https://launchpad.net/ubuntu/+source/amap-align/2.2+git20080214.600fc29+dfsg-2/+build/20306382 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-032 4.15.0-123-generic #126-Ubuntu SMP Wed Oct 21 09:40:04 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 16 Nov 17:18:47 ntpdate[1651]: adjust time server 10.211.37.1 offset 0.003253 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20306382 --image-type chroot /home/buildd/filecache-default/6663ab897c1b9684e4da3138ea2f806b3d40e7b1 Creating target for build PACKAGEBUILD-20306382 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20306382 Starting target for build PACKAGEBUILD-20306382 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20306382 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20306382 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20306382 Updating target for build PACKAGEBUILD-20306382 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [88.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [88.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main armhf Packages [1341 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe armhf Packages [12.3 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5332 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf Packages [164 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [75.2 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe armhf Packages [1650 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [596 kB] Fetched 22.5 MB in 10s (2215 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.32 perl-modules-5.32 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common coreutils cpp-10 dash dpkg dpkg-dev fakeroot g++-10 gcc-10 gcc-10-base grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libidn2-0 libip4tc2 libmpc3 libncurses6 libncursesw6 libnpth0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 linux-libc-dev ncurses-base ncurses-bin perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata 73 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 216 MB of archives. After this operation, 632 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main armhf libcrypt-dev armhf 1:4.4.17-1ubuntu1 [113 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute/main armhf libcrypt1 armhf 1:4.4.17-1ubuntu1 [86.7 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libc6-dev armhf 2.32-0ubuntu5 [1580 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libc-dev-bin armhf 2.32-0ubuntu5 [29.6 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf linux-libc-dev armhf 5.8.0-26.27 [1135 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libtirpc-common all 1.2.6-3 [7444 B] Get:7 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libtirpc-dev armhf 1.2.6-3 [175 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libtirpc3 armhf 1.2.6-3 [66.1 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main armhf libcc1-0 armhf 10.2.0-17ubuntu1 [34.7 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main armhf gcc-10-base armhf 10.2.0-17ubuntu1 [19.5 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcc-s1 armhf 10.2.0-17ubuntu1 [36.3 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main armhf libgomp1 armhf 10.2.0-17ubuntu1 [87.1 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main armhf libatomic1 armhf 10.2.0-17ubuntu1 [7264 B] Get:14 http://ftpmaster.internal/ubuntu hirsute/main armhf libasan6 armhf 10.2.0-17ubuntu1 [328 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main armhf libubsan1 armhf 10.2.0-17ubuntu1 [122 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main armhf g++-10 armhf 10.2.0-17ubuntu1 [63.0 MB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main armhf libstdc++-10-dev armhf 10.2.0-17ubuntu1 [1813 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcc-10-dev armhf 10.2.0-17ubuntu1 [719 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main armhf gcc-10 armhf 10.2.0-17ubuntu1 [63.7 MB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main armhf cpp-10 armhf 10.2.0-17ubuntu1 [57.0 MB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main armhf libstdc++6 armhf 10.2.0-17ubuntu1 [441 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libmpc3 armhf 1.2.0-1 [36.1 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libctf-nobfd0 armhf 2.35.1-2ubuntu1 [38.7 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libctf0 armhf 