https://launchpad.net/ubuntu/+source/altree/1.3.2-2build1/+build/27628990 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos03-arm64-020 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 aarch64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 10 Jan 19:00:02 ntpdate[1862]: adjust time server 10.211.37.1 offset -0.001989 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27628990 --image-type chroot /home/buildd/filecache-default/59612f0fc5bae33f6226b6e60c2e882b82c04bd0 Creating target for build PACKAGEBUILD-27628990 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27628990 Starting target for build PACKAGEBUILD-27628990 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27628990 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27628990 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27628990 Updating target for build PACKAGEBUILD-27628990 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [256 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main armhf Packages [1335 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe armhf Packages [14.2 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6019 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [65.3 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [30.1 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [308 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [158 kB] Fetched 23.2 MB in 3s (6845 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.36 libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.38 libunistring5 perl-modules-5.38 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-arm-linux-gnueabihf binutils-common bsdextrautils bsdutils coreutils cpp cpp-13 debconf debconf-i18n debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep init init-system-helpers krb5-locales libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgssapi-krb5-2 libidn2-0 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblzma5 libmd0 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps readline-common sed systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring usrmerge util-linux uuid-runtime xz-utils zlib1g 142 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 101 MB of archives. After this operation, 41.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main armhf libnsl-dev armhf 1.3.0-3 [65.8 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcrypt-dev armhf 1:4.4.36-4 [136 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main armhf libc6-dev armhf 2.38-3ubuntu1 [1347 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main armhf libc-dev-bin armhf 2.38-3ubuntu1 [18.9 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-common all 1.3.4+ds-1build1 [8566 B] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-dev armhf 1.3.4+ds-1build1 [207 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main armhf libgssapi-krb5-2 armhf 1.20.1-5build1 [118 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main armhf libkrb5-3 armhf 1.20.1-5build1 [320 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main armhf libk5crypto3 armhf 1.20.1-5build1 [78.6 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main armhf libkrb5support0 armhf 1.20.1-5build1 [31.3 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main armhf libssl3 armhf 3.0.10-1ubuntu3 [1560 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc3 armhf 1.3.4+ds-1build1 [81.0 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libnsl2 armhf 1.3.0-3 [35.9 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcrypt1 armhf 1:4.4.36-4 [104 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main armhf linux-libc-dev armhf 6.6.0-14.14 [1539 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main armhf libcc1-0 armhf 13.2.0-9ubuntu1 [43.8 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf0 armhf 2.41.50.20231227-1ubuntu1 [85.1 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf-nobfd0 armhf 2.41.50.20231227-1ubuntu1 [88.4 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.41.50.20231227-1ubuntu1 [4210 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbinutils armhf 2.41.50.20231227-1ubuntu1 [487 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-common armhf 2.41.50.20231227-1ubuntu1 [230 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils armhf 2.41.50.20231227-1ubuntu1 [3222 B] Get:23 http://ftpmaster.internal/ubuntu noble/main armhf gcc-13-base armhf 13.2.0-9ubuntu1 [45.2 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main armhf libgcc-s1 armhf 13.2.0-9ubuntu1 [41.4 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main armhf libgomp1 armhf 13.2.0-9ubuntu1 [120 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main armhf libatomic1 armhf 13.2.0-9ubuntu1 [7794 B] Get:27 http://ftpmaster.internal/ubuntu noble/main armhf libasan8 armhf 13.2.0-9ubuntu1 [2749 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main armhf libubsan1 armhf 13.2.0-9ubuntu1 [1072 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main armhf g++-13 armhf 13.2.0-9ubuntu1 [9442 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main armhf libstdc++-13-dev armhf 13.2.0-9ubuntu1 [2398 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main armhf libgcc-13-dev armhf 13.2.0-9ubuntu1 [901 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main armhf gcc-13 armhf 13.2.0-9ubuntu1 [16.5 MB] Get:33 http://ftpmaster.internal/ubuntu noble/main armhf cpp-13 armhf 13.2.0-9ubuntu1 [8249 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main armhf libstdc++6 armhf 13.2.0-9ubuntu1 [698 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main armhf zlib1g armhf 1:1.3.dfsg-3ubuntu1 [50.6 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsframe1 armhf 2.41.50.20231227-1ubuntu1 [13.5 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main armhf libzstd1 armhf 1.5.5+dfsg2-2 [265 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main armhf libc6 armhf 2.38-3ubuntu1 [2818 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main armhf base-files armhf 13ubuntu6 [84.0 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main armhf debianutils armhf 5.16 [93.1 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main armhf bash armhf 5.2.21-2ubuntu1 [673 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main armhf bsdutils armhf 1:2.39.2-6ubuntu1 [99.5 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main armhf coreutils armhf 9.4-2ubuntu2 [1489 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main armhf diffutils armhf 1:3.10-1 [167 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main armhf liblzma5 armhf 5.4.5-0.3 [120 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main armhf libacl1 armhf 2.3.1-4ubuntu1 [16.2 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main armhf libapparmor1 armhf 4.0.0~alpha2-0ubuntu7 [43.8 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main armhf libaudit-common all 1:3.1.2-1 [5512 B] Get:49 http://ftpmaster.internal/ubuntu noble/main armhf libcap-ng0 armhf 0.8.4-1 [14.5 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main armhf libaudit1 armhf 1:3.1.2-1 [44.2 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main armhf libblkid1 armhf 2.39.2-6ubuntu1 [159 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main armhf libkmod2 armhf 30+20230601-2ubuntu1 [43.9 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-8-0 armhf 10.42-4ubuntu1 [198 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main armhf libselinux1 armhf 3.5-1build2 [69.6 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main armhf libmount1 armhf 2.39.2-6ubuntu1 [171 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-iconv-perl armhf 1.7-8build1 [12.6 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-charwidth-perl armhf 0.04-11build1 [8894 B] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-modules-5.38 all 5.38.2-2 [3110 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libperl5.38 armhf 5.38.2-2 [4105 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl armhf 5.38.2-2 [231 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-base armhf 5.38.2-2 [1670 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblocale-gettext-perl armhf 1.07-6build1 [14.8 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main armhf perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main armhf libperl5.36 armhf 5.36.0-10ubuntu1 [4019 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main armhf libdb5.3 armhf 5.3.28+dfsg2-4 [652 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main armhf libgdbm6 armhf 1.23-5 [29.8 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main armhf libgdbm-compat4 armhf 1.23-5 [5970 B] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main armhf debconf-i18n all 1.5.83 [238 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main armhf debconf all 1.5.83 [147 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main armhf libpam0g armhf 1.5.2-9.1ubuntu1 [59.9 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libseccomp2 armhf 2.5.4-2ubuntu1 [48.9 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-sysv armhf 255.2-3ubuntu1 [12.5 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-dev all 255.2-3ubuntu1 [107 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd armhf 255.2-3ubuntu1 [3985 kB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd-shared armhf 255.2-3ubuntu1 [2356 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main armhf libargon2-1 armhf 0~20190702+dfsg-4 [22.3 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main armhf libuuid1 armhf 2.39.2-6ubuntu1 [33.4 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main armhf libcryptsetup12 armhf 2:2.6.1-6ubuntu1 [216 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main armhf libfdisk1 armhf 2.39.2-6ubuntu1 [195 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main armhf mount armhf 2.39.2-6ubuntu1 [132 kB] Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd0 armhf 255.2-3ubuntu1 [454 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudev1 armhf 255.2-3ubuntu1 [176 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main armhf libxxhash0 armhf 0.8.2-2 [31.3 kB] Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapt-pkg6.0 armhf 2.7.8 [983 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main armhf tar armhf 1.35+dfsg-2 [259 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main armhf dpkg armhf 1.22.2ubuntu2 [1253 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main armhf grep armhf 3.11-4 [166 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main armhf login armhf 1:4.13+dfsg1-3ubuntu1 [200 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main armhf ncurses-bin armhf 6.4+20231209-1 [177 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main armhf sed armhf 4.9-2 [198 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main armhf util-linux armhf 2.39.2-6ubuntu1 [1211 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main armhf libdebconfclient0 armhf 0.271ubuntu1 [10.8 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main armhf base-passwd armhf 3.6.3 [51.0 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main armhf init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main armhf libc-bin armhf 2.38-3ubuntu1 [532 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main armhf ncurses-base all 6.4+20231209-1 [25.2 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main armhf sysvinit-utils armhf 3.08-3ubuntu1 [33.4 kB] Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt armhf 2.7.8 [1362 kB] Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt-utils armhf 2.7.8 [211 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main armhf ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main armhf libffi8 armhf 3.4.4-2 [20.8 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main armhf libp11-kit0 armhf 0.25.3-2ubuntu2 [261 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main armhf libunistring5 armhf 1.1-2 [512 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main armhf libidn2-0 armhf 2.3.4-1build1 [94.2 kB] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgnutls30 armhf 3.8.1-4ubuntu7 [942 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main armhf libpam-modules-bin armhf 1.5.2-9.1ubuntu1 [43.6 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main armhf libpam-modules armhf 1.5.2-9.1ubuntu1 [265 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main armhf init armhf 1.66ubuntu1 [6186 B] Get:109 http://ftpmaster.internal/ubuntu noble/main armhf libsmartcols1 armhf 2.39.2-6ubuntu1 [116 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main armhf uuid-runtime armhf 2.39.2-6ubuntu1 [40.7 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main armhf libattr1 armhf 1:2.5.1-5 [11.5 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error-l10n all 1.47-3build1 [8024 B] Get:113 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error0 armhf 1.47-3build1 [61.6 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main armhf libmd0 armhf 1.1.0-2 [23.1 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main armhf libpam-runtime all 1.5.2-9.1ubuntu1 [41.5 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main armhf libsemanage-common all 3.5-1build1 [9982 B] Get:117 http://ftpmaster.internal/ubuntu noble/main armhf libsepol2 armhf 3.5-2 [262 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main armhf libsemanage2 armhf 3.5-1build1 [84.1 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main armhf libncursesw6 armhf 6.4+20231209-1 [118 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main armhf libtinfo6 armhf 6.4+20231209-1 [90.4 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main armhf passwd armhf 1:4.13+dfsg1-3ubuntu1 [817 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main armhf libproc2-0 armhf 2:4.0.4-2ubuntu1 [49.6 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main armhf mawk armhf 1.3.4.20231126-1 [115 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main armhf procps armhf 2:4.0.4-2ubuntu1 [699 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main armhf usrmerge all 38ubuntu1 [58.8 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main armhf krb5-locales all 1.20.1-5build1 [13.7 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main armhf readline-common all 8.2-3 [56.2 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main armhf libreadline8 armhf 8.2-3 [129 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main armhf libsqlite3-0 armhf 3.44.2-1 [593 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main armhf openssl armhf 3.0.10-1ubuntu3 [1158 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main armhf tzdata all 2023d-1ubuntu2 [321 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main armhf bash-completion all 1:2.11-8 [180 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main armhf bsdextrautils armhf 2.39.2-6ubuntu1 [77.7 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main armhf libpng16-16 armhf 1.6.40-3 [176 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main armhf xz-utils armhf 5.4.5-0.3 [274 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main armhf g++ armhf 4:13.2.0-2ubuntu1 [1108 B] Get:137 http://ftpmaster.internal/ubuntu noble/main armhf gcc armhf 4:13.2.0-2ubuntu1 [5196 B] Get:138 http://ftpmaster.internal/ubuntu noble/main armhf cpp armhf 4:13.2.0-2ubuntu1 [29.0 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main armhf dpkg-dev all 1.22.2ubuntu2 [1168 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main armhf libdpkg-perl all 1.22.2ubuntu2 [321 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main armhf lto-disabled-list all 45 [12.4 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main armhf libfakeroot armhf 1.32.2-1 [28.0 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main armhf fakeroot armhf 1.32.2-1 [68.8 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main armhf optipng armhf 0.7.7-3 [82.2 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main armhf pinentry-curses armhf 1.2.1-3ubuntu1 [36.4 kB] Preconfiguring packages ... 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Setting up libtirpc-dev:armhf (1.3.4+ds-1build1) ... Setting up gcc-13 (13.2.0-9ubuntu1) ... Setting up libdpkg-perl (1.22.2ubuntu2) ... Setting up libnsl2:armhf (1.3.0-3) ... Setting up gcc (4:13.2.0-2ubuntu1) ... Setting up dpkg-dev (1.22.2ubuntu2) ... Setting up libnsl-dev:armhf (1.3.0-3) ... Setting up libc6-dev:armhf (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:armhf (13.2.0-9ubuntu1) ... Setting up g++-13 (13.2.0-9ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.16) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27628990 armhf noble-proposed -c chroot:build-PACKAGEBUILD-27628990 --arch=armhf --dist=noble-proposed --nolog altree_1.3.2-2build1.dsc Initiating build PACKAGEBUILD-27628990 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos03-arm64-020.buildd +==============================================================================+ | altree 1.3.2-2build1 (armhf) Wed, 10 Jan 2024 19:00:38 +0000 | +==============================================================================+ Package: altree Version: 1.3.2-2build1 Source Version: 1.3.2-2build1 Distribution: noble-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27628990/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/altree-QmloQU/resolver-uVXlTv' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- altree_1.3.2-2build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/altree-QmloQU/altree-1.3.2' with '<>' I: NOTICE: Log filtering will replace 'build/altree-QmloQU' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev, build-essential, fakeroot Filtered Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [477 B] Get:5 copy:/<>/apt_archive ./ Packages [560 B] Fetched 1994 B in 0s (57.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz fig2dev file fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext gettext-base ghostscript groff-base intltool-debian latex-make libapache-pom-java libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libbrotli1 libbsd0 libcairo2 libcommons-logging-java libcommons-parent-java libcups2 libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs-common libgs10 libgs10-common libgsl-dev libgsl27 libgslcblas0 libharfbuzz0b libice6 libicu74 libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblerc4 libmagic-mgc libmagic1 libmath-tamuanova-perl libnetpbm11 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpotrace0 libptexenc1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libsharpyuv0 libsigsegv2 libsm6 libsub-override-perl libsynctex2 libtamuanova-0.2 libteckit0 libtest-deep-perl libtexlua53-5 libtiff6 libtool libuchardet0 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db media-types netbase netpbm po-debconf poppler-data preview-latex-style python3 python3-minimal python3.11 python3.11-minimal t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-lang-french texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils xfonts-encodings xfonts-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make xfig fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gawk-doc gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java cups-common low-memory-monitor gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex