https://launchpad.net/ubuntu/+source/amp/0.6.1-1build9/+build/26953643 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lgw01-074 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_234~642~ubuntu20.04.1 python3-lpbuildd_234~642~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 2 Nov 18:47:54 ntpdate[756446]: adjust time server 10.211.37.1 offset -0.001572 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953643 --image-type chroot /home/buildd/filecache-default/20a3246b7a16d5658607d7f37229fcda30a33651 Creating target for build PACKAGEBUILD-26953643 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953643 Starting target for build PACKAGEBUILD-26953643 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953643 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26953643 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953643 Updating target for build PACKAGEBUILD-26953643 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [213 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 Packages [1340 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe riscv64 Packages [14.6 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6003 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 Packages [112 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [51.7 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 Packages [668 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [309 kB] Fetched 24.0 MB in 49s (490 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash-completion binutils binutils-common binutils-riscv64-linux-gnu cpp-13 debianutils diffutils dpkg dpkg-dev g++-13 gcc-13 gcc-13-base grep libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgcc-13-dev libgcc-s1 libgnutls30 libgomp1 libidn2-0 liblzma5 libncursesw6 libnsl-dev libnsl2 libpng16-16 libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxxhash0 libzstd1 mawk ncurses-base ncurses-bin openssl optipng systemd systemd-dev systemd-sysv xz-utils 67 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 83.1 MB of archives. After this operation, 2147 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main riscv64 libnsl-dev riscv64 1.3.0-3 [135 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc6-dev riscv64 2.38-3ubuntu1 [3401 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc-dev-bin riscv64 2.38-3ubuntu1 [19.2 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main riscv64 libnsl2 riscv64 1.3.0-3 [42.0 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 libcc1-0 riscv64 13.2.0-6ubuntu1 [45.4 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-13-base riscv64 13.2.0-6ubuntu1 [44.3 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcc-s1 riscv64 13.2.0-6ubuntu1 [57.1 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main riscv64 libgomp1 riscv64 13.2.0-6ubuntu1 [140 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main riscv64 libatomic1 riscv64 13.2.0-6ubuntu1 [9488 B] Get:10 http://ftpmaster.internal/ubuntu noble/main riscv64 libasan8 riscv64 13.2.0-6ubuntu1 [2509 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main riscv64 g++-13 riscv64 13.2.0-6ubuntu1 [11.9 MB] Get:12 http://ftpmaster.internal/ubuntu noble/main riscv64 libstdc++-13-dev riscv64 13.2.0-6ubuntu1 [5449 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcc-13-dev riscv64 13.2.0-6ubuntu1 [3123 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-13 riscv64 13.2.0-6ubuntu1 [20.8 MB] Get:15 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp-13 riscv64 13.2.0-6ubuntu1 [10.5 MB] Get:16 http://ftpmaster.internal/ubuntu noble/main riscv64 libstdc++6 riscv64 13.2.0-6ubuntu1 [779 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libzstd1 riscv64 1.5.5+dfsg2-2 [349 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libctf-nobfd0 riscv64 2.41-6ubuntu1 [105 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libctf0 riscv64 2.41-6ubuntu1 [103 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsframe1 riscv64 2.41-6ubuntu1 [15.6 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libbinutils riscv64 2.41-6ubuntu1 [483 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 binutils-common riscv64 2.41-6ubuntu1 [221 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 binutils riscv64 2.41-6ubuntu1 [2996 B] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 binutils-riscv64-linux-gnu riscv64 2.41-6ubuntu1 [894 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc6 riscv64 2.38-3ubuntu1 [2742 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main riscv64 base-files riscv64 13ubuntu4 [73.5 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main riscv64 debianutils riscv64 5.14 [88.8 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main riscv64 diffutils riscv64 1:3.10-1 [180 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 liblzma5 riscv64 5.4.4-0.1 [127 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libapparmor1 riscv64 4.0.0~alpha2-0ubuntu6 [48.2 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main riscv64 libaudit-common all 1:3.1.1-1build1 [5510 B] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcap-ng0 riscv64 0.8.3-1build3 [15.3 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main riscv64 libaudit1 riscv64 1:3.1.1-1build1 [47.1 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libselinux1 riscv64 3.5-1build1 [83.1 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libssl3 riscv64 3.0.10-1ubuntu2.1 [1712 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main riscv64 systemd-sysv riscv64 253.5-1ubuntu7 [11.5 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main riscv64 systemd-dev all 253.5-1ubuntu7 [78.5 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main riscv64 systemd riscv64 253.5-1ubuntu7 [3067 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main riscv64 libsystemd-shared riscv64 253.5-1ubuntu7 [1903 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main riscv64 libsystemd0 riscv64 253.5-1ubuntu7 [423 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main riscv64 libudev1 riscv64 253.5-1ubuntu7 [163 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main riscv64 libxxhash0 riscv64 0.8.2-2 [43.7 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libapt-pkg6.0 riscv64 2.7.6 [989 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dpkg riscv64 1.22.1ubuntu1 [1396 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main riscv64 grep riscv64 3.11-3 [167 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 ncurses-bin riscv64 6.4+20231016-1 [184 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main riscv64 base-passwd riscv64 3.6.2 [52.1 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc-bin riscv64 2.38-3ubuntu1 [601 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 ncurses-base all 6.4+20231016-1 [24.7 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt riscv64 2.7.6 [1335 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt-utils riscv64 2.7.6 [225 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main riscv64 libunistring5 riscv64 1.1-2 [544 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main riscv64 libidn2-0 riscv64 2.3.4-1build1 [99.3 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgnutls30 riscv64 3.8.1-4ubuntu3 [995 kB] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsemanage-common all 3.5-1build1 [9982 B] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsemanage2 riscv64 3.5-1build1 [97.7 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libncursesw6 riscv64 6.4+20231016-1 [150 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtinfo6 riscv64 6.4+20231016-1 [107 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main riscv64 mawk riscv64 1.3.4.20230808-1 [125 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main riscv64 libargon2-1 riscv64 0~20190702+dfsg-4 [23.7 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsqlite3-0 riscv64 3.43.2-1 [693 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 openssl riscv64 3.0.10-1ubuntu2.1 [1170 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main riscv64 bash-completion all 1:2.11-8 [180 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpng16-16 riscv64 1.6.40-2 [189 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 xz-utils riscv64 5.4.4-0.1 [268 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dpkg-dev all 1.22.1ubuntu1 [1148 kB] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdpkg-perl all 1.22.1ubuntu1 [285 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main riscv64 optipng riscv64 0.7.7-3 [86.9 kB] Preconfiguring packages ... Fetched 83.1 MB in 20s (4110 kB/s) (Reading database ... 13552 files and directories currently installed.) Preparing to unpack .../0-libnsl-dev_1.3.0-3_riscv64.deb ... Unpacking libnsl-dev:riscv64 (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../1-libc6-dev_2.38-3ubuntu1_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../2-libc-dev-bin_2.38-3ubuntu1_riscv64.deb ... Unpacking libc-dev-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../3-libnsl2_1.3.0-3_riscv64.deb ... Unpacking libnsl2:riscv64 (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../4-libcc1-0_13.2.0-6ubuntu1_riscv64.deb ... Unpacking libcc1-0:riscv64 (13.2.0-6ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../5-gcc-13-base_13.2.0-6ubuntu1_riscv64.deb ... Unpacking gcc-13-base:riscv64 (13.2.0-6ubuntu1) over (13.2.0-4ubuntu3) ... Setting up gcc-13-base:riscv64 (13.2.0-6ubuntu1) ... 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Setting up gcc-13 (13.2.0-6ubuntu1) ... Setting up g++-13 (13.2.0-6ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26953643 riscv64 noble-proposed -c chroot:build-PACKAGEBUILD-26953643 --arch=riscv64 --dist=noble-proposed --nolog amp_0.6.1-1build9.dsc Initiating build PACKAGEBUILD-26953643 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lgw01-074.buildd +==============================================================================+ | amp 0.6.1-1build9 (riscv64) Thu, 02 Nov 2023 18:56:09 +0000 | +==============================================================================+ Package: amp Version: 0.6.1-1build9 Source Version: 0.6.1-1build9 Distribution: noble-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26953643/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/amp-R9DEUu/resolver-WwZh6i' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- amp_0.6.1-1build9.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/amp-R9DEUu/amp-0.6.1' with '<>' I: NOTICE: Log filtering will replace 'build/amp-R9DEUu' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 11), dh-python, gfortran, python3-all-dev, python3-ase (>= 3.9.0~), python3-matplotlib, python3-nose, python3-numpy, python3-scipy, python3-setuptools, python3-pexpect, python3-zmq, openssh-server, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 11), dh-python, gfortran, python3-all-dev, python3-ase (>= 3.9.0~), python3-matplotlib, python3-nose, python3-numpy, python3-scipy, python3-setuptools, python3-pexpect, python3-zmq, openssh-server, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [456 B] Get:5 copy:/<>/apt_archive ./ Packages [543 B] Fetched 1956 B in 1s (3452 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev blt debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-lyx gettext gettext-base gfortran gfortran-13 groff-base intltool-debian libarchive-zip-perl libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libcbor0.8 libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libexpat1 libexpat1-dev libfido2-1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libmagic-mgc libmagic1 libnorm1 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpgm-5.3-0 libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libraqm0 libsharpyuv0 libsodium23 libsub-override-perl libtcl8.6 libtiff6 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libwrap0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libzmq5 m4 man-db media-types openssh-client openssh-server openssh-sftp-server po-debconf python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-ase python3-attr python3-beniget python3-brotli python3-cffi-backend python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-gast python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-nose python3-numpy python3-packaging python3-pexpect python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-ptyprocess python3-py python3-pyparsing python3-pythran python3-scipy python3-setuptools python3-six python3-spglib python3-sympy python3-tk python3-tz python3-ufolib2 python3-zmq python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal tk8.6-blt2.5 ucf unicode-data x11-common zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo dh-make flit python3-build python3-installer python3-wheel gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-13-doc libcoarrays-dev groff libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev low-memory-monitor libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libtool-doc gcj-jdk libxsimd-doc m4-doc apparmor less www-browser keychain libpam-ssh monkeysphere ssh-askpass molly-guard ufw libmail-box-perl python3-doc python3-venv python-ase-doc python3-netcdf4 python3-pycodcif python-attr-doc python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 python-nose-doc python3-pytest python-pexpect-doc python-pil-doc python-ply-doc subversion python-pyparsing-doc python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.11-venv python3.11-doc binfmt-support python3.12-venv python3.12-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev xauth default-logind | logind | libpam-systemd ncurses-term ssh-import-id libmail-sendmail-perl python3-bs4 python3-html5lib python3-olefile isympy-common The following NEW packages will be installed: autoconf automake autopoint autotools-dev blt debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-lyx gettext gettext-base gfortran gfortran-13 groff-base intltool-debian libarchive-zip-perl libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libcbor0.8 libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libexpat1 libexpat1-dev libfido2-1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libmagic-mgc libmagic1 libnorm1 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpgm-5.3-0 libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libraqm0 libsharpyuv0 libsodium23 libsub-override-perl libtcl8.6 libtiff6 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libwrap0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libzmq5 m4 man-db media-types openssh-client openssh-server openssh-sftp-server po-debconf python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-ase python3-attr python3-beniget python3-brotli python3-cffi-backend python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-gast python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-nose python3-numpy python3-packaging python3-pexpect python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-ptyprocess python3-py python3-pyparsing python3-pythran python3-scipy python3-setuptools python3-six python3-spglib python3-sympy python3-tk python3-tz python3-ufolib2 python3-zmq python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal sbuild-build-depends-main-dummy tk8.6-blt2.5 ucf unicode-data x11-common zlib1g-dev 0 upgraded, 176 newly installed, 0 to remove and 0 not upgraded. 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libpython3.12-minimal riscv64 3.12.0-1 [823 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main riscv64 python3.12-minimal riscv64 3.12.0-1 [2303 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main riscv64 libelf1 riscv64 0.189-4 [51.9 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main riscv64 libfribidi0 riscv64 1.0.13-3 [26.1 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libglib2.0-0 riscv64 2.78.1-1 [1586 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main riscv64 libicu72 riscv64 72.1-3ubuntu3 [10.8 MB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libxml2 riscv64 2.9.14+dfsg-1.3build1 [708 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-cffi-backend riscv64 1.16.0-1ubuntu1 [114 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-pkg-resources all 68.1.2-2 [167 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main riscv64 libmagic-mgc riscv64 1:5.45-2 [307 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main riscv64 libmagic1 riscv64 1:5.45-2 [93.6 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main riscv64 file riscv64 1:5.45-2 [21.7 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gettext-base riscv64 0.21-13build1 [41.6 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main riscv64 libuchardet0 riscv64 0.0.7-1build2 [78.9 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main riscv64 groff-base riscv64 1.23.0-3 [1017 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main riscv64 libpipeline1 riscv64 1.5.7-1 [26.8 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main riscv64 libxau6 riscv64 1:1.0.9-1build5 [6836 B] Get:37 http://ftpmaster.internal/ubuntu noble/main riscv64 libxdmcp6 riscv64 1:1.1.3-0ubuntu5 [10.3 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb1 riscv64 1.15-1 [42.1 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libx11-data all 2:1.8.7-1 [115 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libx11-6 riscv64 2:1.8.7-1 [663 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main riscv64 libxext6 riscv64 2:1.3.4-1build1 [27.8 kB] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 man-db riscv64 2.12.0-1 [1214 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main riscv64 m4 riscv64 1.4.19-4 [261 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main riscv64 autoconf all 2.71-3 [339 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main riscv64 autotools-dev all 20220109.1 [44.9 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main riscv64 automake all 1:1.16.5-1.3 [558 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 autopoint all 0.21-13build1 [422 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main riscv64 libtcl8.6 riscv64 8.6.13+dfsg-2 [944 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libbrotli1 riscv64 1.0.9-2build9 [333 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main riscv64 libfreetype6 riscv64 2.13.2+dfsg-1 [420 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main riscv64 fonts-dejavu-mono all 2.37-8 [502 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main riscv64 fonts-dejavu-core all 2.37-8 [835 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main riscv64 fontconfig-config riscv64 2.14.2-4ubuntu1 [35.8 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main riscv64 libfontconfig1 riscv64 2.14.2-4ubuntu1 [139 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main