2.35.1-2ubuntu1 [37.6 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libbinutils armhf 2.35.1-2ubuntu1 [322 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils-common armhf 2.35.1-2ubuntu1 [212 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils armhf 2.35.1-2ubuntu1 [3368 B] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.35.1-2ubuntu1 [2060 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libc6 armhf 2.32-0ubuntu5 [2120 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main armhf base-files armhf 11ubuntu16 [60.2 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main armhf bash armhf 5.1~rc2-1ubuntu1 [613 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf coreutils armhf 8.32-4ubuntu1 [1206 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf dpkg armhf 1.20.5ubuntu3 [1127 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main armhf dash armhf 0.5.11+git20200708+dd9ef66-2 [78.9 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main armhf grep armhf 3.6-1 [143 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libncursesw6 armhf 6.2+20200918-1 [106 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libncurses6 armhf 6.2+20200918-1 [79.9 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libtinfo6 armhf 6.2+20200918-1 [74.2 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf ncurses-bin armhf 6.2+20200918-1 [165 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf perl-modules-5.32 all 5.32.0-5 [2754 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libperl5.32 armhf 5.32.0-5 [3366 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf perl armhf 5.32.0-5 [225 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf perl-base armhf 5.32.0-5 [1423 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libdebconfclient0 armhf 0.255ubuntu1 [5692 B] Get:45 http://ftpmaster.internal/ubuntu hirsute/main armhf base-passwd armhf 3.5.48 [46.0 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libc-bin armhf 2.32-0ubuntu5 [495 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf ncurses-base all 6.2+20200918-1 [18.7 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main armhf sysvinit-utils armhf 2.96-5ubuntu1 [19.2 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libgcrypt20 armhf 1.8.7-2ubuntu1 [364 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd-sysv armhf 246.6-2ubuntu1 [10.3 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd-timesyncd armhf 246.6-2ubuntu1 [27.8 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libapparmor1 armhf 3.0.0-0ubuntu4 [30.8 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main armhf libaudit-common all 1:2.8.5-3ubuntu2 [4092 B] Get:54 http://ftpmaster.internal/ubuntu hirsute/main armhf libaudit1 armhf 1:2.8.5-3ubuntu2 [36.2 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main armhf libcap2 armhf 1:2.44-1 [14.7 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main armhf libcryptsetup12 armhf 2:2.3.4-1ubuntu1 [174 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main armhf libidn2-0 armhf 2.3.0-3 [49.4 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main armhf libip4tc2 armhf 1.8.5-3ubuntu3 [16.7 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main armhf libseccomp2 armhf 2.4.3-1ubuntu5 [32.6 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd armhf 246.6-2ubuntu1 [3971 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main armhf libsystemd0 armhf 246.6-2ubuntu1 [247 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main armhf libudev1 armhf 246.6-2ubuntu1 [59.9 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main armhf libapt-pkg6.0 armhf 2.1.11 [773 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main armhf apt armhf 2.1.11 [1254 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main armhf libselinux1 armhf 3.1-2build1 [60.9 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage-common all 3.1-1build1 [10.1 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage1 armhf 3.1-1build1 [75.7 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf readline-common all 8.1~rc2-2 [54.1 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libreadline8 armhf 8.1~rc2-2 [115 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main armhf tzdata all 2020d-1ubuntu1 [293 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf dpkg-dev all 1.20.5ubuntu3 [758 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libdpkg-perl all 1.20.5ubuntu3 [232 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libfakeroot armhf 1.25.3-1 [23.2 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf fakeroot armhf 1.25.3-1 [60.9 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main armhf libnpth0 armhf 1.6-3 [6980 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 216 MB in 14s (15.5 MB/s) (Reading database ... 