https://launchpad.net/ubuntu/+source/altree/1.3.2-2build3/+build/27997824 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-023 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:54:37 UTC 2024 aarch64 Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu20.04.1 python3-lpbuildd_236~650~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 1 Apr 08:57:39 ntpdate[1846]: adjust time server 10.211.37.1 offset -0.004109 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27997824 --image-type chroot /home/buildd/filecache-default/59612f0fc5bae33f6226b6e60c2e882b82c04bd0 Creating target for build PACKAGEBUILD-27997824 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27997824 Starting target for build PACKAGEBUILD-27997824 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27997824 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27997824 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27997824 Updating target for build PACKAGEBUILD-27997824 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main armhf Packages [1336 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe armhf Packages [14.3 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6118 kB] Get:9 http://ftpmaster.internal/ubuntu noble-updates/main armhf Packages [666 kB] Get:10 http://ftpmaster.internal/ubuntu noble-updates/main Translation-en [242 kB] Get:11 http://ftpmaster.internal/ubuntu noble-updates/universe armhf Packages [4423 kB] Get:12 http://ftpmaster.internal/ubuntu noble-updates/universe Translation-en [1693 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [554 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [234 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [2321 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [1259 kB] Fetched 34.2 MB in 9s (3608 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libperl5.36* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf gcc-14-base gcc-arm-linux-gnueabihf libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-arm-linux-gnueabihf binutils-common bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgssapi-krb5-2 libidn2-0 libip4tc2 libjansson4 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblzma5 libmd0 libmount1 libncursesw6 libnsl-dev libnsl2 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base pinentry-curses procps psmisc readline-common sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 154 upgraded, 23 newly installed, 15 to remove and 0 not upgraded. Need to get 96.8 MB of archives. After this operation, 24.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnsl-dev armhf 1.3.0-3build3 [66.2 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt-dev armhf 1:4.4.36-4 [136 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc6-dev armhf 2.39-0ubuntu8 [1352 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc-dev-bin armhf 2.39-0ubuntu8 [19.1 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-dev armhf 1.3.4+ds-1.1build1 [184 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf libnss-nisplus armhf 1.3-5build1 [20.1 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnsl2 armhf 1.3.0-3build3 [36.5 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgssapi-krb5-2 armhf 1.20.1-6ubuntu2 [119 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5-3 armhf 1.20.1-6ubuntu2 [321 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libk5crypto3 armhf 1.20.1-6ubuntu2 [78.6 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5support0 armhf 1.20.1-6ubuntu2 [31.4 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libacl1 armhf 2.3.2-1 [15.1 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapparmor1 armhf 4.0.0-beta3-0ubuntu3 [45.1 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcap-ng0 armhf 0.8.4-2build2 [13.6 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit1 armhf 1:3.1.2-2.1build1 [44.4 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblkid1 armhf 2.39.3-9ubuntu4 [160 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main armhf libcap2 armhf 1:2.66-5ubuntu1 [25.8 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt1 armhf 1:4.4.36-4 [104 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error-l10n all 1.47-3build1 [8024 B] Get:22 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error0 armhf 1.47-3build1 [61.6 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main armhf libgcrypt20 armhf 1.10.3-2 [454 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma5 armhf 5.6.1+really5.4.5-1build1 [112 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main armhf libzstd1 armhf 1.5.5+dfsg2-2 [265 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkmod2 armhf 31+20240202-2ubuntu5 [45.0 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-8-0 armhf 10.42-4ubuntu1 [198 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libselinux1 armhf 3.5-2ubuntu2 [70.9 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmount1 armhf 2.39.3-9ubuntu4 [171 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-iconv-perl armhf 1.7-8build3 [12.7 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-charwidth-perl armhf 0.04-11build3 [8992 B] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-modules-5.38 all 5.38.2-3.2build1 [3110 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-6build1 [661 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm6t64 armhf 1.23-5.1build1 [30.3 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm-compat4t64 armhf 1.23-5.1build1 [6216 B] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libperl5.38t64 armhf 5.38.2-3.2build1 [4109 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl armhf 5.38.2-3.2build1 [231 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-base armhf 5.38.2-3.2build1 [1671 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblocale-gettext-perl armhf 1.07-6ubuntu5 [15.1 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc6 armhf 2.39-0ubuntu8 [2828 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc-bin armhf 2.39-0ubuntu8 [530 kB] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssl armhf 3.0.13-0ubuntu3 [974 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd-shared armhf 255.4-1ubuntu6 [2010 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu3 [238 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssl3t64 armhf 3.0.13-0ubuntu3 [1558 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-dev all 255.4-1ubuntu6 [104 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-sysv armhf 255.4-1ubuntu6 [11.9 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd armhf 255.4-1ubuntu6 [3502 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd0 armhf 255.4-1ubuntu6 [406 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu4 [47.1 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules armhf 1.5.3-5ubuntu4 [260 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main armhf libapt-pkg6.0t64 armhf 2.7.14 [986 kB] Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnettle8t64 armhf 3.9.1-2.2build1 [187 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libhogweed6t64 armhf 3.9.1-2.2build1 [187 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main armhf libp11-kit0 armhf 0.25.3-4ubuntu1 [258 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main armhf libunistring5 armhf 1.1-2 [512 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgnutls30t64 armhf 3.8.3-1.1ubuntu3 [947 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main armhf apt armhf 2.7.14 [1368 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main armhf apt-utils armhf 2.7.14 [210 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bzip2 armhf 1.0.8-5.1 [33.5 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbz2-1.0 armhf 1.0.8-5.1 [31.1 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g armhf 1:1.3.dfsg-3.1ubuntu2 [49.2 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main armhf debconf-i18n all 1.5.86 [205 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main armhf debconf all 1.5.86 [124 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam0g armhf 1.5.3-5ubuntu4 [62.0 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libseccomp2 armhf 2.5.5-1ubuntu3 [49.5 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main armhf libargon2-1 armhf 0~20190702+dfsg-4 [22.3 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudev1 armhf 255.4-1ubuntu6 [166 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu3 [135 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuuid1 armhf 2.39.3-9ubuntu4 [34.6 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfdisk1 armhf 2.39.3-9ubuntu4 [196 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mount armhf 2.39.3-9ubuntu4 [134 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu3 [21.9 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main armhf libkeyutils1 armhf 1.6.3-3 [8120 B] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc3t64 armhf 1.3.4+ds-1.1build1 [73.3 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main armhf linux-libc-dev armhf 6.8.0-20.20 [1555 kB] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-14-base armhf 14-20240330-1ubuntu2 [47.4 kB] Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-s1 armhf 14-20240330-1ubuntu2 [41.5 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main armhf base-files armhf 13ubuntu9 [73.4 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main armhf debianutils armhf 5.17build1 [89.0 kB] Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bash armhf 5.2.21-2ubuntu4 [668 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdutils armhf 1:2.39.3-9ubuntu4 [101 kB] Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main armhf coreutils armhf 9.4-3ubuntu5 [1280 kB] Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++6 armhf 14-20240330-1ubuntu2 [714 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main armhf libxxhash0 armhf 0.8.2-2 [31.3 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main armhf libffi8 armhf 3.4.6-1 [21.0 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main armhf libidn2-0 armhf 2.3.7-2 [96.1 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdebconfclient0 armhf 0.271ubuntu3 [10.9 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main armhf base-passwd armhf 3.6.3 [51.0 kB] Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsqlite3-0 armhf 3.45.1-1ubuntu2 [590 kB] Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg armhf 2.4.4-2ubuntu16 [524 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-agent armhf 2.4.4-2ubuntu16 [235 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgconf armhf 2.4.4-2ubuntu16 [115 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main armhf readline-common all 8.2-4build1 [56.5 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main armhf libncursesw6 armhf 6.4+20240113-1ubuntu1 [118 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main armhf libtinfo6 armhf 6.4+20240113-1ubuntu1 [90.5 kB] Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreadline8t64 armhf 8.2-4build1 [129 kB] Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main armhf pinentry-curses armhf 1.2.1-3ubuntu5 [36.7 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main armhf init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnpth0t64 armhf 1.6-3.1build1 [6998 B] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgv armhf 2.4.4-2ubuntu16 [224 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main armhf ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main armhf tar armhf 1.35+dfsg-3 [236 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg armhf 1.22.6ubuntu6 [1230 kB] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dash armhf 0.5.12-6ubuntu5 [80.8 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main armhf diffutils armhf 1:3.10-1 [167 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main armhf grep armhf 3.11-4 [166 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main armhf gzip armhf 1.12-1ubuntu2 [95.8 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main armhf hostname armhf 3.23+nmu2ubuntu1 [10.3 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main armhf login armhf 1:4.13+dfsg1-4ubuntu1 [200 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main armhf ncurses-bin armhf 6.4+20240113-1ubuntu1 [178 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main armhf sed armhf 4.9-2 [198 kB] Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main armhf util-linux armhf 2.39.3-9ubuntu4 [1216 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main armhf ncurses-base all 6.4+20240113-1ubuntu1 [25.4 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main armhf sysvinit-utils armhf 3.08-6ubuntu2 [33.7 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu3 [21.9 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu3 [201 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu3 [571 kB] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main armhf optipng armhf 0.7.8+ds-1build2 [109 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng16-16t64 armhf 1.6.43-5build1 [166 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main armhf init armhf 1.66ubuntu1 [6186 B] Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsmartcols1 armhf 2.39.3-9ubuntu4 [117 kB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main armhf uuid-runtime armhf 2.39.3-9ubuntu4 [41.7 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main armhf libattr1 armhf 1:2.5.2-1 [10.3 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main armhf libmd0 armhf 1.1.0-2 [23.1 kB] Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-runtime all 1.5.3-5ubuntu4 [40.8 kB] Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage-common all 3.5-1build5 [10.1 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main armhf libsepol2 armhf 3.5-2 [262 kB] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage2 armhf 3.5-1build5 [84.5 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main armhf passwd armhf 1:4.13+dfsg1-4ubuntu1 [817 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libproc2-0 armhf 2:4.0.4-4ubuntu3 [49.0 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu3 [14.7 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main armhf mawk armhf 1.3.4.20240123-1 [115 kB] Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main armhf procps armhf 2:4.0.4-4ubuntu3 [700 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main armhf sensible-utils all 0.0.22 [22.5 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main armhf ca-certificates all 20240203 [159 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main armhf krb5-locales all 1.20.1-6ubuntu1 [13.8 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main armhf tzdata all 2024a-1ubuntu1 [273 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main armhf bash-completion all 1:2.11-8 [180 kB] Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdextrautils armhf 2.39.3-9ubuntu4 [78.7 kB] Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgpm2 armhf 1.20.7-11 [13.6 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main armhf libip4tc2 armhf 1.8.10-3ubuntu1 [21.2 kB] Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjansson4 armhf 2.14-2build2 [28.2 kB] Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main armhf psmisc armhf 23.7-1build1 [176 kB] Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xz-utils armhf 5.6.1+really5.4.5-1build1 [267 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main armhf libctf0 armhf 2.42-4ubuntu2 [87.7 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main armhf libctf-nobfd0 armhf 2.42-4ubuntu2 [88.0 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main armhf binutils-arm-linux-gnueabihf armhf 2.42-4ubuntu2 [2925 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main armhf libbinutils armhf 2.42-4ubuntu2 [460 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main armhf binutils armhf 2.42-4ubuntu2 [3072 B] Get:151 http://ftpmaster.internal/ubuntu noble/main armhf binutils-common armhf 2.42-4ubuntu2 [217 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main armhf libsframe1 armhf 2.42-4ubuntu2 [13.1 kB] Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libubsan1 armhf 14-20240330-1ubuntu2 [1153 kB] Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgomp1 armhf 14-20240330-1ubuntu2 [125 kB] Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libatomic1 armhf 14-20240330-1ubuntu2 [7846 B] Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libasan8 armhf 14-20240330-1ubuntu2 [2940 kB] Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++-13 armhf 13.2.0-23ubuntu3 [14.5 kB] Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13 armhf 13.2.0-23ubuntu3 [450 kB] Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++-13-dev armhf 13.2.0-23ubuntu3 [2455 kB] Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-13-dev armhf 13.2.0-23ubuntu3 [899 kB] Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcc1-0 armhf 14-20240330-1ubuntu2 [39.1 kB] Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp-13 armhf 13.2.0-23ubuntu3 [1034 B] Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-base armhf 13.2.0-23ubuntu3 [48.6 kB] Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu3 [16.8 MB] Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu3 [9939 kB] Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu3 [8759 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main armhf g++ armhf 4:13.2.0-7ubuntu1 [1090 B] Get:168 http://ftpmaster.internal/ubuntu noble/main armhf gcc armhf 4:13.2.0-7ubuntu1 [5022 B] Get:169 http://ftpmaster.internal/ubuntu noble/main armhf cpp armhf 4:13.2.0-7ubuntu1 [22.4 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main armhf cpp-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [5320 B] Get:171 http://ftpmaster.internal/ubuntu noble/main armhf gcc-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1220 B] Get:172 http://ftpmaster.internal/ubuntu noble/main armhf g++-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [966 B] Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main armhf lto-disabled-list all 47 [12.4 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main armhf libfakeroot armhf 1.33-1 [28.7 kB] Get:177 http://ftpmaster.internal/ubuntu noble/main armhf fakeroot armhf 1.33-1 [68.6 kB] Preconfiguring packages ... 