riscv64 libxrender1 riscv64 1:0.9.10-1.1 [17.5 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main riscv64 libxft2 riscv64 2.3.6-1 [39.0 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main riscv64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main riscv64 libxss1 riscv64 1:1.2.3-1build2 [7676 B] Get:59 http://ftpmaster.internal/ubuntu noble/main riscv64 libtk8.6 riscv64 8.6.13-2 [698 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main riscv64 tk8.6-blt2.5 riscv64 2.5.3+dfsg-4.1build2 [549 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main riscv64 blt riscv64 2.5.3+dfsg-4.1build2 [4838 B] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdebhelper-perl all 13.11.7ubuntu1 [85.8 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main riscv64 libtool all 2.4.7-7 [166 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main riscv64 libsub-override-perl all 0.09-4 [8706 B] Get:67 http://ftpmaster.internal/ubuntu noble/main riscv64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main riscv64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:69 http://ftpmaster.internal/ubuntu noble/main riscv64 libdw1 riscv64 0.189-4 [234 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main riscv64 debugedit riscv64 1:5.0-5 [48.8 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main riscv64 dwz riscv64 0.15-1 [115 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gettext riscv64 0.21-13build1 [867 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main riscv64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main riscv64 po-debconf all 1.0.21+nmu1 [233 kB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 debhelper all 13.11.7ubuntu1 [940 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-lib2to3 all 3.11.5-1 [79.0 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-distutils all 3.11.5-1 [131 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-setuptools all 68.1.2-2 [396 kB] Get:79 http://ftpmaster.internal/ubuntu noble/universe riscv64 dh-python all 6.20231025 [110 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main riscv64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] Get:81 http://ftpmaster.internal/ubuntu noble/universe riscv64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] Get:82 http://ftpmaster.internal/ubuntu noble/universe riscv64 fonts-lyx all 2.3.7-1 [167 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main riscv64 libgfortran5 riscv64 13.2.0-6ubuntu1 [457 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main riscv64 libgfortran-13-dev riscv64 13.2.0-6ubuntu1 [1330 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main riscv64 gfortran-13 riscv64 13.2.0-6ubuntu1 [11.0 MB] Get:86 http://ftpmaster.internal/ubuntu noble/main riscv64 gfortran riscv64 4:13.2.0-1ubuntu1 [1184 B] Get:87 http://ftpmaster.internal/ubuntu noble/main riscv64 libblas3 riscv64 3.11.0-2build1 [131 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost1.74-dev riscv64 1.74.0+ds1-23ubuntu2 [9584 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main riscv64 libboost-dev riscv64 1.74.0.3ubuntu7 [3492 B] Get:90 http://ftpmaster.internal/ubuntu noble/main riscv64 libdeflate0 riscv64 1.18-1 [39.0 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main riscv64 libexpat1-dev riscv64 2.5.0-2 [292 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main riscv64 libgraphite2-3 riscv64 1.3.14-1build2 [71.5 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main riscv64 libharfbuzz0b riscv64 8.0.1-1 [489 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main riscv64 libimagequant0 riscv64 2.17.0-1 [32.1 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg-turbo8 riscv64 2.1.5-2ubuntu1 [119 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg8 riscv64 8c-2ubuntu11 [2150 B] Get:97 http://ftpmaster.internal/ubuntu noble/universe riscv64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main riscv64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:99 http://ftpmaster.internal/ubuntu noble/universe riscv64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main riscv64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main riscv64 libjs-sphinxdoc all 5.3.0-7 [130 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libopenblas0-pthread riscv64 0.3.24+ds-1 [3102 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main riscv64 liblapack3 riscv64 3.11.0-2build1 [2088 kB] Get:104 http://ftpmaster.internal/ubuntu noble/universe riscv64 liblbfgsb0 riscv64 3.0+dfsg.4-1 [27.6 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main riscv64 liblcms2-2 riscv64 2.14-2 [145 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main riscv64 liblerc4 riscv64 4.0.0+ds-2ubuntu2 [172 kB] Get:107 http://ftpmaster.internal/ubuntu noble/universe riscv64 libnorm1 riscv64 1.5.9+dfsg-2 [216 kB] Get:108 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libopenblas0 riscv64 0.3.24+ds-1 [6166 B] Get:109 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libopenblas-pthread-dev riscv64 0.3.24+ds-1 [7592 kB] Get:110 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libopenblas-dev riscv64 0.3.24+ds-1 [19.1 kB] Get:111 http://ftpmaster.internal/ubuntu noble/universe riscv64 libpgm-5.3-0 riscv64 5.3.128~dfsg-2 [153 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main riscv64 libpython3.11 riscv64 3.11.6-3 [2197 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main riscv64 zlib1g-dev riscv64 1:1.2.13.dfsg-1ubuntu5 [972 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main riscv64 libpython3.11-dev riscv64 3.11.6-3 [15.4 MB] Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpython3-dev riscv64 3.11.4-5ubuntu1 [9824 B] Get:116 http://ftpmaster.internal/ubuntu noble/main riscv64 libpython3.12-stdlib riscv64 3.12.0-1 [1987 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main riscv64 libpython3.12 riscv64 3.12.0-1 [2371 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main riscv64 libpython3.12-dev riscv64 3.12.0-1 [16.7 MB] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpython3-all-dev riscv64 3.11.4-5ubuntu1 [920 B] Get:120 http://ftpmaster.internal/ubuntu noble/universe riscv64 libqhull-r8.0 riscv64 2020.2-6 [181 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main riscv64 libraqm0 riscv64 0.10.1-1 [13.2 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main riscv64 libsharpyuv0 riscv64 1.3.2-0.3 [14.0 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main riscv64 libsodium23 riscv64 1.0.18-1build2 [131 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main riscv64 libjbig0 riscv64 2.1-6.1ubuntu1 [28.0 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main riscv64 libwebp7 riscv64 1.3.2-0.3 [198 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main riscv64 libtiff6 riscv64 4.5.1+git230720-1ubuntu1 [200 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main riscv64 libwebpdemux2 riscv64 1.3.2-0.3 [12.7 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main riscv64 libwebpmux3 riscv64 1.3.2-0.3 [27.3 kB] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libxsimd-dev riscv64 10.0.0-3 [103 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main riscv64 libxslt1.1 riscv64 1.1.35-1 [146 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libzmq5 riscv64 4.3.5-1 [311 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main riscv64 python3.12 riscv64 3.12.0-1 [629 kB] Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-all riscv64 3.11.4-5ubuntu1 [912 B] Get:135 http://ftpmaster.internal/ubuntu noble/main riscv64 python3.11-dev riscv64 3.11.6-3 [500 kB] Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-dev riscv64 3.11.4-5ubuntu1 [26.8 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main riscv64 python3.12-dev riscv64 3.12.0-1 [498 kB] Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-all-dev riscv64 3.11.4-5ubuntu1 [920 B] Get:139 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-appdirs all 1.4.4-4 [10.9 kB] Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-numpy riscv64 1:1.24.2-1ubuntu1 [4631 kB] Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-decorator all 5.1.1-5 [10.1 kB] Get:142 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-gast all 0.5.2-2 [9394 B] Get:143 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-beniget all 0.4.1-3 [10.0 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-ply all 3.11-5 [47.5 kB] Get:145 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-pythran riscv64 0.14.0+ds-2 [438 kB] Get:146 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-scipy riscv64 1.10.1-5 [16.1 MB] Get:147 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-spglib riscv64 2.0.2-1build4 [231 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-six all 1.16.0-4 [12.4 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-dateutil all 2.8.2-3 [79.2 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main riscv64 libopenjp2-7 riscv64 2.5.0-2 [175 kB] Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-pil riscv64 10.1.0-1 [503 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-tk riscv64 3.11.5-1 [115 kB] Get:153 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-pil.imagetk riscv64 10.1.0-1 [9580 B] Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-pyparsing all 3.1.1-1 [86.2 kB] Get:155 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-contourpy riscv64 1.0.7-1build2 [306 kB] Get:156 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-cycler all 0.11.0-1 [8156 B] Get:157 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-brotli riscv64 1.0.9-2build9 [341 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-attr all 23.1.0-2 [50.6 kB] Get:159 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] Get:160 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-mpmath all 1.2.1-2 [419 kB] Get:161 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-sympy all 1.12-6 [3966 kB] Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-tz all 2023.3.post1-1 [31.3 kB] Get:163 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-fs all 2.4.16-2 [91.0 kB] Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-lxml riscv64 4.9.3-1build1 [2154 kB] Get:165 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-lz4 riscv64 4.0.2+dfsg-1build2 [27.5 kB] Get:166 http://ftpmaster.internal/ubuntu noble/universe riscv64 unicode-data all 15.1.0-1 [8878 kB] Get:167 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-fonttools riscv64 4.38.0-1build2 [1196 kB] Get:168 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-kiwisolver riscv64 1.4.4-1build2 [94.1 kB] Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-packaging all 23.2-1 [40.6 kB] Get:170 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-matplotlib riscv64 3.6.3-1ubuntu3 [6970 kB] Get:171 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-ase all 3.22.1-3 [1405 kB] Get:172 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-nose all 1.3.7-11 [117 kB] Get:173 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-ptyprocess all 0.7.0-5 [15.1 kB] Get:174 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-pexpect all 4.8.0-4ubuntu1 [46.4 kB] Get:175 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-py all 1.11.0-1 [73.2 kB] Get:176 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-zmq riscv64 24.0.1-4build2 [384 kB] Preconfiguring packages ... Fetched 171 MB in 42s (4085 kB/s) Selecting previously unselected package libpython3.11-minimal:riscv64. (Reading database ... 13554 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.6-3_riscv64.deb ... Unpacking libpython3.11-minimal:riscv64 (3.11.6-3) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../libexpat1_2.5.0-2_riscv64.deb ... Unpacking libexpat1:riscv64 (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.6-3_riscv64.deb ... Unpacking python3.11-minimal (3.11.6-3) ... Setting up libpython3.11-minimal:riscv64 (3.11.6-3) ... Setting up libexpat1:riscv64 (2.5.0-2) ... Setting up python3.11-minimal (3.11.6-3) ... Selecting previously unselected package python3-minimal. (Reading database ... 13868 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.4-5ubuntu1_riscv64.deb ... 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Unpacking libwebpdemux2:riscv64 (1.3.2-0.3) ... Selecting previously unselected package libwebpmux3:riscv64. Preparing to unpack .../118-libwebpmux3_1.3.2-0.3_riscv64.deb ... Unpacking libwebpmux3:riscv64 (1.3.2-0.3) ... Selecting previously unselected package libxsimd-dev:riscv64. Preparing to unpack .../119-libxsimd-dev_10.0.0-3_riscv64.deb ... Unpacking libxsimd-dev:riscv64 (10.0.0-3) ... Selecting previously unselected package libxslt1.1:riscv64. Preparing to unpack .../120-libxslt1.1_1.1.35-1_riscv64.deb ... Unpacking libxslt1.1:riscv64 (1.1.35-1) ... Selecting previously unselected package libzmq5:riscv64. Preparing to unpack .../121-libzmq5_4.3.5-1_riscv64.deb ... Unpacking libzmq5:riscv64 (4.3.5-1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../122-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... Selecting previously unselected package python3.12. 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Selecting previously unselected package python3-appdirs. Preparing to unpack .../129-python3-appdirs_1.4.4-4_all.deb ... Unpacking python3-appdirs (1.4.4-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../130-python3-numpy_1%3a1.24.2-1ubuntu1_riscv64.deb ... Unpacking python3-numpy (1:1.24.2-1ubuntu1) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../131-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-gast. Preparing to unpack .../132-python3-gast_0.5.2-2_all.deb ... Unpacking python3-gast (0.5.2-2) ... Selecting previously unselected package python3-beniget. Preparing to unpack .../133-python3-beniget_0.4.1-3_all.deb ... Unpacking python3-beniget (0.4.1-3) ... Selecting previously unselected package python3-ply. Preparing to unpack .../134-python3-ply_3.11-5_all.deb ... Unpacking python3-ply (3.11-5) ... Selecting previously unselected package python3-pythran. Preparing to unpack .../135-python3-pythran_0.14.0+ds-2_riscv64.deb ... Unpacking python3-pythran (0.14.0+ds-2) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../136-python3-scipy_1.10.1-5_riscv64.deb ... Unpacking python3-scipy (1.10.1-5) ... Selecting previously unselected package python3-spglib. Preparing to unpack .../137-python3-spglib_2.0.2-1build4_riscv64.deb ... Unpacking python3-spglib (2.0.2-1build4) ... Selecting previously unselected package python3-six. Preparing to unpack .../138-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../139-python3-dateutil_2.8.2-3_all.deb ... Unpacking python3-dateutil (2.8.2-3) ... Selecting previously unselected package libopenjp2-7:riscv64. Preparing to unpack .../140-libopenjp2-7_2.5.0-2_riscv64.deb ... Unpacking libopenjp2-7:riscv64 (2.5.0-2) ... Selecting previously unselected package python3-pil:riscv64. Preparing to unpack .../141-python3-pil_10.1.0-1_riscv64.deb ... Unpacking python3-pil:riscv64 (10.1.0-1) ... Selecting previously unselected package python3-tk:riscv64. Preparing to unpack .../142-python3-tk_3.11.5-1_riscv64.deb ... Unpacking python3-tk:riscv64 (3.11.5-1) ... Selecting previously unselected package python3-pil.imagetk:riscv64. Preparing to unpack .../143-python3-pil.imagetk_10.1.0-1_riscv64.deb ... Unpacking python3-pil.imagetk:riscv64 (10.1.0-1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../144-python3-pyparsing_3.1.1-1_all.deb ... Unpacking python3-pyparsing (3.1.1-1) ... Selecting previously unselected package python3-contourpy. Preparing to unpack .../145-python3-contourpy_1.0.7-1build2_riscv64.deb ... Unpacking python3-contourpy (1.0.7-1build2) ... Selecting previously unselected package python3-cycler. 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Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../158-python3-kiwisolver_1.4.4-1build2_riscv64.deb ... Unpacking python3-kiwisolver (1.4.4-1build2) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../159-python3-packaging_23.2-1_all.deb ... Unpacking python3-packaging (23.2-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../160-python3-matplotlib_3.6.3-1ubuntu3_riscv64.deb ... Unpacking python3-matplotlib (3.6.3-1ubuntu3) ... Selecting previously unselected package python3-ase. Preparing to unpack .../161-python3-ase_3.22.1-3_all.deb ... Unpacking python3-ase (3.22.1-3) ... Selecting previously unselected package python3-nose. Preparing to unpack .../162-python3-nose_1.3.7-11_all.deb ... Unpacking python3-nose (1.3.7-11) ... Selecting previously unselected package python3-ptyprocess. Preparing to unpack .../163-python3-ptyprocess_0.7.0-5_all.deb ... Unpacking python3-ptyprocess (0.7.0-5) ... Selecting previously unselected package python3-pexpect. Preparing to unpack .../164-python3-pexpect_4.8.0-4ubuntu1_all.deb ... Unpacking python3-pexpect (4.8.0-4ubuntu1) ... Selecting previously unselected package python3-py. Preparing to unpack .../165-python3-py_1.11.0-1_all.deb ... Unpacking python3-py (1.11.0-1) ... Selecting previously unselected package python3-zmq. Preparing to unpack .../166-python3-zmq_24.0.1-4build2_riscv64.deb ... Unpacking python3-zmq (24.0.1-4build2) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../167-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:riscv64 (1.5.7-1) ... Setting up libgraphite2-3:riscv64 (1.3.14-1build2) ... Setting up liblcms2-2:riscv64 (2.14-2) ... Setting up libsharpyuv0:riscv64 (1.3.2-0.3) ... Setting up libxau6:riscv64 (1:1.0.9-1build5) ... Setting up libboost1.74-dev:riscv64 (1.74.0+ds1-23ubuntu2) ... Setting up libsodium23:riscv64 (1.0.18-1build2) ... Setting up libicu72:riscv64 (72.1-3ubuntu3) ... Setting up liblerc4:riscv64 (4.0.0+ds-2ubuntu2) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:riscv64 (2.78.1-1) ... No schema files found: doing nothing. Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up libpgm-5.3-0:riscv64 (5.3.128~dfsg-2) ... Setting up fonts-lyx (2.3.7-1) ... Setting up libcbor0.8:riscv64 (0.8.0-2ubuntu1) ... Setting up libpython3.11-stdlib:riscv64 (3.11.6-3) ... Setting up libdebhelper-perl (13.11.7ubuntu1) ... Setting up libbrotli1:riscv64 (1.0.9-2build9) ... Setting up libnorm1:riscv64 (1.5.9+dfsg-2) ... Setting up libpython3.12-minimal:riscv64 (3.12.0-1) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:riscv64 (1:5.45-2) ... Setting up libdeflate0:riscv64 (1.18-1) ... Setting up gettext-base (0.21-13build1) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:riscv64 (2020.2-6) ... Setting up file (1:5.45-2) ... Setting up libjbig0:riscv64 (2.1-6.1ubuntu1) ... Setting up unicode-data (15.1.0-1) ... Setting up libxsimd-dev:riscv64 (10.0.0-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:riscv64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up libexpat1-dev:riscv64 (2.5.0-2) ... Setting up libfreetype6:riscv64 (2.13.2+dfsg-1) ... Setting up libwrap0:riscv64 (7.6.q-32) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libfribidi0:riscv64 (1.0.13-3) ... Setting up libimagequant0:riscv64 (2.17.0-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libtcl8.6:riscv64 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-13build1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up ucf (3.0043+nmu1) ... Setting up libjpeg-turbo8:riscv64 (2.1.5-2ubuntu1) ... Setting up libgfortran5:riscv64 (13.2.0-6ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:riscv64 (1.3.2-0.3) ... Setting up zlib1g-dev:riscv64 (1:1.2.13.dfsg-1ubuntu5) ... Setting up libuchardet0:riscv64 (0.0.7-1build2) ... Setting up libopenjp2-7:riscv64 (2.5.0-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:riscv64 (8.0.1-1) ... Setting up libboost-dev:riscv64 (1.74.0.3ubuntu7) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:riscv64 (1.13.0-1) ... Setting up libgfortran-13-dev:riscv64 (13.2.0-6ubuntu1) ... Setting up python-matplotlib-data (3.6.3-1ubuntu3) ... Setting up libwebpmux3:riscv64 (1.3.2-0.3) ... Setting up libbsd0:riscv64 (0.11.7-4) ... Setting up libelf1:riscv64 (0.189-4) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1.3build1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libpython3-stdlib:riscv64 (3.11.4-5ubuntu1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libjpeg8:riscv64 (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.0-1) ... Setting up python3.11 (3.11.6-3) ... Setting up libdw1:riscv64 (0.189-4) ... Setting up libxdmcp6:riscv64 (1:1.1.3-0ubuntu5) ... Setting up liblapack3:riscv64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up libxcb1:riscv64 (1.15-1) ... Setting up gettext (0.21-13build1) ... Setting up libopenblas0-pthread:riscv64 (0.3.24+ds-1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode update-alternatives: using /usr/lib/riscv64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode update-alternatives: using /usr/lib/riscv64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/riscv64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-riscv64-linux-gnu) in auto mode Setting up libzmq5:riscv64 (4.3.5-1) ... Setting up libpython3.12-stdlib:riscv64 (3.12.0-1) ... Setting up libpython3.11:riscv64 (3.11.6-3) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.14.2-4ubuntu1) ... Setting up libwebpdemux2:riscv64 (1.3.2-0.3) ... Setting up python3.12 (3.12.0-1) ... Setting up libedit2:riscv64 (3.1-20230828-1) ... Setting up python3 (3.11.4-5ubuntu1) ... Setting up python3-tz (2023.3.post1-1) ... /usr/lib/python3/dist-packages/pytz/__init__.py:30: SyntaxWarning: invalid escape sequence '\s' match = re.match("^#\s*version\s*([0-9a-z]*)\s*$", line) Setting up intltool-debian (0.35.0+20060710.6) ... Setting up python3-six (1.16.0-4) ... Setting up dh-autoreconf (20) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (23.2-1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up gfortran-13 (13.2.0-6ubuntu1) ... Setting up libpython3.11-dev:riscv64 (3.11.6-3) ... Setting up python3-brotli (1.0.9-2build9) ... Setting up libraqm0:riscv64 (0.10.1-1) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.4.4-1build2) ... Setting up libjs-sphinxdoc (5.3.0-7) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libopenblas0:riscv64 (0.3.24+ds-1) ... Setting up groff-base (1.23.0-3) ... Setting up libtiff6:riscv64 (4.5.1+git230720-1ubuntu1) ... Setting up libxslt1.1:riscv64 (1.1.35-1) ... Setting up debugedit (1:5.0-5) ... Setting up libx11-6:riscv64 (2:1.8.7-1) ... Setting up python3-dateutil (2.8.2-3) ... Setting up libfontconfig1:riscv64 (2.14.2-4ubuntu1) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up libpython3.12:riscv64 (3.12.0-1) ... Setting up python3-cffi-backend:riscv64 (1.16.0-1ubuntu1) ... Setting up liblbfgsb0:riscv64 (3.0+dfsg.4-1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up libopenblas-pthread-dev:riscv64 (0.3.24+ds-1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/riscv64-linux-gnu/libblas.so (libblas.so-riscv64-linux-gnu) in auto mode update-alternatives: using /usr/lib/riscv64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/riscv64-linux-gnu/liblapack.so (liblapack.so-riscv64-linux-gnu) in auto mode update-alternatives: using /usr/lib/riscv64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/riscv64-linux-gnu/libopenblas.so (libopenblas.so-riscv64-linux-gnu) in auto mode Setting up python3-sympy (1.12-6) ... Setting up python3-attr (23.1.0-2) ... Setting up libpython3-dev:riscv64 (3.11.4-5ubuntu1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up libxrender1:riscv64 (1:0.9.10-1.1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1build2) ... Setting up python3.11-dev (3.11.6-3) ... Setting up openssh-client (1:9.3p1-1ubuntu3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up libxext6:riscv64 (2:1.3.4-1build1) ... Setting up python3-all (3.11.4-5ubuntu1) ... Setting up libpython3.12-dev:riscv64 (3.12.0-1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-nose (1.3.7-11) ... /usr/lib/python3/dist-packages/nose/config.py:142: SyntaxWarning: invalid escape sequence '\.' """nose configuration. /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:686: SyntaxWarning: invalid escape sequence '\S' _INDENT_RE = re.compile('^([ ]*)(?=\S)', re.MULTILINE) /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1021: SyntaxWarning: invalid escape sequence '\s' pat = re.compile('(^|.*:)\s*\w*("|\')') /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1430: SyntaxWarning: invalid escape sequence '\s' want = re.sub('(?m)^%s\s*?$' % re.escape(BLANKLINE_MARKER), /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1434: SyntaxWarning: invalid escape sequence '\s' got = re.sub('(?m)^\s*?$', '', got) /usr/lib/python3/dist-packages/nose/inspector.py:110: SyntaxWarning: invalid escape sequence '\ ' """Find lines in home that are inspectable. Setting up gfortran (4:13.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-pil:riscv64 (10.1.0-1) ... Setting up libopenblas-dev:riscv64 (0.3.24+ds-1) ... Setting up libpython3-all-dev:riscv64 (3.11.4-5ubuntu1) ... Setting up python3-pexpect (4.8.0-4ubuntu1) ... Setting up python3-zmq (24.0.1-4build2) ... Setting up python3-dev (3.11.4-5ubuntu1) ... Setting up python3.12-dev (3.12.0-1) ... Setting up python3-numpy (1:1.24.2-1ubuntu1) ... Setting up python3-lxml:riscv64 (4.9.3-1build1) ... Setting up python3-contourpy (1.0.7-1build2) ... Setting up libxss1:riscv64 (1:1.2.3-1build2) ... Setting up python3-spglib (2.0.2-1build4) ... Setting up dh-python (6.20231025) ... Setting up python3-all-dev (3.11.4-5ubuntu1) ... Setting up openssh-sftp-server (1:9.3p1-1ubuntu3) ... Setting up libxft2:riscv64 (2.3.6-1) ... Setting up openssh-server (1:9.3p1-1ubuntu3) ... Creating config file /etc/ssh/sshd_config with new version Creating SSH2 RSA key; this may take some time ... 3072 SHA256:f26QROPbPeeI9b/stFsG0cMD+1z8PeYT4c+hVi0fE40 root@riscv64-qemu-lgw01-074 (RSA) Creating SSH2 ECDSA key; this may take some time ... 256 SHA256:yUB8JgCLQSoaB0re8JFWn3mwPR67t9pXBAUwDGupNqE root@riscv64-qemu-lgw01-074 (ECDSA) Creating SSH2 ED25519 key; this may take some time ... 256 SHA256:WTpOwBt7ZaPrMZc59e0ryGtaidU/Ht/HnnVytr5hJKU root@riscv64-qemu-lgw01-074 (ED25519) Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Created symlink /etc/systemd/system/sockets.target.wants/ssh.socket → /lib/systemd/system/ssh.socket. Setting up libtk8.6:riscv64 (8.6.13-2) ... Setting up debhelper (13.11.7ubuntu1) ... Setting up python3-pythran (0.14.0+ds-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1build2) ... Setting up python3-scipy (1.10.1-5) ... Setting up blt (2.5.3+dfsg-4.1build2) ... Setting up python3-tk:riscv64 (3.11.5-1) ... Setting up python3-pil.imagetk:riscv64 (10.1.0-1) ... Setting up python3-fonttools (4.38.0-1build2) ... /usr/lib/python3/dist-packages/fontTools/cffLib/specializer.py:40: SyntaxWarning: invalid escape sequence '\_' """Takes a T2CharString program list and returns list of commands. Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1ubuntu3) ... Setting up python3-ase (3.22.1-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for systemd (253.5-1ubuntu7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.41-6ubuntu1 dpkg-dev_1.22.1ubuntu1 g++-13_13.2.0-6ubuntu1 gcc-13_13.2.0-6ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-6ubuntu1 libstdc++6_13.2.0-6ubuntu1 linux-libc-dev_6.5.0-9.9 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.6 apt-utils_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13build1 autotools-dev_20220109.1 base-files_13ubuntu4 base-passwd_3.6.2 bash_5.2.15-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41-6ubuntu1 binutils-common_2.41-6ubuntu1 binutils-riscv64-linux-gnu_2.41-6ubuntu1 blt_2.5.3+dfsg-4.1build2 bsdextrautils_2.39.1-4ubuntu2 bsdutils_1:2.39.1-4ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:13.2.0-1ubuntu1 cpp-13_13.2.0-6ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.7ubuntu1 debianutils_5.14 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_6.20231025 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.1ubuntu1 dpkg-dev_1.22.1ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig-config_2.14.2-4ubuntu1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3 fonts-lyx_2.3.7-1 g++_4:13.2.0-1ubuntu1 g++-13_13.2.0-6ubuntu1 gcc_4:13.2.0-1ubuntu1 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uuid-runtime_2.39.1-4ubuntu2 x11-common_1:7.7+23ubuntu2 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-1ubuntu5 zlib1g-dev_1:1.2.13.dfsg-1ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: amp Binary: python3-amp Architecture: any Version: 0.6.1-1build9 Maintainer: Debian Science Maintainers Uploaders: Muammar El Khatib Homepage: https://bitbucket.org/andrewpeterson/amp Standards-Version: 4.0.0 Vcs-Browser: https://salsa.debian.org/science-team/amp Vcs-Git: https://salsa.debian.org/science-team/amp.git Build-Depends: debhelper-compat (= 11), dh-python, gfortran, python3-all-dev, python3-ase (>= 3.9.0~), python3-matplotlib, python3-nose, python3-numpy, python3-scipy, python3-setuptools, python3-pexpect, python3-zmq, openssh-server Package-List: python3-amp deb science optional arch=any Checksums-Sha1: 5a5a3c352695c5e480e3abdf7d5c988d8ca40e61 3250424 amp_0.6.1.orig.tar.gz 44dd8ca215c55964c4f1714729c08b9f5d214e11 3724 amp_0.6.1-1build9.debian.tar.xz Checksums-Sha256: 0111cda57c55caa21529c1fae53625e6c9a9653434e0be8d54d6d1a46042116f 3250424 amp_0.6.1.orig.tar.gz 662c57e326ecd5ed27e5f47da0db1a9bd45f0aed2f0a5ba3d3e0e7d6defc32f6 3724 amp_0.6.1-1build9.debian.tar.xz Files: 8e5350ac9cc6d1857ade89d63cbbd825 3250424 amp_0.6.1.orig.tar.gz bdb693425876be7d34aa0a64f52e9247 3724 amp_0.6.1-1build9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAuFiEE1WVxuIqLuvFAv2PWvX6qYHePpvUFAmVDaowQHGRva29AdWJ1 bnR1LmNvbQAKCRC9fqpgd4+m9SaSD/9tkB3mhBtoPc/m+UQsLcCWv2DeNdumgDzr JZWMSwvvOSoOEXQuTzDLP6KZmHhhRlkC7Osug66s1r3qSEuLcOLkCva/YN08XCrP 0szALOEIErzhYqsMN+nCY9LWlyaohVkUbrkBAId5UI+gDgn8/qJMMsgzm/5Fy+o0 6Qj5RMGA/MxrgVpy2iogy+maqbqK1xvGl4zQzdTGcPrvDdo6Wi37pbctml5M3WUP Ocun33UbCb4RmSxlrqWjmnAer5UpXSTRxlQClNipG8HRhchMrnk8GQkESd/qMhBB 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dpkg-source: info: applying 03_tools.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26953643 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26953643 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26953643 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package amp dpkg-buildpackage: info: source version 0.6.1-1build9 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. 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Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. I: pybuild base:310: python3.12 setup.py clean /<>/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running clean removing '/<>/.pybuild/cpython3_3.12_amp/build' (and everything under it) 'build/bdist.linux-riscv64' does not exist -- can't clean it 'build/scripts.linux-riscv64-3.12' does not exist -- can't clean it I: pybuild base:310: python3.11 setup.py clean /<>/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running clean removing '/<>/.pybuild/cpython3_3.11_amp/build' (and everything under it) 'build/bdist.linux-riscv64' does not exist -- can't clean it 'build/scripts.linux-riscv64-3.11' does not exist -- can't clean it rm -rf amp.egg-info/ find . -name "*.json" -delete find . -name "*-train-log.txt" -delete find . -name "*.pyc" -delete find . -name "*.o" -delete find . -name "*.mod" -delete find . -name "*.so" -delete make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build-arch dh build-arch --with python3 --buildsystem=pybuild Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. 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Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:310: python3.12 setup.py config /<>/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running config I: pybuild base:310: python3.11 setup.py config /<>/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild pybuild:314: make -C amp python3.12 python3.11 make[1]: Entering directory '/<>/amp' Building for python3.12 (3.12) make -C model make[2]: Entering directory '/<>/amp/model' gfortran -c neuralnetwork.f90 cp neuralnetwork.mod .. make[2]: Leaving directory '/<>/amp/model' make -C descriptor make[2]: Entering directory '/<>/amp/descriptor' gfortran -c cutoffs.f90 cp cutoffs.mod .. make[2]: Leaving directory '/<>/amp/descriptor' f2py3.12 -c -m fmodules model.f90 descriptor/cutoffs.f90 descriptor/gaussian.f90 descriptor/zernike.f90 model/neuralnetwork.f90 running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "fmodules" sources INFO: f2py options: [] INFO: f2py:> /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c creating /tmp/tmpqt30w1za/src.linux-riscv64-3.12 rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'model.f90' (format:fix) ::image_forces ::integer_one_d_array ::embedded_real_one_one_d_array ::embedded_real_one_two_d_array ::embedded_integer_one_one_d_array ::embedded_one_one_two_d_array Reading file 'descriptor/cutoffs.f90' (format:fix) Reading file 'descriptor/gaussian.f90' (format:free) Reading file 'descriptor/zernike.f90' (format:free) Reading file 'model/neuralnetwork.f90' (format:fix) ::real_two_d_array ::element_parameters ::real_one_d_array Post-processing... Block: fmodules Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss In: :fmodules:model.f90:calculate_loss get_useparameters: no module neuralnetwork info used by calculate_loss Block: image_forces In: :fmodules:model.f90:calculate_loss:image_forces get_useparameters: no module neuralnetwork info used by image_forces Block: integer_one_d_array In: :fmodules:model.f90:calculate_loss:integer_one_d_array get_useparameters: no module neuralnetwork info used by integer_one_d_array Block: embedded_real_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_one_d_array Block: embedded_real_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_integer_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_one_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_one_one_two_d_array Block: deallocate_variables In: :fmodules:model.f90:deallocate_variables get_useparameters: no module neuralnetwork info used by deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Building modules... Building module "fmodules"... Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "check_version"... warning = check_version(version) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "deallocate_variables"... deallocate_variables() Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' f90mod_rules.buildhooks: skipping type real_two_d_array f90mod_rules.buildhooks: skipping type element_parameters f90mod_rules.buildhooks: skipping type real_one_d_array Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Wrote C/API module "fmodules" to file "/tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c" Fortran 90 wrappers are saved to "/tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90" INFO: adding '/tmp/tmpqt30w1za/src.linux-riscv64-3.12/fortranobject.c' to sources. INFO: adding '/tmp/tmpqt30w1za/src.linux-riscv64-3.12' to include_dirs. copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmpqt30w1za/src.linux-riscv64-3.12 copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmpqt30w1za/src.linux-riscv64-3.12 INFO: adding '/tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers.f' to sources. INFO: adding '/tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'fmodules' extension INFO: compiling C sources INFO: C compiler: riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmpqt30w1za/tmp creating /tmp/tmpqt30w1za/tmp/tmpqt30w1za creating /tmp/tmpqt30w1za/tmp/tmpqt30w1za/src.linux-riscv64-3.12 INFO: compile options: '-DNPY_DISABLE_OPTIMIZATION=1 -I/tmp/tmpqt30w1za/src.linux-riscv64-3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c' INFO: riscv64-linux-gnu-gcc: /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c INFO: riscv64-linux-gnu-gcc: /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fortranobject.c /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c: In function ‘f2py_setup_fingerprint_props’: /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4175:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4175 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4176:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4176 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4177:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4177 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c: In function ‘f2py_setup_images_props’: /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4231:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4231 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4232:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4232 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4233:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4233 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4234:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4234 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4235:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4235 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4236:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4236 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4237:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4237 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4239:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4239 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c: In function ‘f2py_setup_neuralnetwork’: /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4283:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4283 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4284:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4284 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4285:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4285 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.c:4286:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4286 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ INFO: compiling Fortran 90 module sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops creating /tmp/tmpqt30w1za/descriptor creating /tmp/tmpqt30w1za/model INFO: compile options: '-I/tmp/tmpqt30w1za/src.linux-riscv64-3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c' extra options: '-J/tmp/tmpqt30w1za/ -I/tmp/tmpqt30w1za/' INFO: gfortran:f90: model.f90 model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: gfortran:f90: descriptor/cutoffs.f90 INFO: gfortran:f90: model/neuralnetwork.f90 model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: compiling Fortran sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops INFO: compile options: '-I/tmp/tmpqt30w1za/src.linux-riscv64-3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c' extra options: '-J/tmp/tmpqt30w1za/ -I/tmp/tmpqt30w1za/' INFO: gfortran:f90: descriptor/gaussian.f90 INFO: gfortran:f90: descriptor/zernike.f90 INFO: gfortran:f90: /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90 /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:407:44: 407 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, r, rc,& | 1 ...... 