12723 files and directories 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Universal Time is now: Mon Nov 16 17:20:57 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1) ... Setting up libncurses6:armhf (6.2+20200918-1) ... Setting up libmpc3:armhf (1.2.0-1) ... Setting up libatomic1:armhf (10.2.0-17ubuntu1) ... Setting up libncursesw6:armhf (6.2+20200918-1) ... Setting up libperl5.32:armhf (5.32.0-5) ... Setting up libubsan1:armhf (10.2.0-17ubuntu1) ... Setting up libcrypt-dev:armhf (1:4.4.17-1ubuntu1) ... Setting up libcryptsetup12:armhf (2:2.3.4-1ubuntu1) ... Setting up libbinutils:armhf (2.35.1-2ubuntu1) ... Setting up libc-dev-bin (2.32-0ubuntu5) ... Setting up readline-common (8.1~rc2-2) ... Setting up libcc1-0:armhf (10.2.0-17ubuntu1) ... Setting up cpp-10 (10.2.0-17ubuntu1) ... Setting up libctf0:armhf (2.35.1-2ubuntu1) ... Setting up libtirpc3:armhf (1.2.6-3) ... Setting up libgcc-10-dev:armhf (10.2.0-17ubuntu1) ... Setting up libreadline8:armhf (8.1~rc2-2) ... Setting up perl (5.32.0-5) ... Setting up libtirpc-dev:armhf (1.2.6-3) ... Setting up libdpkg-perl (1.20.5ubuntu3) ... Setting up libc6-dev:armhf (2.32-0ubuntu5) ... Setting up binutils-arm-linux-gnueabihf (2.35.1-2ubuntu1) ... Setting up libstdc++-10-dev:armhf (10.2.0-17ubuntu1) ... Setting up binutils (2.35.1-2ubuntu1) ... Setting up dpkg-dev (1.20.5ubuntu3) ... Setting up gcc-10 (10.2.0-17ubuntu1) ... Setting up g++-10 (10.2.0-17ubuntu1) ... Setting up systemd (246.6-2ubuntu1) ... Initializing machine ID from random generator. Setting up systemd-timesyncd (246.6-2ubuntu1) ... Setting up systemd-sysv (246.6-2ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu5) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20306382 armhf hirsute-proposed -c chroot:build-PACKAGEBUILD-20306382 --arch=armhf --dist=hirsute-proposed --nolog amap-align_2.2+git20080214.600fc29+dfsg-2.dsc Initiating build PACKAGEBUILD-20306382 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-123-generic #126-Ubuntu SMP Wed Oct 21 09:40:04 UTC 2020 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-032.buildd +===================================================================================+ | amap-align 2.2+git20080214.600fc29+dfsg-2 (armhf) Mon, 16 Nov 2020 17:21:02 +0000 | +===================================================================================+ Package: amap-align Version: 2.2+git20080214.600fc29+dfsg-2 Source Version: 2.2+git20080214.600fc29+dfsg-2 Distribution: hirsute-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20306382/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- amap-align_2.2+git20080214.600fc29+dfsg-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/amap-align-CVKeuM/amap-align-2.2+git20080214.600fc29+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/amap-align-CVKeuM' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-o8Tu4Z/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-o8Tu4Z/apt_archive ./ InRelease Get:2 copy:/<>/resolver-o8Tu4Z/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-o8Tu4Z/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-o8Tu4Z/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-o8Tu4Z/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (35.0 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-o8Tu4Z/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (58.2 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14642 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13) Filtered Build-Depends: debhelper-compat (= 13) dpkg-deb: building package 'sbuild-build-depends-amap-align-dummy' in '/<>/resolver-o8Tu4Z/apt_archive/sbuild-build-depends-amap-align-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-amap-align-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-o8Tu4Z/apt_archive ./ InRelease Get:2 copy:/<>/resolver-o8Tu4Z/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-o8Tu4Z/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-o8Tu4Z/apt_archive ./ Sources [493 B] Get:5 copy:/<>/resolver-o8Tu4Z/apt_archive ./ Packages [574 B] Fetched 2030 B in 0s (34.7 kB/s) Reading package lists... Reading package lists... Install amap-align build dependencies (apt-based resolver) ---------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-amap-align-dummy 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 16.4 MB of archives. After this operation, 61.1 MB of additional disk space will be used. Get:1 copy:/<>/resolver-o8Tu4Z/apt_archive ./ sbuild-build-depends-amap-align-dummy 0.invalid.0 [868 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main armhf bsdextrautils armhf 2.36-3ubuntu1 [70.6 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main armhf groff-base armhf 1.22.4-5 [759 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main armhf libpipeline1 armhf 1.5.3-1 [23.3 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main armhf man-db armhf 2.9.3-2 [1082 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main armhf libmagic-mgc armhf 1:5.38-5 [218 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main armhf libmagic1 armhf 1:5.38-5 [68.4 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main armhf file armhf 1:5.38-5 [22.4 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libelf1 armhf 0.182-1 [39.4 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libglib2.0-0 armhf 2.66.2-1 [1139 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main armhf libicu67 armhf 67.1-4 [8304 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libxml2 armhf 2.9.10+dfsg-6.2 [530 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main armhf gettext-base armhf 0.19.8.1-10build1 [46.0 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main armhf libsigsegv2 armhf 2.12-2build1 [13.0 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main armhf m4 armhf 1.4.18-4 [187 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main armhf autoconf all 2.69-11.1 [321 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main armhf automake all 1:1.16.2-4ubuntu1 [548 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main armhf autopoint all 0.19.8.1-10build1 [412 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main armhf libtool all 2.4.6-14 [161 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main armhf dh-autoreconf all 19 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main armhf libdebhelper-perl all 13.2.1ubuntu1 [63.6 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:26 http://ftpmaster.internal/ubuntu hirsute/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main armhf dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:28 http://ftpmaster.internal/ubuntu hirsute/main armhf dwz armhf 0.13-5 [153 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main armhf gettext armhf 0.19.8.1-10build1 [835 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main armhf po-debconf all 1.0.21 [233 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main armhf debhelper all 13.2.1ubuntu1 [879 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.4 MB in 1s (14.9 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 14642 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36-3ubuntu1_armhf.deb ... Unpacking bsdextrautils (2.36-3ubuntu1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../01-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_armhf.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../03-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_armhf.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.38-5_armhf.deb ... Unpacking libmagic-mgc (1:5.38-5) ... 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Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up sbuild-build-depends-amap-align-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu5) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-123-generic arm64 (armv7l) Toolchain package versions: binutils_2.35.1-2ubuntu1 dpkg-dev_1.20.5ubuntu3 g++-10_10.2.0-17ubuntu1 gcc-10_10.2.0-17ubuntu1 libc6-dev_2.32-0ubuntu5 libstdc++-10-dev_10.2.0-17ubuntu1 libstdc++6_10.2.0-17ubuntu1 linux-libc-dev_5.8.0-26.27 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1~rc2-1ubuntu1 binutils_2.35.1-2ubuntu1 binutils-arm-linux-gnueabihf_2.35.1-2ubuntu1 binutils-common_2.35.1-2ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 