https://launchpad.net/ubuntu/+source/aevol/5.0+ds-3build1/+build/27576086 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-030 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:28 UTC 2023 x86_64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 19 Dec 15:06:35 ntpdate[1836]: adjust time server 10.131.248.1 offset 0.000134 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27576086 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9 Creating target for build PACKAGEBUILD-27576086 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27576086 Starting target for build PACKAGEBUILD-27576086 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27576086 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27576086 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27576086 Updating target for build PACKAGEBUILD-27576086 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [240 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 Packages [1406 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe amd64 Packages [15.0 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6031 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [160 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [44.9 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [1070 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [325 kB] Fetched 25.1 MB in 3s (9085 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-x86-64-linux-gnu bsdextrautils bsdutils coreutils cpp cpp-13 debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep init init-system-helpers krb5-locales libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps readline-common systemd systemd-dev systemd-sysv sysvinit-utils tar ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 135 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 111 MB of archives. After this operation, 6093 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.38-3ubuntu1 [2114 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.38-3ubuntu1 [20.3 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-common all 1.3.4+ds-1 [7920 B] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1 [193 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libgssapi-krb5-2 amd64 1.20.1-5build1 [142 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5-3 amd64 1.20.1-5build1 [346 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libk5crypto3 amd64 1.20.1-5build1 [81.3 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5support0 amd64 1.20.1-5build1 [33.2 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libssl3 amd64 3.0.10-1ubuntu3 [1910 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc3 amd64 1.3.4+ds-1 [81.4 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl2 amd64 1.3.0-3 [41.3 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 linux-libc-dev amd64 6.6.0-14.14 [1580 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 13.2.0-9ubuntu1 [48.0 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgprofng0 amd64 2.41.50.20231214-1ubuntu1 [858 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libctf0 amd64 2.41.50.20231214-1ubuntu1 [83.2 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libctf-nobfd0 amd64 2.41.50.20231214-1ubuntu1 [86.3 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-x86-64-linux-gnu amd64 2.41.50.20231214-1ubuntu1 [2510 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libbinutils amd64 2.41.50.20231214-1ubuntu1 [539 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-common amd64 2.41.50.20231214-1ubuntu1 [258 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 binutils amd64 2.41.50.20231214-1ubuntu1 [7696 B] Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-base amd64 13.2.0-9ubuntu1 [45.2 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-s1 amd64 13.2.0-9ubuntu1 [63.1 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 13.2.0-9ubuntu1 [142 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 13.2.0-9ubuntu1 [29.5 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 13.2.0-9ubuntu1 [10.5 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 13.2.0-9ubuntu1 [2835 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 13.2.0-9ubuntu1 [1203 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 13.2.0-9ubuntu1 [2606 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 13.2.0-9ubuntu1 [1105 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 13.2.0-9ubuntu1 [1262 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 13.2.0-9ubuntu1 [153 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-9ubuntu1 [12.2 MB] Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-9ubuntu1 [2336 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-9ubuntu1 [2687 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-9ubuntu1 [21.5 MB] Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-9ubuntu1 [10.7 MB] Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++6 amd64 13.2.0-9ubuntu1 [771 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 zlib1g amd64 1:1.3.dfsg-3ubuntu1 [63.3 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libsframe1 amd64 2.41.50.20231214-1ubuntu1 [13.8 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [297 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.38-3ubuntu1 [3248 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 base-files amd64 13ubuntu5 [73.6 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.14 [89.0 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 bash amd64 5.2.21-2ubuntu1 [795 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 bsdutils amd64 1:2.39.2-6ubuntu1 [93.9 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 coreutils amd64 9.4-2ubuntu1 [1395 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 diffutils amd64 1:3.10-1 [176 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma5 amd64 5.4.5-0.1 [128 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libapparmor1 amd64 4.0.0~alpha2-0ubuntu7 [48.2 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit-common all 1:3.1.2-1 [5512 B] Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libcap-ng0 amd64 0.8.3-3 [15.3 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit1 amd64 1:3.1.2-1 [46.7 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libblkid1 amd64 2.39.2-6ubuntu1 [122 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libkmod2 amd64 30+20230601-2ubuntu1 [51.4 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-8-0 amd64 10.42-4ubuntu1 [228 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libselinux1 amd64 3.5-1build2 [78.5 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libmount1 amd64 2.39.2-6ubuntu1 [132 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libpam0g amd64 1.5.2-9.1ubuntu1 [65.1 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libseccomp2 amd64 2.5.4-2ubuntu1 [49.3 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd-sysv amd64 255-1ubuntu1 [11.7 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd-dev all 255-1ubuntu1 [98.5 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd amd64 255-1ubuntu1 [3484 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsystemd-shared amd64 255-1ubuntu1 [2062 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libargon2-1 amd64 0~20190702+dfsg-4 [21.4 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libuuid1 amd64 2.39.2-6ubuntu1 [34.1 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libcryptsetup12 amd64 2:2.6.1-5ubuntu1 [242 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libfdisk1 amd64 2.39.2-6ubuntu1 [145 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 mount amd64 2.39.2-6ubuntu1 [118 