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Installing new version of config file /etc/security/namespace.init ... dpkg: libnettle8:armhf: dependency problems, but removing anyway as you requested: libhogweed6:armhf depends on libnettle8. libgnutls30:armhf depends on libnettle8 (>= 3.7~). (Reading database ... 14943 files and directories currently installed.) Removing libnettle8:armhf (3.9.1-2) ... dpkg: libapt-pkg6.0:armhf: dependency problems, but removing anyway as you requested: apt-utils depends on libapt-pkg6.0 (>= 2.7.3). apt depends on libapt-pkg6.0 (>= 2.7.3). Removing libapt-pkg6.0:armhf (2.7.3) ... dpkg: libgnutls30:armhf: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.7.5). Removing libgnutls30:armhf (3.8.1-4ubuntu1) ... Selecting previously unselected package libapt-pkg6.0t64:armhf. (Reading database ... 14877 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.7.14_armhf.deb ... Unpacking libapt-pkg6.0t64:armhf (2.7.14) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.1build1) ... Preparing to unpack .../5-linux-libc-dev_6.8.0-20.20_armhf.deb ... Unpacking linux-libc-dev:armhf (6.8.0-20.20) over (6.5.0-9.9) ... Selecting previously unselected package gcc-14-base:armhf. Preparing to unpack .../6-gcc-14-base_14-20240330-1ubuntu2_armhf.deb ... Unpacking gcc-14-base:armhf (14-20240330-1ubuntu2) ... Setting up gcc-14-base:armhf (14-20240330-1ubuntu2) ... (Reading database ... 14977 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14-20240330-1ubuntu2_armhf.deb ... Unpacking libgcc-s1:armhf (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Setting up libgcc-s1:armhf (14-20240330-1ubuntu2) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4build1) ... Preparing to unpack .../pinentry-curses_1.2.1-3ubuntu5_armhf.deb ... Unpacking pinentry-curses (1.2.1-3ubuntu5) over (1.2.1-1ubuntu1) ... Preparing to unpack .../init-system-helpers_1.66ubuntu1_all.deb ... Unpacking init-system-helpers (1.66ubuntu1) over (1.65.2ubuntu1) ... Setting up init-system-helpers (1.66ubuntu1) ... 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Setting up krb5-locales (1.20.1-6ubuntu1) ... Setting up libgomp1:armhf (14-20240330-1ubuntu2) ... Setting up bzip2 (1.0.8-5.1) ... Setting up libsframe1:armhf (2.42-4ubuntu2) ... Setting up libfakeroot:armhf (1.33-1) ... Setting up libjansson4:armhf (2.14-2build2) ... Setting up libkrb5support0:armhf (1.20.1-6ubuntu2) ... Setting up tzdata (2024a-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Apr 1 08:58:45 UTC 2024. Universal Time is now: Mon Apr 1 08:58:45 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1) ... Setting up gcc-13-base:armhf (13.2.0-23ubuntu3) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.6.1+really5.4.5-1build1) ... Setting up perl-modules-5.38 (5.38.2-3.2build1) ... Setting up libproc2-0:armhf (2:4.0.4-4ubuntu3) ... Setting up libpng16-16t64:armhf (1.6.43-5build1) ... Setting up libatomic1:armhf (14-20240330-1ubuntu2) ... Setting up libss2:armhf (1.47.0-2.4~exp1ubuntu3) ... Setting up libncursesw6:armhf (6.4+20240113-1ubuntu1) ... Setting up libk5crypto3:armhf (1.20.1-6ubuntu2) ... Setting up logsave (1.47.0-2.4~exp1ubuntu3) ... Setting up libdb5.3t64:armhf (5.3.28+dfsg2-6build1) ... Setting up libubsan1:armhf (14-20240330-1ubuntu2) ... Setting up sensible-utils (0.0.22) ... Setting up uuid-runtime (2.39.3-9ubuntu4) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libcrypt-dev:armhf (1:4.4.36-4) ... Setting up libasan8:armhf (14-20240330-1ubuntu2) ... Setting up procps (2:4.0.4-4ubuntu3) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1) ... Setting up libkrb5-3:armhf (1.20.1-6ubuntu2) ... Setting up libperl5.38t64:armhf (5.38.2-3.2build1) ... Setting up libbinutils:armhf (2.42-4ubuntu2) ... Setting up libc-dev-bin (2.39-0ubuntu8) ... Setting up openssl (3.0.13-0ubuntu3) ... Setting up libgpg-error-l10n (1.47-3build1) ... Setting up readline-common (8.2-4build1) ... Setting up libcc1-0:armhf (14-20240330-1ubuntu2) ... Setting up liblocale-gettext-perl (1.07-6ubuntu5) ... Setting up libctf0:armhf (2.42-4ubuntu2) ... Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up apt-utils (2.7.14) ... Setting up cpp-13-arm-linux-gnueabihf (13.2.0-23ubuntu3) ... Setting up debconf-i18n (1.5.86) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu3) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2build1) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up libgssapi-krb5-2:armhf (1.20.1-6ubuntu2) ... Setting up libdpkg-perl (1.22.6ubuntu6) ... Setting up libreadline8t64:armhf (8.2-4build1) ... Setting up libgcc-13-dev:armhf (13.2.0-23ubuntu3) ... Setting up gpgconf (2.4.4-2ubuntu16) ... Setting up libc6-dev:armhf (2.39-0ubuntu8) ... Setting up binutils-arm-linux-gnueabihf (2.42-4ubuntu2) ... Setting up gpg (2.4.4-2ubuntu16) ... Setting up cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... Setting up libstdc++-13-dev:armhf (13.2.0-23ubuntu3) ... Setting up gpg-agent (2.4.4-2ubuntu16) ... Setting up cpp-13 (13.2.0-23ubuntu3) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.1build1) ... Setting up binutils (2.42-4ubuntu2) ... Setting up gcc-13-arm-linux-gnueabihf (13.2.0-23ubuntu3) ... Setting up dpkg-dev (1.22.6ubuntu6) ... Setting up libtirpc-dev:armhf (1.3.4+ds-1.1build1) ... Setting up gcc-13 (13.2.0-23ubuntu3) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up libnsl2:armhf (1.3.0-3build3) ... Setting up gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... Setting up g++-13-arm-linux-gnueabihf (13.2.0-23ubuntu3) ... Setting up g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... Setting up g++-13 (13.2.0-23ubuntu3) ... Setting up libnss-nisplus:armhf (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Setting up libnsl-dev:armhf (1.3.0-3build3) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for debianutils (5.17build1) ... (Reading database ... 15022 files and directories currently installed.) Purging configuration files for libssl3:armhf (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27997824 armhf noble-proposed -c chroot:build-PACKAGEBUILD-27997824 --arch=armhf --dist=noble-proposed --nolog altree_1.3.2-2build3.dsc Initiating build PACKAGEBUILD-27997824 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:54:37 UTC 2024 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-023.buildd +==============================================================================+ | altree 1.3.2-2build3 (armhf) Mon, 01 Apr 2024 08:58:56 +0000 | +==============================================================================+ Package: altree Version: 1.3.2-2build3 Source Version: 1.3.2-2build3 Distribution: noble-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27997824/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/altree-DSTThu/resolver-zTKBow' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- altree_1.3.2-2build3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/altree-DSTThu/altree-1.3.2' with '<>' I: NOTICE: Log filtering will replace 'build/altree-DSTThu' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev, build-essential, fakeroot Filtered Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [477 B] Get:5 copy:/<>/apt_archive ./ Packages [560 B] Fetched 1994 B in 0s (68.