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libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.0-17ubuntu1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-3 libip4tc2_1.8.5-3ubuntu3 libisl22_0.22.1-1 libjson-c5_0.15-1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-3_1.17-10 libkrb5support0_1.17-10 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3ubuntu1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20200918-1 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.21-2build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libreadline8_8.1~rc2-2 libseccomp2_2.4.3-1ubuntu5 libselinux1_3.1-2build1 libsemanage-common_3.1-1build1 libsemanage1_3.1-1build1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.36-3ubuntu1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu4 libstdc++-10-dev_10.2.0-17ubuntu1 libstdc++6_10.2.0-17ubuntu1 libsub-override-perl_0.09-2 libsystemd0_246.6-2ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-17ubuntu1 libuchardet0_0.0.7-1 libudev1_246.6-2ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36-3ubuntu1 libxml2_2.9.10+dfsg-6.2 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-26.27 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3ubuntu1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 readline-common_8.1~rc2-2 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-amap-align-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-2ubuntu1 systemd-sysv_246.6-2ubuntu1 systemd-timesyncd_246.6-2ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.30+dfsg-7 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36-3ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Nov 16 09:15:40 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./amap-align_2.2+git20080214.600fc29+dfsg-2.dsc dpkg-source: info: extracting amap-align in /<>/amap-align-2.2+git20080214.600fc29+dfsg dpkg-source: info: unpacking amap-align_2.2+git20080214.600fc29+dfsg.orig.tar.xz dpkg-source: info: unpacking amap-align_2.2+git20080214.600fc29+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-gcc-4.3.diff dpkg-source: info: applying fix-gcc-4.6.diff dpkg-source: info: applying hardening.patch dpkg-source: info: applying mayhem.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20306382 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20306382 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20306382 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package amap-align dpkg-buildpackage: info: source version 2.2+git20080214.600fc29+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --sourcedirectory=align dh_auto_clean -O--sourcedirectory=align cd align && make -j4 clean make[1]: Entering directory '/<>/amap-align-2.2+git20080214.600fc29+dfsg/align' rm -f amap make[1]: Leaving directory '/<>/amap-align-2.2+git20080214.600fc29+dfsg/align' dh_autoreconf_clean -O--sourcedirectory=align dh_clean -O--sourcedirectory=align debian/rules binary-arch dh binary-arch --sourcedirectory=align dh_update_autotools_config -a -O--sourcedirectory=align dh_autoreconf -a -O--sourcedirectory=align dh_auto_configure -a -O--sourcedirectory=align debian/rules override_dh_auto_build make[1]: Entering directory '/<>/amap-align-2.2+git20080214.600fc29+dfsg' dh_auto_build cd align && make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/amap-align-2.2+git20080214.600fc29+dfsg/align' g++ -g -O2 -fdebug-prefix-map=/<>/amap-align-2.2+git20080214.600fc29+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -W -Wall -pedantic -DNDEBUG -DNumInsertStates=1 -DVERSION='"AMAP.2.2"' -funroll-loops -lm -o amap Amap.cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from MultiSequence.h:18, from Amap.cc:8: Sequence.h: In member function ‘Sequence* Sequence::Clone() const’: Sequence.h:293:21: warning: implicitly-declared ‘SafeVector& SafeVector::operator=(const SafeVector&)’ is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from Amap.cc:7: SafeVector.h:29:3: note: because ‘SafeVector’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = char]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ In file included from Amap.cc:9: MultiSequenceDag.h: In member function ‘std::string MultiSequenceDag::GetSequences()’: MultiSequenceDag.h:749:92: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 749 | else if (pepGroup[(int) oldPtrs[j][colPos[j]] - 'A'] == consensus || consensus >= 'A' && pepSim[(int) consensus - 'A'][(int) oldPtrs[j][colPos[j]] - 'A']) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MultiSequenceDag.h: In member function ‘MultiSequence* MultiSequenceDag::AlignDag(const SafeVector >&, float, bool, bool, bool, float)’: MultiSequenceDag.h:849:67: warning: operation on ‘guiFrame’ may be undefined [-Wsequence-point] 849 | if (outputForGUI && guiStartWeight >= edge->weight && !