python3-pygments icc-profiles libfile-which-perl texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex Recommended packages: curl | wget | lynx inkscape dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback libltdl-dev libmail-sendmail-perl lmodern dvisvgm tex-gyre tipa default-jre libspreadsheet-parseexcel-perl texlive-plain-generic ruby tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz fig2dev file fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext gettext-base ghostscript groff-base intltool-debian latex-make libapache-pom-java libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libbrotli1 libbsd0 libcairo2 libcommons-logging-java libcommons-parent-java libcups2 libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs-common libgs10 libgs10-common libgsl-dev libgsl27 libgslcblas0 libharfbuzz0b libice6 libicu74 libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblerc4 libmagic-mgc libmagic1 libmath-tamuanova-perl libnetpbm11 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpotrace0 libptexenc1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libsharpyuv0 libsigsegv2 libsm6 libsub-override-perl libsynctex2 libtamuanova-0.2 libteckit0 libtest-deep-perl libtexlua53-5 libtiff6 libtool libuchardet0 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db media-types netbase netpbm po-debconf poppler-data preview-latex-style python3 python3-minimal python3.11 python3.11-minimal sbuild-build-depends-main-dummy t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-lang-french texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils xfonts-encodings xfonts-utils 0 upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 238 MB of archives. After this operation, 625 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [774 B] Get:2 http://ftpmaster.internal/ubuntu noble/main armhf libpython3.11-minimal armhf 3.11.7-2 [825 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main armhf libexpat1 armhf 2.5.0-2 [63.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main armhf python3.11-minimal armhf 3.11.7-2 [1904 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-minimal armhf 3.11.4-5ubuntu1 [26.9 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main armhf media-types all 10.1.0 [27.5 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main armhf netbase all 6.4 [13.1 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main armhf libpython3.11-stdlib armhf 3.11.7-2 [1816 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main armhf python3.11 armhf 3.11.7-2 [583 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3-stdlib armhf 3.11.4-5ubuntu1 [9568 B] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3 armhf 3.11.4-5ubuntu1 [22.9 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main armhf libsigsegv2 armhf 2.14-1ubuntu1 [14.4 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main armhf gawk armhf 1:5.2.1-2 [414 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main armhf poppler-data all 0.4.12-1 [2060 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main armhf libbsd0 armhf 0.11.8-1 [36.5 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdbus-1-3 armhf 1.14.10-3ubuntu1 [188 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main armhf libelf1 armhf 0.190-1 [49.8 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main armhf libglib2.0-0 armhf 2.78.3-1 [1396 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main armhf libicu74 armhf 74.2-1ubuntu1 [10.5 MB] Get:20 http://ftpmaster.internal/ubuntu noble/main armhf libxml2 armhf 2.9.14+dfsg-1.3build3 [595 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main armhf ucf all 3.0043+nmu1 [56.5 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main armhf libmagic-mgc armhf 1:5.45-2 [307 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main armhf libmagic1 armhf 1:5.45-2 [80.9 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main armhf file armhf 1:5.45-2 [21.1 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main armhf gettext-base armhf 0.21-14 [37.6 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main armhf libuchardet0 armhf 0.0.8-1 [73.9 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main armhf groff-base armhf 1.23.0-3 [948 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main armhf libpipeline1 armhf 1.5.7-1 [26.2 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main armhf libxau6 armhf 1:1.0.9-1build5 [6622 B] Get:30 http://ftpmaster.internal/ubuntu noble/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu5 [9452 B] Get:31 http://ftpmaster.internal/ubuntu noble/main armhf libxcb1 armhf 1.15-1 [45.4 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main armhf libx11-data all 2:1.8.7-1 [115 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main armhf libx11-6 armhf 2:1.8.7-1 [585 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main armhf libxext6 armhf 2:1.3.4-1build1 [26.4 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main armhf man-db armhf 2.12.0-1 [1195 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main armhf m4 armhf 1.4.19-4 [235 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main armhf autoconf all 2.71-3 [339 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main armhf autotools-dev all 20220109.1 [44.9 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main armhf automake all 1:1.16.5-1.3 [558 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main armhf autopoint all 0.21-14 [422 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main armhf libdebhelper-perl all 13.11.9ubuntu1 [97.7 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main armhf libtool all 2.4.7-7 [166 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main armhf dh-autoreconf all 20 [16.1 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main armhf libsub-override-perl all 0.10-1 [10.0 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main armhf dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:48 http://ftpmaster.internal/ubuntu noble/main armhf libdw1 armhf 0.190-1 [235 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main armhf debugedit armhf 1:5.0-5 [42.8 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main armhf dwz armhf 0.15-1 [109 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main armhf gettext armhf 0.21-14 [799 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main armhf debhelper all 13.11.9ubuntu1 [968 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main armhf libfontenc1 armhf 1:1.1.4-1build3 [12.2 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main armhf libbrotli1 armhf 1.1.0-2 [318 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [331 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main armhf xfonts-utils armhf 1:7.7+6build2 [89.8 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main armhf fonts-urw-base35 all 20200910-7 [11.0 MB] Get:62 http://ftpmaster.internal/ubuntu noble/main armhf libgs-common all 10.02.1~dfsg1-0ubuntu2 [174 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main armhf libgs10-common all 10.02.1~dfsg1-0ubuntu2 [488 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main armhf libavahi-common-data armhf 0.8-13ubuntu2 [29.5 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main armhf libavahi-common3 armhf 0.8-13ubuntu2 [20.3 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main armhf libavahi-client3 armhf 0.8-13ubuntu2 [24.4 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main armhf libcups2 armhf 2.4.6-0ubuntu3 [236 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main armhf fontconfig-config armhf 2.14.2-6ubuntu1 [36.0 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main armhf libfontconfig1 armhf 2.14.2-6ubuntu1 [112 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main armhf libidn12 armhf 1.41-1 [55.0 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main armhf libijs-0.35 armhf 0.35-15.1 [13.6 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main armhf libjbig2dec0 armhf 0.20-1 [57.4 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu1 [123 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] Get:75 http://ftpmaster.internal/ubuntu noble/main armhf libopenjp2-7 armhf 2.5.0-2 [160 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main armhf libpaper1 armhf 1.1.29 [12.5 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main armhf libdeflate0 armhf 1.18-1 [40.7 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main armhf libjbig0 armhf 2.1-6.1ubuntu1 [24.9 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu1 [152 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main armhf libsharpyuv0 armhf 1.3.2-0.3 [13.3 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main armhf libwebp7 armhf 1.3.2-0.3 [183 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main armhf libtiff6 armhf 4.5.1+git230720-3ubuntu1 [201 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main armhf libice6 armhf 2:1.0.10-1build2 [36.4 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main armhf libsm6 armhf 2:1.2.3-1build2 [15.1 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main armhf libxt6 armhf 1:1.2.1-1.1 [142 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main armhf libgs10 armhf 10.02.1~dfsg1-0ubuntu2 [4373 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main armhf ghostscript armhf 10.02.1~dfsg1-0ubuntu2 [43.2 kB] Get:88 http://ftpmaster.internal/ubuntu noble/universe armhf libnetpbm11 armhf 2:11.05.01-3 [96.4 kB] Get:89 http://ftpmaster.internal/ubuntu noble/universe armhf netpbm armhf 2:11.05.01-3 [1911 kB] Get:90 http://ftpmaster.internal/ubuntu noble/universe armhf fig2dev armhf 1:3.2.9-3 [402 kB] Get:91 