https://launchpad.net/ubuntu/+source/allelecount/4.2.0-1/+build/20201494 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-036 4.15.0-118-generic #119-Ubuntu SMP Tue Sep 8 12:30:01 UTC 2020 x86_64 Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 28 Oct 19:32:46 ntpdate[1798]: adjust time server 10.211.37.1 offset -0.000385 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20201494 --image-type chroot /home/buildd/filecache-default/720a8366e1260e086c1691fe6381a3f2b1c21d81 Creating target for build PACKAGEBUILD-20201494 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20201494 Starting target for build PACKAGEBUILD-20201494 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20201494 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20201494 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20201494 Updating target for build PACKAGEBUILD-20201494 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [88.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [88.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [113 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main amd64 Packages [1383 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [508 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe amd64 Packages [12.6 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5261 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 Packages [65.5 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [35.5 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe amd64 Packages [205 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [87.4 kB] Fetched 20.7 MB in 5s (4032 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files base-passwd binutils binutils-common binutils-x86-64-linux-gnu cpp-10 g++-10 gcc-10 gcc-10-base libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdebconfclient0 libgcc-10-dev libgcc-s1 libgomp1 libitm1 liblsan0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libstdc++-10-dev libstdc++6 libtsan0 libubsan1 sysvinit-utils tzdata 39 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 217 MB of archives. After this operation, 884 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libcrypt-dev amd64 1:4.4.17-1ubuntu1 [105 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libcrypt1 amd64 1:4.4.17-1ubuntu1 [78.8 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main amd64 base-files amd64 11ubuntu16 [60.5 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libdebconfclient0 amd64 0.254ubuntu1 [6200 B] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 base-passwd amd64 3.5.48 [47.5 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main amd64 sysvinit-utils amd64 2.96-5ubuntu1 [20.8 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcc1-0 amd64 10.2.0-15ubuntu1 [41.2 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main amd64 gcc-10-base amd64 10.2.0-15ubuntu1 [19.5 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgcc-s1 amd64 10.2.0-15ubuntu1 [41.7 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgomp1 amd64 10.2.0-15ubuntu1 [102 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main amd64 libitm1 amd64 10.2.0-15ubuntu1 [26.3 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main amd64 libatomic1 amd64 10.2.0-15ubuntu1 [9280 B] Get:13 http://ftpmaster.internal/ubuntu hirsute/main amd64 libasan6 amd64 10.2.0-15ubuntu1 [344 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblsan0 amd64 10.2.0-15ubuntu1 [144 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtsan0 amd64 10.2.0-15ubuntu1 [320 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main amd64 libubsan1 amd64 10.2.0-15ubuntu1 [136 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main amd64 libquadmath0 amd64 10.2.0-15ubuntu1 [146 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main amd64 g++-10 amd64 10.2.0-15ubuntu1 [70.1 MB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main amd64 libstdc++-10-dev amd64 10.2.0-15ubuntu1 [1730 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgcc-10-dev amd64 10.2.0-15ubuntu1 [2341 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main amd64 gcc-10 amd64 10.2.0-15ubuntu1 [71.9 MB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main amd64 cpp-10 amd64 10.2.0-15ubuntu1 [63.4 MB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main amd64 libstdc++6 amd64 10.2.0-15ubuntu1 [503 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libctf-nobfd0 amd64 2.35.1-2ubuntu1 [48.2 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libctf0 amd64 2.35.1-2ubuntu1 [47.6 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libbinutils amd64 2.35.1-2ubuntu1 [481 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 binutils-common amd64 2.35.1-2ubuntu1 [212 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 binutils amd64 2.35.1-2ubuntu1 [3376 B] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.35.1-2ubuntu1 [1646 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libapt-pkg6.0 amd64 2.1.11 [848 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libseccomp2 amd64 2.4.3-1ubuntu5 [42.0 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 apt amd64 2.1.11 [1305 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main amd64 libaudit-common all 1:2.8.5-3ubuntu2 [4092 B] Get:34 http://ftpmaster.internal/ubuntu hirsute/main amd64 libaudit1 amd64 1:2.8.5-3ubuntu2 [39.5 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main amd64 libselinux1 amd64 3.1-2build1 [69.4 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsemanage-common all 3.1-1build1 [10.1 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsemanage1 amd64 3.1-1build1 [87.2 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libapparmor1 amd64 3.0.0-0ubuntu2 [36.3 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main amd64 tzdata all 2020d-1ubuntu1 [293 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 217 MB in 16s (13.3 MB/s) (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.17-1ubuntu1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../libcrypt1_1%3a4.4.17-1ubuntu1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:amd64 (1:4.4.17-1ubuntu1) ... (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu16_amd64.deb ... Unpacking base-files (11ubuntu16) over (11ubuntu14) ... Setting up base-files (11ubuntu16) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.254ubuntu1_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.254ubuntu1) over (0.252ubuntu1) ... Setting up libdebconfclient0:amd64 (0.254ubuntu1) ... (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.48_amd64.deb ... Unpacking base-passwd (3.5.48) over (3.5.47) ... Setting up base-passwd (3.5.48) ... Changing home-directory of irc from /var/run/ircd to /run/ircd 1 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-5ubuntu1_amd64.deb ... Unpacking sysvinit-utils (2.96-5ubuntu1) over (2.96-3ubuntu1) ... Setting up sysvinit-utils (2.96-5ubuntu1) ... (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../libcc1-0_10.2.0-15ubuntu1_amd64.deb ... Unpacking libcc1-0:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../gcc-10-base_10.2.0-15ubuntu1_amd64.deb ... Unpacking gcc-10-base:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Setting up gcc-10-base:amd64 (10.2.0-15ubuntu1) ... (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10.2.0-15ubuntu1_amd64.deb ... Unpacking libgcc-s1:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Setting up libgcc-s1:amd64 (10.2.0-15ubuntu1) ... (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../00-libgomp1_10.2.0-15ubuntu1_amd64.deb ... Unpacking libgomp1:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../01-libitm1_10.2.0-15ubuntu1_amd64.deb ... Unpacking libitm1:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../02-libatomic1_10.2.0-15ubuntu1_amd64.deb ... Unpacking libatomic1:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../03-libasan6_10.2.0-15ubuntu1_amd64.deb ... Unpacking libasan6:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../04-liblsan0_10.2.0-15ubuntu1_amd64.deb ... Unpacking liblsan0:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../05-libtsan0_10.2.0-15ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../06-libubsan1_10.2.0-15ubuntu1_amd64.deb ... Unpacking libubsan1:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../07-libquadmath0_10.2.0-15ubuntu1_amd64.deb ... Unpacking libquadmath0:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../08-g++-10_10.2.0-15ubuntu1_amd64.deb ... Unpacking g++-10 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../09-libstdc++-10-dev_10.2.0-15ubuntu1_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../10-libgcc-10-dev_10.2.0-15ubuntu1_amd64.deb ... Unpacking libgcc-10-dev:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../11-gcc-10_10.2.0-15ubuntu1_amd64.deb ... Unpacking gcc-10 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../12-cpp-10_10.2.0-15ubuntu1_amd64.deb ... Unpacking cpp-10 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../13-libstdc++6_10.2.0-15ubuntu1_amd64.deb ... Unpacking libstdc++6:amd64 (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... Setting up libstdc++6:amd64 (10.2.0-15ubuntu1) ... (Reading database ... 12978 files and directories currently installed.) Preparing to unpack .../0-libctf-nobfd0_2.35.1-2ubuntu1_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.35.1-2ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../1-libctf0_2.35.1-2ubuntu1_amd64.deb ... Unpacking libctf0:amd64 (2.35.1-2ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../2-libbinutils_2.35.1-2ubuntu1_amd64.deb ... Unpacking libbinutils:amd64 (2.35.1-2ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../3-binutils-common_2.35.1-2ubuntu1_amd64.deb ... Unpacking binutils-common:amd64 (2.35.1-2ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../4-binutils_2.35.1-2ubuntu1_amd64.deb ... Unpacking binutils (2.35.1-2ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../5-binutils-x86-64-linux-gnu_2.35.1-2ubuntu1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.35.1-2ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../6-libapt-pkg6.0_2.1.11_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.1.11) over (2.1.10) ... Setting up libapt-pkg6.0:amd64 (2.1.11) ... (Reading database ... 12978 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.4.3-1ubuntu5_amd64.deb ... Unpacking libseccomp2:amd64 (2.4.3-1ubuntu5) over (2.4.3-1ubuntu4) ... Setting up libseccomp2:amd64 (2.4.3-1ubuntu5) ... (Reading database ... 12978 files and directories currently installed.) Preparing to unpack .../archives/apt_2.1.11_amd64.deb ... Unpacking apt (2.1.11) over (2.1.10) ... Setting up apt (2.1.11) ... (Reading database ... 12978 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.8.5-3ubuntu2_all.deb ... Unpacking libaudit-common (1:2.8.5-3ubuntu2) over (1:2.8.5-3ubuntu1) ... Setting up libaudit-common (1:2.8.5-3ubuntu2) ... (Reading database ... 12978 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.5-3ubuntu2_amd64.deb ... Unpacking libaudit1:amd64 (1:2.8.5-3ubuntu2) over (1:2.8.5-3ubuntu1) ... Setting up libaudit1:amd64 (1:2.8.5-3ubuntu2) ... (Reading database ... 12978 files and directories currently installed.) Preparing to unpack .../libselinux1_3.1-2build1_amd64.deb ... Unpacking libselinux1:amd64 (3.1-2build1) over (3.1-2) ... Setting up libselinux1:amd64 (3.1-2build1) ... (Reading database ... 12978 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.1-1build1_all.deb ... Unpacking libsemanage-common (3.1-1build1) over (3.1-1) ... Setting up libsemanage-common (3.1-1build1) ... (Reading database ... 12978 files and directories currently installed.) Preparing to unpack .../libsemanage1_3.1-1build1_amd64.deb ... Unpacking libsemanage1:amd64 (3.1-1build1) over (3.1-1) ... Setting up libsemanage1:amd64 (3.1-1build1) ... (Reading database ... 