(guiFrame = ++guiFrame % guiStepSize)) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ MultiSequenceDag.h:849:67: warning: operation on ‘guiFrame’ may be undefined [-Wsequence-point] In file included from Amap.cc:12: ProbabilisticModel.h: In member function ‘void ProbabilisticModel::ComputeNewParameters(Sequence*, Sequence*, const VF&, const VF&, VF&, VF&, VF&, VVF&, VF&, bool) const’: ProbabilisticModel.h:504:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 504 | if (enableTrainEmissions && i != 1 || j != 1){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ Amap.cc: In function ‘void PrintParameters(const char*, const VF&, const VF&, const VF&, const VVF&, const VF&, const char*)’: Amap.cc:323:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 323 | for (int i = 0; i < NumMatrixTypes; i++) fprintf (file, "%.10f ", initDistrib[i]); fprintf (file, "\n"); | ^~~ Amap.cc:323:88: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 323 | for (int i = 0; i < NumMatrixTypes; i++) fprintf (file, "%.10f ", initDistrib[i]); fprintf (file, "\n"); | ^~~~~~~ Amap.cc:324:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 324 | for (int i = 0; i < 2*NumInsertStates; i++) fprintf (file, "%.10f ", gapOpen[i]); fprintf (file, "\n"); | ^~~ Amap.cc:324:87: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 324 | for (int i = 0; i < 2*NumInsertStates; i++) fprintf (file, "%.10f ", gapOpen[i]); fprintf (file, "\n"); | ^~~~~~~ Amap.cc:325:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 325 | for (int i = 0; i < 2*NumInsertStates; i++) fprintf (file, "%.10f ", gapExtend[i]); fprintf (file, "\n"); | ^~~ Amap.cc:325:89: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 325 | for (int i = 0; i < 2*NumInsertStates; i++) fprintf (file, "%.10f ", gapExtend[i]); fprintf (file, "\n"); | ^~~~~~~ Amap.cc: In function ‘MultiSequence* DoAlign(MultiSequence*, const ProbabilisticModel&, VF&, VF&, VF&, VVF&, VF&)’: Amap.cc:482:24: warning: implicitly-declared ‘SafeVector >& SafeVector >::operator=(const SafeVector >&)’ is deprecated [-Wdeprecated-copy] 482 | sparseMatrices = originalSparseMatrices; | ^~~~~~~~~~~~~~~~~~~~~~ In file included from Amap.cc:7: SafeVector.h:29:3: note: because ‘SafeVector >’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = SafeVector]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ Amap.cc: In function ‘void ReadParameters()’: Amap.cc:1081:40: warning: implicitly-declared ‘SafeVector >& SafeVector >::operator=(const SafeVector >&)’ is deprecated [-Wdeprecated-copy] 1081 | emitPairs = VVF (256, VF (256, 1e-10)); | ^ In file included from Amap.cc:7: SafeVector.h:29:3: note: because ‘SafeVector >’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = SafeVector]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ Amap.cc:1082:29: warning: implicitly-declared ‘SafeVector& SafeVector::operator=(const SafeVector&)’ is deprecated [-Wdeprecated-copy] 1082 | emitSingle = VF (256, 1e-5); | ^ In file included from Amap.cc:7: SafeVector.h:29:3: note: because ‘SafeVector’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = float]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ make[2]: Leaving directory '/<>/amap-align-2.2+git20080214.600fc29+dfsg/align' #### This is how the *.jar can be recreated # cd display && mkdir -p lib && ant jar #### Unfortunately the command suggested in readme ## java -jar display/AmapDisplay.jar examples/BB12020.tfa.out #### segfaults. So currently this display function is not supported make[1]: Leaving directory '/<>/amap-align-2.2+git20080214.600fc29+dfsg' dh_auto_test -a -O--sourcedirectory=align create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=align dh_prep -a -O--sourcedirectory=align dh_auto_install -a -O--sourcedirectory=align dh_install -a -O--sourcedirectory=align dh_installdocs -a -O--sourcedirectory=align dh_installchangelogs -a -O--sourcedirectory=align debian/rules override_dh_installexamples make[1]: Entering directory '/<>/amap-align-2.2+git20080214.600fc29+dfsg' dh_installexamples chmod 644 