http://ftpmaster.internal/ubuntu noble/universe armhf fonts-lmodern all 2.005-1 [4799 kB] Get:92 http://ftpmaster.internal/ubuntu noble/universe armhf tex-common all 6.18 [32.8 kB] Get:93 http://ftpmaster.internal/ubuntu noble/universe armhf latex-make all 2.4.3-1 [1020 kB] Get:94 http://ftpmaster.internal/ubuntu noble/universe armhf libapache-pom-java all 29-2 [5284 B] Get:95 http://ftpmaster.internal/ubuntu noble/main armhf libblas3 armhf 3.11.0-2build1 [123 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main armhf libblas-dev armhf 3.11.0-2build1 [132 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main armhf libpixman-1-0 armhf 0.42.2-1 [184 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-render0 armhf 1.15-1 [15.2 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-shm0 armhf 1.15-1 [5852 B] Get:100 http://ftpmaster.internal/ubuntu noble/main armhf libxrender1 armhf 1:0.9.10-1.1 [16.5 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main armhf libcairo2 armhf 1.18.0-1 [481 kB] Get:102 http://ftpmaster.internal/ubuntu noble/universe armhf libcommons-parent-java all 56-1 [10.7 kB] Get:103 http://ftpmaster.internal/ubuntu noble/universe armhf libcommons-logging-java all 1.3.0-1 [68.1 kB] Get:104 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noble/universe armhf libpotrace0 armhf 1.16-2 [14.6 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main armhf libptexenc1 armhf 2023.20230311.66589-8build1 [36.8 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main armhf libsynctex2 armhf 2023.20230311.66589-8build1 [47.3 kB] Get:116 http://ftpmaster.internal/ubuntu noble/universe armhf libteckit0 armhf 2.5.11+ds1-1 [336 kB] Get:117 http://ftpmaster.internal/ubuntu noble/universe armhf libtest-deep-perl all 1.204-1 [47.1 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main armhf libtexlua53-5 armhf 2023.20230311.66589-8build1 [97.4 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main armhf libxmu6 armhf 2:1.1.3-3 [41.6 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main armhf libxpm4 armhf 1:3.5.17-1 [29.9 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main armhf libxaw7 armhf 2:1.0.14-1 [157 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main armhf libxi6 armhf 2:1.8-1build1 [26.6 kB] Get:123 http://ftpmaster.internal/ubuntu noble/universe armhf libzzip-0-13 armhf 0.13.72+dfsg.1-1.1 [23.0 kB] Get:124 http://ftpmaster.internal/ubuntu noble/universe armhf preview-latex-style all 13.2-1 [347 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main armhf t1utils armhf 1.41-4build2 [53.1 kB] Get:126 http://ftpmaster.internal/ubuntu noble/universe armhf texlive-binaries armhf 2023.20230311.66589-8build1 [7156 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main armhf xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] Get:128 http://ftpmaster.internal/ubuntu noble/universe armhf texlive-base all 2023.20231207-1 [21.7 MB] Get:129 http://ftpmaster.internal/ubuntu noble/universe armhf texlive-fonts-recommended all 2023.20231207-1 [4972 kB] Get:130 http://ftpmaster.internal/ubuntu noble/universe armhf texlive-lang-french all 2023.20231207-1 [92.2 MB] Get:131 http://ftpmaster.internal/ubuntu noble/universe armhf texlive-latex-base all 2023.20231207-1 [1231 kB] Get:132 http://ftpmaster.internal/ubuntu noble/universe armhf libfontbox-java all 1:1.8.16-5 [208 kB] Get:133 http://ftpmaster.internal/ubuntu noble/universe armhf libpdfbox-java all 1:1.8.16-5 [5521 kB] Get:134 http://ftpmaster.internal/ubuntu noble/universe armhf texlive-latex-recommended all 2023.20231207-1 [8818 kB] Get:135 http://ftpmaster.internal/ubuntu noble/universe armhf texlive-pictures all 2023.20231207-1 [16.6 MB] Get:136 http://ftpmaster.internal/ubuntu noble/universe armhf texlive-latex-extra all 2023.20231207-3 [19.2 MB] Preconfiguring packages ... Fetched 238 MB in 8s (28.2 MB/s) Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... 15490 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.7-2_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.7-2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.5.0-2_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.7-2_armhf.deb ... Unpacking python3.11-minimal (3.11.7-2) ... Setting up libpython3.11-minimal:armhf (3.11.7-2) ... Setting up libexpat1:armhf (2.5.0-2) ... Setting up python3.11-minimal (3.11.7-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 15804 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.4-5ubuntu1_armhf.deb ... 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Setting up libgs-common (10.02.1~dfsg1-0ubuntu2) ... Setting up libbrotli1:armhf (1.1.0-2) ... Setting up libfontbox-java (1:1.8.16-5) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:armhf (1:5.45-2) ... Setting up libnetpbm11:armhf (2:11.05.01-3) ... Setting up libdeflate0:armhf (1.18-1) ... Setting up gettext-base (0.21-14) ... Setting up libgsl27:armhf (2.7.1+dfsg-6ubuntu1) ... Setting up m4 (1.4.19-4) ... Setting up libzzip-0-13:armhf (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.45-2) ... Setting up libjbig0:armhf (2.1-6.1ubuntu1) ... Setting up poppler-data (0.4.12-1) ... Setting up libfontenc1:armhf (1:1.1.4-1build3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.11.0-2build1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libfreetype6:armhf (2.13.2+dfsg-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjbig2dec0:armhf (0.20-1) ... Setting up libteckit0:armhf (2.5.11+ds1-1) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:armhf (0.8-13ubuntu2) ... Setting up libdbus-1-3:armhf (1.14.10-3ubuntu1) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up t1utils (1.41-4build2) ... Setting up libtexlua53-5:armhf (2023.20230311.66589-8build1) ... Setting up libidn12:armhf (1.41-1) ... Setting up autopoint (0.21-14) ... Setting up ucf (3.0043+nmu1) ... Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ... Setting up libkpathsea6:armhf (2023.20230311.66589-8build1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:armhf (1.3.2-0.3) ... Setting up libicu74:armhf (74.2-1ubuntu1) ... Setting up libtamuanova-0.2 (0.2-5build1) ... Setting up libuchardet0:armhf (0.0.8-1) ... Setting up fonts-lmodern (2.005-1) ... Setting up libopenjp2-7:armhf (2.5.0-2) ... Setting up libsub-override-perl (0.10-1) ... Setting up libharfbuzz0b:armhf (8.0.1-1build1) ... Setting up netbase (6.4) ... Setting up libbsd0:armhf (0.11.8-1) ... Setting up libelf1:armhf (0.190-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3build3) ... Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libblas-dev:armhf (3.11.0-2build1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libsynctex2:armhf (2023.20230311.66589-8build1) ... Setting up libpotrace0:armhf (1.16-2) ... Setting up libjpeg8:armhf (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libpaper1:armhf (1.1.29) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-1build2) ... Setting up libdw1:armhf (0.190-1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu5) ... Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-14) ... Setting up libgsl-dev (2.7.1+dfsg-6ubuntu1) ... Setting up libpdfbox-java (1:1.8.16-5) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up libpython3.11-stdlib:armhf (3.11.7-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:armhf (0.8-13ubuntu2) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up libpaper-utils (1.1.29) ... Setting up xfonts-utils (1:7.7+6build2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libmath-tamuanova-perl (1.0.2-3build1) ... Setting up libptexenc1:armhf (2023.20230311.66589-8build1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libtiff6:armhf (4.5.1+git230720-3ubuntu1) ... Setting up debugedit (1:5.0-5) ... Setting up libx11-6:armhf (2:1.8.7-1) ... Setting up libsm6:armhf (2:1.2.3-1build2) ... Setting up libavahi-client3:armhf (0.8-13ubuntu2) ... Setting up libpython3-stdlib:armhf (3.11.4-5ubuntu1) ... Setting up python3.11 (3.11.7-2) ... Setting up libxpm4:armhf (1:3.5.17-1) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up preview-latex-style (13.2-1) ... Setting up libxext6:armhf (2:1.3.4-1build1) ... Setting up python3 (3.11.4-5ubuntu1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up latex-make (2.4.3-1) ... Setting up netpbm (2:11.05.01-3) ... Setting up libxt6:armhf (1:1.2.1-1.1) ... Setting up libcups2:armhf (2.4.6-0ubuntu3) ... Setting up libgs10-common (10.02.1~dfsg1-0ubuntu2) ... Setting up libxmu6:armhf (2:1.1.3-3) ... Setting up libxi6:armhf (2:1.8-1build1) ... Setting up fontconfig-config (2.14.2-6ubuntu1) ... Setting up debhelper (13.11.9ubuntu1) ... Setting up libxaw7:armhf (2:1.0.14-1) ... Setting up libfontconfig1:armhf (2.14.2-6ubuntu1) ... Setting up libgs10:armhf (10.02.1~dfsg1-0ubuntu2) ... Setting up ghostscript (10.02.1~dfsg1-0ubuntu2) ... Setting up fig2dev (1:3.2.9-3) ... Setting up libcairo2:armhf (1.18.0-1) ... Setting up texlive-binaries (2023.20230311.66589-8build1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2023.20231207-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-lang-french (2023.20231207-1) ... Setting up texlive-latex-base (2023.20231207-1) ... Setting up texlive-latex-recommended (2023.20231207-1) ... Setting up texlive-pictures (2023.20231207-1) ... Setting up texlive-fonts-recommended (2023.20231207-1) ... Setting up texlive-latex-extra (2023.20231207-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (255.2-3ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 arm64 (armv7l) Toolchain package versions: binutils_2.41.50.20231227-1ubuntu1 dpkg-dev_1.22.2ubuntu2 g++-13_13.2.0-9ubuntu1 gcc-13_13.2.0-9ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.8 apt-utils_2.7.8 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13ubuntu6 