12978 files and directories currently installed.) Preparing to unpack .../libapparmor1_3.0.0-0ubuntu2_amd64.deb ... Unpacking libapparmor1:amd64 (3.0.0-0ubuntu2) over (3.0.0-0ubuntu1) ... Preparing to unpack .../tzdata_2020d-1ubuntu1_all.deb ... Unpacking tzdata (2020d-1ubuntu1) over (2020b-1ubuntu1) ... Setting up libapparmor1:amd64 (3.0.0-0ubuntu2) ... Setting up binutils-common:amd64 (2.35.1-2ubuntu1) ... Setting up libctf-nobfd0:amd64 (2.35.1-2ubuntu1) ... Setting up libgomp1:amd64 (10.2.0-15ubuntu1) ... Setting up libasan6:amd64 (10.2.0-15ubuntu1) ... Setting up tzdata (2020d-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Oct 28 19:34:47 UTC 2020. Universal Time is now: Wed Oct 28 19:34:47 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libquadmath0:amd64 (10.2.0-15ubuntu1) ... Setting up libatomic1:amd64 (10.2.0-15ubuntu1) ... Setting up libubsan1:amd64 (10.2.0-15ubuntu1) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1ubuntu1) ... Setting up libbinutils:amd64 (2.35.1-2ubuntu1) ... Setting up libcc1-0:amd64 (10.2.0-15ubuntu1) ... Setting up liblsan0:amd64 (10.2.0-15ubuntu1) ... Setting up cpp-10 (10.2.0-15ubuntu1) ... Setting up libitm1:amd64 (10.2.0-15ubuntu1) ... Setting up libtsan0:amd64 (10.2.0-15ubuntu1) ... Setting up libctf0:amd64 (2.35.1-2ubuntu1) ... Setting up libgcc-10-dev:amd64 (10.2.0-15ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.35.1-2ubuntu1) ... Setting up libstdc++-10-dev:amd64 (10.2.0-15ubuntu1) ... Setting up binutils (2.35.1-2ubuntu1) ... Setting up gcc-10 (10.2.0-15ubuntu1) ... Setting up g++-10 (10.2.0-15ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20201494 amd64 hirsute-proposed -c chroot:build-PACKAGEBUILD-20201494 --arch=amd64 --dist=hirsute-proposed --nolog -A allelecount_4.2.0-1.dsc Initiating build PACKAGEBUILD-20201494 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-118-generic #119-Ubuntu SMP Tue Sep 8 12:30:01 UTC 2020 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lgw01-amd64-036.buildd +==============================================================================+ | allelecount 4.2.0-1 (amd64) Wed, 28 Oct 2020 19:34:50 +0000 | +==============================================================================+ Package: allelecount Version: 4.2.0-1 Source Version: 4.2.0-1 Distribution: hirsute-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20201494/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- allelecount_4.2.0-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/allelecount-7GiD8g/allelecount-4.2.0' with '<>' I: NOTICE: Log filtering will replace 'build/allelecount-7GiD8g' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-UfTkzi/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-UfTkzi/apt_archive ./ InRelease Get:2 copy:/<>/resolver-UfTkzi/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-UfTkzi/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-UfTkzi/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-UfTkzi/apt_archive ./ Packages [434 B] Fetched 1740 B in 0s (38.0 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-UfTkzi/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (72.0 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12978 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libhts-dev, libbz2-dev, libconst-fast-perl, libdevel-cover-perl, libfile-slurp-perl, libfile-which-perl, libipc-system-simple-perl, libpod-coverage-perl, libtest-fatal-perl (>= 0.013), libtry-tiny-perl, perl Filtered Build-Depends: debhelper-compat (= 13), libhts-dev, libbz2-dev, libconst-fast-perl, libdevel-cover-perl, libfile-slurp-perl, libfile-which-perl, libipc-system-simple-perl, libpod-coverage-perl, libtest-fatal-perl (>= 0.013), libtry-tiny-perl, perl dpkg-deb: building package 'sbuild-build-depends-allelecount-dummy' in '/<>/resolver-UfTkzi/apt_archive/sbuild-build-depends-allelecount-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-allelecount-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-UfTkzi/apt_archive ./ InRelease Get:2 copy:/<>/resolver-UfTkzi/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-UfTkzi/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-UfTkzi/apt_archive ./ Sources [603 B] Get:5 copy:/<>/resolver-UfTkzi/apt_archive ./ Packages [671 B] Fetched 2237 B in 0s (37.4 kB/s) Reading package lists... Reading package lists... Install allelecount build dependencies (apt-based resolver) ----------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libb-debug-perl libbrotli1 libbz2-dev libconst-fast-perl libcroco3 libcurl3-gnutls libdata-optlist-perl libdebhelper-perl libdeflate0 libdevel-cover-perl libdevel-symdump-perl libelf1 libfile-slurp-perl libfile-stripnondeterminism-perl libfile-which-perl libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-parser-perl libhtml-tagset-perl libhts-dev libhts3 libhx509-5-heimdal libicu67 libipc-system-simple-perl libkrb5-26-heimdal libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libparams-util-perl libpipeline1 libpod-coverage-perl libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-override-perl libtest-fatal-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwind0-heimdal libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libbrowser-open-perl libcapture-tiny-perl libclass-xsaccessor-perl libjson-maybexs-perl libmoo-perl libnamespace-clean-perl libppi-html-perl | perltidy libsereal-decoder-perl libsereal-encoder-perl libterm-size-perl libtest-differences-perl libdata-dump-perl liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libwww-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc libtemplate-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libhttp-message-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libb-debug-perl libbrotli1 libbz2-dev libconst-fast-perl libcroco3 libcurl3-gnutls libdata-optlist-perl libdebhelper-perl libdeflate0 libdevel-cover-perl libdevel-symdump-perl libelf1 libfile-slurp-perl libfile-stripnondeterminism-perl libfile-which-perl libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-parser-perl libhtml-tagset-perl libhts-dev libhts3 libhx509-5-heimdal libicu67 libipc-system-simple-perl libkrb5-26-heimdal libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libparams-util-perl libpipeline1 libpod-coverage-perl libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-override-perl libtest-fatal-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwind0-heimdal libxml2 m4 man-db po-debconf sbuild-build-depends-allelecount-dummy zlib1g-dev 0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/resolver-UfTkzi/apt_archive ./ sbuild-build-depends-allelecount-dummy 