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsystemd0 amd64 255-1ubuntu1 [427 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libudev1 amd64 255-1ubuntu1 [169 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libxxhash0 amd64 0.8.2-2 [25.5 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libapt-pkg6.0 amd64 2.7.7 [945 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 tar amd64 1.34+dfsg-1.2ubuntu2 [293 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg amd64 1.22.1ubuntu5 [1387 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 grep amd64 3.11-3 [161 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 login amd64 1:4.13+dfsg1-3ubuntu1 [201 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-bin amd64 6.4+20231209-1 [187 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libperl5.36 amd64 5.36.0-10ubuntu1 [4782 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 perl amd64 5.36.0-10ubuntu1 [235 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 perl-base amd64 5.36.0-10ubuntu1 [1770 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libdb5.3 amd64 5.3.28+dfsg2-4 [736 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm6 amd64 1.23-5 [33.3 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm-compat4 amd64 1.23-5 [6498 B] Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 util-linux amd64 2.39.2-6ubuntu1 [1120 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libdebconfclient0 amd64 0.271ubuntu1 [11.3 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 base-passwd amd64 3.6.3 [51.2 kB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.38-3ubuntu1 [680 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-base all 6.4+20231209-1 [25.2 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 sysvinit-utils amd64 3.08-3ubuntu1 [33.7 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt amd64 2.7.7 [1376 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt-utils amd64 2.7.7 [216 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libunistring5 amd64 1.1-2 [537 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libidn2-0 amd64 2.3.4-1build1 [64.3 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libffi8 amd64 3.4.4-2 [24.4 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libp11-kit0 amd64 0.25.3-2ubuntu2 [298 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libgnutls30 amd64 3.8.1-4ubuntu6 [988 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules-bin amd64 1.5.2-9.1ubuntu1 [47.6 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules amd64 1.5.2-9.1ubuntu1 [284 kB] Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 init amd64 1.66ubuntu1 [6186 B] Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libsmartcols1 amd64 2.39.2-6ubuntu1 [63.3 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 uuid-runtime amd64 2.39.2-6ubuntu1 [32.9 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error-l10n all 1.47-3build1 [8024 B] Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error0 amd64 1.47-3build1 [70.0 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-runtime all 1.5.2-9.1ubuntu1 [41.5 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage-common all 3.5-1build1 [9982 B] Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libsepol2 amd64 3.5-2 [300 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage2 amd64 3.5-1build1 [92.9 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libncursesw6 amd64 6.4+20231209-1 [147 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libtinfo6 amd64 6.4+20231209-1 [107 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 passwd amd64 1:4.13+dfsg1-3ubuntu1 [844 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libproc2-0 amd64 2:4.0.4-2ubuntu1 [59.0 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 mawk amd64 1.3.4.20231126-1 [126 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 procps amd64 2:4.0.4-2ubuntu1 [708 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 krb5-locales all 1.20.1-5build1 [13.7 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 readline-common all 8.2-3 [56.2 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline8 amd64 8.2-3 [152 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libsqlite3-0 amd64 3.44.2-1 [685 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 openssl amd64 3.0.10-1ubuntu3 [1188 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 bash-completion all 1:2.11-8 [180 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 bsdextrautils amd64 2.39.2-6ubuntu1 [73.5 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libpng16-16 amd64 1.6.40-2 [186 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 xz-utils amd64 5.4.5-0.1 [268 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-2ubuntu1 [1122 B] Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-2ubuntu1 [5166 B] Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-2ubuntu1 [29.0 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg-dev all 1.22.1ubuntu5 [1147 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libdpkg-perl all 1.22.1ubuntu5 [286 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 lto-disabled-list all 44 [12.4 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libfakeroot amd64 1.32.2-1 [32.1 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 fakeroot amd64 1.32.2-1 [67.1 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 optipng amd64 0.7.7-3 [83.3 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 pinentry-curses amd64 1.2.1-3ubuntu1 [34.9 kB] Preconfiguring packages ... 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Setting up libtirpc-dev:amd64 (1.3.4+ds-1) ... Setting up gcc-13 (13.2.0-9ubuntu1) ... Setting up libdpkg-perl (1.22.1ubuntu5) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up gcc (4:13.2.0-2ubuntu1) ... Setting up dpkg-dev (1.22.1ubuntu5) ... Setting up libnsl-dev:amd64 (1.3.0-3) ... Setting up libc6-dev:amd64 (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:amd64 (13.2.0-9ubuntu1) ... Setting up g++-13 (13.2.0-9ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.14) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27576086 amd64 noble-proposed -c chroot:build-PACKAGEBUILD-27576086 --arch=amd64 --dist=noble-proposed --nolog -A aevol_5.0+ds-3build1.dsc Initiating build PACKAGEBUILD-27576086 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:28 UTC 2023 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-030.buildd +==============================================================================+ | aevol 5.0+ds-3build1 (amd64) Tue, 19 Dec 2023 15:06:57 +0000 | +==============================================================================+ Package: aevol Version: 5.0+ds-3build1 Source Version: 5.0+ds-3build1 Distribution: noble-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27576086/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/aevol-5GEt7J/resolver-hf52AI' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- aevol_5.0+ds-3build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/aevol-5GEt7J/aevol-5.0+ds' with '<>' I: NOTICE: Log filtering will replace 'build/aevol-5GEt7J' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libx11-dev, libboost-dev, libboost-system-dev, libboost-filesystem-dev, libopenmpi-dev, autoconf-archive, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libx11-dev, libboost-dev, libboost-system-dev, libboost-filesystem-dev, libopenmpi-dev, autoconf-archive, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [416 B] Get:5 copy:/<>/apt_archive ./ Packages [500 B] Fetched 1873 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran-13 groff-base ibverbs-providers intltool-debian