base-passwd_3.6.3 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41.50.20231227-1ubuntu1 binutils-arm-linux-gnueabihf_2.41.50.20231227-1ubuntu1 binutils-common_2.41.50.20231227-1ubuntu1 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.4-2ubuntu2 cpp_4:13.2.0-2ubuntu1 cpp-13_13.2.0-9ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.83 debconf-i18n_1.5.83 debhelper_13.11.9ubuntu1 debianutils_5.16 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.2ubuntu2 dpkg-dev_1.22.2ubuntu2 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.2-1 fig2dev_1:3.2.9-3 file_1:5.45-2 findutils_4.9.0-5 fontconfig-config_2.14.2-6ubuntu1 fonts-lmodern_2.005-1 fonts-urw-base35_20200910-7 g++_4:13.2.0-2ubuntu1 g++-13_13.2.0-9ubuntu1 gawk_1:5.2.1-2 gcc_4:13.2.0-2ubuntu1 gcc-13_13.2.0-9ubuntu1 gcc-13-base_13.2.0-9ubuntu1 gettext_0.21-14 gettext-base_0.21-14 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libglib2.0-0_2.78.3-1 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.1-4ubuntu7 libgomp1_13.2.0-9ubuntu1 libgpg-error-l10n_1.47-3build1 libgpg-error0_1.47-3build1 libgpm2_1.20.7-10build1 libgraphite2-3_1.3.14-2 libgs-common_10.02.1~dfsg1-0ubuntu2 libgs10_10.02.1~dfsg1-0ubuntu2 libgs10-common_10.02.1~dfsg1-0ubuntu2 libgsl-dev_2.7.1+dfsg-6ubuntu1 libgsl27_2.7.1+dfsg-6ubuntu1 libgslcblas0_2.7.1+dfsg-6ubuntu1 libgssapi-krb5-2_1.20.1-5build1 libharfbuzz0b_8.0.1-1build1 libhogweed6_3.9.1-2 libice6_2:1.0.10-1build2 libicu74_74.2-1ubuntu1 libidn12_1.41-1 libidn2-0_2.3.4-1build1 libijs-0.35_0.35-15.1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libjansson4_2.14-2 libjbig0_2.1-6.1ubuntu1 libjbig2dec0_0.20-1 libjpeg-turbo8_2.1.5-2ubuntu1 libjpeg8_8c-2ubuntu11 libjson-c5_0.17-1 libk5crypto3_1.20.1-5build1 libkeyutils1_1.6.3-2 libkmod2_30+20230601-2ubuntu1 libkpathsea6_2023.20230311.66589-8build1 libkrb5-3_1.20.1-5build1 libkrb5support0_1.20.1-5build1 liblerc4_4.0.0+ds-4ubuntu1 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perl-modules-5.36_5.36.0-10ubuntu1 perl-modules-5.38_5.38.2-2 pinentry-curses_1.2.1-3ubuntu1 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 poppler-data_0.4.12-1 preview-latex-style_13.2-1 procps_2:4.0.4-2ubuntu1 psmisc_23.6-1 python3_3.11.4-5ubuntu1 python3-minimal_3.11.4-5ubuntu1 python3.11_3.11.7-2 python3.11-minimal_3.11.7-2 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 systemd_255.2-3ubuntu1 systemd-dev_255.2-3ubuntu1 systemd-sysv_255.2-3ubuntu1 sysvinit-utils_3.08-3ubuntu1 t1utils_1.41-4build2 tar_1.35+dfsg-2 tex-common_6.18 texlive-base_2023.20231207-1 texlive-binaries_2023.20230311.66589-8build1 texlive-fonts-recommended_2023.20231207-1 texlive-lang-french_2023.20231207-1 texlive-latex-base_2023.20231207-1 texlive-latex-extra_2023.20231207-3 texlive-latex-recommended_2023.20231207-1 texlive-pictures_2023.20231207-1 tzdata_2023d-1ubuntu2 ubuntu-keyring_2023.11.28.1 ucf_3.0043+nmu1 usrmerge_38ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 x11-common_1:7.7+23ubuntu2 xdg-utils_1.1.3-4.1ubuntu3 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build2 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: altree Binary: altree, altree-examples Architecture: any all Version: 1.3.2-2build1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Vincent Danjean , Andreas Tille Homepage: https://gitlab.inria.fr/NGS/ALTree Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/altree Vcs-Git: https://salsa.debian.org/med-team/altree.git Testsuite: autopkgtest Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev Package-List: altree deb science optional arch=any altree-examples deb science optional arch=all Checksums-Sha1: 095d136e5ffbeeb2f0e0da550a8a06e8ff5ca7f0 610823 altree_1.3.2.orig.tar.gz a5d9919b5b4013db26d7c26912bd9b86fd4cd7c7 7268 altree_1.3.2-2build1.debian.tar.xz Checksums-Sha256: f9d5beda91aaab219e1397b4c19e0649788a871c8c29fa1e8343a53c5f710b8e 610823 altree_1.3.2.orig.tar.gz 0105ff53d712c0b9a0b239c35b0b727a6cb4e52c2f3f24a5a6358b1a782361c5 7268 altree_1.3.2-2build1.debian.tar.xz Files: fd17066d7f6bc07baacf526ff3ee1c3b 610823 altree_1.3.2.orig.tar.gz a20c0044007e7bbf8b717ef03e977c1c 7268 altree_1.3.2-2build1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEVovyKmYzfL/Jprm3LIPbyOm9DjcFAmWemZwACgkQLIPbyOm9 DjfVdBAAk8La051X2pogUXVGE+FBu6tZitQr0WQByVWlw8GrU251qqdBibp4Asis 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info: unpacking altree_1.3.2.orig.tar.gz dpkg-source: info: unpacking altree_1.3.2-2build1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27628990 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27628990 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27628990 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package altree dpkg-buildpackage: info: source version 1.3.2-2build1 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' /usr/bin/make -C Documentation distclean || true make[2]: Entering directory '/<>/Documentation' make[2]: Nothing to be done for 'distclean'. make[2]: Leaving directory '/<>/Documentation' dh_auto_clean make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build1 -Wdate-time -D_FORTIFY_SOURCE=3" "LD=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build1 -Wl,-Bsymbolic-functions -Wl,-z,relro" Checking if your kit is complete... Warning: the following files are missing in your kit: CUtils/c_sources/MYMETA.json CUtils/MYMETA.json MYMETA.json Please inform the author. MakeMaker (v7.70) Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib' Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib' Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for altree Writing MYMETA.yml and MYMETA.json debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make -C Documentation pdf make[2]: Entering directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[3]: Entering directory '/<>/Documentation' make[3]: Nothing to be done for 'LU_WATCH_FILES_SAVE'. make[3]: Leaving directory '/<>/Documentation' ======> building manual.pdf <====== Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: Reference `fig:altree' on page 2 undefined on input line 121. Package texdepends Warning: No 'fig/overview.pdftex' file (texdepends) using 1 for graphic dimensions on input line 124. Package texdepends Warning: Figure 'fig/overview.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 124. LaTeX Warning: Reference `fig:nesting_algo' on page 2 undefined on input line 143. Package natbib Warning: Citation `Bardel05' on page 2 undefined on input line 143. Package natbib Warning: Citation `Ge03' on page 2 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 2 undefined on input line 146. Package texdepends Warning: No 'fig/altree-q.pdftex' file (texdepends) using 1 for graphic dimensions on input line 150. Package texdepends Warning: Figure 'fig/altree-q.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 150. LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180. Package natbib Warning: Citation `Stephens01' on page 5 undefined on input line 197. Package natbib Warning: Citation `Stephens03' on page 5 undefined on input line 197. Package natbib Warning: Citation `Becker04' on page 5 undefined on input line 198. Package natbib Warning: Citation `Swofford02' on page 5 undefined on input line 199. Package natbib Warning: Citation `Felsenstein04' on page 5 undefined on input line 200. Package natbib Warning: Citation `YangPAML' on page 5 undefined on input line 200. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278. Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281. Underfull \hbox (badness 1142) in paragraph at lines 281--284 []\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail- Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284. Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288. Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] LaTeX Warning: Reference `help' on page 13 undefined on input line 564. Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 632. LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 633. Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] LaTeX Warning: Reference `help' on page 16 undefined on input line 701. Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. LaTeX Warning: Reference `fig:option_b' on page 19 undefined on input line 846. LaTeX Warning: File `option_b.fig' not found on input line 852. Package texdepends Warning: No 'fig/option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig/option_b_1.fig' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. LaTeX Warning: File `option_b.fig' not found on input line 853. Package texdepends Warning: No 'fig/option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. Package texdepends Warning: Figure 'fig/option_b_2.fig' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 853. Overfull \hbox (9.75981pt too wide) in paragraph at lines 850--865 [][] Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941. Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Package texdepends Warning: No 'fig/create_file_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1009. Package texdepends Warning: Figure 'fig/create_file_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1009. Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Package texdepends Warning: No 'fig/create_file_phy.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1043. Package texdepends Warning: Figure 'fig/create_file_phy.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1043. Package texdepends Warning: No 'fig/association_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1104. Package texdepends Warning: Figure 'fig/association_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1104. Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig/localisation_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1130. Package texdepends Warning: Figure 'fig/localisation_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1130. Package texdepends Warning: No 'fig/association_phylip.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1168. Package texdepends Warning: Figure 'fig/association_phylip.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1168. Package natbib Warning: Citation `Guindon03' on page 28 undefined on input line 1181. Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Package texdepends Warning: No 'fig/association_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1217. Package texdepends Warning: Figure 'fig/association_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1217. Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig/localisation_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1252. Package texdepends Warning: Figure 'fig/localisation_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1252. Chapter 7. Package texdepends Warning: Figure(s) missing. Check dependencies again. Package natbib Warning: There were undefined citations. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `manual.out' has changed. (rerunfilecheck) Rerun to get outlines right /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[3]: Entering directory '/<>/Documentation' ======> building fig/option_b.subfig.mk <====== make[3]: Leaving directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[3]: Entering directory '/<>/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') LU_rebuild_texdepends: new depends required ******************************************** /usr/bin/make LU_REC_LEVEL=2 manual.pdf make[4]: Entering directory '/<>/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2023/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) ======> building fig/overview.pdftex <====== ======> building fig/overview.pdftex_t <====== ======> building fig/altree-q.pdftex <====== ======> building fig/altree-q.pdftex_t <====== ======> building fig/option_b_1.fig <====== ======> building fig/option_b_2.fig <====== ======> building fig/create_file_paup.pdftex <====== ======> building fig/create_file_paup.pdftex_t <====== ======> building fig/create_file_phy.pdftex <====== ======> building fig/create_file_phy.pdftex_t <====== ======> building fig/association_paup.pdftex <====== ======> building fig/association_paup.pdftex_t <====== ======> building fig/localisation_paup.pdftex <====== ======> building fig/localisation_paup.pdftex_t <====== ======> building fig/association_phylip.pdftex <====== ======> building fig/association_phylip.pdftex_t <====== ======> building fig/association_paml.pdftex <====== ======> building fig/association_paml.pdftex_t <====== ======> building fig/localisation_paml.pdftex <====== ======> building fig/localisation_paml.pdftex_t <====== Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[5]: Entering directory '/<>/Documentation' make[5]: Leaving directory '/<>/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. Package natbib Warning: Citation `Bardel05' on page 3 undefined on input line 143. Package natbib Warning: Citation `Ge03' on page 3 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 3 undefined on input line 146. LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180. Package natbib Warning: Citation `Stephens01' on page 4 undefined on input line 197. Package natbib Warning: Citation `Stephens03' on page 4 undefined on input line 197. Package natbib Warning: Citation `Becker04' on page 4 undefined on input line 198. Package natbib Warning: Citation `Swofford02' on page 4 undefined on input line 199. Package natbib Warning: Citation `Felsenstein04' on page 4 undefined on input line 200. Package natbib Warning: Citation `YangPAML' on page 4 undefined on input line 200. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278. Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281. Underfull \hbox (badness 1142) in paragraph at lines 281--284 []\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail- Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284. Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288. Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. Package texdepends Warning: No 'fig/option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig/option_b_1.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. Package texdepends Warning: No 'fig/option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. Package texdepends Warning: Figure 'fig/option_b_2.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 853. Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941. Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package natbib Warning: Citation `Guindon03' on page 26 undefined on input line 1181. Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 []\T1/ptm/m/n/10.95 Z Yang. Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho Package texdepends Warning: Figure(s) missing. Check dependencies again. Package natbib Warning: There were undefined citations. Package natbib Warning: Citation(s) may have changed. (natbib) Rerun to get citations correct. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[5]: Entering directory '/<>/Documentation' make[5]: Leaving directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[5]: Entering directory '/<>/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') LU_rebuild_texdepends: new depends required ******************************************** /usr/bin/make LU_REC_LEVEL=3 manual.pdf make[6]: Entering directory '/<>/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2023/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) ======> building fig/option_b_1.pdftex <====== ======> building fig/option_b_1.pdftex_t <====== ======> building fig/option_b_2.pdftex <====== ======> building fig/option_b_2.pdftex_t <====== Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[7]: Entering directory '/<>/Documentation' make[7]: Leaving directory '/<>/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 []\T1/ptm/m/n/10.95 Z Yang. Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[7]: Entering directory '/<>/Documentation' make[7]: Leaving directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[7]: Entering directory '/<>/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') ******************************************** /usr/bin/make LU_REC_LEVEL=4 manual.pdf make[8]: Entering directory '/<>/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2023/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[9]: Entering directory '/<>/Documentation' make[9]: Leaving directory '/<>/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[9]: Entering directory '/<>/Documentation' make[9]: Leaving directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[9]: Entering directory '/<>/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' /usr/bin/make LU_REC_LEVEL=5 manual.pdf make[10]: Entering directory '/<>/Documentation' make[10]: 'manual.pdf' is up to date. make[10]: Leaving directory '/<>/Documentation' make[9]: Leaving directory '/<>/Documentation' make[8]: Leaving directory '/<>/Documentation' make[7]: Leaving directory '/<>/Documentation' make[6]: Leaving directory '/<>/Documentation' make[5]: Leaving directory '/<>/Documentation' make[4]: Leaving directory '/<>/Documentation' make[3]: Leaving directory '/<>/Documentation' make[2]: Leaving directory '/<>/Documentation' dh_auto_build make -j4 make[2]: Entering directory '/<>' make[3]: Entering directory '/<>/CUtils' make -C c_sources make[4]: Entering directory '/<>/CUtils/c_sources' arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" chisq.c cp ALTree/Site.pm blib/lib/ALTree/Site.pm cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm cp ALTree/Node.pm blib/lib/ALTree/Node.pm cp ALTree/Input.pm blib/lib/ALTree/Input.pm cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm cp ALTree/Base.pm blib/lib/ALTree/Base.pm cp ALTree/Import.pm blib/lib/ALTree/Import.pm cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm Running Mkbootstrap for CUtils () arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" double_permutation.c cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils) chmod 644 "CUtils.bs" "/usr/bin/perl" "/usr/share/perl/5.38.2/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.38/ExtUtils/typemap' CUtils.xs > CUtils.xsc "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" fisher.c Please specify prototyping behavior for CUtils.xs (see perlxs manual) mv CUtils.xsc CUtils.c arm-linux-gnueabihf-gcc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" CUtils.c arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" mt19937ar.c arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" myrand.c arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" resampling.c arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" rhyper.c arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" stats.c arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" z.c z.c:12:13: warning: ‘sccsfid’ defined but not used [-Wunused-variable] 12 | static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85"; | ^~~~~~~ ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o : libaltree-cutils.a make[4]: Leaving directory '/<>/CUtils/c_sources' make[4]: Entering directory '/<>/CUtils/c_sources' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/CUtils/c_sources' rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build1 -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong CUtils.o -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \ -lm -lpthread -lgsl -lblas \ chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so Manifying 1 pod document make[3]: Leaving directory '/<>/CUtils' cp progs/altree blib/script/altree cp progs/altree-add-S blib/script/altree-add-S cp progs/altree-convert blib/script/altree-convert "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S Manifying 3 pod documents make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/<>/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/<>/CUtils' make[2]: Entering directory '/<>/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/<>/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/CUtils/c_sources' make[3]: Entering directory '/<>/CUtils/c_sources' No tests defined for ALTree::CUtils extension. make[3]: Leaving directory '/<>/CUtils/c_sources' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/ALTree-CUtils.t ....... 