0.invalid.0 [960 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main amd64 bsdextrautils amd64 2.36-3ubuntu1 [77.5 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main amd64 libuchardet0 amd64 0.0.7-1 [68.0 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main amd64 groff-base amd64 1.22.4-5 [847 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpipeline1 amd64 1.5.3-1 [27.8 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main amd64 man-db amd64 2.9.3-2 [1117 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmagic-mgc amd64 1:5.38-5 [218 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmagic1 amd64 1:5.38-5 [76.0 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main amd64 file amd64 1:5.38-5 [23.3 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main amd64 libelf1 amd64 0.181-1 [44.3 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main 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[895 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main amd64 po-debconf all 1.0.21 [233 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main amd64 debhelper all 13.2.1ubuntu1 [879 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main amd64 libroken18-heimdal amd64 7.7.0+dfsg-2 [41.8 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main amd64 libasn1-8-heimdal amd64 7.7.0+dfsg-2 [181 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libb-debug-perl all 1.26-2 [7668 B] Get:38 http://ftpmaster.internal/ubuntu hirsute/main amd64 libbrotli1 amd64 1.0.9-2build1 [275 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main amd64 libbz2-dev amd64 1.0.8-4ubuntu2 [30.2 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main amd64 libparams-util-perl amd64 1.07-3build5 [19.7 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsub-install-perl all 0.928-1 [10.5 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdata-optlist-perl all 0.110-1 [9956 B] Get:43 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:45 http://ftpmaster.internal/ubuntu hirsute/main amd64 libconst-fast-perl all 0.014-1 [7958 B] Get:46 http://ftpmaster.internal/ubuntu hirsute/main amd64 libheimbase1-heimdal amd64 7.7.0+dfsg-2 [29.7 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main amd64 libhcrypto4-heimdal amd64 7.7.0+dfsg-2 [88.0 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main amd64 libwind0-heimdal amd64 7.7.0+dfsg-2 [47.6 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main amd64 libhx509-5-heimdal amd64 7.7.0+dfsg-2 [107 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main amd64 libkrb5-26-heimdal amd64 7.7.0+dfsg-2 [207 kB] Get:51 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hirsute/universe amd64 libdeflate0 amd64 1.6-1 [54.8 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main amd64 libhtml-tagset-perl all 3.20-4 [12.5 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main amd64 liburi-perl all 1.76-2 [77.5 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main amd64 libhtml-parser-perl amd64 3.73-1 [86.5 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libdevel-cover-perl amd64 1.36-1build1 [177 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdevel-symdump-perl all 2.18-3 [12.7 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libfile-slurp-perl all 9999.32-1 [21.5 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhts3 amd64 1.10.2-5 [333 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblzma-dev amd64 5.2.4-1ubuntu1 [147 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu4 [156 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhts-dev amd64 1.10.2-5 [4703 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main amd64 libipc-system-simple-perl all 1.30-1 [23.2 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libpod-coverage-perl all 0.23-2 [19.3 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtry-tiny-perl all 0.30-1 [20.5 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtest-fatal-perl all 0.016-1 [12.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.2 MB in 3s (8451 kB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 12978 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36-3ubuntu1_amd64.deb ... Unpacking bsdextrautils (2.36-3ubuntu1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.38-5_amd64.deb ... Unpacking libmagic-mgc (1:5.38-5) ... 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Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up liblzma-dev:amd64 (5.2.4-1ubuntu1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu4) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libdevel-symdump-perl (2.18-3) ... Setting up libelf1:amd64 (0.181-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.1) ... Setting up liburi-perl (1.76-2) ... Setting up libheimbase1-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libbz2-dev:amd64 (1.0.8-4ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libtool (2.4.6-14) ... Setting up libasn1-8-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libpod-coverage-perl (0.23-2) ... Setting up m4 (1.4.18-4) ... Setting up libhcrypto4-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libwind0-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libhtml-parser-perl (3.73-1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up automake (1:1.16.2-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libdevel-cover-perl (1.36-1build1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libhx509-5-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libconst-fast-perl (0.014-1) ... Setting up libkrb5-26-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libldap-2.4-2:amd64 (2.4.53+dfsg-1ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.68.0-1ubuntu4) ... Setting up libhts3:amd64 (1.10.2-5) ... Setting up libhts-dev:amd64 (1.10.2-5) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-allelecount-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-118-generic amd64 (x86_64) Toolchain package versions: binutils_2.35.1-2ubuntu1 dpkg-dev_1.20.5ubuntu2 g++-10_10.2.0-15ubuntu1 gcc-10_10.2.0-15ubuntu1 libc6-dev_2.32-0ubuntu3 libstdc++-10-dev_10.2.0-15ubuntu1 