431 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, cutoff& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:417:50: 417 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 1 ...... 440 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:591:63: 591 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 1 ...... 722 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 2 Warning: Type mismatch in argument 'calculate_atomic_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:652:9: 652 | &ers (calculate_datomicenergy_dparametersf2pywrap, symbol, len_of_f& | 1 ...... 775 | &ers (calculate_datomicenergy_dparametersf2pywrap, calculate_datomi& | 2 Warning: Type mismatch in argument 'calculate_datomicenergy_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:637:70: 637 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 1 ...... 762 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 2 Warning: Type mismatch in argument 'calculate_denergy_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:685:68: 685 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 1 ...... 804 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:670:69: 670 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 1 ...... 791 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:620:55: 620 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 1 ...... 747 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 2 Warning: Type mismatch in argument 'calculate_force' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:607:56: 607 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 1 ...... 736 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 2 Warning: Type mismatch in argument 'calculate_force_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:579:62: 579 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 1 ...... 712 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 2 Warning: Type mismatch in argument 'calculate_image_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘num_fingerprints_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprintprimes’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_energies’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_forces’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_numbers’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_positions’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘elements_numbers’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_images_atoms’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_neighbors’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘raveled_neighborlists’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘max_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘min_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_layers_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_nodes_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] INFO: gfortran:f77: /tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers.f INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared /tmp/tmpqt30w1za/tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodulesmodule.o /tmp/tmpqt30w1za/tmp/tmpqt30w1za/src.linux-riscv64-3.12/fortranobject.o /tmp/tmpqt30w1za/model.o /tmp/tmpqt30w1za/descriptor/cutoffs.o /tmp/tmpqt30w1za/model/neuralnetwork.o /tmp/tmpqt30w1za/descriptor/gaussian.o /tmp/tmpqt30w1za/descriptor/zernike.o /tmp/tmpqt30w1za/tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers.o /tmp/tmpqt30w1za/tmp/tmpqt30w1za/src.linux-riscv64-3.12/fmodules-f2pywrappers2.o -L/usr/lib/gcc/riscv64-linux-gnu/13 -L/usr/lib/gcc/riscv64-linux-gnu/13 -L/usr/lib/riscv64-linux-gnu -lgfortran -o ./fmodules.cpython-312-riscv64-linux-gnu.so Removing build directory /tmp/tmpqt30w1za Building for python3.11 (3.11) make -C model make[2]: Entering directory '/<>/amp/model' make[2]: 'neuralnetwork.mod' is up to date. make[2]: Leaving directory '/<>/amp/model' make -C descriptor make[2]: Entering directory '/<>/amp/descriptor' make[2]: 'cutoffs.mod' is up to date. make[2]: Leaving directory '/<>/amp/descriptor' f2py3.11 -c -m fmodules model.f90 descriptor/cutoffs.f90 descriptor/gaussian.f90 descriptor/zernike.f90 model/neuralnetwork.f90 running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "fmodules" sources INFO: f2py options: [] INFO: f2py:> /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c creating /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11 rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'model.f90' (format:fix) ::image_forces ::integer_one_d_array ::embedded_real_one_one_d_array ::embedded_real_one_two_d_array ::embedded_integer_one_one_d_array ::embedded_one_one_two_d_array Reading file 'descriptor/cutoffs.f90' (format:fix) Reading file 'descriptor/gaussian.f90' (format:free) Reading file 'descriptor/zernike.f90' (format:free) Reading file 'model/neuralnetwork.f90' (format:fix) ::real_two_d_array ::element_parameters ::real_one_d_array Post-processing... Block: fmodules Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss In: :fmodules:model.f90:calculate_loss get_useparameters: no module neuralnetwork info used by calculate_loss Block: image_forces In: :fmodules:model.f90:calculate_loss:image_forces get_useparameters: no module neuralnetwork info used by image_forces Block: integer_one_d_array In: :fmodules:model.f90:calculate_loss:integer_one_d_array get_useparameters: no module neuralnetwork info used by integer_one_d_array Block: embedded_real_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_one_d_array Block: embedded_real_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_integer_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_one_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_one_one_two_d_array Block: deallocate_variables In: :fmodules:model.f90:deallocate_variables get_useparameters: no module neuralnetwork info used by deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Building modules... Building module "fmodules"... Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "check_version"... warning = check_version(version) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "deallocate_variables"... deallocate_variables() Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' f90mod_rules.buildhooks: skipping type real_two_d_array f90mod_rules.buildhooks: skipping type element_parameters f90mod_rules.buildhooks: skipping type real_one_d_array Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Wrote C/API module "fmodules" to file "/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c" Fortran 90 wrappers are saved to "/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90" INFO: adding '/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fortranobject.c' to sources. INFO: adding '/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11' to include_dirs. copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11 copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11 INFO: adding '/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers.f' to sources. INFO: adding '/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'fmodules' extension INFO: compiling C sources INFO: C compiler: riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmpxjpj8ygs/tmp creating /tmp/tmpxjpj8ygs/tmp/tmpxjpj8ygs creating /tmp/tmpxjpj8ygs/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11 INFO: compile options: '-DNPY_DISABLE_OPTIMIZATION=1 -I/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' INFO: riscv64-linux-gnu-gcc: /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c INFO: riscv64-linux-gnu-gcc: /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fortranobject.c /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c: In function ‘f2py_setup_fingerprint_props’: /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4175:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4175 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4176:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4176 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4177:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4177 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c: In function ‘f2py_setup_images_props’: /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4231:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4231 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4232:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4232 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4233:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4233 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4234:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4234 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4235:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4235 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4236:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4236 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4237:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4237 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4239:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4239 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c: In function ‘f2py_setup_neuralnetwork’: /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4283:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4283 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4284:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4284 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4285:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4285 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.c:4286:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4286 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ INFO: compiling Fortran 90 module sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops creating /tmp/tmpxjpj8ygs/descriptor creating /tmp/tmpxjpj8ygs/model INFO: compile options: '-I/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' extra options: '-J/tmp/tmpxjpj8ygs/ -I/tmp/tmpxjpj8ygs/' INFO: gfortran:f90: model.f90 model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: gfortran:f90: descriptor/cutoffs.f90 INFO: gfortran:f90: model/neuralnetwork.f90 model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: compiling Fortran sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops INFO: compile options: '-I/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' extra options: '-J/tmp/tmpxjpj8ygs/ -I/tmp/tmpxjpj8ygs/' INFO: gfortran:f90: descriptor/gaussian.f90 INFO: gfortran:f90: descriptor/zernike.f90 INFO: gfortran:f90: /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90 /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:407:44: 407 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, r, rc,& | 1 ...... 431 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, cutoff& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:417:50: 417 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 1 ...... 440 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:591:63: 591 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 1 ...... 722 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 2 Warning: Type mismatch in argument 'calculate_atomic_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:652:9: 652 | &ers (calculate_datomicenergy_dparametersf2pywrap, symbol, len_of_f& | 1 ...... 775 | &ers (calculate_datomicenergy_dparametersf2pywrap, calculate_datomi& | 2 Warning: Type mismatch in argument 'calculate_datomicenergy_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:637:70: 637 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 1 ...... 762 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 2 Warning: Type mismatch in argument 'calculate_denergy_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:685:68: 685 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 1 ...... 804 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:670:69: 670 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 1 ...... 791 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:620:55: 620 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 1 ...... 747 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 2 Warning: Type mismatch in argument 'calculate_force' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:607:56: 607 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 1 ...... 736 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 2 Warning: Type mismatch in argument 'calculate_force_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:579:62: 579 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 1 ...... 712 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 2 Warning: Type mismatch in argument 'calculate_image_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘num_fingerprints_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprintprimes’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_energies’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_forces’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_numbers’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_positions’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘elements_numbers’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_images_atoms’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_neighbors’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘raveled_neighborlists’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘max_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘min_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_layers_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_nodes_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] INFO: gfortran:f77: /tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers.f INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared /tmp/tmpxjpj8ygs/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodulesmodule.o /tmp/tmpxjpj8ygs/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fortranobject.o /tmp/tmpxjpj8ygs/model.o /tmp/tmpxjpj8ygs/descriptor/cutoffs.o /tmp/tmpxjpj8ygs/model/neuralnetwork.o /tmp/tmpxjpj8ygs/descriptor/gaussian.o /tmp/tmpxjpj8ygs/descriptor/zernike.o /tmp/tmpxjpj8ygs/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers.o /tmp/tmpxjpj8ygs/tmp/tmpxjpj8ygs/src.linux-riscv64-3.11/fmodules-f2pywrappers2.o -L/usr/lib/gcc/riscv64-linux-gnu/13 -L/usr/lib/gcc/riscv64-linux-gnu/13 -L/usr/lib/riscv64-linux-gnu -lgfortran -o ./fmodules.cpython-311-riscv64-linux-gnu.so Removing build directory /tmp/tmpxjpj8ygs make[1]: Leaving directory '/<>/amp' I: pybuild base:310: /usr/bin/python3.12 setup.py build /<>/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "amp.fmodules" sources INFO: f2py options: [] INFO: f2py:> build/src.linux-riscv64-3.12/amp/fmodulesmodule.c creating build creating build/src.linux-riscv64-3.12 creating build/src.linux-riscv64-3.12/amp rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'amp/model/neuralnetwork.f90' (format:fix) ::real_two_d_array ::element_parameters ::real_one_d_array Reading file 'amp/descriptor/gaussian.f90' (format:free) Reading file 'amp/descriptor/cutoffs.f90' (format:fix) Reading file 'amp/descriptor/zernike.f90' (format:free) Reading file 'amp/model.f90' (format:fix) ::image_forces ::integer_one_d_array ::embedded_real_one_one_d_array ::embedded_real_one_two_d_array ::embedded_integer_one_one_d_array ::embedded_one_one_two_d_array Post-processing... Block: fmodules Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2 get_useparameters: no module cutoffs info used by calculate_g2 Block: calculate_g4 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4 get_useparameters: no module cutoffs info used by calculate_g4 Block: calculate_g2_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2_prime get_useparameters: no module cutoffs info used by calculate_g2_prime Block: calculate_g4_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4_prime get_useparameters: no module cutoffs info used by calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:amp/model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Building modules... Building module "fmodules"... Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "check_version"... warning = check_version(version) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "deallocate_variables"... deallocate_variables() Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' f90mod_rules.buildhooks: skipping type real_two_d_array f90mod_rules.buildhooks: skipping type element_parameters f90mod_rules.buildhooks: skipping type real_one_d_array Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Wrote C/API module "fmodules" to file "build/src.linux-riscv64-3.12/amp/fmodulesmodule.c" Fortran 90 wrappers are saved to "build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90" INFO: adding 'build/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12/amp/fortranobject.c' to sources. INFO: adding 'build/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12/amp' to include_dirs. creating build/src.linux-riscv64-3.12/build creating build/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12 creating build/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12/amp INFO: adding 'build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers.f' to sources. INFO: adding 'build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build_py creating /<>/.pybuild/cpython3_3.12_amp/build/amp copying amp/__init__.