1..1 ok 1 - use ALTree::CUtils; ok t/double_permutation.t .. 1..3 ok 1 - use ALTree::CUtils; ok 2 - undef when bad args ok 3 - double_permutation ok All tests successful. Files=2, Tests=4, 0 wallclock secs ( 0.00 usr 0.02 sys + 0.16 cusr 0.02 csys = 0.20 CPU) Result: PASS make[2]: Leaving directory '/<>/CUtils' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/ALTree.t .. 1..1 ok 1 - use ALTree::Import; ok All tests successful. Files=1, Tests=1, 1 wallclock secs ( 0.02 usr 0.00 sys + 0.08 cusr 0.00 csys = 0.10 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/<>/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/<>/CUtils' Manifying 3 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/CUtils/CUtils.so Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/CUtils/autosplit.ix Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteSens.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Nanova.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Base.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Chi2.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Utils.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Node.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteSensPerForet.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Site.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SitePerForet.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/to_rewrite.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/CUtils.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteCollection.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Import.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SitePerTree.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteSensPerTree.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Foret.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Tree.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Input.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Sens.pm Installing /<>/debian/tmp/usr/share/man/man1/altree.1p Installing /<>/debian/tmp/usr/share/man/man1/altree-convert.1p Installing /<>/debian/tmp/usr/share/man/man1/altree-add-S.1p Installing /<>/debian/tmp/usr/share/man/man3/ALTree::CUtils.3pm Installing /<>/debian/tmp/usr/bin/altree-convert Installing /<>/debian/tmp/usr/bin/altree Installing /<>/debian/tmp/usr/bin/altree-add-S make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a 6b93e324009672b798792ffd2724a9259d44d4ed dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/CUtils/CUtils.so was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing altree-dbgsym (in debian/.debhelper/altree/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing altree (in debian/altree); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/altree/dbgsym-root/DEBIAN/control, package altree-dbgsym, directory debian/.debhelper/altree/dbgsym-root dpkg-deb: building package 'altree-dbgsym' in 'debian/.debhelper/scratch-space/build-altree/altree-dbgsym_1.3.2-2build1_armhf.deb'. pkgstripfiles: processing control file: debian/altree/DEBIAN/control, package altree, directory debian/altree pkgstripfiles: Running PNG optimization (using 4 cpus) for package altree ... pkgstripfiles: No PNG files. dpkg-deb: building package 'altree' in '../altree_1.3.2-2build1_armhf.deb'. Renaming altree-dbgsym_1.3.2-2build1_armhf.deb to altree-dbgsym_1.3.2-2build1_armhf.ddeb dpkg-genbuildinfo --build=any -O../altree_1.3.2-2build1_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../altree_1.3.2-2build1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-01-10T19:03:59Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ altree_1.3.2-2build1_armhf.changes: ----------------------------------- Format: 1.8 Date: Wed, 10 Jan 2024 14:03:17 +0100 Source: altree Binary: altree Built-For-Profiles: noudeb Architecture: armhf Version: 1.3.2-2build1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: altree - program to perform phylogeny-based association and localization a Changes: altree (1.3.2-2build1) noble; urgency=medium . * No-change rebuild for the perl update. Checksums-Sha1: 1baada2cee1d83fd75c8d9c853b6c7687757b3b4 345154 altree-dbgsym_1.3.2-2build1_armhf.ddeb 66735510583208385904505344e9cfd77ecb8ad8 9307 altree_1.3.2-2build1_armhf.buildinfo 8991e9f2aee594c6d0b4d0eb4d77239d45ecf228 338080 altree_1.3.2-2build1_armhf.deb Checksums-Sha256: 0da9a9c04be0d27107e7cbe0641188dc8c1aca6b2e9aa17862e0a9cc475b03ae 345154 altree-dbgsym_1.3.2-2build1_armhf.ddeb f7989ea8fb35233d49da4a50271dcbf5901369ae46dc9a498229ccc3bf41f6eb 9307 altree_1.3.2-2build1_armhf.buildinfo df3f508363865cd2360e5a14b7c00263007d7254e195c304a2a78be9f488ed04 338080 altree_1.3.2-2build1_armhf.deb Files: e466d50578ade0c4c1d24868f3fd3d71 345154 debug optional altree-dbgsym_1.3.2-2build1_armhf.ddeb b3367295529a9068e705d4b5521589bc 9307 science optional altree_1.3.2-2build1_armhf.buildinfo c48a5aecee2fe65477cbf9f11b9c77a1 338080 science optional altree_1.3.2-2build1_armhf.deb /<>/altree_1.3.2-2build1_armhf.changes.new could not be renamed to /<>/altree_1.3.2-2build1_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: altree Binary: altree altree-dbgsym Architecture: armhf Version: 1.3.2-2build1 Checksums-Md5: e466d50578ade0c4c1d24868f3fd3d71 345154 altree-dbgsym_1.3.2-2build1_armhf.ddeb c48a5aecee2fe65477cbf9f11b9c77a1 338080 altree_1.3.2-2build1_armhf.deb Checksums-Sha1: 1baada2cee1d83fd75c8d9c853b6c7687757b3b4 345154 altree-dbgsym_1.3.2-2build1_armhf.ddeb 8991e9f2aee594c6d0b4d0eb4d77239d45ecf228 338080 altree_1.3.2-2build1_armhf.deb Checksums-Sha256: 0da9a9c04be0d27107e7cbe0641188dc8c1aca6b2e9aa17862e0a9cc475b03ae 345154 altree-dbgsym_1.3.2-2build1_armhf.ddeb df3f508363865cd2360e5a14b7c00263007d7254e195c304a2a78be9f488ed04 338080 altree_1.3.2-2build1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Wed, 10 Jan 2024 19:03:58 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13ubuntu6), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), bash-completion (= 1:2.11-8), binutils (= 2.41.50.20231227-1ubuntu1), binutils-arm-linux-gnueabihf (= 2.41.50.20231227-1ubuntu1), binutils-common (= 2.41.50.20231227-1ubuntu1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), coreutils (= 9.4-2ubuntu2), cpp (= 4:13.2.0-2ubuntu1), cpp-13 (= 13.2.0-9ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.83), debhelper (= 13.11.9ubuntu1), debianutils (= 5.16), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.2ubuntu2), dpkg-dev (= 1.22.2ubuntu2), dwz (= 0.15-1), fig2dev (= 1:3.2.9-3), file (= 1:5.45-2), findutils (= 4.9.0-5), fontconfig-config (= 2.14.2-6ubuntu1), fonts-lmodern (= 2.005-1), fonts-urw-base35 (= 20200910-7), g++ (= 4:13.2.0-2ubuntu1), g++-13 (= 13.2.0-9ubuntu1), gawk (= 1:5.2.1-2), gcc (= 4:13.2.0-2ubuntu1), gcc-13 (= 13.2.0-9ubuntu1), gcc-13-base (= 13.2.0-9ubuntu1), gettext (= 0.21-14), gettext-base (= 0.21-14), ghostscript (= 10.02.1~dfsg1-0ubuntu2), grep (= 3.11-4), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), latex-make (= 2.4.3-1), libacl1 (= 2.3.1-4ubuntu1), libapache-pom-java (= 29-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-9ubuntu1), libatomic1 (= 13.2.0-9ubuntu1), libattr1 (= 1:2.5.1-5), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libavahi-client3 (= 0.8-13ubuntu2), libavahi-common-data (= 0.8-13ubuntu2), libavahi-common3 (= 0.8-13ubuntu2), libbinutils (= 2.41.50.20231227-1ubuntu1), libblas-dev (= 3.11.0-2build1), libblas3 (= 3.11.0-2build1), libblkid1 (= 2.39.2-6ubuntu1), libbrotli1 (= 1.1.0-2), libbsd0 (= 0.11.8-1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcairo2 (= 1.18.0-1), libcap-ng0 (= 0.8.4-1), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-9ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcommons-logging-java (= 1.3.0-1), libcommons-parent-java (= 56-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.41.50.20231227-1ubuntu1), libctf0 (= 2.41.50.20231227-1ubuntu1), libcups2 (= 2.4.6-0ubuntu3), libdb5.3 (= 5.3.28+dfsg2-4), libdbus-1-3 (= 1.14.10-3ubuntu1), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.11.9ubuntu1), libdeflate0 (= 1.18-1), libdpkg-perl (= 1.22.2ubuntu2), libdw1 (= 0.190-1), libelf1 (= 0.190-1), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-2), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontbox-java (= 1:1.8.16-5), libfontconfig1 (= 2.14.2-6ubuntu1), libfontenc1 (= 1:1.1.4-1build3), libfreetype6 (= 2.13.2+dfsg-1), libgcc-13-dev (= 13.2.0-9ubuntu1), libgcc-s1 (= 13.2.0-9ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libglib2.0-0 (= 2.78.3-1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.1-4ubuntu7), libgomp1 (= 13.2.0-9ubuntu1), libgpg-error0 (= 1.47-3build1), libgraphite2-3 (= 1.3.14-2), libgs-common (= 10.02.1~dfsg1-0ubuntu2), libgs10 (= 10.02.1~dfsg1-0ubuntu2), libgs10-common (= 10.02.1~dfsg1-0ubuntu2), libgsl-dev (= 2.7.1+dfsg-6ubuntu1), libgsl27 (= 2.7.1+dfsg-6ubuntu1), libgslcblas0 (= 2.7.1+dfsg-6ubuntu1), libgssapi-krb5-2 (= 1.20.1-5build1), libharfbuzz0b (= 8.0.1-1build1), libhogweed6 (= 3.9.1-2), libice6 (= 2:1.0.10-1build2), libicu74 (= 74.2-1ubuntu1), libidn12 (= 1.41-1), libidn2-0 (= 2.3.4-1build1), libijs-0.35 (= 0.35-15.1), libisl23 (= 0.26-3), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6.1ubuntu1), libjbig2dec0 (= 0.20-1), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libkpathsea6 (= 2023.20230311.66589-8build1), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), liblerc4 (= 4.0.0+ds-4ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.5-0.3), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmath-tamuanova-perl (= 1.0.2-3build1), libmd0 (= 1.1.0-2), libmount1 (= 2.39.2-6ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncursesw6 (= 6.4+20231209-1), libnetpbm11 (= 2:11.05.01-3), libnettle8 (= 3.9.1-2), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libopenjp2-7 (= 2.5.0-2), libp11-kit0 (= 0.25.3-2ubuntu2), libpam-modules (= 1.5.2-9.1ubuntu1), libpam-modules-bin (= 1.5.2-9.1ubuntu1), libpam-runtime (= 1.5.2-9.1ubuntu1), libpam0g (= 1.5.2-9.1ubuntu1), libpaper-utils (= 1.1.29), libpaper1 (= 1.1.29), libpcre2-8-0 (= 10.42-4ubuntu1), libpdfbox-java (= 1:1.8.16-5), libperl5.38 (= 5.38.2-2), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpng16-16 (= 1.6.40-3), libpotrace0 (= 1.16-2), libptexenc1 (= 2023.20230311.66589-8build1), libpython3-stdlib (= 3.11.4-5ubuntu1), libpython3.11-minimal (= 3.11.7-2), libpython3.11-stdlib (= 3.11.7-2), libreadline8 (= 8.2-3), libseccomp2 (= 2.5.4-2ubuntu1), libselinux1 (= 3.5-1build2), libsframe1 (= 2.41.50.20231227-1ubuntu1), libsharpyuv0 (= 1.3.2-0.3), libsigsegv2 (= 2.14-1ubuntu1), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.39.2-6ubuntu1), libsqlite3-0 (= 3.44.2-1), libssl3 (= 3.0.10-1ubuntu3), libstdc++-13-dev (= 13.2.0-9ubuntu1), libstdc++6 (= 13.2.0-9ubuntu1), libsub-override-perl (= 0.10-1), libsynctex2 (= 2023.20230311.66589-8build1), libsystemd0 (= 255.2-3ubuntu1), libtamuanova-0.2 (= 0.2-5build1), libtasn1-6 (= 4.19.0-3), libteckit0 (= 2.5.11+ds1-1), libtest-deep-perl (= 1.204-1), libtexlua53-5 (= 2023.20230311.66589-8build1), libtiff6 (= 4.5.1+git230720-3ubuntu1), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1build1), libtirpc-dev (= 1.3.4+ds-1build1), libtirpc3 (= 1.3.4+ds-1build1), libtool (= 2.4.7-7), libubsan1 (= 13.2.0-9ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255.2-3ubuntu1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-6ubuntu1), libwebp7 (= 1.3.2-0.3), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libxau6 (= 1:1.0.9-1build5), libxaw7 (= 2:1.0.14-1), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxi6 (= 2:1.8-1build1), libxml2 (= 2.9.14+dfsg-1.3build3), libxmu6 (= 2:1.1.3-3), libxpm4 (= 1:3.5.17-1), libxrender1 (= 1:0.9.10-1.1), libxt6 (= 1:1.2.1-1.1), libzstd1 (= 1.5.5+dfsg2-2), libzzip-0-13 (= 0.13.72+dfsg.1-1.1), linux-libc-dev (= 6.6.0-14.14), login (= 1:4.13+dfsg1-3ubuntu1), lto-disabled-list (= 45), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), media-types (= 10.1.0), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), netbase (= 6.4), netpbm (= 2:11.05.01-3), patch (= 2.7.6-7build2), perl (= 5.38.2-2), perl-base (= 5.38.2-2), perl-modules-5.38 (= 5.38.2-2), po-debconf (= 1.0.21+nmu1), poppler-data (= 0.4.12-1), preview-latex-style (= 13.2-1), python3 (= 3.11.4-5ubuntu1), python3-minimal (= 3.11.4-5ubuntu1), python3.11 (= 3.11.7-2), python3.11-minimal (= 3.11.7-2), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-2), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-3ubuntu1), t1utils (= 1.41-4build2), tar (= 1.35+dfsg-2), tex-common (= 6.18), texlive-base (= 2023.20231207-1), texlive-binaries (= 2023.20230311.66589-8build1), texlive-fonts-recommended (= 2023.20231207-1), texlive-lang-french (= 2023.20231207-1), texlive-latex-base (= 2023.20231207-1), texlive-latex-extra (= 2023.20231207-3), texlive-latex-recommended (= 2023.20231207-1), texlive-pictures (= 2023.20231207-1), tzdata (= 2023d-1ubuntu2), ucf (= 3.0043+nmu1), util-linux (= 2.39.2-6ubuntu1), x11-common (= 1:7.7+23ubuntu2), xdg-utils (= 1.1.3-4.1ubuntu3), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xz-utils (= 5.4.5-0.3), zlib1g (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1704891797" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ altree_1.3.2-2build1_armhf.deb ------------------------------ new Debian package, version 2.0. size 338080 bytes: control archive=1682 bytes. 926 bytes, 17 lines control 2796 bytes, 34 lines md5sums Package: altree Version: 1.3.2-2build1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 534 Depends: libblas3 | libblas.so.3, libc6 (>= 2.38), libgsl27 (>= 2.7.1), perl (>= 5.38.2-2), perlapi-5.38.2, libmath-tamuanova-perl Recommends: libopenblas0 | libblis4 | libmkl-rt | libblas.so.3 Suggests: altree-examples Section: science Priority: optional Homepage: https://gitlab.inria.fr/NGS/ALTree Description: program to perform phylogeny-based association and localization analysis ALTree was designed to perform association detection and localization of susceptibility sites using haplotype phylogenetic trees: first, it allows the detection of an association between a candidate gene and a disease, and second, it enables to make hypothesis about the susceptibility loci. drwxr-xr-x root/root 0 2024-01-10 13:03 ./ drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/ drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/bin/ -rwxr-xr-x root/root 55855 2024-01-10 13:03 ./usr/bin/altree -rwxr-xr-x root/root 15365 2024-01-10 13:03 ./usr/bin/altree-add-S -rwxr-xr-x root/root 22801 2024-01-10 13:03 ./usr/bin/altree-convert drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/lib/ drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/lib/arm-linux-gnueabihf/perl5/ drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/ -rw-r--r-- root/root 342 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Base.pm -rw-r--r-- root/root 3081 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/CUtils.pm -rw-r--r-- root/root 2897 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Chi2.pm -rw-r--r-- root/root 2817 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Foret.pm -rw-r--r-- root/root 2026 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Import.pm -rw-r--r-- root/root 24521 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Input.pm -rw-r--r-- root/root 2371 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Nanova.pm -rw-r--r-- root/root 5965 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Node.pm -rw-r--r-- root/root 1455 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Sens.pm -rw-r--r-- root/root 1895 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Site.pm -rw-r--r-- root/root 1044 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteCollection.pm -rw-r--r-- root/root 3569 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SitePerForet.pm -rw-r--r-- root/root 876 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SitePerTree.pm -rw-r--r-- root/root 1287 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteSens.pm -rw-r--r-- root/root 905 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteSensPerForet.pm -rw-r--r-- root/root 2781 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteSensPerTree.pm -rw-r--r-- root/root 4804 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Tree.pm -rw-r--r-- root/root 1467 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Utils.pm -rw-r--r-- root/root 9288 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/to_rewrite.pm drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/ drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/CUtils/ -rw-r--r-- root/root 48476 2024-01-10 13:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/CUtils/CUtils.so -rw-r--r-- root/root 95 2024-01-10 13:03 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/CUtils/autosplit.ix drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/share/ drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/share/doc-base/ -rw-r--r-- root/root 513 2023-11-29 10:13 ./usr/share/doc-base/altree.altree drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/share/doc/altree/ -rw-r--r-- root/root 1441 2021-09-17 14:32 ./usr/share/doc/altree/README -rw-r--r-- root/root 321 2023-11-29 10:13 ./usr/share/doc/altree/README.test -rw-r--r-- root/root 1025 2024-01-10 13:03 ./usr/share/doc/altree/changelog.Debian.gz -rw-r--r-- root/root 1223 2023-11-29 10:13 ./usr/share/doc/altree/copyright -rw-r--r-- root/root 281038 2024-01-10 13:03 ./usr/share/doc/altree/manual.pdf drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/share/man/ drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/share/man/man1/ -rw-r--r-- root/root 1708 2024-01-10 13:03 ./usr/share/man/man1/altree-add-S.1p.gz -rw-r--r-- root/root 1790 2024-01-10 13:03 ./usr/share/man/man1/altree-convert.1p.gz -rw-r--r-- root/root 2811 2024-01-10 13:03 ./usr/share/man/man1/altree.1p.gz drwxr-xr-x root/root 0 2024-01-10 13:03 ./usr/share/man/man3/ -rw-r--r-- root/root 1565 2024-01-10 13:03 ./usr/share/man/man3/ALTree::CUtils.3pm.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 17392 Build-Time: 22 Distribution: noble-proposed Host Architecture: armhf Install-Time: 177 Job: altree_1.3.2-2build1.dsc Machine Architecture: arm64 Package: altree Package-Time: 201 Source-Version: 1.3.2-2build1 Space: 17392 Status: successful Version: 1.3.2-2build1 -------------------------------------------------------------------------------- Finished at 2024-01-10T19:03:59Z Build needed 00:03:21, 17392k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27628990 Scanning for processes to kill in build PACKAGEBUILD-27628990