libstdc++6_10.2.0-15ubuntu1 linux-libc-dev_5.8.0-25.26 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.0-6ubuntu2 binutils_2.35.1-2ubuntu1 binutils-common_2.35.1-2ubuntu1 binutils-x86-64-linux-gnu_2.35.1-2ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-3ubuntu1 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.0-15ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1ubuntu1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.5ubuntu2 dpkg-dev_1.20.5ubuntu2 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.2-1 file_1:5.38-5 findutils_4.7.0-1ubuntu2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.0-15ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.0-15ubuntu1 gcc-10-base_10.2.0-15ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 init_1.58 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_3.0.0-0ubuntu2 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan6_10.2.0-15ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.3-7.1 libatomic1_10.2.0-15ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3ubuntu2 libaudit1_1:2.8.5-3ubuntu2 libb-debug-perl_1.26-2 libbinutils_2.35.1-2ubuntu1 libblkid1_2.36-3ubuntu1 libbrotli1_1.0.9-2build1 libbz2-1.0_1.0.8-4ubuntu2 libbz2-dev_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu3 libc-dev-bin_2.32-0ubuntu3 libc6_2.32-0ubuntu3 libc6-dev_2.32-0ubuntu3 libcap-ng0_0.7.9-2.2 libcap2_1:2.43-1 libcc1-0_10.2.0-15ubuntu1 libcom-err2_1.45.6-1ubuntu1 libconst-fast-perl_0.014-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.3-1ubuntu6 libctf-nobfd0_2.35.1-2ubuntu1 libctf0_2.35.1-2ubuntu1 libcurl3-gnutls_7.68.0-1ubuntu4 libdata-optlist-perl_0.110-1 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.254ubuntu1 libdebhelper-perl_13.2.1ubuntu1 libdeflate0_1.6-1 libdevel-cover-perl_1.36-1build1 libdevel-symdump-perl_2.18-3 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdpkg-perl_1.20.5ubuntu2 libelf1_0.181-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.2-1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-slurp-perl_9999.32-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.0-15ubuntu1 libgcc-s1_10.2.0-15ubuntu1 libgcrypt20_1.8.5-5ubuntu2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.1-2 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.0-15ubuntu1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libgssapi3-heimdal_7.7.0+dfsg-2 libhcrypto4-heimdal_7.7.0+dfsg-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.6-2 libhtml-parser-perl_3.73-1 libhtml-tagset-perl_3.20-4 libhts-dev_1.10.2-5 libhts3_1.10.2-5 libhx509-5-heimdal_7.7.0+dfsg-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libip4tc2_1.8.5-3ubuntu1 libipc-system-simple-perl_1.30-1 libisl22_0.22.1-1 libitm1_10.2.0-15ubuntu1 libjson-c5_0.15-1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.17-10 libkrb5support0_1.17-10 libldap-2.4-2_2.4.53+dfsg-1ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10.2.0-15ubuntu1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1ubuntu1 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3ubuntu1 libmpc3_1.2.0~rc1-1 libmpfr6_4.1.0-3 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libnpth0_1.6-2 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.21-2build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libparams-util-perl_1.07-3build5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libpod-coverage-perl_0.23-2 libprocps8_2:3.3.16-5ubuntu2 libpsl5_0.21.0-1.1ubuntu1 libquadmath0_10.2.0-15ubuntu1 libreadline8_8.0-4 libroken18-heimdal_7.7.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libsasl2-2_2.1.27+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27+dfsg-2ubuntu1 libseccomp2_2.4.3-1ubuntu5 libselinux1_3.1-2build1 libsemanage-common_3.1-1build1 libsemanage1_3.1-1build1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.36-3ubuntu1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1ubuntu1 libssh-4_0.9.4-1ubuntu3 libssl1.1_1.1.1f-1ubuntu4 libstdc++-10-dev_10.2.0-15ubuntu1 libstdc++6_10.2.0-15ubuntu1 libsub-exporter-perl_0.987-1 libsub-exporter-progressive-perl_0.001013-1 libsub-install-perl_0.928-1 libsub-override-perl_0.09-2 libsystemd0_246.6-1ubuntu1 libtasn1-6_4.16.0-2 libtest-fatal-perl_0.016-1 libtinfo6_6.2-1 libtirpc-common_1.2.6-1build1 libtirpc-dev_1.2.6-1build1 libtirpc3_1.2.6-1build1 libtool_2.4.6-14 libtry-tiny-perl_0.30-1 libtsan0_10.2.0-15ubuntu1 libubsan1_10.2.0-15ubuntu1 libuchardet0_0.0.7-1 libudev1_246.6-1ubuntu1 libunistring2_0.9.10-4 liburi-perl_1.76-2 libuuid1_2.36-3ubuntu1 libwind0-heimdal_7.7.0+dfsg-2 libxml2_2.9.10+dfsg-6.1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-25.26 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3ubuntu1 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 readline-common_8.0-4 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-allelecount-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-1ubuntu1 systemd-sysv_246.6-1ubuntu1 systemd-timesyncd_246.6-1ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.30+dfsg-7 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36-3ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Oct 3 19:07:00 2020 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./allelecount_4.2.0-1.dsc dpkg-source: info: extracting allelecount in /<> dpkg-source: info: unpacking allelecount_4.2.0.orig.tar.gz dpkg-source: info: unpacking allelecount_4.2.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20201494 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20201494 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20201494 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package allelecount dpkg-buildpackage: info: source version 4.2.