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz fig2dev file fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext gettext-base ghostscript groff-base intltool-debian latex-make libapache-pom-java libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libbrotli1 libbsd0 libcairo2 libcommons-logging-java libcommons-parent-java libcups2t64 libdbus-1-3 libdebhelper-perl libdeflate0 libdw1t64 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0t64 libgraphite2-3 libgs-common libgs10 libgs10-common libgsl-dev libgsl27 libgslcblas0 libharfbuzz0b libice6 libicu74 libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblerc4 libmagic-mgc libmagic1t64 libmath-tamuanova-perl libnetpbm11t64 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpotrace0 libptexenc1 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libsharpyuv0 libsigsegv2 libsm6 libsub-override-perl libsynctex2 libtamuanova-0.2 libteckit0 libtest-deep-perl libtexlua53-5 libtiff6 libtool libuchardet0 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6t64 libzzip-0-13t64 m4 man-db media-types netbase netpbm po-debconf poppler-data preview-latex-style python3 python3-minimal python3.12 python3.12-minimal t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-lang-french texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils xfonts-encodings xfonts-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make xfig fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gawk-doc gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java cups-common low-memory-monitor gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python3-doc python3-tk python3-venv python3.12-venv python3.12-doc binfmt-support perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex python3-pygments icc-profiles libfile-which-perl texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex Recommended packages: curl | wget | lynx inkscape dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback libltdl-dev libmail-sendmail-perl lmodern dvisvgm tex-gyre tipa default-jre libspreadsheet-parseexcel-perl texlive-plain-generic ruby tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz fig2dev file fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext gettext-base ghostscript groff-base intltool-debian latex-make libapache-pom-java libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libbrotli1 libbsd0 libcairo2 libcommons-logging-java libcommons-parent-java libcups2t64 libdbus-1-3 libdebhelper-perl libdeflate0 libdw1t64 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0t64 libgraphite2-3 libgs-common libgs10 libgs10-common libgsl-dev libgsl27 libgslcblas0 libharfbuzz0b libice6 libicu74 libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblerc4 libmagic-mgc libmagic1t64 libmath-tamuanova-perl libnetpbm11t64 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpotrace0 libptexenc1 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libsharpyuv0 libsigsegv2 libsm6 libsub-override-perl libsynctex2 libtamuanova-0.2 libteckit0 libtest-deep-perl libtexlua53-5 libtiff6 libtool libuchardet0 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6t64 libzzip-0-13t64 m4 man-db media-types netbase netpbm po-debconf poppler-data preview-latex-style python3 python3-minimal python3.12 python3.12-minimal sbuild-build-depends-main-dummy t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-lang-french texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils xfonts-encodings xfonts-utils 0 upgraded, 136 newly installed, 0 to remove and 0 not upgraded. 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Fetched 238 MB in 11s (22.3 MB/s) Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... 15022 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.2-4build4_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.2-4build4) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.1-2build1_armhf.deb ... Unpacking libexpat1:armhf (2.6.1-2build1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.2-4build4_armhf.deb ... Unpacking python3.12-minimal (3.12.2-4build4) ... Setting up libpython3.12-minimal:armhf (3.12.2-4build4) ... Setting up libexpat1:armhf (2.6.1-2build1) ... Setting up python3.12-minimal (3.12.2-4build4) ... Selecting previously unselected package python3-minimal. (Reading database ... 15340 files and directories currently installed.) 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Setting up liblerc4:armhf (4.0.0+ds-4ubuntu1) ... Setting up libgslcblas0:armhf (2.7.1+dfsg-6ubuntu1) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libmagic-mgc (1:5.45-3build1) ... Setting up gawk (1:5.2.1-2build3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libijs-0.35:armhf (0.35-15.1) ... Setting up libdebhelper-perl (13.14.1ubuntu5) ... Setting up libgs-common (10.02.1~dfsg1-0ubuntu6) ... Setting up libbrotli1:armhf (1.1.0-2build1) ... Setting up libfontbox-java (1:1.8.16-5) ... Setting up libmagic1t64:armhf (1:5.45-3build1) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libdeflate0:armhf (1.19-1) ... Setting up gettext-base (0.21-14ubuntu1) ... Setting up libgsl27:armhf (2.7.1+dfsg-6ubuntu1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3build1) ... Setting up libjbig0:armhf (2.1-6.1ubuntu1) ... Setting up libnetpbm11t64:armhf (2:11.05.02-1.1build1) ... Setting up libelf1t64:armhf (0.190-1.1build3) ... Setting up poppler-data (0.4.12-1) ... Setting up libdw1t64:armhf (0.190-1.1build3) ... Setting up libfontenc1:armhf (1:1.1.8-1build1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:armhf (2.80.0-6build1) ... No schema files found: doing nothing. Setting up libblas3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libzzip-0-13t64:armhf (0.13.72+dfsg.1-1.2) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1build3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjbig2dec0:armhf (0.20-1build3) ... Setting up libteckit0:armhf (2.5.12+ds1-1) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:armhf (0.8-13ubuntu5) ... Setting up libdbus-1-3:armhf (1.14.10-4ubuntu3) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up t1utils (1.41-4build2) ... Setting up libtexlua53-5:armhf (2023.20230311.66589-9build3) ... Setting up libidn12:armhf (1.42-1) ... Setting up autopoint (0.21-14ubuntu1) ... Setting up ucf (3.0043+nmu1) ... Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ... Setting up libkpathsea6:armhf (2023.20230311.66589-9build3) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:armhf (1.3.2-0.4build2) ... Setting up libicu74:armhf (74.2-1ubuntu1) ... Setting up libtamuanova-0.2 (0.2-5build1) ... Setting up dwz (0.15-1build6) ... Setting up libuchardet0:armhf (0.0.8-1) ... Setting up debugedit (1:5.0-5build1) ... Setting up fonts-lmodern (2.005-1) ... Setting up libopenjp2-7:armhf (2.5.0-2build2) ... Setting up libsub-override-perl (0.10-1) ... Setting up libharfbuzz0b:armhf (8.3.0-2build2) ... Setting up netbase (6.4) ... Setting up libbsd0:armhf (0.12.1-1build1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu3) ... Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libblas-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libsynctex2:armhf (2023.20230311.66589-9build3) ... Setting up libpotrace0:armhf (1.16-2) ... Setting up libjpeg8:armhf (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libpaper1:armhf (1.1.29) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-1build2) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu5) ... Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-14ubuntu1) ... 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Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu2) ... Setting up libx11-6:armhf (2:1.8.7-1) ... Setting up libsm6:armhf (2:1.2.3-1build2) ... Setting up libavahi-client3:armhf (0.8-13ubuntu5) ... Setting up libpython3-stdlib:armhf (3.12.2-0ubuntu2) ... Setting up libxpm4:armhf (1:3.5.17-1build2) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up preview-latex-style (13.2-1) ... Setting up libxext6:armhf (2:1.3.4-1build1) ... Setting up python3 (3.12.2-0ubuntu2) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up man-db (2.12.0-4build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libxt6t64:armhf (1:1.2.1-1.2build1) ... Setting up latex-make (2.4.3-1) ... Setting up netpbm (2:11.05.02-1.1build1) ... Setting up libcups2t64:armhf (2.4.7-1.2ubuntu3) ... Setting up libgs10-common (10.02.1~dfsg1-0ubuntu6) ... Setting up libxmu6:armhf (2:1.1.3-3build2) ... Setting up libxi6:armhf (2:1.8.1-1) ... Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up libxaw7:armhf (2:1.0.14-1build2) ... Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... Setting up libgs10:armhf (10.02.1~dfsg1-0ubuntu6) ... Setting up ghostscript (10.02.1~dfsg1-0ubuntu6) ... Setting up fig2dev (1:3.2.9-3build2) ... Setting up libcairo2:armhf (1.18.0-3) ... Setting up texlive-binaries (2023.20230311.66589-9build3) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2023.20240207-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-lang-french (2023.20240207-1) ... Setting up texlive-latex-base (2023.20240207-1) ... Setting up texlive-latex-recommended (2023.20240207-1) ... Setting up texlive-pictures (2023.20240207-1) ... Setting up texlive-fonts-recommended (2023.20240207-1) ... Setting up texlive-latex-extra (2023.20240207-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (255.4-1ubuntu6) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:54:37 UTC 2024 arm64 (armv7l) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu3 gcc-13_13.2.0-23ubuntu3 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240330-1ubuntu2 linux-libc-dev_6.8.0-20.20 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.14 apt-utils_2.7.14 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu1 autotools-dev_20220109.1 base-files_13ubuntu9 base-passwd_3.6.3 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-arm-linux-gnueabihf_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu4 bsdutils_1:2.39.3-9ubuntu4 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3ubuntu5 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-23ubuntu3 cpp-13-arm-linux-gnueabihf_13.2.0-23ubuntu3 cpp-arm-linux-gnueabihf_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu5 debconf_1.5.86 debconf-i18n_1.5.86 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu3 fakeroot_1.33-1 fig2dev_1:3.2.9-3build2 file_1:5.45-3build1 findutils_4.9.0-5 fontconfig-config_2.15.0-1.1ubuntu2 fonts-lmodern_2.005-1 fonts-urw-base35_20200910-8 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-23ubuntu3 g++-13-arm-linux-gnueabihf_13.2.0-23ubuntu3 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libavahi-common-data_0.8-13ubuntu5 libavahi-common3_0.8-13ubuntu5 libbinutils_2.42-4ubuntu2 libblas-dev_3.12.0-3 libblas3_3.12.0-3 libblkid1_2.39.3-9ubuntu4 libbrotli1_1.1.0-2build1 libbsd0_0.12.1-1build1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-0ubuntu8 libc-dev-bin_2.39-0ubuntu8 libc6_2.39-0ubuntu8 libc6-dev_2.39-0ubuntu8 libcairo2_1.18.0-3 libcap-ng0_0.8.4-2build2 libcap2_1:2.66-5ubuntu1 libcc1-0_14-20240330-1ubuntu2 libcom-err2_1.47.0-2.4~exp1ubuntu3 libcommons-logging-java_1.3.0-1ubuntu1 libcommons-parent-java_56-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libcryptsetup12_2:2.7.0-1ubuntu3 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libcups2t64_2.4.7-1.2ubuntu3 libdb5.3t64_5.3.28+dfsg2-6build1 libdbus-1-3_1.14.10-4ubuntu3 libdebconfclient0_0.271ubuntu3 libdebhelper-perl_13.14.1ubuntu5 libdeflate0_1.19-1 libdevmapper1.02.1_2:1.02.185-3ubuntu3 libdpkg-perl_1.22.6ubuntu6 libdw1t64_0.190-1.1build3 libelf1t64_0.190-1.1build3 libexpat1_2.6.1-2build1 libext2fs2t64_1.47.0-2.4~exp1ubuntu3 libfakeroot_1.33-1 libfdisk1_2.39.3-9ubuntu4 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.13.1-1 libfontbox-java_1:1.8.16-5 libfontconfig1_2.15.0-1.1ubuntu2 libfontenc1_1:1.1.8-1build1 libfreetype6_2.13.2+dfsg-1build3 libgcc-13-dev_13.2.0-23ubuntu3 libgcc-s1_14-20240330-1ubuntu2 libgcrypt20_1.10.3-2 libgdbm-compat4t64_1.23-5.1build1 libgdbm6t64_1.23-5.1build1 libglib2.0-0t64_2.80.0-6build1 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30t64_3.8.3-1.1ubuntu3 libgomp1_14-20240330-1ubuntu2 libgpg-error-l10n_1.47-3build1 libgpg-error0_1.47-3build1 libgpm2_1.20.7-11 libgraphite2-3_1.3.14-2 libgs-common_10.02.1~dfsg1-0ubuntu6 libgs10_10.02.1~dfsg1-0ubuntu6 libgs10-common_10.02.1~dfsg1-0ubuntu6 libgsl-dev_2.7.1+dfsg-6ubuntu1 libgsl27_2.7.1+dfsg-6ubuntu1 libgslcblas0_2.7.1+dfsg-6ubuntu1 libgssapi-krb5-2_1.20.1-6ubuntu2 libharfbuzz0b_8.3.0-2build2 libhogweed6t64_3.9.1-2.2build1 libice6_2:1.0.10-1build2 libicu74_74.2-1ubuntu1 libidn12_1.42-1 libidn2-0_2.3.7-2 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: altree Binary: altree, altree-examples Architecture: any all Version: 1.3.2-2build3 Maintainer: Ubuntu Developers Uploaders: Charles Plessy , Vincent Danjean , Andreas Tille Homepage: https://gitlab.inria.fr/NGS/ALTree Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/altree Vcs-Git: https://salsa.debian.org/med-team/altree.git Testsuite: autopkgtest Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev Package-List: altree deb science optional arch=any altree-examples deb science optional arch=all Checksums-Sha1: 095d136e5ffbeeb2f0e0da550a8a06e8ff5ca7f0 610823 altree_1.3.2.orig.tar.gz b800b7a5ecbbd560d21bc9ab87432e2b124fa91b 7376 altree_1.3.2-2build3.debian.tar.xz Checksums-Sha256: f9d5beda91aaab219e1397b4c19e0649788a871c8c29fa1e8343a53c5f710b8e 610823 altree_1.3.2.orig.tar.gz 0b5d865de21fcb604cb10c5538c58cc1949e6675ec3c1535b126b0867755649f 7376 altree_1.3.2-2build3.debian.tar.xz Files: fd17066d7f6bc07baacf526ff3ee1c3b 610823 altree_1.3.2.orig.tar.gz c2fa1c51088db666b49d03ced8f43713 7376 altree_1.3.2-2build3.debian.tar.xz Original-Maintainer: Debian Med Packaging Team -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEoIn7Nqr72tWswTJQafeQFxohCYQFAmYKQcgACgkQafeQFxoh CYSTiBAAhCVapIWywjOAu2DlCC5qcy+lY09M4RrZuEz5ubZHdF9c3MwPDCIZL0ZP tzK/0ScGoyzxf9vr1uywbrpf2iBlAqCfn6gn02MLeiuLtjMKk7HSn0Ea6vOuEqCf BY0mtc1CTppKVB9vhr8lN2lbJLM4i2lk+Ijg0y07D+4AZHABtk2PXUjcl/Mxky3j wLYATgn1m81XkNv18qNZXEgSx6fmyEot7y0ddxr/0DXxiq6bi2c0/MVtcXPW2a5Z 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---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27997824 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27997824 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27997824 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package altree dpkg-buildpackage: info: source version 1.3.2-2build3 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' /usr/bin/make -C Documentation distclean || true make[2]: Entering directory '/<>/Documentation' make[2]: Nothing to be done for 'distclean'. make[2]: Leaving directory '/<>/Documentation' dh_auto_clean make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3" "LD=arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build3 -Wl,-Bsymbolic-functions -Wl,-z,relro" Checking if your kit is complete... Warning: the following files are missing in your kit: CUtils/c_sources/MYMETA.json CUtils/MYMETA.json MYMETA.json Please inform the author. MakeMaker (v7.70) Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib' Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib' Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for altree Writing MYMETA.yml and MYMETA.json debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make -C Documentation pdf make[2]: Entering directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[3]: Entering directory '/<>/Documentation' make[3]: Nothing to be done for 'LU_WATCH_FILES_SAVE'. make[3]: Leaving directory '/<>/Documentation' ======> building manual.pdf <====== Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: Reference `fig:altree' on page 2 undefined on input line 121. Package texdepends Warning: No 'fig/overview.pdftex' file (texdepends) using 1 for graphic dimensions on input line 124. Package texdepends Warning: Figure 'fig/overview.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 124. LaTeX Warning: Reference `fig:nesting_algo' on page 2 undefined on input line 143. Package natbib Warning: Citation `Bardel05' on page 2 undefined on input line 143. Package natbib Warning: Citation `Ge03' on page 2 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 2 undefined on input line 146. Package texdepends Warning: No 'fig/altree-q.pdftex' file (texdepends) using 1 for graphic dimensions on input line 150. Package texdepends Warning: Figure 'fig/altree-q.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 150. LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180. Package natbib Warning: Citation `Stephens01' on page 5 undefined on input line 197. Package natbib Warning: Citation `Stephens03' on page 5 undefined on input line 197. Package natbib Warning: Citation `Becker04' on page 5 undefined on input line 198. Package natbib Warning: Citation `Swofford02' on page 5 undefined on input line 199. Package natbib Warning: Citation `Felsenstein04' on page 5 undefined on input line 200. Package natbib Warning: Citation `YangPAML' on page 5 undefined on input line 200. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278. Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281. Underfull \hbox (badness 1142) in paragraph at lines 281--284 []\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail- Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284. Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288. Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] LaTeX Warning: Reference `help' on page 13 undefined on input line 564. Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 632. LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 633. Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] LaTeX Warning: Reference `help' on page 16 undefined on input line 701. Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. LaTeX Warning: Reference `fig:option_b' on page 19 undefined on input line 846. LaTeX Warning: File `option_b.fig' not found on input line 852. Package texdepends Warning: No 'fig/option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig/option_b_1.fig' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. LaTeX Warning: File `option_b.fig' not found on input line 853. Package texdepends Warning: No 'fig/option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. Package texdepends Warning: Figure 'fig/option_b_2.fig' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 853. Overfull \hbox (9.75981pt too wide) in paragraph at lines 850--865 [][] Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941. Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Package texdepends Warning: No 'fig/create_file_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1009. Package texdepends Warning: Figure 'fig/create_file_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1009. Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Package texdepends Warning: No 'fig/create_file_phy.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1043. Package texdepends Warning: Figure 'fig/create_file_phy.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1043. Package texdepends Warning: No 'fig/association_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1104. Package texdepends Warning: Figure 'fig/association_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1104. Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig/localisation_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1130. Package texdepends Warning: Figure 'fig/localisation_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1130. Package texdepends Warning: No 'fig/association_phylip.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1168. Package texdepends Warning: Figure 'fig/association_phylip.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1168. Package natbib Warning: Citation `Guindon03' on page 28 undefined on input line 1181. Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Package texdepends Warning: No 'fig/association_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1217. Package texdepends Warning: Figure 'fig/association_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1217. Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig/localisation_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1252. Package texdepends Warning: Figure 'fig/localisation_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1252. Chapter 7. Package texdepends Warning: Figure(s) missing. Check dependencies again. Package natbib Warning: There were undefined citations. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `manual.out' has changed. (rerunfilecheck) Rerun to get outlines right /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[3]: Entering directory '/<>/Documentation' ======> building fig/option_b.subfig.mk <====== make[3]: Leaving directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[3]: Entering directory '/<>/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') LU_rebuild_texdepends: new depends required ******************************************** /usr/bin/make LU_REC_LEVEL=2 manual.pdf make[4]: Entering directory '/<>/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2023/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) ======> building fig/overview.pdftex <====== ======> building fig/overview.pdftex_t <====== ======> building fig/altree-q.pdftex <====== ======> building fig/altree-q.pdftex_t <====== ======> building fig/option_b_1.fig <====== ======> building fig/option_b_2.fig <====== ======> building fig/create_file_paup.pdftex <====== ======> building fig/create_file_paup.pdftex_t <====== ======> building fig/create_file_phy.pdftex <====== ======> building fig/create_file_phy.pdftex_t <====== ======> building fig/association_paup.pdftex <====== ======> building fig/association_paup.pdftex_t <====== ======> building fig/localisation_paup.pdftex <====== ======> building fig/localisation_paup.pdftex_t <====== ======> building fig/association_phylip.pdftex <====== ======> building fig/association_phylip.pdftex_t <====== ======> building fig/association_paml.pdftex <====== ======> building fig/association_paml.pdftex_t <====== ======> building fig/localisation_paml.pdftex <====== ======> building fig/localisation_paml.pdftex_t <====== Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[5]: Entering directory '/<>/Documentation' make[5]: Leaving directory '/<>/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. Package natbib Warning: Citation `Bardel05' on page 3 undefined on input line 143. Package natbib Warning: Citation `Ge03' on page 3 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 3 undefined on input line 146. LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180. Package natbib Warning: Citation `Stephens01' on page 4 undefined on input line 197. Package natbib Warning: Citation `Stephens03' on page 4 undefined on input line 197. Package natbib Warning: Citation `Becker04' on page 4 undefined on input line 198. Package natbib Warning: Citation `Swofford02' on page 4 undefined on input line 199. Package natbib Warning: Citation `Felsenstein04' on page 4 undefined on input line 200. Package natbib Warning: Citation `YangPAML' on page 4 undefined on input line 200. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278. Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281. Underfull \hbox (badness 1142) in paragraph at lines 281--284 []\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail- Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284. Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288. Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. Package texdepends Warning: No 'fig/option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig/option_b_1.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. Package texdepends Warning: No 'fig/option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. Package texdepends Warning: Figure 'fig/option_b_2.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 853. Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941. Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package natbib Warning: Citation `Guindon03' on page 26 undefined on input line 1181. Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 []\T1/ptm/m/n/10.95 Z Yang. Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho Package texdepends Warning: Figure(s) missing. Check dependencies again. Package natbib Warning: There were undefined citations. Package natbib Warning: Citation(s) may have changed. (natbib) Rerun to get citations correct. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[5]: Entering directory '/<>/Documentation' make[5]: Leaving directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[5]: Entering directory '/<>/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') LU_rebuild_texdepends: new depends required ******************************************** /usr/bin/make LU_REC_LEVEL=3 manual.pdf make[6]: Entering directory '/<>/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2023/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) ======> building fig/option_b_1.pdftex <====== ======> building fig/option_b_1.pdftex_t <====== ======> building fig/option_b_2.pdftex <====== ======> building fig/option_b_2.pdftex_t <====== Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[7]: Entering directory '/<>/Documentation' make[7]: Leaving directory '/<>/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 []\T1/ptm/m/n/10.95 Z Yang. Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[7]: Entering directory '/<>/Documentation' make[7]: Leaving directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[7]: Entering directory '/<>/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') ******************************************** /usr/bin/make LU_REC_LEVEL=4 manual.pdf make[8]: Entering directory '/<>/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2023/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[9]: Entering directory '/<>/Documentation' make[9]: Leaving directory '/<>/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[9]: Entering directory '/<>/Documentation' make[9]: Leaving directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[9]: Entering directory '/<>/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' /usr/bin/make LU_REC_LEVEL=5 manual.pdf make[10]: Entering directory '/<>/Documentation' make[10]: 'manual.pdf' is up to date. make[10]: Leaving directory '/<>/Documentation' make[9]: Leaving directory '/<>/Documentation' make[8]: Leaving directory '/<>/Documentation' make[7]: Leaving directory '/<>/Documentation' make[6]: Leaving directory '/<>/Documentation' make[5]: Leaving directory '/<>/Documentation' make[4]: Leaving directory '/<>/Documentation' make[3]: Leaving directory '/<>/Documentation' make[2]: Leaving directory '/<>/Documentation' dh_auto_build make -j4 make[2]: Entering directory '/<>' make[3]: Entering directory '/<>/CUtils' make -C c_sources make[4]: Entering directory '/<>/CUtils/c_sources' arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" chisq.c Running Mkbootstrap for CUtils () cp ALTree/Import.pm blib/lib/ALTree/Import.pm cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm cp ALTree/Base.pm blib/lib/ALTree/Base.pm cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm cp ALTree/Input.pm blib/lib/ALTree/Input.pm cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm cp ALTree/Site.pm blib/lib/ALTree/Site.pm cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm cp ALTree/Node.pm blib/lib/ALTree/Node.pm cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm chmod 644 "CUtils.bs" arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" double_permutation.c arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" fisher.c cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils) "/usr/bin/perl" "/usr/share/perl/5.38.2/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.38/ExtUtils/typemap' CUtils.xs > CUtils.xsc arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" mt19937ar.c Please specify prototyping behavior for CUtils.xs (see perlxs manual) mv CUtils.xsc CUtils.c "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 arm-linux-gnueabihf-gcc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" CUtils.c arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" myrand.c arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" resampling.c arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" rhyper.c arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" stats.c arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" z.c z.c:12:13: warning: ‘sccsfid’ defined but not used [-Wunused-variable] 12 | static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85"; | ^~~~~~~ ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o : libaltree-cutils.a make[4]: Leaving directory '/<>/CUtils/c_sources' make[4]: Entering directory '/<>/CUtils/c_sources' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/CUtils/c_sources' rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/altree-1.3.2-2build3 -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong CUtils.o -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \ -lm -lpthread -lgsl -lblas \ chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so Manifying 1 pod document make[3]: Leaving directory '/<>/CUtils' cp progs/altree blib/script/altree cp progs/altree-add-S blib/script/altree-add-S cp progs/altree-convert blib/script/altree-convert "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert Manifying 3 pod documents make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/<>/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/<>/CUtils' make[2]: Entering directory '/<>/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/<>/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/CUtils/c_sources' make[3]: Entering directory '/<>/CUtils/c_sources' No tests defined for ALTree::CUtils extension. make[3]: Leaving directory '/<>/CUtils/c_sources' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/ALTree-CUtils.t ....... 1..1 ok 1 - use ALTree::CUtils; ok t/double_permutation.t .. 1..3 ok 1 - use ALTree::CUtils; ok 2 - undef when bad args ok 3 - double_permutation ok All tests successful. Files=2, Tests=4, 0 wallclock secs ( 0.02 usr 0.02 sys + 0.24 cusr 0.06 csys = 0.34 CPU) Result: PASS make[2]: Leaving directory '/<>/CUtils' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/ALTree.t .. 1..1 ok 1 - use ALTree::Import; ok All tests successful. Files=1, Tests=1, 0 wallclock secs ( 0.02 usr 0.02 sys + 0.22 cusr 0.02 csys = 0.28 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/<>/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/<>/CUtils' Manifying 3 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/CUtils/CUtils.so Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Input.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Utils.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteSens.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteSensPerTree.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Import.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteSensPerForet.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Tree.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Base.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Chi2.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Foret.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/CUtils.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Sens.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Nanova.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SitePerTree.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SitePerForet.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/to_rewrite.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Site.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Node.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteCollection.pm Installing /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/CUtils/autosplit.ix Installing /<>/debian/tmp/usr/share/man/man1/altree-add-S.1p Installing /<>/debian/tmp/usr/share/man/man1/altree.1p Installing /<>/debian/tmp/usr/share/man/man1/altree-convert.1p Installing /<>/debian/tmp/usr/share/man/man3/ALTree::CUtils.3pm Installing /<>/debian/tmp/usr/bin/altree-convert Installing /<>/debian/tmp/usr/bin/altree Installing /<>/debian/tmp/usr/bin/altree-add-S make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a 32259717c95116e37f52a43b4cdc1228c41952fb dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/CUtils/CUtils.so was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing altree (in debian/altree); do_strip: , oemstrip: pkgstriptranslations: processing altree-dbgsym (in debian/.debhelper/altree/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/altree/DEBIAN/control, package altree, directory debian/altree pkgstripfiles: processing control file: debian/.debhelper/altree/dbgsym-root/DEBIAN/control, package altree-dbgsym, directory debian/.debhelper/altree/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package altree ... dpkg-deb: building package 'altree-dbgsym' in 'debian/.debhelper/scratch-space/build-altree/altree-dbgsym_1.3.2-2build3_armhf.