libarchive-zip-perl libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost1.83-dev libbsd0 libcbor0.10 libdebhelper-perl libdw1 libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfido2-1 libfile-stripnondeterminism-perl libgfortran-13-dev libgfortran5 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu74 libjs-jquery libjs-jquery-ui libltdl-dev libltdl7 libmagic-mgc libmagic1 libmunge2 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix-dev libpmix2 libpsm-infinipath1 libpsm2-2 libpthread-stubs0-dev librdmacm1 libsub-override-perl libtool libuchardet0 libucx0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf sgml-base x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-13-multilib gfortran-13-doc libcoarrays-dev groff libboost-doc libboost1.83-doc libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-graph1.83-dev libboost-graph-parallel1.83-dev libboost-iostreams1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi1.83-dev libboost-mpi-python1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.83-dev libhwloc-contrib-plugins libjs-jquery-ui-docs libtool-doc openmpi-doc pciutils gcj-jdk libx11-doc libxcb-doc m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl javascript-common libcoarrays-openmpi-dev xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran-13 groff-base ibverbs-providers intltool-debian libarchive-zip-perl libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost1.83-dev libbsd0 libcbor0.10 libdebhelper-perl libdw1 libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfido2-1 libfile-stripnondeterminism-perl libgfortran-13-dev libgfortran5 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu74 libjs-jquery libjs-jquery-ui libltdl-dev libltdl7 libmagic-mgc libmagic1 libmunge2 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix-dev libpmix2 libpsm-infinipath1 libpsm2-2 libpthread-stubs0-dev librdmacm1 libsub-override-perl libtool libuchardet0 libucx0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf sbuild-build-depends-main-dummy sgml-base x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 63.8 MB of archives. After this operation, 361 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [716 B] Get:2 http://ftpmaster.internal/ubuntu noble/universe amd64 autoconf-archive all 20220903-3 [681 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 sgml-base all 1.31 [11.4 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libbsd0 amd64 0.11.7-4 [41.4 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libelf1 amd64 0.190-1 [57.0 kB] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libicu74 amd64 74.2-1ubuntu1 [10.9 MB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libxml2 amd64 2.9.14+dfsg-1.3build3 [762 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libmagic-mgc amd64 1:5.45-2 [307 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmagic1 amd64 1:5.45-2 [86.1 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 file amd64 1:5.45-2 [21.9 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 gettext-base amd64 0.21-14 [38.3 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libuchardet0 amd64 0.0.8-1 [75.3 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 groff-base amd64 1.23.0-3 [1023 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libedit2 amd64 3.1-20230828-1 [95.8 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libcbor0.10 amd64 0.10.2-1.1ubuntu1 [25.7 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libfido2-1 amd64 1.14.0-1 [84.9 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libnuma1 amd64 2.0.16-1 [22.6 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libpipeline1 amd64 1.5.7-1 [23.3 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libxau6 amd64 1:1.0.9-1build5 [7634 B] Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu5 [10.9 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb1 amd64 1.15-1 [48.0 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libx11-data all 2:1.8.7-1 [115 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libx11-6 amd64 2:1.8.7-1 [642 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libxext6 amd64 2:1.3.4-1build1 [31.8 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 man-db amd64 2.12.0-1 [1229 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 openssh-client amd64 1:9.4p1-1ubuntu1 [913 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 m4 amd64 1.4.19-4 [243 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 autoconf all 2.71-3 [339 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 automake all 1:1.16.5-1.3 [558 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 autopoint all 0.21-14 [422 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libdebhelper-perl all 13.11.8ubuntu1 [85.9 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 libtool all 2.4.7-7 [166 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 dh-autoreconf all 20 [16.1 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-override-perl all 0.10-1 [10.0 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libdw1 amd64 0.190-1 [260 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 debugedit amd64 1:5.0-5 [46.1 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 dwz amd64 0.15-1 [112 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 gettext amd64 0.21-14 [865 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 debhelper all 13.11.8ubuntu1 [940 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 13.2.0-9ubuntu1 [891 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-9ubuntu1 [941 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-9ubuntu1 [11.4 MB] Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libnl-3-200 amd64 3.7.0-0.2 [57.4 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libnl-route-3-200 amd64 3.7.0-0.2 [189 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libibverbs1 amd64 48.0-1 [67.8 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 ibverbs-providers amd64 48.0-1 [369 kB] Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost1.83-dev amd64 1.83.0-1ubuntu3 [10.7 MB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-atomic1.83.0 amd64 1.83.0-1ubuntu3 [240 kB] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-atomic1.83-dev amd64 1.83.0-1ubuntu3 [235 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libboost-filesystem1.83.0 amd64 1.83.0-1ubuntu3 [283 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-system1.83.0 amd64 1.83.0-1ubuntu3 [236 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-system1.83-dev amd64 1.83.0-1ubuntu3 [231 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libboost-filesystem1.83-dev amd64 1.83.0-1ubuntu3 [301 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libboost-filesystem-dev amd64 1.83.0.1ubuntu2 [4096 B] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libboost-system-dev amd64 1.83.0.1ubuntu2 [4206 B] Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libevent-2.1-7 amd64 2.1.12-stable-9 [144 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-9 [91.2 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libevent-extra-2.1-7 amd64 2.1.12-stable-9 [64.0 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-9 [7802 B] Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libevent-openssl-2.1-7 amd64 2.1.12-stable-9 [15.8 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libevent-dev amd64 2.1.12-stable-9 [273 kB] Get:69 http://ftpmaster.internal/ubuntu noble/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [178 kB] Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 libpsm2-2 amd64 11.2.185-2 [196 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 librdmacm1 