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean --sourcedirectory=c cd c && make -j4 clean make[2]: Entering directory '/<>/c' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno make[2]: Leaving directory '/<>/c' dh_auto_clean --sourcedirectory=perl make[1]: Leaving directory '/<>' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure --sourcedirectory=c dh_auto_configure --sourcedirectory=perl cd perl && perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for alleleCount Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build --sourcedirectory=c cd c && make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/c' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno mkdir -p ./bin mkdir -p ./htslib_tmp #Do some magic to ensure we compile ALLELECOUNT with the static libhts.a rather than libhts.so ln -fs /libhts.a ./htslib_tmp/libhts.a gcc -O3 -DALLELECOUNTER_VERSION='"4.2.0"' -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -I/usr/local//include -Isrc/ -I/ -rdynamic -c src/bam_access.c -o src/bam_access.o src/bam_access.c: In function ‘pileupCounts’: src/bam_access.c:132:56: warning: ‘pre_b’ may be used uninitialized in this function [-Wmaybe-uninitialized] 132 | if(!(p->is_del) && qual >= min_base_qual && (absent || pre_b != c)){ | ~~~~~~~~^~~~~~~~~~~~~~ gcc -O3 -DALLELECOUNTER_VERSION='"4.2.0"' -I/usr/local//include -Isrc/ -I/ -rdynamic -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -o ./bin/alleleCounter ./src/bam_access.o -L./htslib_tmp -L/usr/local//lib -lhts -lpthread -lz -lbz2 -llzma -lm -ldl ./src/alleleCounter.c -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now gcc -O3 -DALLELECOUNTER_VERSION='"4.2.0"' -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -I/usr/local//include -Isrc/ -I/ -rdynamic ./src/bam_access.o -L./htslib_tmp -lhts -lpthread -lz -lbz2 -llzma -lm -ldl -L/usr/local//lib -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now tests/bam_access_tests.c -o tests/bam_access_tests tests/bam_access_tests.c: In function ‘test_bam_access_get_position_base_counts’: tests/bam_access_tests.c:45:6: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] 45 | int res = bam_access_get_position_base_counts(chr,pos,stats,0,NULL); | ^~~ sh ./tests/runtests.sh Running unit tests: ---- RUNNING: ./tests/bam_access_tests Performing pileup of 11250 reads at 1 198661939 ALL TESTS PASSED Tests run: 1 tests/bam_access_tests PASS remove tmp hts location rm -rf ./htslib_tmp Binaries have been compiled. make[2]: Leaving directory '/<>/c' dh_auto_build --sourcedirectory=perl cd perl && make -j4 make[2]: Entering directory '/<>/perl' cp lib/Sanger/CGP/AlleleCount/Genotype.pm blib/lib/Sanger/CGP/AlleleCount/Genotype.pm cp lib/Sanger/CGP/AlleleCount.pm blib/lib/Sanger/CGP/AlleleCount.pm cp bin/alleleCounter.pl blib/script/alleleCounter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/alleleCounter.pl Manifying 1 pod document Manifying 1 pod document make[2]: Leaving directory '/<>/perl' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test --sourcedirectory=c cd c && make -j4 test make[2]: Entering directory '/<>/c' sh ./tests/runtests.sh Running unit tests: ---- RUNNING: ./tests/bam_access_tests Performing pileup of 11250 reads at 1 198661939 ALL TESTS PASSED Tests run: 1 tests/bam_access_tests PASS make[2]: Leaving directory '/<>/c' dh_auto_test --sourcedirectory=perl cd perl && make -j4 test TEST_VERBOSE=1 make[2]: Entering directory '/<>/perl' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/1_pm_compile.t .. ok 1 - use Sanger::CGP::AlleleCount; ok 2 - use Sanger::CGP::AlleleCount::Genotype; ok 3 - Check version inheritance exists (Sanger::CGP::AlleleCount) ok 4 - Check version inheritance exists (Sanger::CGP::AlleleCount::Genotype) ok 5 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' 1..5 ok t/2_pl_compile.t .. ok 1 - Compilation check: /<>/perl/t/../bin/alleleCounter.pl 1..1 ok t/genotype.t ...... ok 1 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' ok 2 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' ok 3 - Check execution of loci profile (BAM) ok 4 - Expected result for defaults (BAM) ok 5 - Check execution of loci profile (BAM, pbq=20) ok 6 - Expected result for defaults (BAM, pbq=20) ok 7 - Check execution of loci profile (BAM, mapq=1) ok 8 - Expected result for defaults (BAM, mapq=1) ok 9 - Check execution of snp6 loci profile (BAM) ok 10 - Expected result for defaults (BAM) ok 11 - Check execution of snp6 loci profile (BAM, pbq=20) ok 12 - Expected result for defaults (BAM, pbq=20) ok 13 - Check execution of snp6 loci profile (BAM, mapq=1) ok 14 - Expected result for defaults (BAM, mapq>0) ok 15 - Check execution of loci profile (CRAM) ok 16 - Expected result for defaults (CRAM) ok 17 - Check execution of loci profile (CRAM, pbq=20) ok 18 - Expected result for defaults (CRAM, pbq=20) ok 19 - Check execution of loci profile (CRAM, mapq=1) ok 20 - Expected result for defaults (CRAM, mapq=1) ok 21 - Check execution of snp6 loci profile (CRAM) ok 22 - Expected result for defaults (CRAM) ok 23 - Check execution of snp6 loci profile (CRAM, pbq=20) ok 24 - Expected result for defaults (CRAM, pbq=20) ok 25 - Check execution of snp6 loci profile (CRAM, mapq=1) ok 26 - Expected result for defaults (CRAM, mapq=1) 1..26 ok All tests successful. Files=3, Tests=32, 1 wallclock secs ( 0.05 usr 0.02 sys + 0.70 cusr 0.21 csys = 0.98 CPU) Result: PASS make[2]: Leaving directory '/<>/perl' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install --sourcedirectory=c dh_auto_install --sourcedirectory=perl cd perl && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[2]: Entering directory '/<>/perl' Manifying 1 pod document Manifying 1 pod document Installing /<>/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount.pm Installing /<>/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount/Genotype.pm Installing /<>/debian/tmp/usr/share/man/man1/alleleCounter.pl.1p Installing /<>/debian/tmp/usr/share/man/man3/Sanger::CGP::AlleleCount::Genotype.3pm Installing /<>/debian/tmp/usr/bin/alleleCounter.pl make[2]: Leaving directory '/<>/perl' make[1]: Leaving directory '/<>' dh_install dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing liballelecount-perl (in debian/liballelecount-perl); do_strip: , oemstrip: pkgstriptranslations: processing allelecount (in debian/allelecount); do_strip: , oemstrip: pkgstriptranslations: processing allelecount-dbgsym (in debian/.debhelper/allelecount/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/liballelecount-perl/DEBIAN/control, package liballelecount-perl, directory debian/liballelecount-perl INFO: pkgstripfiles: waiting for lock (liballelecount-perl) ... pkgstripfiles: processing control file: debian/.debhelper/allelecount/dbgsym-root/DEBIAN/control, package allelecount-dbgsym, directory debian/.debhelper/allelecount/dbgsym-root dpkg-deb: building package 'allelecount-dbgsym' in 'debian/.debhelper/scratch-space/build-allelecount/allelecount-dbgsym_4.2.0-1_amd64.deb'. Renaming allelecount-dbgsym_4.2.0-1_amd64.deb to allelecount-dbgsym_4.2.0-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (liballelecount-perl) ... INFO: pkgstripfiles: waiting for lock (liballelecount-perl) ... INFO: pkgstripfiles: waiting for lock (liballelecount-perl) ... INFO: pkgstripfiles: waiting for lock (liballelecount-perl) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/allelecount/DEBIAN/control, package allelecount, directory debian/allelecount pkgstripfiles: Running PNG optimization (using 4 cpus) for package allelecount ... pkgstripfiles: No PNG files. dpkg-deb: building package 'allelecount' in '../allelecount_4.2.0-1_amd64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package liballelecount-perl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'liballelecount-perl' in '../liballelecount-perl_4.2.0-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../allelecount_4.2.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-10-28T19:35:43Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ allelecount_4.2.0-1_amd64.changes: ---------------------------------- Format: 1.8 Date: Sat, 03 Oct 2020 20:36:32 +0530 Source: allelecount Binary: allelecount liballelecount-perl Architecture: amd64 all Version: 4.2.0-1 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: allelecount - NGS copy number algorithms liballelecount-perl - Perl interface to NGS copy number algorithms Changes: allelecount (4.2.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) * Add autopkgtests Checksums-Sha1: 4a05f2ea966617f5f28f6a5e74d967b28ec3ee40 35352 allelecount-dbgsym_4.2.0-1_amd64.ddeb af38ed6065f9721b5a8431a9ddfb2473a410ab08 7561 allelecount_4.2.0-1_amd64.buildinfo fbd9e5d6203638d32c60a259f25e6e4b66a0a448 27904 allelecount_4.2.0-1_amd64.deb 2382b04382c1b0e77f46491ec78555ffb49f5a76 19956 liballelecount-perl_4.2.0-1_all.deb Checksums-Sha256: fff035d85d3aeb5d264ebcbc5f4c1fb19bb6e51d2d3217ec2b2e641ae9bd6e90 35352 allelecount-dbgsym_4.2.0-1_amd64.ddeb eea9c587632a166a4a22a874a3ba6042d78f8b7aed4941c6110364efb11c651e 7561 allelecount_4.2.0-1_amd64.buildinfo 337ce488b5fe62c0fdde9cd3d1f6ab201be130738030dae4389828ccf600922c 27904 allelecount_4.2.0-1_amd64.deb af3d4d27dde631ba1de1f934fb3f398de5d0182f3af01beb69bd4b7fafe37e47 19956 liballelecount-perl_4.2.0-1_all.deb Files: a5d385c5f1f84b34a04e3af194605283 35352 debug optional 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allelecount_4.2.0-1_amd64.deb 2382b04382c1b0e77f46491ec78555ffb49f5a76 19956 liballelecount-perl_4.2.0-1_all.deb Checksums-Sha256: fff035d85d3aeb5d264ebcbc5f4c1fb19bb6e51d2d3217ec2b2e641ae9bd6e90 35352 allelecount-dbgsym_4.2.0-1_amd64.ddeb 337ce488b5fe62c0fdde9cd3d1f6ab201be130738030dae4389828ccf600922c 27904 allelecount_4.2.0-1_amd64.deb af3d4d27dde631ba1de1f934fb3f398de5d0182f3af01beb69bd4b7fafe37e47 19956 liballelecount-perl_4.2.0-1_all.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Wed, 28 Oct 2020 19:35:43 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-4ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.0-6ubuntu2), binutils (= 2.35.1-2ubuntu1), binutils-common (= 2.35.1-2ubuntu1), binutils-x86-64-linux-gnu (= 2.35.1-2ubuntu1), bsdextrautils (= 2.36-3ubuntu1), bsdutils (= 1:2.36-3ubuntu1), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-3ubuntu1), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.0-15ubuntu1), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu2), dpkg-dev (= 1.20.5ubuntu2), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1ubuntu2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.0-15ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.0-15ubuntu1), gcc-10-base (= 10.2.0-15ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-15ubuntu1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 10.2.0-15ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu2), libaudit1 (= 1:2.8.5-3ubuntu2), libb-debug-perl (= 1.26-2), libbinutils (= 2.35.1-2ubuntu1), libblkid1 (= 2.36-3ubuntu1), libbrotli1 (= 1.0.9-2build1), libbz2-1.0 (= 1.0.8-4ubuntu2), libbz2-dev (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu3), libc-dev-bin (= 2.32-0ubuntu3), libc6 (= 2.32-0ubuntu3), libc6-dev (= 2.32-0ubuntu3), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-15ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libconst-fast-perl (= 0.014-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.35.1-2ubuntu1), libctf0 (= 2.35.1-2ubuntu1), libcurl3-gnutls (= 7.68.0-1ubuntu4), libdata-optlist-perl (= 0.110-1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.254ubuntu1), libdebhelper-perl (= 13.2.1ubuntu1), libdeflate0 (= 1.6-1), libdevel-cover-perl (= 1.36-1build1), libdevel-symdump-perl (= 2.18-3), libdpkg-perl (= 1.20.5ubuntu2), libelf1 (= 0.181-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-slurp-perl (= 9999.32-1), libfile-stripnondeterminism-perl (= 1.9.0-1), libfile-which-perl (= 1.23-1), libgcc-10-dev (= 10.2.0-15ubuntu1), libgcc-s1 (= 10.2.0-15ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.66.1-2), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgnutls30 (= 3.6.15-4ubuntu2), libgomp1 (= 10.2.0-15ubuntu1), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.17-10), libgssapi3-heimdal (= 7.7.0+dfsg-2), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.6-2), libhtml-parser-perl (= 3.73-1), libhtml-tagset-perl (= 3.20-4), libhts-dev (= 1.10.2-5), libhts3 (= 1.10.2-5), libhx509-5-heimdal (= 7.7.0+dfsg-2), libicu67 (= 67.1-4), libidn2-0 (= 2.3.0-1), libipc-system-simple-perl (= 1.30-1), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-15ubuntu1), libk5crypto3 (= 1.17-10), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.17-10), libkrb5support0 (= 1.17-10), libldap-2.4-2 (= 2.4.53+dfsg-1ubuntu1), liblsan0 (= 10.2.0-15ubuntu1), liblz4-1 (= 1.9.2-2), liblzma-dev (= 