debian/amap-align/usr/share/doc/amap-align/examples/BB12020.tfa make[1]: Leaving directory '/<>/amap-align-2.2+git20080214.600fc29+dfsg' dh_installman -a -O--sourcedirectory=align dh_installsystemduser -a -O--sourcedirectory=align dh_perl -a -O--sourcedirectory=align dh_link -a -O--sourcedirectory=align dh_strip_nondeterminism -a -O--sourcedirectory=align dh_compress -a -O--sourcedirectory=align dh_fixperms -a -O--sourcedirectory=align dh_missing -a -O--sourcedirectory=align dh_dwz -a -a -O--sourcedirectory=align dh_strip -a -a -O--sourcedirectory=align dh_makeshlibs -a -a -O--sourcedirectory=align dh_shlibdeps -a -a -O--sourcedirectory=align dpkg-shlibdeps: warning: debian/amap-align/usr/bin/amap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a -O--sourcedirectory=align dh_gencontrol -a -O--sourcedirectory=align dh_md5sums -a -O--sourcedirectory=align dh_builddeb -a -O--sourcedirectory=align INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing amap-align (in debian/amap-align); do_strip: , oemstrip: pkgstriptranslations: processing amap-align-dbgsym (in debian/.debhelper/amap-align/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/amap-align/DEBIAN/control, package amap-align, directory debian/amap-align pkgstripfiles: Truncating usr/share/doc/amap-align/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package amap-align ... pkgstripfiles: No PNG files. dpkg-deb: building package 'amap-align' in '../amap-align_2.2+git20080214.600fc29+dfsg-2_armhf.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/amap-align/dbgsym-root/DEBIAN/control, package amap-align-dbgsym, directory debian/.debhelper/amap-align/dbgsym-root dpkg-deb: building package 'amap-align-dbgsym' in 'debian/.debhelper/scratch-space/build-amap-align/amap-align-dbgsym_2.2+git20080214.600fc29+dfsg-2_armhf.deb'. Renaming amap-align-dbgsym_2.2+git20080214.600fc29+dfsg-2_armhf.deb to amap-align-dbgsym_2.2+git20080214.600fc29+dfsg-2_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../amap-align_2.2+git20080214.600fc29+dfsg-2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-11-16T17:23:41Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ amap-align_2.2+git20080214.600fc29+dfsg-2_armhf.changes: -------------------------------------------------------- Format: 1.8 Date: Mon, 16 Nov 2020 09:45:41 +0100 Source: amap-align Binary: amap-align Architecture: armhf Version: 2.2+git20080214.600fc29+dfsg-2 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: amap-align - Protein multiple alignment by sequence annealing Changes: amap-align (2.2+git20080214.600fc29+dfsg-2) unstable; urgency=medium . * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit. * Refer to specific version of license GPL-2+. 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109768 science optional amap-align_2.2+git20080214.600fc29+dfsg-2_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: amap-align Binary: amap-align amap-align-dbgsym Architecture: armhf Version: 2.2+git20080214.600fc29+dfsg-2 Checksums-Md5: 18ae1ee31921d13ab3a2384e090216df 834228 amap-align-dbgsym_2.2+git20080214.600fc29+dfsg-2_armhf.ddeb 9d45ecec9534f454e3fb2e6701641075 109768 amap-align_2.2+git20080214.600fc29+dfsg-2_armhf.deb Checksums-Sha1: c2fa1c615dda89fc9d544fdeba43a84e85cff862 834228 amap-align-dbgsym_2.2+git20080214.600fc29+dfsg-2_armhf.ddeb 48c4cf297a9cd5d52fc05fb3c4d8f0a7562bf449 109768 amap-align_2.2+git20080214.600fc29+dfsg-2_armhf.deb Checksums-Sha256: de1836e42a899fc3dbb19b6f5b02df2ee4dbc7b52003e7d76c67ef09f7cf79fb 834228 amap-align-dbgsym_2.2+git20080214.600fc29+dfsg-2_armhf.ddeb 0d2a42bbcf5c72c418d602643ba59fb57fa456d4bd344ef94734cdab05c5a52e 109768 amap-align_2.2+git20080214.600fc29+dfsg-2_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Mon, 16 Nov 2020 17:23:40 +0000 Build-Path: /<>/amap-align-2.2+git20080214.600fc29+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-4ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1~rc2-1ubuntu1), binutils (= 2.35.1-2ubuntu1), binutils-arm-linux-gnueabihf (= 2.35.1-2ubuntu1), binutils-common (= 2.35.1-2ubuntu1), bsdextrautils (= 2.36-3ubuntu1), bsdutils (= 1:2.36-3ubuntu1), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-4ubuntu1), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.0-17ubuntu1), dash (= 0.5.11+git20200708+dd9ef66-2), debconf (= 1.5.74), debhelper (= 13.2.