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'altree' in '../altree_1.3.2-2build3_armhf.deb'. Renaming altree-dbgsym_1.3.2-2build3_armhf.deb to altree-dbgsym_1.3.2-2build3_armhf.ddeb dpkg-genbuildinfo --build=any -O../altree_1.3.2-2build3_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../altree_1.3.2-2build3_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-01T09:08:36Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ altree_1.3.2-2build3_armhf.changes: ----------------------------------- Format: 1.8 Date: Mon, 01 Apr 2024 16:10:31 +1100 Source: altree Binary: altree Built-For-Profiles: noudeb Architecture: armhf Version: 1.3.2-2build3 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: William Grant Description: altree - program to perform phylogeny-based association and localization a Changes: altree (1.3.2-2build3) noble; urgency=medium . * No-change rebuild for CVE-2024-3094 Checksums-Sha1: fef0bf8cd7a8cbd987c6077337dd05eb0896fea8 345096 altree-dbgsym_1.3.2-2build3_armhf.ddeb 2487c17004f989ae654cd23e474fa0f190f14ec9 9879 altree_1.3.2-2build3_armhf.buildinfo 1fd83ec940d8cfe502717e6cb5641c77398ab796 338172 altree_1.3.2-2build3_armhf.deb Checksums-Sha256: b1fd6add31deea408112d8ad61c0cea8757f6e47907891db754dfd9be68920e4 345096 altree-dbgsym_1.3.2-2build3_armhf.ddeb e828b0f8374ffa11be35a53f42fc24224ba86aed2c15083e0f89bcd0deefdb2b 9879 altree_1.3.2-2build3_armhf.buildinfo 903b1df71fe7ff875d11dedc87c48a52a7d4492251b3343d2fd91fd54647ea94 338172 altree_1.3.2-2build3_armhf.deb Files: 75cfd7d430d5025b5103ebd220df1568 345096 debug optional altree-dbgsym_1.3.2-2build3_armhf.ddeb 1c70e0b590b6ec341ccf7fc2da776def 9879 science optional altree_1.3.2-2build3_armhf.buildinfo b3f754b42f5a3cebe0805cc7baa415a0 338172 science optional altree_1.3.2-2build3_armhf.deb Original-Maintainer: Debian Med Packaging Team /<>/altree_1.3.2-2build3_armhf.changes.new could not be renamed to /<>/altree_1.3.2-2build3_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: altree Binary: altree altree-dbgsym Architecture: armhf Version: 1.3.2-2build3 Checksums-Md5: 75cfd7d430d5025b5103ebd220df1568 345096 altree-dbgsym_1.3.2-2build3_armhf.ddeb b3f754b42f5a3cebe0805cc7baa415a0 338172 altree_1.3.2-2build3_armhf.deb Checksums-Sha1: fef0bf8cd7a8cbd987c6077337dd05eb0896fea8 345096 altree-dbgsym_1.3.2-2build3_armhf.ddeb 1fd83ec940d8cfe502717e6cb5641c77398ab796 338172 altree_1.3.2-2build3_armhf.deb Checksums-Sha256: b1fd6add31deea408112d8ad61c0cea8757f6e47907891db754dfd9be68920e4 345096 altree-dbgsym_1.3.2-2build3_armhf.ddeb 903b1df71fe7ff875d11dedc87c48a52a7d4492251b3343d2fd91fd54647ea94 338172 altree_1.3.2-2build3_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Mon, 01 Apr 2024 09:08:35 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu1), autotools-dev (= 20220109.1), base-files (= 13ubuntu9), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu4), bash-completion (= 1:2.11-8), binutils (= 2.42-4ubuntu2), binutils-arm-linux-gnueabihf (= 2.42-4ubuntu2), binutils-common (= 2.42-4ubuntu2), bsdextrautils (= 2.39.3-9ubuntu4), bsdutils (= 1:2.39.3-9ubuntu4), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3ubuntu5), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-23ubuntu3), cpp-13-arm-linux-gnueabihf (= 13.2.0-23ubuntu3), cpp-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu5), debconf (= 1.5.86), debhelper (= 13.14.1ubuntu5), debianutils (= 5.17build1), debugedit (= 1:5.0-5build1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6ubuntu6), dpkg-dev (= 1.22.6ubuntu6), dwz (= 0.15-1build6), fig2dev (= 1:3.2.9-3build2), file (= 1:5.45-3build1), findutils (= 4.9.0-5), fontconfig-config (= 2.15.0-1.1ubuntu2), fonts-lmodern (= 2.005-1), fonts-urw-base35 (= 20200910-8), g++ (= 4:13.2.0-7ubuntu1), g++-13 (= 13.2.0-23ubuntu3), g++-13-arm-linux-gnueabihf (= 13.2.0-23ubuntu3), g++-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), gawk (= 1:5.2.1-2build3), gcc (= 4:13.2.0-7ubuntu1), gcc-13 (= 13.2.0-23ubuntu3), gcc-13-arm-linux-gnueabihf (= 13.2.0-23ubuntu3), gcc-13-base (= 13.2.0-23ubuntu3), gcc-14-base (= 14-20240330-1ubuntu2), gcc-arm-linux-gnueabihf (= 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1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xz-utils (= 5.6.1+really5.4.5-1build1), zlib1g (= 1:1.3.dfsg-3.1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1711948231" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ altree_1.3.2-2build3_armhf.deb ------------------------------ new Debian package, version 2.0. size 338172 bytes: control archive=1693 bytes. 937 bytes, 17 lines control 2796 bytes, 34 lines md5sums Package: altree Version: 1.3.2-2build3 Architecture: armhf Maintainer: Ubuntu Developers Installed-Size: 534 Depends: libblas3 | libblas.so.3, libc6 (>= 2.38), libgsl27 (>= 2.7.1), perl (>= 5.38.2-3.2build1), perlapi-5.38.2t64, libmath-tamuanova-perl Recommends: libopenblas0 | libblis4 | libmkl-rt | libblas.so.3 Suggests: altree-examples Section: science Priority: optional Homepage: https://gitlab.inria.fr/NGS/ALTree Description: program to perform phylogeny-based association and localization analysis ALTree was designed to perform association detection and localization of susceptibility sites using haplotype phylogenetic trees: first, it allows the detection of an association between a candidate gene and a disease, and second, it enables to make hypothesis about the susceptibility loci. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2024-04-01 05:10 ./ drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/ drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/bin/ -rwxr-xr-x root/root 55855 2024-04-01 05:10 ./usr/bin/altree -rwxr-xr-x root/root 15365 2024-04-01 05:10 ./usr/bin/altree-add-S -rwxr-xr-x root/root 22801 2024-04-01 05:10 ./usr/bin/altree-convert drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/lib/arm-linux-gnueabihf/perl5/ drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/ -rw-r--r-- root/root 342 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Base.pm -rw-r--r-- root/root 3081 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/CUtils.pm -rw-r--r-- root/root 2897 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Chi2.pm -rw-r--r-- root/root 2817 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Foret.pm -rw-r--r-- root/root 2026 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Import.pm -rw-r--r-- root/root 24521 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Input.pm -rw-r--r-- root/root 2371 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Nanova.pm -rw-r--r-- root/root 5965 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Node.pm -rw-r--r-- root/root 1455 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Sens.pm -rw-r--r-- root/root 1895 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Site.pm -rw-r--r-- root/root 1044 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteCollection.pm -rw-r--r-- root/root 3569 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SitePerForet.pm -rw-r--r-- root/root 876 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SitePerTree.pm -rw-r--r-- root/root 1287 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteSens.pm -rw-r--r-- root/root 905 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteSensPerForet.pm -rw-r--r-- root/root 2781 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/SiteSensPerTree.pm -rw-r--r-- root/root 4804 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Tree.pm -rw-r--r-- root/root 1467 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/Utils.pm -rw-r--r-- root/root 9288 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ALTree/to_rewrite.pm drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/ drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/CUtils/ -rw-r--r-- root/root 48476 2024-04-01 05:10 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/CUtils/CUtils.so -rw-r--r-- root/root 95 2024-04-01 05:10 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ALTree/CUtils/autosplit.ix drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/share/ drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/share/doc-base/ -rw-r--r-- root/root 513 2023-11-29 10:13 ./usr/share/doc-base/altree.altree drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/share/doc/altree/ -rw-r--r-- root/root 1441 2021-09-17 14:32 ./usr/share/doc/altree/README -rw-r--r-- root/root 321 2023-11-29 10:13 ./usr/share/doc/altree/README.test -rw-r--r-- root/root 1107 2024-04-01 05:10 ./usr/share/doc/altree/changelog.Debian.gz -rw-r--r-- root/root 1223 2023-11-29 10:13 ./usr/share/doc/altree/copyright -rw-r--r-- root/root 281036 2024-04-01 05:10 ./usr/share/doc/altree/manual.pdf drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/share/man/ drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/share/man/man1/ -rw-r--r-- root/root 1707 2024-04-01 05:10 ./usr/share/man/man1/altree-add-S.1p.gz -rw-r--r-- root/root 1789 2024-04-01 05:10 ./usr/share/man/man1/altree-convert.1p.gz -rw-r--r-- root/root 2809 2024-04-01 05:10 ./usr/share/man/man1/altree.1p.gz drwxr-xr-x root/root 0 2024-04-01 05:10 ./usr/share/man/man3/ -rw-r--r-- root/root 1564 2024-04-01 05:10 ./usr/share/man/man3/ALTree::CUtils.3pm.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 17392 Build-Time: 52 Distribution: noble-proposed Host Architecture: armhf Install-Time: 526 Job: altree_1.3.2-2build3.dsc Machine Architecture: arm64 Package: altree Package-Time: 580 Source-Version: 1.3.2-2build3 Space: 17392 Status: successful Version: 1.3.2-2build3 -------------------------------------------------------------------------------- Finished at 2024-04-01T09:08:36Z Build needed 00:09:40, 17392k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27997824 Scanning for processes to kill in build PACKAGEBUILD-27997824