amd64 48.0-1 [70.7 kB] Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 libfabric1 amd64 1.17.0-3 [665 kB] Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libhwloc15 amd64 2.10.0-1 [171 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libltdl7 amd64 2.4.7-7 [40.5 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libltdl-dev amd64 2.4.7-7 [169 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libnl-3-dev amd64 3.7.0-0.2 [101 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libnl-route-3-dev amd64 3.7.0-0.2 [216 kB] Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libmunge2 amd64 0.5.15-2 [15.3 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpciaccess0 amd64 0.17-3 [18.9 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu1 [11.5 kB] Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1 [38.3 kB] Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libhwloc-plugins amd64 2.10.0-1 [15.8 kB] Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libpmix2 amd64 5.0.1-4 [695 kB] Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libucx0 amd64 1.15.0-1 [989 kB] Get:87 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libopenmpi3 amd64 4.1.6-2ubuntu1 [2564 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libnuma-dev amd64 2.0.16-1 [36.3 kB] Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libhwloc-dev amd64 2.10.0-1 [267 kB] Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libpmix-dev amd64 5.0.1-4 [4013 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libpthread-stubs0-dev amd64 0.4-1build2 [5516 B] Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 x11proto-dev all 2023.2-1 [602 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libxau-dev amd64 1:1.0.9-1build5 [9724 B] Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libxdmcp-dev amd64 1:1.1.3-0ubuntu5 [26.5 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 xtrans-dev all 1.4.0-1 [68.9 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb1-dev amd64 1.15-1 [85.8 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libx11-dev amd64 2:1.8.7-1 [731 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 openmpi-common all 4.1.6-2ubuntu1 [169 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 openmpi-bin amd64 4.1.6-2ubuntu1 [114 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libibverbs-dev amd64 48.0-1 [676 kB] Get:103 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libopenmpi-dev amd64 4.1.6-2ubuntu1 [864 kB] Preconfiguring packages ... Fetched 63.8 MB in 1s (88.0 MB/s) Selecting previously unselected package autoconf-archive. (Reading database ... 13841 files and directories currently installed.) Preparing to unpack .../000-autoconf-archive_20220903-3_all.deb ... Unpacking autoconf-archive (20220903-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../002-libbsd0_0.11.7-4_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-4) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../003-libelf1_0.190-1_amd64.deb ... Unpacking libelf1:amd64 (0.190-1) ... Selecting previously unselected package libicu74:amd64. Preparing to unpack .../004-libicu74_74.2-1ubuntu1_amd64.deb ... Unpacking libicu74:amd64 (74.2-1ubuntu1) ... Selecting previously unselected package libxml2:amd64. 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Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libnl-3-200:amd64 (3.7.0-0.2) ... Setting up debugedit (1:5.0-5) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libhwloc-dev:amd64 (2.10.0-1) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.1ubuntu2) ... Setting up libxcb1-dev:amd64 (1.15-1) ... Setting up openssh-client (1:9.4p1-1ubuntu1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libx11-dev:amd64 (2:1.8.7-1) ... Setting up libxext6:amd64 (2:1.3.4-1build1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libnl-route-3-200:amd64 (3.7.0-0.2) ... Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu1) ... Setting up libnl-3-dev:amd64 (3.7.0-0.2) ... Setting up libibverbs1:amd64 (48.0-1) ... Setting up ibverbs-providers:amd64 (48.0-1) ... Setting up debhelper (13.11.8ubuntu1) ... Setting up libhwloc-plugins:amd64 (2.10.0-1) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.2) ... Setting up librdmacm1:amd64 (48.0-1) ... Setting up libucx0:amd64 (1.15.0-1) ... Setting up libpmix2:amd64 (5.0.1-4) ... Setting up libibverbs-dev:amd64 (48.0-1) ... Setting up libpmix-dev:amd64 (5.0.1-4) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libopenmpi3:amd64 (4.1.6-2ubuntu1) ... Setting up openmpi-bin (4.1.6-2ubuntu1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (4.1.6-2ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:28 UTC 2023 amd64 (x86_64) Toolchain package versions: binutils_2.41.50.20231214-1ubuntu1 dpkg-dev_1.22.1ubuntu5 g++-13_13.2.0-9ubuntu1 gcc-13_13.2.0-9ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.7 apt-utils_2.7.7 autoconf_2.71-3 autoconf-archive_20220903-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13ubuntu5 base-passwd_3.6.3 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41.50.20231214-1ubuntu1 binutils-common_2.41.50.20231214-1ubuntu1 binutils-x86-64-linux-gnu_2.41.50.20231214-1ubuntu1 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.4-2ubuntu1 cpp_4:13.2.0-2ubuntu1 cpp-13_13.2.0-9ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.8ubuntu1 debianutils_5.14 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.1ubuntu5 dpkg-dev_1.22.1ubuntu5 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-2ubuntu1 g++-13_13.2.0-9ubuntu1 gcc_4:13.2.0-2ubuntu1 gcc-13_13.2.0-9ubuntu1 gcc-13-base_13.2.0-9ubuntu1 gettext_0.21-14 gettext-base_0.21-14 gfortran-13_13.2.0-9ubuntu1 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 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libc-bin_2.38-3ubuntu1 libc-dev-bin_2.38-3ubuntu1 libc6_2.38-3ubuntu1 libc6-dev_2.38-3ubuntu1 libcap-ng0_0.8.3-3 libcap2_1:2.66-4ubuntu1 libcbor0.10_0.10.2-1.1ubuntu1 libcc1-0_13.2.0-9ubuntu1 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-5ubuntu1 libctf-nobfd0_2.41.50.20231214-1ubuntu1 libctf0_2.41.50.20231214-1ubuntu1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271ubuntu1 libdebhelper-perl_13.11.8ubuntu1 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdpkg-perl_1.22.1ubuntu5 libdw1_0.190-1 libedit2_3.1-20230828-1 libelf1_0.190-1 libevent-2.1-7_2.1.12-stable-9 libevent-core-2.1-7_2.1.12-stable-9 libevent-dev_2.1.12-stable-9 libevent-extra-2.1-7_2.1.12-stable-9 libevent-openssl-2.1-7_2.1.12-stable-9 libevent-pthreads-2.1-7_2.1.12-stable-9 libext2fs2_1.47.0-2ubuntu1 libfabric1_1.17.0-3 libfakeroot_1.32.2-1 libfdisk1_2.39.2-6ubuntu1 libffi8_3.4.4-2 libfido2-1_1.14.0-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-9ubuntu1 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sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 systemd_255-1ubuntu1 systemd-dev_255-1ubuntu1 systemd-sysv_255-1ubuntu1 sysvinit-utils_3.08-3ubuntu1 tar_1.34+dfsg-1.2ubuntu2 tzdata_2023c-9ubuntu1 ubuntu-keyring_2023.11.28.1 usrmerge_35ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 x11proto-dev_2023.2-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3ubuntu1 zlib1g-dev_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: aevol Binary: aevol Architecture: any Version: 5.0+ds-3build1 Maintainer: Debian Med Packaging Team Uploaders: David Parsons Homepage: http://www.aevol.fr/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/aevol Vcs-Git: https://salsa.debian.org/med-team/aevol.git Testsuite: autopkgtest Testsuite-Triggers: xauth, xvfb Build-Depends: debhelper-compat (= 13), zlib1g-dev, libx11-dev, libboost-dev, libboost-system-dev, libboost-filesystem-dev, libopenmpi-dev, autoconf-archive Package-List: aevol deb science optional arch=any Checksums-Sha1: 26828053597f72576fda8959cc519eb781bc0920 295988 aevol_5.0+ds.orig.tar.xz 84b2aa147a69df66b7d8be4057a9d1e46470b08e 6264 aevol_5.0+ds-3build1.debian.tar.xz Checksums-Sha256: f22611369bc07279dacda1430cb22d01bf6173a692f5f10c76ad608db969bf8f 295988 aevol_5.0+ds.orig.tar.xz 43c43e1e2db6b57cf32463f8e00b8fe7eea477489d628735d903d48c4b00d0b2 6264 aevol_5.0+ds-3build1.debian.tar.xz Files: 6a40a1bb0f147354653b77990ee4c4b1 295988 aevol_5.0+ds.orig.tar.xz d13bc3348260424210394d57e4d6685a 6264 aevol_5.0+ds-3build1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEVovyKmYzfL/Jprm3LIPbyOm9DjcFAmWBsAoACgkQLIPbyOm9 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found dpkg-source: info: extracting aevol in /<> dpkg-source: info: unpacking aevol_5.0+ds.orig.tar.xz dpkg-source: info: unpacking aevol_5.0+ds-3build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying automake.patch dpkg-source: info: applying groff-message.