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp copying amp/utilities.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp copying amp/analysis.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp creating /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor copying amp/descriptor/__init__.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor copying amp/descriptor/gaussian.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor copying amp/descriptor/cutoffs.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor copying amp/descriptor/zernike.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor copying amp/descriptor/bispectrum.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor copying amp/descriptor/example.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor copying amp/descriptor/analysis.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor creating /<>/.pybuild/cpython3_3.12_amp/build/amp/regression copying amp/regression/__init__.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp/regression creating /<>/.pybuild/cpython3_3.12_amp/build/amp/model copying amp/model/__init__.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp/model copying amp/model/neuralnetwork.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp/model copying amp/model/__main__.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp/model copying amp/model/tflow.py -> /<>/.pybuild/cpython3_3.12_amp/build/amp/model copying amp/VERSION -> /<>/.pybuild/cpython3_3.12_amp/build/amp running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext WARN: CCompilerOpt.__init__[1016] : unable to detect CPU architecture which lead to disable the optimization. check dist_info:<< ('linux-riscv64', 'riscv64-linux-gnu-gcc', '-fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2') >> INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-march=native) INFO: C compiler: riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmppp2rxfco/usr creating /tmp/tmppp2rxfco/usr/lib creating /tmp/tmppp2rxfco/usr/lib/python3 creating /tmp/tmppp2rxfco/usr/lib/python3/dist-packages creating /tmp/tmppp2rxfco/usr/lib/python3/dist-packages/numpy creating /tmp/tmppp2rxfco/usr/lib/python3/dist-packages/numpy/distutils creating /tmp/tmppp2rxfco/usr/lib/python3/dist-packages/numpy/distutils/checks INFO: compile options: '-I/usr/include/python3.12 -c' extra options: '-march=native' WARN: CCompilerOpt.dist_test[630] : CCompilerOpt._dist_test_spawn[764] : Command (riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c /usr/lib/python3/dist-packages/numpy/distutils/checks/test_flags.c -o /tmp/tmppp2rxfco/usr/lib/python3/dist-packages/numpy/distutils/checks/test_flags.o -MMD -MF /tmp/tmppp2rxfco/usr/lib/python3/dist-packages/numpy/distutils/checks/test_flags.o.d -march=native) failed with exit status 1 output -> riscv64-linux-gnu-gcc: error: ‘-march=native’: ISA string must begin with rv32 or rv64 WARN: CCompilerOpt.cc_test_flags[1081] : testing failed INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-O3) INFO: C compiler: riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.12 -c' extra options: '-O3' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-Werror) INFO: C compiler: riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.12 -c' extra options: '-Werror' INFO: CCompilerOpt.__init__[1786] : check requested baseline INFO: CCompilerOpt.__init__[1795] : check requested dispatch-able features INFO: CCompilerOpt.__init__[1811] : initialize targets groups INFO: CCompilerOpt.__init__[1813] : parse target group simd_test INFO: CCompilerOpt._parse_target_tokens[2024] : skip targets (NEON VSX4 FMA4 (FMA3 AVX2) XOP AVX512_SKX VX ASIMD VSX2 VSX3 VXE2 SSE2 VSX AVX512F SSE42 VXE) not part of baseline or dispatch-able features INFO: CCompilerOpt.generate_dispatch_header[2357] : generate CPU dispatch header: (build/src.linux-riscv64-3.12/numpy/distutils/include/npy_cpu_dispatch_config.h) WARN: CCompilerOpt.generate_dispatch_header[2366] : dispatch header dir build/src.linux-riscv64-3.12/numpy/distutils/include does not exist, creating it INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'amp.fmodules' extension INFO: compiling C sources INFO: C compiler: riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build/temp.linux-riscv64-cpython-312/build creating build/temp.linux-riscv64-cpython-312/build/src.linux-riscv64-3.12 creating build/temp.linux-riscv64-cpython-312/build/src.linux-riscv64-3.12/amp creating build/temp.linux-riscv64-cpython-312/build/src.linux-riscv64-3.12/build creating build/temp.linux-riscv64-cpython-312/build/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12 creating build/temp.linux-riscv64-cpython-312/build/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12/amp INFO: compile options: '-Ibuild/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-riscv64-3.12/numpy/distutils/include -I/usr/include/python3.12 -c' INFO: riscv64-linux-gnu-gcc: build/src.linux-riscv64-3.12/amp/fmodulesmodule.c INFO: riscv64-linux-gnu-gcc: build/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12/amp/fortranobject.c build/src.linux-riscv64-3.12/amp/fmodulesmodule.c: In function ‘f2py_setup_neuralnetwork’: build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4185:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4185 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4186:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4186 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4187:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4187 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4188:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4188 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c: In function ‘f2py_setup_fingerprint_props’: build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4231:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4231 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4232:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4232 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4233:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4233 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c: In function ‘f2py_setup_images_props’: build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4287:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4287 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4288:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4288 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4289:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4289 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4290:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4290 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4291:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4291 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4292:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4292 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4293:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4293 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ build/src.linux-riscv64-3.12/amp/fmodulesmodule.c:4295:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4295 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ INFO: compiling Fortran 90 module sources creating build/temp.linux-riscv64-cpython-312/amp INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops creating build/temp.linux-riscv64-cpython-312/amp/model creating build/temp.linux-riscv64-cpython-312/amp/descriptor INFO: compile options: '-Ibuild/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-riscv64-3.12/numpy/distutils/include -I/usr/include/python3.12 -c' extra options: '-Jbuild/temp.linux-riscv64-cpython-312/amp -Ibuild/temp.linux-riscv64-cpython-312/amp' INFO: gfortran:f90: amp/model/neuralnetwork.f90 amp/model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: gfortran:f90: amp/descriptor/cutoffs.f90 INFO: gfortran:f90: amp/model.f90 amp/model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: compiling Fortran sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops INFO: compile options: '-Ibuild/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-riscv64-3.12/numpy/distutils/include -I/usr/include/python3.12 -c' extra options: '-Jbuild/temp.linux-riscv64-cpython-312/amp -Ibuild/temp.linux-riscv64-cpython-312/amp' INFO: gfortran:f90: amp/descriptor/gaussian.f90 INFO: gfortran:f90: amp/descriptor/zernike.f90 INFO: gfortran:f90: build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90 build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:141:63: 141 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 1 ...... 272 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 2 Warning: Type mismatch in argument 'calculate_atomic_energy' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:202:9: 202 | &ers (calculate_datomicenergy_dparametersf2pywrap, symbol, len_of_f& | 1 ...... 325 | &ers (calculate_datomicenergy_dparametersf2pywrap, calculate_datomi& | 2 Warning: Type mismatch in argument 'calculate_datomicenergy_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:187:70: 187 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 1 ...... 312 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 2 Warning: Type mismatch in argument 'calculate_denergy_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:235:68: 235 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 1 ...... 354 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:220:69: 220 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 1 ...... 341 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:170:55: 170 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 1 ...... 297 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 2 Warning: Type mismatch in argument 'calculate_force' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:157:56: 157 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 1 ...... 286 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 2 Warning: Type mismatch in argument 'calculate_force_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:129:62: 129 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 1 ...... 262 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 2 Warning: Type mismatch in argument 'calculate_image_energy' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:388:44: 388 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, r, rc,& | 1 ...... 412 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, cutoff& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:398:50: 398 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 1 ...... 421 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘max_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘min_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_layers_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_nodes_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘num_fingerprints_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprintprimes’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_energies’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_forces’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_numbers’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_positions’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘elements_numbers’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_images_atoms’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_neighbors’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘raveled_neighborlists’ which has been explicitly imported at (1) [-Wunused-variable] INFO: gfortran:f77: build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers.f INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared build/temp.linux-riscv64-cpython-312/build/src.linux-riscv64-3.12/amp/fmodulesmodule.o build/temp.linux-riscv64-cpython-312/build/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12/amp/fortranobject.o build/temp.linux-riscv64-cpython-312/amp/model/neuralnetwork.o build/temp.linux-riscv64-cpython-312/amp/descriptor/cutoffs.o build/temp.linux-riscv64-cpython-312/amp/model.o build/temp.linux-riscv64-cpython-312/amp/descriptor/gaussian.o build/temp.linux-riscv64-cpython-312/amp/descriptor/zernike.o build/temp.linux-riscv64-cpython-312/build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers.o build/temp.linux-riscv64-cpython-312/build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.o -L/usr/lib/gcc/riscv64-linux-gnu/13 -L/usr/lib/gcc/riscv64-linux-gnu/13 -L/usr/lib/riscv64-linux-gnu -lgfortran -o /<>/.pybuild/cpython3_3.12_amp/build/amp/fmodules.cpython-312-riscv64-linux-gnu.so INFO: ########### EXT COMPILER OPTIMIZATION ########### INFO: Platform : Architecture: unsupported Compiler : gcc CPU baseline : Requested : optimization disabled Enabled : none Flags : none Extra checks: none Requested : optimization disabled CPU dispatch : Enabled : none Generated : none INFO: CCompilerOpt.cache_flush[857] : write cache to path -> /<>/build/temp.linux-riscv64-cpython-312/ccompiler_opt_cache_ext.py I: pybuild pybuild:314: make -C amp python3.12 python3.11 make[1]: Entering directory '/<>/amp' Building for python3.12 (3.12) make -C model make[2]: Entering directory '/<>/amp/model' make[2]: 'neuralnetwork.mod' is up to date. make[2]: Leaving directory '/<>/amp/model' make -C descriptor make[2]: Entering directory '/<>/amp/descriptor' make[2]: 'cutoffs.mod' is up to date. make[2]: Leaving directory '/<>/amp/descriptor' f2py3.12 -c -m fmodules model.f90 descriptor/cutoffs.f90 descriptor/gaussian.f90 descriptor/zernike.f90 model/neuralnetwork.f90 running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "fmodules" sources INFO: f2py options: [] INFO: f2py:> /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c creating /tmp/tmp_mue41x5/src.linux-riscv64-3.12 rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'model.f90' (format:fix) ::image_forces ::integer_one_d_array ::embedded_real_one_one_d_array ::embedded_real_one_two_d_array ::embedded_integer_one_one_d_array ::embedded_one_one_two_d_array Reading file 'descriptor/cutoffs.f90' (format:fix) Reading file 'descriptor/gaussian.f90' (format:free) Reading file 'descriptor/zernike.f90' (format:free) Reading file 'model/neuralnetwork.f90' (format:fix) ::real_two_d_array ::element_parameters ::real_one_d_array Post-processing... Block: fmodules Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss In: :fmodules:model.f90:calculate_loss get_useparameters: no module neuralnetwork info used by calculate_loss Block: image_forces In: :fmodules:model.f90:calculate_loss:image_forces get_useparameters: no module neuralnetwork info used by image_forces Block: integer_one_d_array In: :fmodules:model.f90:calculate_loss:integer_one_d_array get_useparameters: no module neuralnetwork info used by integer_one_d_array Block: embedded_real_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_one_d_array Block: embedded_real_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_integer_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_one_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_one_one_two_d_array Block: deallocate_variables In: :fmodules:model.f90:deallocate_variables get_useparameters: no module neuralnetwork info used by deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Building modules... Building module "fmodules"... Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "check_version"... warning = check_version(version) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "deallocate_variables"... deallocate_variables() Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' f90mod_rules.buildhooks: skipping type real_two_d_array f90mod_rules.buildhooks: skipping type element_parameters f90mod_rules.buildhooks: skipping type real_one_d_array Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Wrote C/API module "fmodules" to file "/tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c" Fortran 90 wrappers are saved to "/tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90" INFO: adding '/tmp/tmp_mue41x5/src.linux-riscv64-3.12/fortranobject.c' to sources. INFO: adding '/tmp/tmp_mue41x5/src.linux-riscv64-3.12' to include_dirs. copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmp_mue41x5/src.linux-riscv64-3.12 copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmp_mue41x5/src.linux-riscv64-3.12 INFO: adding '/tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers.f' to sources. INFO: adding '/tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'fmodules' extension INFO: compiling C sources INFO: C compiler: riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmp_mue41x5/tmp creating /tmp/tmp_mue41x5/tmp/tmp_mue41x5 creating /tmp/tmp_mue41x5/tmp/tmp_mue41x5/src.linux-riscv64-3.12 INFO: compile options: '-DNPY_DISABLE_OPTIMIZATION=1 -I/tmp/tmp_mue41x5/src.linux-riscv64-3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c' INFO: riscv64-linux-gnu-gcc: /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c INFO: riscv64-linux-gnu-gcc: /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fortranobject.c /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c: In function ‘f2py_setup_fingerprint_props’: /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4175:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4175 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4176:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4176 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4177:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4177 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c: In function ‘f2py_setup_images_props’: /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4231:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4231 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4232:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4232 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4233:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4233 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4234:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4234 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4235:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4235 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4236:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4236 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4237:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4237 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4239:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4239 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c: In function ‘f2py_setup_neuralnetwork’: /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4283:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4283 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4284:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4284 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4285:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4285 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.c:4286:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4286 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ INFO: compiling Fortran 90 module sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops creating /tmp/tmp_mue41x5/descriptor creating /tmp/tmp_mue41x5/model INFO: compile options: '-I/tmp/tmp_mue41x5/src.linux-riscv64-3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c' extra options: '-J/tmp/tmp_mue41x5/ -I/tmp/tmp_mue41x5/' INFO: gfortran:f90: model.f90 model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: gfortran:f90: descriptor/cutoffs.f90 INFO: gfortran:f90: model/neuralnetwork.f90 model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: compiling Fortran sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops INFO: compile options: '-I/tmp/tmp_mue41x5/src.linux-riscv64-3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c' extra options: '-J/tmp/tmp_mue41x5/ -I/tmp/tmp_mue41x5/' INFO: gfortran:f90: descriptor/gaussian.f90 INFO: gfortran:f90: descriptor/zernike.f90 INFO: gfortran:f90: /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90 /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:407:44: 407 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, r, rc,& | 1 ...... 