMolTalk.so.3.0.1 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/Resources -> ../../../../../../share/GNUstep/Frameworks/MolTalk.framework/Versions/3 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so -> libMolTalk.so.3 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Headers -> Versions/Current/Headers lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/Resources -> Versions/Current/Resources lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/MolTalk.framework/libMolTalk.so -> Versions/Current/libMolTalk.so lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/libAdunKernel.so -> Versions/Current/libAdunKernel.so lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/Current -> 0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so -> libAdunKernel.so.0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/AdunKernel -> libAdunKernel.so lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/Headers -> ../../../../../../include/GNUstep/Frameworks/AdunKernel.framework/Versions/0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0 -> libAdunKernel.so.0.13 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/Resources -> ../../../../../../share/GNUstep/Frameworks/AdunKernel.framework/Versions/0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/AdunKernel -> Versions/Current/AdunKernel lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Headers -> Versions/Current/Headers lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/AdunKernel.framework/Resources -> Versions/Current/Resources lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/Current -> 0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/libULFramework.so -> libULFramework.so.0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/Headers -> ../../../../../../include/GNUstep/Frameworks/ULFramework.framework/Versions/0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/Resources -> ../../../../../../share/GNUstep/Frameworks/ULFramework.framework/Versions/0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/libULFramework.so.0 -> libULFramework.so.0.6 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/ULFramework -> libULFramework.so lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/libULFramework.so -> Versions/Current/libULFramework.so lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/Headers -> Versions/Current/Headers lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/Resources -> Versions/Current/Resources lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/lib/GNUstep/Frameworks/ULFramework.framework/ULFramework -> Versions/Current/ULFramework lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/include/GNUstep/MolTalk -> ../../lib/GNUstep/Frameworks/MolTalk.framework/Headers lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/include/GNUstep/AdunKernel -> ../../lib/GNUstep/Frameworks/AdunKernel.framework/Headers lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/include/GNUstep/Frameworks/MolTalk.framework/Headers -> Versions/3 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/include/GNUstep/Frameworks/AdunKernel.framework/Headers -> Versions/0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/include/GNUstep/Frameworks/ULFramework.framework/Headers -> Versions/0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/include/GNUstep/ULFramework -> ../../lib/GNUstep/Frameworks/ULFramework.framework/Headers lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/share/GNUstep/Frameworks/MolTalk.framework/Resources -> Versions/3 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/share/GNUstep/Frameworks/AdunKernel.framework/Resources -> Versions/0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/share/GNUstep/Frameworks/ULFramework.framework/Resources -> Versions/0 lrwxrwxrwx root/root 0 2013-11-17 17:11 ./usr/bin/UL -> ../lib/GNUstep/Applications/UL.app/UL adun.app_0.81-6_amd64.changes: Format: 1.8 Date: Fri, 15 Nov 2013 13:54:30 +0100 Source: adun.app Binary: adun.app Architecture: amd64 Version: 0.81-6 Distribution: trusty-proposed Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Andreas Tille Description: adun.app - Molecular Simulator for GNUstep Changes: adun.app (0.81-6) unstable; urgency=low . [ Charles Plessy ] * Renamed debian/upstream-metadata.yaml to debian/upstream . [ Andreas Tille ] * debian/source/format: 3.0 (quilt) * debian/upstream: Small modifications to better match definition of References * debian/control: - cme fix dpkg-control * debian/rules: - dh - hardening . [ Thorsten Alteholz ] * debian/rules: target get-orig-source added Checksums-Sha1: b7a4dbf4a341a2f1bb3b14e48d81c6bf80be90ae 1203448 adun.app_0.81-6_amd64.deb Checksums-Sha256: f9da80da38bfbe94fb5d66167db893a111bd7e8196b758a02e5cf265f8381b23 1203448 adun.app_0.81-6_amd64.deb Files: 4f932e0a707f3f08fab464b94fcd276b 1203448 gnustep optional adun.app_0.81-6_amd64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131117-1711 Build needed 00:01:11, 66136k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5239646'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5239646/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5239646'] Unmounting chroot for build PACKAGEBUILD-5239646... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5239646'] Removing build PACKAGEBUILD-5239646