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27576086 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27576086 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27576086 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package aevol dpkg-buildpackage: info: source version 5.0+ds-3build1 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:45: installing './compile' configure.ac:51: installing './config.guess' configure.ac:51: installing './config.sub' configure.ac:23: installing './install-sh' configure.ac:23: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for clang-omp++... no checking for clang++... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking whether g++ supports C++14 features by default... yes checking whether g++ supports C++11 features by default... yes checking for ranlib... ranlib checking for g++ option to support OpenMP... -fopenmp checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for omp.h... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for boostlib >= 1.55 (105500)... yes checking whether the Boost::System library is available... yes checking for exit in -lboost_system... yes checking whether the Boost::Filesystem library is available... yes checking for exit in -lboost_filesystem... yes checking for cos in -lm... yes checking for gzread in -lz... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for _Bool... no checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for size_t... yes checking for uint32_t... yes checking for uint8_t... yes checking for floor... yes checking for memset... yes checking for mkdir... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for gzread... yes checking whether to enable graphical outputs... yes checking how to run the C++ preprocessor... g++ -E checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking for XOpenDisplay in -lX11... yes checking for X11/Xlib.h... yes checking for X11/Xutil.h... yes checking for X11/keysym.h... yes checking for X11/Xatom.h... yes checking for X11/cursorfont.h... yes checking whether to use compile time optimization... yes checking whether to use normalized fitness... no checking whether to use a particular period for the Mersenne Twister... 607 checking whether to use trivial Mersenne Twister jumps... no checking whether to use devel features... no checking whether to use debugging features... no checking whether to enable profiling... no checking whether to use raevol... no checking whether to use BLAS library... no checking whether to use MKL library... no checking whether to use ATLAS library... no checking whether to use TBB library... no checking whether to use tracing... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/libaevol/Makefile config.status: creating src/libaevol/SFMT-src-1.4/Makefile config.status: creating src/post_treatments/Makefile config.status: creating doc/Makefile config.status: executing depfiles commands config.status: executing user_warning commands config.status: Consider using make clean if you are re-configuring. dh_auto_build make -j4 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' Making all in libaevol make[3]: Entering directory '/<>/src/libaevol' Making all in SFMT-src-1.4 make[4]: Entering directory '/<>/src/libaevol/SFMT-src-1.4' gcc -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I./ -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o libsfmt_a-SFMT.o `test -f 'SFMT.c' || echo './'`SFMT.c g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I./ -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o jump/libsfmt_a-SFMT-jump.o `test -f 'jump/SFMT-jump.cpp' || echo './'`jump/SFMT-jump.cpp rm -f libsfmt.a ar cru libsfmt.a libsfmt_a-SFMT.o jump/libsfmt_a-SFMT-jump.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libsfmt.a make[4]: Leaving directory '/<>/src/libaevol/SFMT-src-1.4' Making all in . make[4]: Entering directory '/<>/src/libaevol' g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ 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-D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o World.o World.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 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-DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o Individual_X11.o Individual_X11.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o ExpManager_X11.o ExpManager_X11.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o X11Window.o X11Window.cpp X11Window.cpp: In function ‘aevol::X11Window::color(double)’: X11Window.cpp:523:28: warning: ‘%02x’ directive writing between 2 and 4 bytes into a region of size between 0 and 3 [-Wformat-overflow=] 523 | sprintf(color, "#%02x%02x%02x", red, green, blue); | ^~~~ X11Window.cpp:523:18: note: directive argument in the range [0, 32767] 523 | sprintf(color, "#%02x%02x%02x", red, green, blue); | ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from X11Window.cpp:33: In function ‘sprintf’, inlined from ‘aevol::X11Window::color(double)’ at X11Window.cpp:523:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 8 and 22 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ rm -f libaevol.a ar cru libaevol.a Alignment.o Codon.o Dna.o Dump.o ExpManager.o ExpSetup.o GeneticUnit.o GridCell.o Individual.o IndividualFactory.o Logging.o Mutation.o PointMutation.o SmallInsertion.o SmallDeletion.o Duplication.o Deletion.o Translocation.o Inversion.o InsertionHT.o ReplacementHT.o Observable.o OutputManager.o MutationParams.o PhenotypicTarget.o PhenotypicTargetHandler.o Point.o Protein.o JumpingMT.o ReplicationReport.o DnaReplicationReport.o Rna.o Stats.o StatRecord.o ae_string.o Tree.o Utils.o VisAVis.o Selection.o AbstractFuzzy.o HybridFuzzy.o FuzzyFactory.o Fuzzy.o Habitat.o ParamLoader.o ParameterLine.o AeTime.o World.o HabitatFactory.o Individual_X11.o ExpManager_X11.o X11Window.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libaevol.a make[4]: Leaving directory '/<>/src/libaevol' make[3]: Leaving directory '/<>/src/libaevol' Making all in post_treatments make[3]: Entering directory '/<>/src/post_treatments' g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o ancestor_stats.o ancestor_stats.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o ancestor_robustness.o ancestor_robustness.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o IndivAnalysis.o IndivAnalysis.