5.2.4-1ubuntu1), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3ubuntu1), libmpc3 (= 1.2.0~rc1-1), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.6-2), libnghttp2-14 (= 1.41.0-3), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libnss-nis (= 3.1-0ubuntu4), libnss-nisplus (= 1.3-0ubuntu4), libp11-kit0 (= 0.23.21-2build1), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libparams-util-perl (= 1.07-3build5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.3-1), libpod-coverage-perl (= 0.23-2), libpsl5 (= 0.21.0-1.1ubuntu1), libquadmath0 (= 10.2.0-15ubuntu1), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libseccomp2 (= 2.4.3-1ubuntu5), libselinux1 (= 3.1-2build1), libsigsegv2 (= 2.12-2build1), libsmartcols1 (= 2.36-3ubuntu1), libsqlite3-0 (= 3.33.0-1), libssh-4 (= 0.9.4-1ubuntu3), libssl1.1 (= 1.1.1f-1ubuntu4), libstdc++-10-dev (= 10.2.0-15ubuntu1), libstdc++6 (= 10.2.0-15ubuntu1), libsub-exporter-perl (= 0.987-1), libsub-exporter-progressive-perl (= 0.001013-1), libsub-install-perl (= 0.928-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-1ubuntu1), libtasn1-6 (= 4.16.0-2), libtest-fatal-perl (= 0.016-1), libtinfo6 (= 6.2-1), libtirpc-common (= 1.2.6-1build1), libtirpc-dev (= 1.2.6-1build1), libtirpc3 (= 1.2.6-1build1), libtool (= 2.4.6-14), libtry-tiny-perl (= 0.30-1), libtsan0 (= 10.2.0-15ubuntu1), libubsan1 (= 10.2.0-15ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-1ubuntu1), libunistring2 (= 0.9.10-4), liburi-perl (= 1.76-2), libuuid1 (= 2.36-3ubuntu1), libwind0-heimdal (= 7.7.0+dfsg-2), libxml2 (= 2.9.10+dfsg-6.1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-25.26), login (= 1:4.8.1-1ubuntu6), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.30+dfsg-7), util-linux (= 2.36-3ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1601737592" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ allelecount_4.2.0-1_amd64.deb ----------------------------- new Debian package, version 2.0. size 27904 bytes: control archive=908 bytes. 747 bytes, 17 lines control 352 bytes, 5 lines md5sums Package: allelecount Version: 4.2.0-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 89 Depends: libc6 (>= 2.7), libhts3 (>= 1.10) Section: science Priority: optional Homepage: https://github.com/cancerit/alleleCount Description: NGS copy number algorithms Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings). . The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg. drwxr-xr-x root/root 0 2020-10-03 15:06 ./ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/bin/ -rwxr-xr-x root/root 39608 2020-10-03 15:06 ./usr/bin/alleleCounter drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/doc/allelecount/ -rw-r--r-- root/root 442 2020-10-03 15:06 ./usr/share/doc/allelecount/changelog.Debian.gz -rw-r--r-- root/root 35101 2020-10-03 15:06 ./usr/share/doc/allelecount/copyright drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/lintian/ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 120 2020-10-03 15:05 ./usr/share/lintian/overrides/allelecount drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/man/ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/man/man1/ -rw-r--r-- root/root 1132 2020-10-03 15:06 ./usr/share/man/man1/alleleCounter.1.gz liballelecount-perl_4.2.0-1_all.deb ----------------------------------- new Debian package, version 2.0. size 19956 bytes: control archive=1136 bytes. 1051 bytes, 21 lines control 639 bytes, 8 lines md5sums Package: liballelecount-perl Source: allelecount Version: 4.2.0-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 69 Depends: perl:any, libconst-fast-perl, libdevel-cover-perl, libfile-slurp-perl, libfile-which-perl, libipc-system-simple-perl, libpod-coverage-perl, libtest-fatal-perl (>= 0.013), libtry-tiny-perl Section: perl Priority: optional Homepage: https://github.com/cancerit/alleleCount Description: Perl interface to NGS copy number algorithms Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings). . The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg. . This package provided the Perl interface to alleleCounter providing Sanger::CGP::AlleleCount::Genotype. drwxr-xr-x root/root 0 2020-10-03 15:06 ./ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/bin/ -rwxr-xr-x root/root 3741 2020-10-03 15:06 ./usr/bin/alleleCounter.pl drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/doc/liballelecount-perl/ -rw-r--r-- root/root 442 2020-10-03 15:06 ./usr/share/doc/liballelecount-perl/changelog.Debian.gz -rw-r--r-- root/root 35101 2020-10-03 15:06 ./usr/share/doc/liballelecount-perl/copyright drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/lintian/ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 128 2020-10-03 15:05 ./usr/share/lintian/overrides/liballelecount-perl drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/man/ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/man/man1/ -rw-r--r-- root/root 1609 2020-10-03 15:06 ./usr/share/man/man1/alleleCounter.pl.1p.gz drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/man/man3/ -rw-r--r-- root/root 1721 2020-10-03 15:06 ./usr/share/man/man3/Sanger::CGP::AlleleCount::Genotype.3pm.gz drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/perl5/ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/perl5/Sanger/ drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/perl5/Sanger/CGP/ -rw-r--r-- root/root 972 2020-09-30 22:14 ./usr/share/perl5/Sanger/CGP/AlleleCount.pm drwxr-xr-x root/root 0 2020-10-03 15:06 ./usr/share/perl5/Sanger/CGP/AlleleCount/ -rw-r--r-- root/root 6767 2020-09-30 22:14 ./usr/share/perl5/Sanger/CGP/AlleleCount/Genotype.pm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 22 Distribution: hirsute-proposed Host Architecture: amd64 Install-Time: 29 Job: allelecount_4.2.0-1.dsc Machine Architecture: amd64 Package: allelecount Package-Time: 53 Source-Version: 4.2.0-1 Space: n/a Status: successful Version: 4.2.0-1 -------------------------------------------------------------------------------- Finished at 2020-10-28T19:35:43Z Build needed 00:00:53, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20201494 Scanning for processes to kill in build PACKAGEBUILD-20201494