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu3), dpkg-dev (= 1.20.5ubuntu3), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1ubuntu2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.0-17ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.0-17ubuntu1), gcc-10-base (= 10.2.0-17ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-17ubuntu1), libatomic1 (= 10.2.0-17ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu2), libaudit1 (= 1:2.8.5-3ubuntu2), libbinutils (= 2.35.1-2ubuntu1), libblkid1 (= 2.36-3ubuntu1), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu5), libc-dev-bin (= 2.32-0ubuntu5), libc6 (= 2.32-0ubuntu5), libc6-dev (= 2.32-0ubuntu5), libcap-ng0 (= 0.7.9-2.2), 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libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3ubuntu1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-5), libpipeline1 (= 1.5.3-1), libseccomp2 (= 2.4.3-1ubuntu5), libselinux1 (= 3.1-2build1), libsigsegv2 (= 2.12-2build1), libsmartcols1 (= 2.36-3ubuntu1), libssl1.1 (= 1.1.1f-1ubuntu4), libstdc++-10-dev (= 10.2.0-17ubuntu1), libstdc++6 (= 10.2.0-17ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-2ubuntu1), libtinfo6 (= 6.2+20200918-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libubsan1 (= 10.2.0-17ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-2ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3ubuntu1), libxml2 (= 2.9.10+dfsg-6.2), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-26.27), login (= 1:4.8.1-1ubuntu6), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20200918-1), ncurses-bin (= 6.2+20200918-1), patch (= 2.7.6-6), perl (= 5.32.0-5), perl-base (= 5.32.0-5), perl-modules-5.32 (= 5.32.0-5), po-debconf (= 1.0.21), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.30+dfsg-7), util-linux (= 2.36-3ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605516341" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ amap-align_2.2+git20080214.600fc29+dfsg-2_armhf.deb --------------------------------------------------- new Debian package, version 2.0. size 109768 bytes: control archive=1168 bytes. 987 bytes, 20 lines control 710 bytes, 10 lines md5sums Package: amap-align Version: 2.2+git20080214.600fc29+dfsg-2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1118 Depends: libc6 (>= 2.27), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://github.com/mes5k/amap-align Description: Protein multiple alignment by sequence annealing AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows one to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation. . The Java visualisation tool of AMAP 2.2 is not yet packaged in Debian. drwxr-xr-x root/root 0 2020-11-16 08:45 ./ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/bin/ -rwxr-xr-x root/root 150728 2020-11-16 08:45 ./usr/bin/amap drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/doc/amap-align/ -rw-r--r-- root/root 382 2020-11-16 08:45 ./usr/share/doc/amap-align/NEWS.Debian.gz -rw-r--r-- root/root 3912 2008-02-14 00:36 ./usr/share/doc/amap-align/PROBCONS.README -rw-r--r-- root/root 1049 2008-02-14 00:36 ./usr/share/doc/amap-align/README -rw-r--r-- root/root 477 2020-11-16 08:45 ./usr/share/doc/amap-align/README.Debian -rw-r--r-- root/root 2165 2020-11-16 08:45 ./usr/share/doc/amap-align/changelog.Debian.gz -rw-r--r-- root/root 2548 2020-11-16 08:45 ./usr/share/doc/amap-align/copyright drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/doc/amap-align/examples/ -rw-r--r-- root/root 545 2008-02-14 00:36 ./usr/share/doc/amap-align/examples/BB12020.tfa -rwxr-xr-x root/root 963850 2008-02-14 00:36 ./usr/share/doc/amap-align/examples/BB12020.tfa.out drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-16 08:45 ./usr/share/man/man1/ -rw-r--r-- root/root 2898 2020-11-16 08:45 ./usr/share/man/man1/amap.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 126 Distribution: hirsute-proposed Host Architecture: armhf Install-Time: 29 Job: amap-align_2.2+git20080214.600fc29+dfsg-2.dsc Machine Architecture: arm64 Package: amap-align Package-Time: 159 Source-Version: 2.2+git20080214.600fc29+dfsg-2 Space: n/a Status: successful Version: 2.2+git20080214.600fc29+dfsg-2 -------------------------------------------------------------------------------- Finished at 2020-11-16T17:23:41Z Build needed 00:02:39, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20306382 Scanning for processes to kill in build PACKAGEBUILD-20306382