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o create_eps.o create_eps.cpp : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition ancestor_robustness.cpp:48:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 48 | static char* output_file_name = "robustness_summary.txt"; | ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o extract.o extract.cpp : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o lineage.o lineage.cpp : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o mutagenesis.o mutagenesis.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o robustness.o robustness.cpp : warning: "_FORTIFY_SOURCE" redefined : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o view.o view.cpp : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -fopenmp -L../../src/libaevol -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o aevol_misc_ancestor_stats ancestor_stats.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm robustness.cpp: In function ‘main’: robustness.cpp:115:27: warning: ‘/robustness-summary-’ directive output may be truncated writing 20 bytes into a region of size between 1 and 255 [-Wformat-truncation=] 115 | snprintf(filename, 255, "%s/robustness-summary-%" PRId64 "-i%" PRId32 "-r%" PRId32, | ^ In file included from /usr/include/stdio.h:964, from /usr/include/c++/13/cstdio:42, from robustness.cpp:33: In function ‘snprintf’, inlined from ‘main’ at robustness.cpp:115:11: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 28 and 321 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ robustness.cpp: In function ‘main’: robustness.cpp:121:27: warning: ‘/robustness-detailed-’ directive output may be truncated writing 21 bytes into a region of size between 1 and 255 [-Wformat-truncation=] 121 | snprintf(filename, 255, "%s/robustness-detailed-%" PRId64 "-i%" PRId32 "-r%" PRId32, | ^ In function ‘snprintf’, inlined from ‘main’ at robustness.cpp:121:11: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 29 and 322 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -fopenmp -L../../src/libaevol -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o aevol_misc_ancestor_robustness ancestor_robustness.o IndivAnalysis.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -fopenmp -L../../src/libaevol -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o aevol_misc_create_eps create_eps.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -fopenmp -L../../src/libaevol -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o aevol_misc_extract extract.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm In member function ‘do_inversion’, inlined from ‘do_inversion’ at ../libaevol/Dna.cpp:1648:6, inlined from ‘undergo_this_mutation’ at ../libaevol/Dna.cpp:2198:19: ../libaevol/Dna.cpp:1687:32: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1687 | inverted_segment[seg_length] = '\0'; | ^ ../libaevol/Dna.cpp:1668:45: note: at offset [-2147483648, -1] into destination object of size [0, 2147483647] allocated by ‘operator new []’ 1668 | inverted_segment = new char[seg_length + 1]; | ^ g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -fopenmp -L../../src/libaevol -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o aevol_misc_lineage lineage.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -fopenmp -L../../src/libaevol -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o aevol_misc_mutagenesis mutagenesis.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -fopenmp -L../../src/libaevol -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o aevol_misc_robustness robustness.o IndivAnalysis.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -fopenmp -L../../src/libaevol -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o aevol_misc_view view.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm In member function ‘do_inversion’, inlined from ‘do_inversion’ at ../libaevol/Dna.cpp:1648:6, inlined from ‘undergo_this_mutation’ at ../libaevol/Dna.cpp:2198:19: ../libaevol/Dna.cpp:1687:32: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1687 | inverted_segment[seg_length] = '\0'; | ^ ../libaevol/Dna.cpp:1668:45: note: at offset [-2147483648, -1] into destination object of size [0, 2147483647] allocated by ‘operator new []’ 1668 | inverted_segment = new char[seg_length + 1]; | ^ make[3]: Leaving directory '/<>/src/post_treatments' make[3]: Entering directory '/<>/src' g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o aevol_run.o aevol_run.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o aevol_create.o aevol_create.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o aevol_modify.o aevol_modify.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDBOOL_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=3 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -c -o aevol_propagate-aevol_propagate.o `test -f 'aevol_propagate.cpp' || echo './'`aevol_propagate.cpp : warning: "_FORTIFY_SOURCE" redefined : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o aevol_create aevol_create.o ../src/libaevol/libaevol.a ../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o aevol_run aevol_run.o ../src/libaevol/libaevol.a ../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o aevol_modify aevol_modify.o ../src/libaevol/libaevol.a ../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/aevol-5.0+ds-3build1 -fopenmp -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o aevol_propagate aevol_propagate-aevol_propagate.o ../src/libaevol/libaevol.a ../src/libaevol/SFMT-src-1.4/libsfmt.a -lboost_system -lboost_filesystem -lX11 -lz -lm make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making all in doc make[2]: Entering directory '/<>/doc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' Making check in libaevol make[3]: Entering directory '/<>/src/libaevol' Making check in SFMT-src-1.4 make[4]: Entering directory '/<>/src/libaevol/SFMT-src-1.4' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/src/libaevol/SFMT-src-1.4' Making check in . make[4]: Entering directory '/<>/src/libaevol' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/<>/src/libaevol' make[3]: Leaving directory '/<>/src/libaevol' Making check in post_treatments make[3]: Entering directory '/<>/src/post_treatments' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/post_treatments' make[3]: Entering directory '/<>/src' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making check in doc make[2]: Entering directory '/<>/doc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/aevol/ make -j4 install DESTDIR=/<>/aevol-5.0\+ds/debian/aevol AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' Making install in libaevol make[3]: Entering directory '/<>/src/libaevol' Making install in SFMT-src-1.4 make[4]: Entering directory '/<>/src/libaevol/SFMT-src-1.4' make[5]: Entering directory '/<>/src/libaevol/SFMT-src-1.4' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/src/libaevol/SFMT-src-1.4' make[4]: Leaving directory '/<>/src/libaevol/SFMT-src-1.4' Making install in . make[4]: Entering directory '/<>/src/libaevol' make[5]: Entering directory '/<>/src/libaevol' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/src/libaevol' make[4]: Leaving directory '/<>/src/libaevol' make[3]: Leaving directory '/<>/src/libaevol' Making install in post_treatments make[3]: Entering directory '/<>/src/post_treatments' make[4]: Entering directory '/<>/src/post_treatments' make[4]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/<>/debian/aevol/usr/bin' /usr/bin/install -c aevol_misc_ancestor_stats aevol_misc_ancestor_robustness aevol_misc_create_eps aevol_misc_extract aevol_misc_lineage aevol_misc_mutagenesis aevol_misc_robustness aevol_misc_view '/<>/debian/aevol/usr/bin' make[4]: Leaving directory '/<>/src/post_treatments' make[3]: Leaving directory '/<>/src/post_treatments' make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' make[4]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/<>/debian/aevol/usr/bin' /usr/bin/install -c aevol_run aevol_create aevol_modify aevol_propagate '/<>/debian/aevol/usr/bin' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in doc make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/aevol/usr/share/man/man1' /usr/bin/install -c -m 644 aevol_create.1 aevol_run.1 aevol_modify.1 aevol_propagate.1 aevol_misc_lineage.1 aevol_misc_ancestor_stats.1 aevol_misc_robustness.1 aevol_misc_compute_pop_stats.1 aevol_misc_view.1 aevol_misc_create_eps.1 aevol_misc_extract.1 aevol_misc_gene_families.1 '/<>/debian/aevol/usr/share/man/man1' make[3]: Leaving directory '/<>/doc' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a debugedit: debian/aevol/usr/bin/aevol_misc_ancestor_stats: Unknown DWARF DW_FORM_0x1f21 a6de0c15d562e850f192f8ceb201713e96b3a2c2 debugedit: debian/aevol/usr/bin/aevol_misc_view: Unknown DWARF DW_FORM_0x1f21 ab3eac934a1f3203642ac2ecc93c5826cba96688 debugedit: debian/aevol/usr/bin/aevol_misc_ancestor_robustness: Unknown DWARF DW_FORM_0x1f21 71624a1acada62402f37a10540e7ac1d1f6febcb debugedit: debian/aevol/usr/bin/aevol_run: Unknown DWARF DW_FORM_0x1f21 1c039ff6196bd70b74b649807d47c7a48b9f054a debugedit: debian/aevol/usr/bin/aevol_misc_create_eps: Unknown DWARF DW_FORM_0x1f21 0d0e0b8ca4e0c0db9e75ff42a6592d16dd937fd1 debugedit: debian/aevol/usr/bin/aevol_misc_lineage: Unknown DWARF DW_FORM_0x1f21 cd27146e80cf51d3822a4b89f9b25991df308952 debugedit: debian/aevol/usr/bin/aevol_misc_robustness: Unknown DWARF DW_FORM_0x1f21 bac26911c0e9fa4d02bcb85f09a530a31d078d3e debugedit: debian/aevol/usr/bin/aevol_create: Unknown DWARF DW_FORM_0x1f21 0c314673f59e274b5e2bbf94b496b9a3fe8d3bc0 debugedit: debian/aevol/usr/bin/aevol_misc_mutagenesis: Unknown DWARF DW_FORM_0x1f21 aac3a8833c9aa581b4418af144f766cad62be6ec debugedit: debian/aevol/usr/bin/aevol_modify: Unknown DWARF DW_FORM_0x1f21 84b3e0ec8225023f63e4caac8625bfec08e758d8 debugedit: debian/aevol/usr/bin/aevol_propagate: Unknown DWARF DW_FORM_0x1f20 c6b9ccae3e9307019d2bec50992a8c5f960a06e2 debugedit: debian/aevol/usr/bin/aevol_misc_extract: Unknown DWARF DW_FORM_0x1f21 708b6475355995c34e82d98d8195a443ca62f823 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing aevol (in debian/aevol); do_strip: , oemstrip: pkgstriptranslations: processing aevol-dbgsym (in debian/.debhelper/aevol/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/aevol/DEBIAN/control, package aevol, directory debian/aevol pkgstripfiles: Running PNG optimization (using 4 cpus) for package aevol ... pkgstripfiles: No PNG files. dpkg-deb: building package 'aevol' in '../aevol_5.0+ds-3build1_amd64.deb'. pkgstripfiles: processing control file: debian/.debhelper/aevol/dbgsym-root/DEBIAN/control, package aevol-dbgsym, directory debian/.debhelper/aevol/dbgsym-root dpkg-deb: building package 'aevol-dbgsym' in 'debian/.debhelper/scratch-space/build-aevol/aevol-dbgsym_5.0+ds-3build1_amd64.deb'. Renaming aevol-dbgsym_5.0+ds-3build1_amd64.deb to aevol-dbgsym_5.0+ds-3build1_amd64.ddeb dpkg-genbuildinfo --build=binary -O../aevol_5.0+ds-3build1_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../aevol_5.0+ds-3build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-12-19T15:07:56Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ aevol_5.0+ds-3build1_amd64.changes: ----------------------------------- Format: 1.8 Date: Tue, 19 Dec 2023 15:45:36 +0100 Source: aevol Binary: aevol Built-For-Profiles: noudeb Architecture: amd64 Version: 5.0+ds-3build1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: aevol - digital genetics model to run Evolution Experiments in silico Changes: aevol (5.0+ds-3build1) noble; urgency=medium . * No-change rebuild for boost defaults change. Checksums-Sha1: f2cd6fce0bab8e752b04f206b16751de2d19c40c 5812308 aevol-dbgsym_5.0+ds-3build1_amd64.ddeb f5481a8cb4410ef918bd7bf443edafe02e6ee855 8263 aevol_5.0+ds-3build1_amd64.buildinfo bdc9016f2a315e1bd5f1f85ffc631ce9d7e37a34 450110 aevol_5.0+ds-3build1_amd64.deb Checksums-Sha256: 370919aac8851fd68348d34c76defd728b5359fc0e30e4e3b6d1f242c1514d9f 5812308 aevol-dbgsym_5.0+ds-3build1_amd64.ddeb cf3fd5a5c814f41cd1deb0289aefbe78d2c3b6b05c1ad65387aafab30ecb18dc 8263 aevol_5.0+ds-3build1_amd64.buildinfo c93f8d033ca11fdc53d238968809c92ef3ccb1055fad6aec325f6467acf372d0 450110 aevol_5.0+ds-3build1_amd64.deb Files: 042771dd2274d771ab26000e60012bfb 5812308 debug optional aevol-dbgsym_5.0+ds-3build1_amd64.ddeb 8b01f7dc124f2184eebdee148826f45c 8263 science optional aevol_5.0+ds-3build1_amd64.buildinfo f189e380dd6b8dc5e6d864efa981f280 450110 science optional aevol_5.0+ds-3build1_amd64.deb /<>/aevol_5.0+ds-3build1_amd64.changes.new could not be renamed to /<>/aevol_5.0+ds-3build1_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: aevol Binary: aevol aevol-dbgsym Architecture: amd64 Version: 5.0+ds-3build1 Checksums-Md5: 042771dd2274d771ab26000e60012bfb 5812308 aevol-dbgsym_5.0+ds-3build1_amd64.ddeb f189e380dd6b8dc5e6d864efa981f280 450110 aevol_5.0+ds-3build1_amd64.deb Checksums-Sha1: f2cd6fce0bab8e752b04f206b16751de2d19c40c 5812308 aevol-dbgsym_5.0+ds-3build1_amd64.ddeb bdc9016f2a315e1bd5f1f85ffc631ce9d7e37a34 450110 aevol_5.0+ds-3build1_amd64.deb Checksums-Sha256: 370919aac8851fd68348d34c76defd728b5359fc0e30e4e3b6d1f242c1514d9f 5812308 aevol-dbgsym_5.0+ds-3build1_amd64.ddeb c93f8d033ca11fdc53d238968809c92ef3ccb1055fad6aec325f6467acf372d0 450110 aevol_5.0+ds-3build1_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Tue, 19 Dec 2023 15:07:56 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.137ubuntu1), autoconf (= 2.71-3), autoconf-archive (= 20220903-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13ubuntu5), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), binutils (= 2.41.50.20231214-1ubuntu1), binutils-common (= 2.41.50.20231214-1ubuntu1), binutils-x86-64-linux-gnu (= 2.41.50.20231214-1ubuntu1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), coreutils (= 9.4-2ubuntu1), cpp (= 4:13.2.0-2ubuntu1), cpp-13 (= 13.2.0-9ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.8ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1ubuntu5), dpkg-dev (= 1.22.1ubuntu5), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2ubuntu1), g++-13 (= 13.2.0-9ubuntu1), gcc (= 4:13.2.0-2ubuntu1), gcc-13 (= 13.2.0-9ubuntu1), gcc-13-base (= 13.2.0-9ubuntu1), gettext (= 0.21-14), gettext-base (= 0.21-14), gfortran-13 (= 13.2.0-9ubuntu1), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), ibverbs-providers (= 48.0-1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-9ubuntu1), libatomic1 (= 13.2.0-9ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbinutils (= 2.41.50.20231214-1ubuntu1), libblkid1 (= 2.39.2-6ubuntu1), libboost-atomic1.83-dev (= 1.83.0-1ubuntu3), libboost-atomic1.83.0 (= 1.83.0-1ubuntu3), libboost-dev (= 1.83.0.1ubuntu2), libboost-filesystem-dev (= 1.83.0.1ubuntu2), libboost-filesystem1.83-dev (= 1.83.0-1ubuntu3), libboost-filesystem1.83.0 (= 1.83.0-1ubuntu3), libboost-system-dev (= 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2.1.12-stable-9), libevent-pthreads-2.1-7 (= 2.1.12-stable-9), libfabric1 (= 1.17.0-3), libfido2-1 (= 1.14.0-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-9ubuntu1), libgcc-s1 (= 13.2.0-9ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgfortran-13-dev (= 13.2.0-9ubuntu1), libgfortran5 (= 13.2.0-9ubuntu1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgomp1 (= 13.2.0-9ubuntu1), libgpg-error0 (= 1.47-3build1), libgprofng0 (= 2.41.50.20231214-1ubuntu1), libgssapi-krb5-2 (= 1.20.1-5build1), libhwasan0 (= 13.2.0-9ubuntu1), libhwloc-dev (= 