431 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, cutoff& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:417:50: 417 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 1 ...... 440 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:591:63: 591 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 1 ...... 722 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 2 Warning: Type mismatch in argument 'calculate_atomic_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:652:9: 652 | &ers (calculate_datomicenergy_dparametersf2pywrap, symbol, len_of_f& | 1 ...... 775 | &ers (calculate_datomicenergy_dparametersf2pywrap, calculate_datomi& | 2 Warning: Type mismatch in argument 'calculate_datomicenergy_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:637:70: 637 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 1 ...... 762 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 2 Warning: Type mismatch in argument 'calculate_denergy_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:685:68: 685 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 1 ...... 804 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:670:69: 670 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 1 ...... 791 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:620:55: 620 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 1 ...... 747 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 2 Warning: Type mismatch in argument 'calculate_force' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:607:56: 607 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 1 ...... 736 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 2 Warning: Type mismatch in argument 'calculate_force_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:579:62: 579 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 1 ...... 712 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 2 Warning: Type mismatch in argument 'calculate_image_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘num_fingerprints_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprintprimes’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_energies’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_forces’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_numbers’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_positions’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘elements_numbers’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_images_atoms’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_neighbors’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘raveled_neighborlists’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘max_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘min_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_layers_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_nodes_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] INFO: gfortran:f77: /tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers.f INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared /tmp/tmp_mue41x5/tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodulesmodule.o /tmp/tmp_mue41x5/tmp/tmp_mue41x5/src.linux-riscv64-3.12/fortranobject.o /tmp/tmp_mue41x5/model.o /tmp/tmp_mue41x5/descriptor/cutoffs.o /tmp/tmp_mue41x5/model/neuralnetwork.o /tmp/tmp_mue41x5/descriptor/gaussian.o /tmp/tmp_mue41x5/descriptor/zernike.o /tmp/tmp_mue41x5/tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers.o /tmp/tmp_mue41x5/tmp/tmp_mue41x5/src.linux-riscv64-3.12/fmodules-f2pywrappers2.o -L/usr/lib/gcc/riscv64-linux-gnu/13 -L/usr/lib/gcc/riscv64-linux-gnu/13 -L/usr/lib/riscv64-linux-gnu -lgfortran -o /<>/.pybuild/cpython3_3.12_amp/build/fmodules.cpython-312-riscv64-linux-gnu.so Removing build directory /tmp/tmp_mue41x5 Building for python3.11 (3.11) make -C model make[2]: Entering directory '/<>/amp/model' make[2]: 'neuralnetwork.mod' is up to date. make[2]: Leaving directory '/<>/amp/model' make -C descriptor make[2]: Entering directory '/<>/amp/descriptor' make[2]: 'cutoffs.mod' is up to date. make[2]: Leaving directory '/<>/amp/descriptor' f2py3.11 -c -m fmodules model.f90 descriptor/cutoffs.f90 descriptor/gaussian.f90 descriptor/zernike.f90 model/neuralnetwork.f90 running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "fmodules" sources INFO: f2py options: [] INFO: f2py:> /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c creating /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11 rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'model.f90' (format:fix) ::image_forces ::integer_one_d_array ::embedded_real_one_one_d_array ::embedded_real_one_two_d_array ::embedded_integer_one_one_d_array ::embedded_one_one_two_d_array Reading file 'descriptor/cutoffs.f90' (format:fix) Reading file 'descriptor/gaussian.f90' (format:free) Reading file 'descriptor/zernike.f90' (format:free) Reading file 'model/neuralnetwork.f90' (format:fix) ::real_two_d_array ::element_parameters ::real_one_d_array Post-processing... Block: fmodules Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss In: :fmodules:model.f90:calculate_loss get_useparameters: no module neuralnetwork info used by calculate_loss Block: image_forces In: :fmodules:model.f90:calculate_loss:image_forces get_useparameters: no module neuralnetwork info used by image_forces Block: integer_one_d_array In: :fmodules:model.f90:calculate_loss:integer_one_d_array get_useparameters: no module neuralnetwork info used by integer_one_d_array Block: embedded_real_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_one_d_array Block: embedded_real_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_integer_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_one_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_one_one_two_d_array Block: deallocate_variables In: :fmodules:model.f90:deallocate_variables get_useparameters: no module neuralnetwork info used by deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Building modules... Building module "fmodules"... Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "check_version"... warning = check_version(version) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "deallocate_variables"... deallocate_variables() Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' f90mod_rules.buildhooks: skipping type real_two_d_array f90mod_rules.buildhooks: skipping type element_parameters f90mod_rules.buildhooks: skipping type real_one_d_array Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Wrote C/API module "fmodules" to file "/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c" Fortran 90 wrappers are saved to "/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90" INFO: adding '/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fortranobject.c' to sources. INFO: adding '/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11' to include_dirs. copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11 copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11 INFO: adding '/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers.f' to sources. INFO: adding '/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'fmodules' extension INFO: compiling C sources INFO: C compiler: riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmp0rrw0gjj/tmp creating /tmp/tmp0rrw0gjj/tmp/tmp0rrw0gjj creating /tmp/tmp0rrw0gjj/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11 INFO: compile options: '-DNPY_DISABLE_OPTIMIZATION=1 -I/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' INFO: riscv64-linux-gnu-gcc: /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fortranobject.c INFO: riscv64-linux-gnu-gcc: /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c: In function ‘f2py_setup_fingerprint_props’: /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4175:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4175 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4176:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4176 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4177:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4177 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c: In function ‘f2py_setup_images_props’: /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4231:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4231 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4232:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4232 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4233:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4233 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4234:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4234 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4235:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4235 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4236:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4236 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4237:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4237 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4239:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4239 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c: In function ‘f2py_setup_neuralnetwork’: /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4283:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4283 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4284:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4284 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4285:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4285 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.c:4286:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4286 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ INFO: compiling Fortran 90 module sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops creating /tmp/tmp0rrw0gjj/descriptor creating /tmp/tmp0rrw0gjj/model INFO: compile options: '-I/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' extra options: '-J/tmp/tmp0rrw0gjj/ -I/tmp/tmp0rrw0gjj/' INFO: gfortran:f90: model.f90 model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: gfortran:f90: descriptor/cutoffs.f90 INFO: gfortran:f90: model/neuralnetwork.f90 model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: compiling Fortran sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops INFO: compile options: '-I/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' extra options: '-J/tmp/tmp0rrw0gjj/ -I/tmp/tmp0rrw0gjj/' INFO: gfortran:f90: descriptor/gaussian.f90 INFO: gfortran:f90: descriptor/zernike.f90 INFO: gfortran:f90: /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90 /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:407:44: 407 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, r, rc,& | 1 ...... 431 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, cutoff& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:417:50: 417 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 1 ...... 440 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:591:63: 591 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 1 ...... 722 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 2 Warning: Type mismatch in argument 'calculate_atomic_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:652:9: 652 | &ers (calculate_datomicenergy_dparametersf2pywrap, symbol, len_of_f& | 1 ...... 775 | &ers (calculate_datomicenergy_dparametersf2pywrap, calculate_datomi& | 2 Warning: Type mismatch in argument 'calculate_datomicenergy_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:637:70: 637 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 1 ...... 762 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 2 Warning: Type mismatch in argument 'calculate_denergy_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:685:68: 685 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 1 ...... 804 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:670:69: 670 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 1 ...... 791 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:620:55: 620 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 1 ...... 747 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 2 Warning: Type mismatch in argument 'calculate_force' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:607:56: 607 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 1 ...... 736 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 2 Warning: Type mismatch in argument 'calculate_force_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:579:62: 579 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 1 ...... 712 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 2 Warning: Type mismatch in argument 'calculate_image_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘num_fingerprints_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprintprimes’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_energies’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_forces’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_numbers’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_positions’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘elements_numbers’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_images_atoms’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_neighbors’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘raveled_neighborlists’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘max_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘min_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_layers_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_nodes_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] INFO: gfortran:f77: /tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers.f INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared /tmp/tmp0rrw0gjj/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodulesmodule.o /tmp/tmp0rrw0gjj/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fortranobject.o /tmp/tmp0rrw0gjj/model.o /tmp/tmp0rrw0gjj/descriptor/cutoffs.o /tmp/tmp0rrw0gjj/model/neuralnetwork.o /tmp/tmp0rrw0gjj/descriptor/gaussian.o /tmp/tmp0rrw0gjj/descriptor/zernike.o /tmp/tmp0rrw0gjj/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers.o /tmp/tmp0rrw0gjj/tmp/tmp0rrw0gjj/src.linux-riscv64-3.11/fmodules-f2pywrappers2.o -L/usr/lib/gcc/riscv64-linux-gnu/13 -L/usr/lib/gcc/riscv64-linux-gnu/13 -L/usr/lib/riscv64-linux-gnu -lgfortran -o /<>/.pybuild/cpython3_3.12_amp/build/fmodules.cpython-311-riscv64-linux-gnu.so Removing build directory /tmp/tmp0rrw0gjj make[1]: Leaving directory '/<>/amp' I: pybuild base:310: /usr/bin/python3 setup.py build /<>/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "amp.fmodules" sources INFO: f2py options: [] INFO: f2py:> build/src.linux-riscv64-3.11/amp/fmodulesmodule.c creating build/src.linux-riscv64-3.11 creating build/src.linux-riscv64-3.11/amp rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'amp/model/neuralnetwork.f90' (format:fix) ::real_two_d_array ::element_parameters ::real_one_d_array Reading file 'amp/descriptor/gaussian.f90' (format:free) Reading file 'amp/descriptor/cutoffs.f90' (format:fix) Reading file 'amp/descriptor/zernike.f90' (format:free) Reading file 'amp/model.f90' (format:fix) ::image_forces ::integer_one_d_array ::embedded_real_one_one_d_array ::embedded_real_one_two_d_array ::embedded_integer_one_one_d_array ::embedded_one_one_two_d_array Post-processing... Block: fmodules Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2 get_useparameters: no module cutoffs info used by calculate_g2 Block: calculate_g4 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4 get_useparameters: no module cutoffs info used by calculate_g4 Block: calculate_g2_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2_prime get_useparameters: no module cutoffs info used by calculate_g2_prime Block: calculate_g4_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4_prime get_useparameters: no module cutoffs info used by calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:amp/model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Building modules... Building module "fmodules"... Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "check_version"... warning = check_version(version) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "deallocate_variables"... deallocate_variables() Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' f90mod_rules.buildhooks: skipping type real_two_d_array f90mod_rules.buildhooks: skipping type element_parameters f90mod_rules.buildhooks: skipping type real_one_d_array Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Wrote C/API module "fmodules" to file "build/src.linux-riscv64-3.11/amp/fmodulesmodule.c" Fortran 90 wrappers are saved to "build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90" INFO: adding 'build/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11/amp/fortranobject.c' to sources. INFO: adding 'build/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11/amp' to include_dirs. creating build/src.linux-riscv64-3.11/build creating build/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11 creating build/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11/amp INFO: adding 'build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers.f' to sources. INFO: adding 'build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build_py creating /<>/.pybuild/cpython3_3.11_amp/build/amp copying amp/__init__.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp copying amp/utilities.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp copying amp/analysis.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp creating /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/__init__.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/gaussian.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/cutoffs.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/zernike.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/bispectrum.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/example.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/analysis.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor creating /<>/.pybuild/cpython3_3.11_amp/build/amp/regression copying amp/regression/__init__.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp/regression creating /<>/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/__init__.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/neuralnetwork.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/__main__.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/tflow.py -> /<>/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/VERSION -> /<>/.pybuild/cpython3_3.11_amp/build/amp running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext WARN: CCompilerOpt.__init__[1016] : unable to detect CPU architecture which lead to disable the optimization. check dist_info:<< ('linux-riscv64', 'riscv64-linux-gnu-gcc', '-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2') >> INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-march=native) INFO: C compiler: riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmp_zsxrxlh/usr creating /tmp/tmp_zsxrxlh/usr/lib creating /tmp/tmp_zsxrxlh/usr/lib/python3 creating /tmp/tmp_zsxrxlh/usr/lib/python3/dist-packages creating /tmp/tmp_zsxrxlh/usr/lib/python3/dist-packages/numpy creating /tmp/tmp_zsxrxlh/usr/lib/python3/dist-packages/numpy/distutils creating /tmp/tmp_zsxrxlh/usr/lib/python3/dist-packages/numpy/distutils/checks INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-march=native' WARN: CCompilerOpt.dist_test[630] : CCompilerOpt._dist_test_spawn[764] : Command (riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c /usr/lib/python3/dist-packages/numpy/distutils/checks/test_flags.c -o /tmp/tmp_zsxrxlh/usr/lib/python3/dist-packages/numpy/distutils/checks/test_flags.o -MMD -MF /tmp/tmp_zsxrxlh/usr/lib/python3/dist-packages/numpy/distutils/checks/test_flags.o.d -march=native) failed with exit status 1 output -> riscv64-linux-gnu-gcc: error: ‘-march=native’: ISA string must begin with rv32 or rv64 WARN: CCompilerOpt.cc_test_flags[1081] : testing failed INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-O3) INFO: C compiler: riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-O3' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-Werror) INFO: C compiler: riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-Werror' INFO: CCompilerOpt.__init__[1786] : check requested baseline INFO: CCompilerOpt.__init__[1795] : check requested dispatch-able features INFO: CCompilerOpt.__init__[1811] : initialize targets groups INFO: CCompilerOpt.__init__[1813] : parse target group simd_test INFO: CCompilerOpt._parse_target_tokens[2024] : skip targets (VSX2 XOP VSX VSX4 VXE2 AVX512F ASIMD VSX3 FMA4 SSE42 SSE2 NEON AVX512_SKX VXE (FMA3 AVX2) VX) not part of baseline or dispatch-able features INFO: CCompilerOpt.generate_dispatch_header[2357] : generate CPU dispatch header: (build/src.linux-riscv64-3.11/numpy/distutils/include/npy_cpu_dispatch_config.h) WARN: CCompilerOpt.generate_dispatch_header[2366] : dispatch header dir build/src.linux-riscv64-3.11/numpy/distutils/include does not exist, creating it INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'amp.fmodules' extension INFO: compiling C sources INFO: C compiler: riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build/temp.linux-riscv64-cpython-311/build creating build/temp.linux-riscv64-cpython-311/build/src.linux-riscv64-3.11 creating build/temp.linux-riscv64-cpython-311/build/src.linux-riscv64-3.11/amp creating build/temp.linux-riscv64-cpython-311/build/src.linux-riscv64-3.11/build creating build/temp.linux-riscv64-cpython-311/build/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11 creating build/temp.linux-riscv64-cpython-311/build/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11/amp INFO: compile options: '-Ibuild/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-riscv64-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' INFO: riscv64-linux-gnu-gcc: build/src.linux-riscv64-3.11/amp/fmodulesmodule.c INFO: riscv64-linux-gnu-gcc: build/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11/amp/fortranobject.c build/src.linux-riscv64-3.11/amp/fmodulesmodule.c: In function ‘f2py_setup_neuralnetwork’: build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4185:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4185 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4186:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4186 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4187:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4187 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4188:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4188 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c: In function ‘f2py_setup_fingerprint_props’: build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4231:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4231 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4232:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4232 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4233:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4233 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c: In function ‘f2py_setup_images_props’: build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4287:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4287 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4288:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4288 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4289:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4289 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4290:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4290 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4291:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4291 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4292:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4292 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4293:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4293 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ build/src.linux-riscv64-3.11/amp/fmodulesmodule.c:4295:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4295 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ INFO: compiling Fortran 90 module sources creating build/temp.linux-riscv64-cpython-311/amp INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops creating build/temp.linux-riscv64-cpython-311/amp/model creating build/temp.linux-riscv64-cpython-311/amp/descriptor INFO: compile options: '-Ibuild/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-riscv64-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' extra options: '-Jbuild/temp.linux-riscv64-cpython-311/amp -Ibuild/temp.linux-riscv64-cpython-311/amp' INFO: gfortran:f90: amp/model/neuralnetwork.f90 amp/model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: gfortran:f90: amp/descriptor/cutoffs.f90 INFO: gfortran:f90: amp/model.f90 amp/model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: compiling Fortran sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9 -fPIC -O3 -funroll-loops INFO: compile options: '-Ibuild/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-riscv64-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' extra options: '-Jbuild/temp.linux-riscv64-cpython-311/amp -Ibuild/temp.linux-riscv64-cpython-311/amp' INFO: gfortran:f90: amp/descriptor/gaussian.f90 INFO: gfortran:f90: amp/descriptor/zernike.f90 INFO: gfortran:f90: build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90 build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:141:63: 141 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 1 ...... 272 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 2 Warning: Type mismatch in argument 'calculate_atomic_energy' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:202:9: 202 | &ers (calculate_datomicenergy_dparametersf2pywrap, symbol, len_of_f& | 1 ...... 325 | &ers (calculate_datomicenergy_dparametersf2pywrap, calculate_datomi& | 2 Warning: Type mismatch in argument 'calculate_datomicenergy_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:187:70: 187 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 1 ...... 312 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 2 Warning: Type mismatch in argument 'calculate_denergy_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:235:68: 235 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 1 ...... 354 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:220:69: 220 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 1 ...... 341 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:170:55: 170 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 1 ...... 297 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 2 Warning: Type mismatch in argument 'calculate_force' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:157:56: 157 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 1 ...... 286 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 2 Warning: Type mismatch in argument 'calculate_force_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:129:62: 129 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 1 ...... 262 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 2 Warning: Type mismatch in argument 'calculate_image_energy' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:388:44: 388 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, r, rc,& | 1 ...... 412 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, cutoff& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:398:50: 398 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 1 ...... 421 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘max_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘min_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_layers_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_nodes_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘num_fingerprints_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprintprimes’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_energies’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_forces’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_numbers’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_positions’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘elements_numbers’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_images_atoms’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_neighbors’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘raveled_neighborlists’ which has been explicitly imported at (1) [-Wunused-variable] INFO: gfortran:f77: build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers.f INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared build/temp.linux-riscv64-cpython-311/build/src.linux-riscv64-3.11/amp/fmodulesmodule.o build/temp.linux-riscv64-cpython-311/build/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11/amp/fortranobject.o build/temp.linux-riscv64-cpython-311/amp/model/neuralnetwork.o build/temp.linux-riscv64-cpython-311/amp/descriptor/cutoffs.o build/temp.linux-riscv64-cpython-311/amp/model.o build/temp.linux-riscv64-cpython-311/amp/descriptor/gaussian.o build/temp.linux-riscv64-cpython-311/amp/descriptor/zernike.o build/temp.linux-riscv64-cpython-311/build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers.o build/temp.linux-riscv64-cpython-311/build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.o -L/usr/lib/gcc/riscv64-linux-gnu/13 -L/usr/lib/gcc/riscv64-linux-gnu/13 -L/usr/lib/riscv64-linux-gnu -lgfortran -o /<>/.pybuild/cpython3_3.11_amp/build/amp/fmodules.cpython-311-riscv64-linux-gnu.so INFO: ########### EXT COMPILER OPTIMIZATION ########### INFO: Platform : Architecture: unsupported Compiler : gcc CPU baseline : Requested : optimization disabled Enabled : none Flags : none Extra checks: none Requested : optimization disabled CPU dispatch : Enabled : none Generated : none INFO: CCompilerOpt.cache_flush[857] : write cache to path -> /<>/build/temp.linux-riscv64-cpython-311/ccompiler_opt_cache_ext.py debian/rules override_dh_auto_test make[1]: Entering directory '/<>' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="cd {build_dir}; {interpreter} /usr/bin/nosetests3 tests" \ dh_auto_test Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-amp/ -a -O--buildsystem=pybuild I: pybuild base:310: /usr/bin/python3.12 setup.py install --root /<>/debian/python3-amp /<>/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "amp.fmodules" sources INFO: f2py options: [] INFO: adding 'build/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12/amp/fortranobject.c' to sources. INFO: adding 'build/src.linux-riscv64-3.12/build/src.linux-riscv64-3.12/amp' to include_dirs. INFO: adding 'build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers.f' to sources. INFO: adding 'build/src.linux-riscv64-3.12/amp/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files running build_py running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: CCompilerOpt.__init__[813] : load cache from file -> /<>/build/temp.linux-riscv64-cpython-312/ccompiler_opt_cache_ext.py INFO: CCompilerOpt.__init__[824] : hit the file cache INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext running install_lib creating /<>/debian/python3-amp/usr creating /<>/debian/python3-amp/usr/lib creating /<>/debian/python3-amp/usr/lib/python3.12 creating /<>/debian/python3-amp/usr/lib/python3.12/dist-packages creating /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp copying /<>/.pybuild/cpython3_3.12_amp/build/amp/__init__.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp creating /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/regression copying /<>/.pybuild/cpython3_3.12_amp/build/amp/regression/__init__.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/regression copying /<>/.pybuild/cpython3_3.12_amp/build/amp/fmodules.cpython-312-riscv64-linux-gnu.so -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp copying /<>/.pybuild/cpython3_3.12_amp/build/amp/utilities.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp creating /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/model copying /<>/.pybuild/cpython3_3.12_amp/build/amp/model/__init__.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/model copying /<>/.pybuild/cpython3_3.12_amp/build/amp/model/neuralnetwork.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/model copying /<>/.pybuild/cpython3_3.12_amp/build/amp/model/__main__.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/model copying /<>/.pybuild/cpython3_3.12_amp/build/amp/model/tflow.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/model creating /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor/__init__.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor/gaussian.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor/cutoffs.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor/zernike.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor/bispectrum.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor/example.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.12_amp/build/amp/descriptor/analysis.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.12_amp/build/amp/VERSION -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp copying /<>/.pybuild/cpython3_3.12_amp/build/amp/analysis.py -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp copying /<>/.pybuild/cpython3_3.12_amp/build/fmodules.cpython-312-riscv64-linux-gnu.so -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12_amp/build/fmodules.cpython-311-riscv64-linux-gnu.so -> /<>/debian/python3-amp/usr/lib/python3.12/dist-packages byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/utilities.py to utilities.cpython-312.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/model/neuralnetwork.py to neuralnetwork.cpython-312.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/model/__main__.py to __main__.cpython-312.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/model/tflow.py to tflow.cpython-312.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor/gaussian.py to gaussian.cpython-312.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor/cutoffs.py to cutoffs.cpython-312.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor/zernike.py to zernike.cpython-312.pyc /usr/lib/python3.12/dist-packages/amp/descriptor/zernike.py:19: SyntaxWarning: invalid escape sequence '\e' /usr/lib/python3.12/dist-packages/amp/descriptor/zernike.py:569: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib/python3.12/dist-packages/amp/descriptor/zernike.py:571: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor/bispectrum.py to bispectrum.cpython-312.pyc /usr/lib/python3.12/dist-packages/amp/descriptor/bispectrum.py:398: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib/python3.12/dist-packages/amp/descriptor/bispectrum.py:400: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor/example.py to example.cpython-312.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/descriptor/analysis.py to analysis.cpython-312.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp/analysis.py to analysis.cpython-312.pyc running install_egg_info running egg_info creating amp_atomistics.egg-info writing amp_atomistics.egg-info/PKG-INFO writing dependency_links to amp_atomistics.egg-info/dependency_links.txt writing requirements to amp_atomistics.egg-info/requires.txt writing top-level names to amp_atomistics.egg-info/top_level.txt writing manifest file 'amp_atomistics.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/sdist.py:126: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`. !! ******************************************************************************** Custom 'build_py' does not implement 'get_data_files_without_manifest'. Please extend command classes from setuptools instead of distutils. See https://peps.python.org/pep-0632/ for details. ******************************************************************************** !! self._add_data_files(self._safe_data_files(build_py)) reading manifest file 'amp_atomistics.