2.10.0-1), libhwloc-plugins (= 2.10.0-1), libhwloc15 (= 2.10.0-1), libibverbs-dev (= 48.0-1), libibverbs1 (= 48.0-1), libicu74 (= 74.2-1ubuntu1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-9ubuntu1), libjansson4 (= 2.14-2), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-ui (= 1.13.2+dfsg-1), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-5build1), 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libpthread-stubs0-dev (= 0.4-1build2), libquadmath0 (= 13.2.0-9ubuntu1), librdmacm1 (= 48.0-1), libseccomp2 (= 2.5.4-2ubuntu1), libselinux1 (= 3.5-1build2), libsemanage-common (= 3.5-1build1), libsemanage2 (= 3.5-1build1), libsepol2 (= 3.5-2), libsframe1 (= 2.41.50.20231214-1ubuntu1), libsmartcols1 (= 2.39.2-6ubuntu1), libssl3 (= 3.0.10-1ubuntu3), libstdc++-13-dev (= 13.2.0-9ubuntu1), libstdc++6 (= 13.2.0-9ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255-1ubuntu1), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-9ubuntu1), libubsan1 (= 13.2.0-9ubuntu1), libuchardet0 (= 0.0.8-1), libucx0 (= 1.15.0-1), libudev1 (= 255-1ubuntu1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-6ubuntu1), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libx11-dev (= 2:1.8.7-1), libxau-dev (= 1:1.0.9-1build5), libxau6 (= 1:1.0.9-1build5), libxcb1 (= 1.15-1), libxcb1-dev (= 1.15-1), libxdmcp-dev (= 1:1.1.3-0ubuntu5), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxml2 (= 2.9.14+dfsg-1.3build3), libxnvctrl0 (= 510.47.03-0ubuntu1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.0-14.14), login (= 1:4.13+dfsg1-3ubuntu1), lto-disabled-list (= 44), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), ocl-icd-libopencl1 (= 2.3.2-1), openmpi-bin (= 4.1.6-2ubuntu1), openmpi-common (= 4.1.6-2ubuntu1), openssh-client (= 1:9.4p1-1ubuntu1), passwd (= 1:4.13+dfsg1-3ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-10ubuntu1), perl-base (= 5.36.0-10ubuntu1), perl-modules-5.36 (= 5.36.0-10ubuntu1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sgml-base (= 1.31), sysvinit-utils (= 3.08-3ubuntu1), tar (= 1.34+dfsg-1.2ubuntu2), util-linux (= 2.39.2-6ubuntu1), x11proto-dev (= 2023.2-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.4.5-0.1), zlib1g (= 1:1.3.dfsg-3ubuntu1), zlib1g-dev (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1702997136" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ aevol_5.0+ds-3build1_amd64.deb ------------------------------ new Debian package, version 2.0. size 450110 bytes: control archive=1861 bytes. 1433 bytes, 27 lines control 2169 bytes, 31 lines md5sums Package: aevol Version: 5.0+ds-3build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2187 Depends: libboost-filesystem1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libstdc++6 (>= 13.1), libx11-6, zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: http://www.aevol.fr/ Description: digital genetics model to run Evolution Experiments in silico Aevol is a digital genetics model: populations of digital organisms are subjected to a process of selection and variation, which creates a Darwinian dynamics. . By modifying the characteristics of selection (e.g. population size, type of environment, environmental variations) or variation (e.g. mutation rates, chromosomal rearrangement rates, types of rearrangements, horizontal transfer), one can study experimentally the impact of these parameters on the structure of the evolved organisms. In particular, since Aevol integrates a precise and realistic model of the genome, it allows for the study of structural variations of the genome (e.g. number of genes, synteny, proportion of coding sequences). . The simulation platform comes along with a set of tools for analysing phylogenies and measuring many characteristics of the organisms and populations along evolution. drwxr-xr-x root/root 0 2023-12-19 14:45 ./ drwxr-xr-x root/root 0 2023-12-19 14:45 ./usr/ drwxr-xr-x root/root 0 2023-12-19 14:45 ./usr/bin/ -rwxr-xr-x root/root 182960 2023-12-19 14:45 ./usr/bin/aevol_create -rwxr-xr-x root/root 199448 2023-12-19 14:45 ./usr/bin/aevol_misc_ancestor_robustness -rwxr-xr-x root/root 187056 2023-12-19 14:45 ./usr/bin/aevol_misc_ancestor_stats -rwxr-xr-x root/root 146096 2023-12-19 14:45 ./usr/bin/aevol_misc_create_eps -rwxr-xr-x root/root 133872 2023-12-19 14:45 ./usr/bin/aevol_misc_extract -rwxr-xr-x root/root 162576 2023-12-19 14:45 ./usr/bin/aevol_misc_lineage -rwxr-xr-x root/root 203504 2023-12-19 14:45 ./usr/bin/aevol_misc_mutagenesis -rwxr-xr-x root/root 199408 2023-12-19 14:45 ./usr/bin/aevol_misc_robustness -rwxr-xr-x root/root 150544 2023-12-19 14:45 ./usr/bin/aevol_misc_view -rwxr-xr-x root/root 183344 2023-12-19 14:45 ./usr/bin/aevol_modify -rwxr-xr-x root/root 179312 2023-12-19 14:45 ./usr/bin/aevol_propagate -rwxr-xr-x root/root 253168 2023-12-19 14:45 ./usr/bin/aevol_run drwxr-xr-x root/root 0 2023-12-19 14:45 ./usr/share/ drwxr-xr-x root/root 0 2023-12-19 14:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-19 14:45 ./usr/share/doc/aevol/ -rw-r--r-- root/root 6502 2016-06-07 13:03 ./usr/share/doc/aevol/NEWS.gz -rw-r--r-- root/root 2249 2016-06-23 14:42 ./usr/share/doc/aevol/README -rw-r--r-- root/root 836 2023-12-19 14:45 ./usr/share/doc/aevol/changelog.Debian.gz -rw-r--r-- root/root 3588 2021-11-04 21:44 ./usr/share/doc/aevol/copyright drwxr-xr-x root/root 0 2023-12-19 14:45 ./usr/share/doc/aevol/examples/ drwxr-xr-x root/root 0 2016-07-01 12:58 ./usr/share/doc/aevol/examples/basic/ -rw-r--r-- root/root 1460 2016-07-01 12:33 ./usr/share/doc/aevol/examples/basic/param.in drwxr-xr-x root/root 0 2016-07-01 12:58 ./usr/share/doc/aevol/examples/workflow/ -rw-r--r-- root/root 6661 2016-06-17 13:49 ./usr/share/doc/aevol/examples/workflow/README drwxr-xr-x root/root 0 2016-07-01 12:58 ./usr/share/doc/aevol/examples/workflow/wild_type/ -rw-r--r-- root/root 1292 2016-06-17 13:49 ./usr/share/doc/aevol/examples/workflow/wild_type/param.in drwxr-xr-x root/root 0 2023-12-19 14:45 ./usr/share/man/ drwxr-xr-x root/root 0 2023-12-19 14:45 ./usr/share/man/man1/ -rw-r--r-- root/root 581 2023-12-19 14:45 ./usr/share/man/man1/aevol_create.1.gz -rw-r--r-- root/root 566 2023-12-19 14:45 ./usr/share/man/man1/aevol_misc_ancestor_stats.1.gz -rw-r--r-- root/root 692 2023-12-19 14:45 ./usr/share/man/man1/aevol_misc_compute_pop_stats.1.gz -rw-r--r-- root/root 635 2023-12-19 14:45 ./usr/share/man/man1/aevol_misc_create_eps.1.gz -rw-r--r-- root/root 689 2023-12-19 14:45 ./usr/share/man/man1/aevol_misc_extract.1.gz -rw-r--r-- root/root 541 2023-12-19 14:45 ./usr/share/man/man1/aevol_misc_gene_families.1.gz -rw-r--r-- root/root 662 2023-12-19 14:45 ./usr/share/man/man1/aevol_misc_lineage.1.gz -rw-r--r-- root/root 932 2023-12-19 14:45 ./usr/share/man/man1/aevol_misc_robustness.1.gz -rw-r--r-- root/root 505 2023-12-19 14:45 ./usr/share/man/man1/aevol_misc_view.1.gz -rw-r--r-- root/root 515 2023-12-19 14:45 ./usr/share/man/man1/aevol_modify.1.gz -rw-r--r-- root/root 626 2023-12-19 14:45 ./usr/share/man/man1/aevol_propagate.1.gz -rw-r--r-- root/root 703 2023-12-19 14:45 ./usr/share/man/man1/aevol_run.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 136164 Build-Time: 49 Distribution: noble-proposed Host Architecture: amd64 Install-Time: 9 Job: aevol_5.0+ds-3build1.dsc Machine Architecture: amd64 Package: aevol Package-Time: 59 Source-Version: 5.0+ds-3build1 Space: 136164 Status: successful Version: 5.0+ds-3build1 -------------------------------------------------------------------------------- Finished at 2023-12-19T15:07:56Z Build needed 00:00:59, 136164k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27576086 Scanning for processes to kill in build PACKAGEBUILD-27576086