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'amp_atomistics.egg-info/SOURCES.txt' Copying amp_atomistics.egg-info to /<>/debian/python3-amp/usr/lib/python3.12/dist-packages/amp_atomistics-0.6.1.egg-info Skipping SOURCES.txt running install_scripts running install_clib INFO: customize UnixCCompiler INFO: ########### EXT COMPILER OPTIMIZATION ########### INFO: Platform : Architecture: unsupported Compiler : gcc CPU baseline : Requested : optimization disabled Enabled : none Flags : none Extra checks: none Requested : optimization disabled CPU dispatch : Enabled : none Generated : none INFO: CCompilerOpt.cache_flush[857] : write cache to path -> /<>/build/temp.linux-riscv64-cpython-312/ccompiler_opt_cache_ext.py I: pybuild pybuild:340: cp -r '/<>/tests' '/<>/debian/python3-amp//usr/lib/python3.12/dist-packages/amp' I: pybuild base:310: /usr/bin/python3 setup.py install --root /<>/debian/python3-amp /<>/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "amp.fmodules" sources INFO: f2py options: [] INFO: adding 'build/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11/amp/fortranobject.c' to sources. INFO: adding 'build/src.linux-riscv64-3.11/build/src.linux-riscv64-3.11/amp' to include_dirs. INFO: adding 'build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers.f' to sources. INFO: adding 'build/src.linux-riscv64-3.11/amp/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files running build_py running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: CCompilerOpt.__init__[813] : load cache from file -> /<>/build/temp.linux-riscv64-cpython-311/ccompiler_opt_cache_ext.py INFO: CCompilerOpt.__init__[824] : hit the file cache INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext running install_lib creating /<>/debian/python3-amp/usr/lib/python3.11 creating /<>/debian/python3-amp/usr/lib/python3.11/dist-packages creating /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp copying /<>/.pybuild/cpython3_3.11_amp/build/amp/__init__.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp creating /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/regression copying /<>/.pybuild/cpython3_3.11_amp/build/amp/regression/__init__.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/regression copying /<>/.pybuild/cpython3_3.11_amp/build/amp/utilities.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp creating /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /<>/.pybuild/cpython3_3.11_amp/build/amp/model/__init__.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /<>/.pybuild/cpython3_3.11_amp/build/amp/model/neuralnetwork.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /<>/.pybuild/cpython3_3.11_amp/build/amp/model/__main__.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /<>/.pybuild/cpython3_3.11_amp/build/amp/model/tflow.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model creating /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor/__init__.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor/gaussian.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor/cutoffs.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor/zernike.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor/bispectrum.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor/example.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.11_amp/build/amp/descriptor/analysis.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /<>/.pybuild/cpython3_3.11_amp/build/amp/VERSION -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp copying /<>/.pybuild/cpython3_3.11_amp/build/amp/fmodules.cpython-311-riscv64-linux-gnu.so -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp copying /<>/.pybuild/cpython3_3.11_amp/build/amp/analysis.py -> /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/regression/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/utilities.py to utilities.cpython-311.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/neuralnetwork.py to neuralnetwork.cpython-311.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/__main__.py to __main__.cpython-311.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/tflow.py to tflow.cpython-311.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/gaussian.py to gaussian.cpython-311.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/cutoffs.py to cutoffs.cpython-311.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/zernike.py to zernike.cpython-311.pyc /usr/lib/python3.11/dist-packages/amp/descriptor/zernike.py:569: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/dist-packages/amp/descriptor/zernike.py:571: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/bispectrum.py to bispectrum.cpython-311.pyc /usr/lib/python3.11/dist-packages/amp/descriptor/bispectrum.py:398: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/dist-packages/amp/descriptor/bispectrum.py:400: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/example.py to example.cpython-311.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/analysis.py to analysis.cpython-311.pyc byte-compiling /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/analysis.py to analysis.cpython-311.pyc running install_egg_info running egg_info writing amp_atomistics.egg-info/PKG-INFO writing dependency_links to amp_atomistics.egg-info/dependency_links.txt writing requirements to amp_atomistics.egg-info/requires.txt writing top-level names to amp_atomistics.egg-info/top_level.txt /usr/lib/python3/dist-packages/setuptools/command/sdist.py:126: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`. !! ******************************************************************************** Custom 'build_py' does not implement 'get_data_files_without_manifest'. Please extend command classes from setuptools instead of distutils. See https://peps.python.org/pep-0632/ for details. ******************************************************************************** !! self._add_data_files(self._safe_data_files(build_py)) reading manifest file 'amp_atomistics.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'amp_atomistics.egg-info/SOURCES.txt' Copying amp_atomistics.egg-info to /<>/debian/python3-amp/usr/lib/python3.11/dist-packages/amp_atomistics-0.6.1.egg-info Skipping SOURCES.txt running install_scripts running install_clib INFO: customize UnixCCompiler INFO: ########### EXT COMPILER OPTIMIZATION ########### INFO: Platform : Architecture: unsupported Compiler : gcc CPU baseline : Requested : optimization disabled Enabled : none Flags : none Extra checks: none Requested : optimization disabled CPU dispatch : Enabled : none Generated : none INFO: CCompilerOpt.cache_flush[857] : write cache to path -> /<>/build/temp.linux-riscv64-cpython-311/ccompiler_opt_cache_ext.py I: pybuild pybuild:340: cp -r '/<>/tests' '/<>/debian/python3-amp//usr/lib/python3.11/dist-packages/amp' dh_install -a -O--buildsystem=pybuild dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/<>' dh_python3 Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. W: dh_python3 fs:131: Paths differ: debian/python3-amp/usr/lib/python3.11/dist-packages/amp/fmodules.cpython-311-riscv64-linux-gnu.so and debian/python3-amp/usr/lib/python3/dist-packages/amp/fmodules.cpython-311-riscv64-linux-gnu.so W: dh_python3 fs:131: Paths differ: debian/python3-amp/usr/lib/python3.12/dist-packages/amp/fmodules.cpython-312-riscv64-linux-gnu.so and debian/python3-amp/usr/lib/python3/dist-packages/amp/fmodules.cpython-312-riscv64-linux-gnu.so I: dh_python3 tools:114: replacing shebang in debian/python3-amp/usr/bin/amp-compress I: dh_python3 tools:114: replacing shebang in debian/python3-amp/usr/bin/amp-plotconvergence dh_numpy3 dh_fixperms make[1]: Leaving directory '/<>' dh_installinit -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild f86dc527577f7f8b10adcc9a488ad08855ec4769 c9268241cd470f44afd00bb27abdda078ed6ea12 a6f58c715a3f7fd3041ddc27ff38a91b3b099a33 260783a48d7c5779dc80a6bebf5ee3eb4d3b9eb0 a6ecd760db39f110cc9fb884318f0a549917652b f1ba1c55013ace8ea7b701aa7e8fb477d4b1a26c dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Breaks field of package python3-amp: substitution variable ${python3:Breaks} used, but is not defined dpkg-gencontrol: warning: Breaks field of package python3-amp: substitution variable ${python3:Breaks} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing python3-amp (in debian/python3-amp); do_strip: , oemstrip: pkgstriptranslations: processing python3-amp-dbgsym (in debian/.debhelper/python3-amp/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-amp/DEBIAN/control, package python3-amp, directory debian/python3-amp pkgstripfiles: processing control file: debian/.debhelper/python3-amp/dbgsym-root/DEBIAN/control, package python3-amp-dbgsym, directory debian/.debhelper/python3-amp/dbgsym-root dpkg-deb: building package 'python3-amp-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-amp/python3-amp-dbgsym_0.6.1-1build9_riscv64.deb'. pkgstripfiles: Running PNG optimization (using 8 cpus) for package python3-amp ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-amp' in '../python3-amp_0.6.1-1build9_riscv64.deb'. Renaming python3-amp-dbgsym_0.6.1-1build9_riscv64.deb to python3-amp-dbgsym_0.6.1-1build9_riscv64.ddeb dpkg-genbuildinfo --build=any -O../amp_0.6.1-1build9_riscv64.buildinfo Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in string eq at /usr/bin/dpkg-genbuildinfo line 336. dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../amp_0.6.1-1build9_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-11-02T20:01:39Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ amp_0.6.1-1build9_riscv64.changes: ---------------------------------- Format: 1.8 Date: Thu, 02 Nov 2023 10:03:50 +0100 Source: amp Binary: python3-amp Built-For-Profiles: noudeb Architecture: riscv64 Version: 0.6.1-1build9 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: python3-amp - Atomistic Machine-learning Package (python 3) Changes: amp (0.6.1-1build9) noble; urgency=medium . * No-change rebuild to build with python3.12 as supported. Checksums-Sha1: d8483cf69acb4d08e9007154347e251df45dfa61 10635 amp_0.6.1-1build9_riscv64.buildinfo 2b30e620583cc287b4b315eb8671888c3904381b 919742 python3-amp-dbgsym_0.6.1-1build9_riscv64.ddeb 0b415248f0c05fa85bfc14ebd2b4cb2c21b160f9 300726 python3-amp_0.6.1-1build9_riscv64.deb Checksums-Sha256: 92fe206bbb48d9b1dcc280f78a8061543f5dd6a87c001550f877f4e31c50f31b 10635 amp_0.6.1-1build9_riscv64.buildinfo d85dd58ef6f6322d6b6daca64c2d1937129536dfbcab34ca64a8d23e3b7b272b 919742 python3-amp-dbgsym_0.6.1-1build9_riscv64.ddeb 3f3988a982ebd8093cd7ec44b35a65bd028aab61184f3d9d359cb5f8dbd1784a 300726 python3-amp_0.6.1-1build9_riscv64.deb Files: 379b10880e294f2b9a07a9a50e6b3daa 10635 science optional amp_0.6.1-1build9_riscv64.buildinfo b085492e3d9c672c5a3dc621023b9624 919742 debug optional python3-amp-dbgsym_0.6.1-1build9_riscv64.ddeb 6fc5d9534928fb45ac0672611a6216e1 300726 science optional python3-amp_0.6.1-1build9_riscv64.deb /<>/amp_0.6.1-1build9_riscv64.changes.new could not be renamed to /<>/amp_0.6.1-1build9_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: amp Binary: python3-amp python3-amp-dbgsym Architecture: riscv64 Version: 0.6.1-1build9 Checksums-Md5: b085492e3d9c672c5a3dc621023b9624 919742 python3-amp-dbgsym_0.6.1-1build9_riscv64.ddeb 6fc5d9534928fb45ac0672611a6216e1 300726 python3-amp_0.6.1-1build9_riscv64.deb Checksums-Sha1: 2b30e620583cc287b4b315eb8671888c3904381b 919742 python3-amp-dbgsym_0.6.1-1build9_riscv64.ddeb 0b415248f0c05fa85bfc14ebd2b4cb2c21b160f9 300726 python3-amp_0.6.1-1build9_riscv64.deb Checksums-Sha256: d85dd58ef6f6322d6b6daca64c2d1937129536dfbcab34ca64a8d23e3b7b272b 919742 python3-amp-dbgsym_0.6.1-1build9_riscv64.ddeb 3f3988a982ebd8093cd7ec44b35a65bd028aab61184f3d9d359cb5f8dbd1784a 300726 python3-amp_0.6.1-1build9_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Thu, 02 Nov 2023 20:01:32 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.137ubuntu1), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13build1), autotools-dev (= 20220109.1), base-files (= 13ubuntu4), base-passwd (= 3.6.2), bash (= 5.2.15-2ubuntu1), binutils (= 2.41-6ubuntu1), binutils-common (= 2.41-6ubuntu1), binutils-riscv64-linux-gnu (= 2.41-6ubuntu1), blt (= 2.5.3+dfsg-4.1build2), bsdextrautils (= 2.39.1-4ubuntu2), bsdutils (= 1:2.39.1-4ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-1ubuntu1), cpp-13 (= 13.2.0-6ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.7ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 6.20231025), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1ubuntu1), dpkg-dev (= 1.22.1ubuntu1), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), fontconfig-config (= 2.14.2-4ubuntu1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-glyphicons-halflings (= 1.009~3.4.1+dfsg-3), fonts-lyx (= 2.3.7-1), g++ (= 4:13.2.0-1ubuntu1), g++-13 (= 13.2.0-6ubuntu1), gcc (= 4:13.2.0-1ubuntu1), gcc-13 (= 13.2.0-6ubuntu1), gcc-13-base (= 13.2.0-6ubuntu1), gettext (= 0.21-13build1), gettext-base (= 0.21-13build1), gfortran (= 4:13.2.0-1ubuntu1), gfortran-13 (= 13.2.0-6ubuntu1), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-6ubuntu1), libatomic1 (= 13.2.0-6ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1build1), libaudit1 (= 1:3.1.1-1build1), libbinutils (= 2.41-6ubuntu1), libblas3 (= 3.11.0-2build1), libblkid1 (= 2.39.1-4ubuntu2), libboost-dev (= 1.74.0.3ubuntu7), libboost1.74-dev (= 1.74.0+ds1-23ubuntu2), libbrotli1 (= 1.0.9-2build9), libbsd0 (= 0.11.7-4), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcap-ng0 (= 0.8.3-1build3), libcap2 (= 1:2.66-4ubuntu1), libcbor0.8 (= 0.8.0-2ubuntu1), libcc1-0 (= 13.2.0-6ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-6ubuntu1), libctf0 (= 2.41-6ubuntu1), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.7ubuntu1), libdeflate0 (= 1.18-1), libdpkg-perl (= 1.22.1ubuntu1), libdw1 (= 0.189-4), libedit2 (= 3.1-20230828-1), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libexpat1-dev (= 2.5.0-2), libffi8 (= 3.4.4-1), libfido2-1 (= 1.13.0-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontconfig1 (= 2.14.2-4ubuntu1), libfreetype6 (= 2.13.2+dfsg-1), libfribidi0 (= 1.0.13-3), libgcc-13-dev (= 13.2.0-6ubuntu1), libgcc-s1 (= 13.2.0-6ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran-13-dev (= 13.2.0-6ubuntu1), libgfortran5 (= 13.2.0-6ubuntu1), libglib2.0-0 (= 2.78.1-1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgomp1 (= 13.2.0-6ubuntu1), libgpg-error0 (= 1.47-2), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.20.1-3ubuntu1), libharfbuzz0b (= 8.0.1-1), libicu72 (= 72.1-3ubuntu3), libimagequant0 (= 2.17.0-1), libisl23 (= 0.26-3), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6.1ubuntu1), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjs-bootstrap (= 3.4.1+dfsg-3), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-sphinxdoc (= 5.3.0-7), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libk5crypto3 (= 1.20.1-3ubuntu1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-3ubuntu1), libkrb5support0 (= 1.20.1-3ubuntu1), liblapack3 (= 3.11.0-2build1), liblbfgsb0 (= 3.0+dfsg.4-1), liblcms2-2 (= 2.14-2), liblerc4 (= 4.0.0+ds-2ubuntu2), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.4-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmount1 (= 2.39.1-4ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncursesw6 (= 6.4+20231016-1), libnorm1 (= 1.5.9+dfsg-2), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libopenblas-dev (= 0.3.24+ds-1), libopenblas-pthread-dev (= 0.3.24+ds-1), libopenblas0 (= 0.3.24+ds-1), libopenblas0-pthread (= 0.3.24+ds-1), libopenjp2-7 (= 2.5.0-2), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpcre2-8-0 (= 10.42-4), libperl5.36 (= 5.36.0-9ubuntu1), libpgm-5.3-0 (= 5.3.128~dfsg-2), libpipeline1 (= 1.5.7-1), libpng16-16 (= 1.6.40-2), libproc2-0 (= 2:4.0.3-1ubuntu1), libpython3-all-dev (= 3.11.4-5ubuntu1), libpython3-dev (= 3.11.4-5ubuntu1), libpython3-stdlib (= 3.11.4-5ubuntu1), libpython3.11 (= 3.11.6-3), libpython3.11-dev (= 3.11.6-3), libpython3.11-minimal (= 3.11.6-3), libpython3.11-stdlib (= 3.11.6-3), libpython3.12 (= 3.12.0-1), libpython3.12-dev (= 3.12.0-1), libpython3.12-minimal (= 3.12.0-1), libpython3.12-stdlib (= 3.12.0-1), libqhull-r8.0 (= 2020.2-6), libraqm0 (= 0.10.1-1), libreadline8 (= 8.2-1.3), libselinux1 (= 3.5-1build1), libsemanage-common (= 3.5-1build1), libsemanage2 (= 3.5-1build1), libsepol2 (= 3.5-1), libsframe1 (= 2.41-6ubuntu1), libsharpyuv0 (= 1.3.2-0.3), libsmartcols1 (= 2.39.1-4ubuntu2), libsodium23 (= 1.0.18-1build2), libsqlite3-0 (= 3.43.2-1), libssl3 (= 3.0.10-1ubuntu2.1), libstdc++-13-dev (= 13.2.0-6ubuntu1), libstdc++6 (= 13.2.0-6ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 253.5-1ubuntu7), libtcl8.6 (= 8.6.13+dfsg-2), libtiff6 (= 4.5.1+git230720-1ubuntu1), libtinfo6 (= 6.4+20231016-1), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtk8.6 (= 8.6.13-2), libtool (= 2.4.7-7), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu7), libunistring5 (= 1.1-2), libuuid1 (= 2.39.1-4ubuntu2), libwebp7 (= 1.3.2-0.3), libwebpdemux2 (= 1.3.2-0.3), libwebpmux3 (= 1.3.2-0.3), libwrap0 (= 7.6.q-32), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libxau6 (= 1:1.0.9-1build5), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.6-1), libxml2 (= 2.9.14+dfsg-1.3build1), libxrender1 (= 1:0.9.10-1.1), libxsimd-dev (= 10.0.0-3), libxslt1.1 (= 1.1.35-1), libxss1 (= 1:1.2.3-1build2), libzmq5 (= 4.3.5-1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.5.0-9.9), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 43), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20230808-1), media-types (= 10.1.0), ncurses-base (= 6.4+20231016-1), ncurses-bin (= 6.4+20231016-1), openssh-client (= 1:9.3p1-1ubuntu3), openssh-server (= 1:9.3p1-1ubuntu3), openssh-sftp-server (= 1:9.3p1-1ubuntu3), passwd (= 1:4.13+dfsg1-1ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-9ubuntu1), perl-base (= 5.36.0-9ubuntu1), perl-modules-5.36 (= 5.36.0-9ubuntu1), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.3-1ubuntu1), python-matplotlib-data (= 3.6.3-1ubuntu3), python3 (= 3.11.4-5ubuntu1), python3-all (= 3.11.4-5ubuntu1), python3-all-dev (= 3.11.4-5ubuntu1), python3-appdirs (= 1.4.4-4), python3-ase (= 3.22.1-3), python3-attr (= 23.1.0-2), python3-beniget (= 0.4.1-3), python3-brotli (= 1.0.9-2build9), python3-cffi-backend (= 1.16.0-1ubuntu1), python3-contourpy (= 1.0.7-1build2), python3-cycler (= 0.11.0-1), python3-dateutil (= 2.8.2-3), python3-decorator (= 5.1.1-5), python3-dev (= 3.11.4-5ubuntu1), python3-distutils (= 3.11.5-1), python3-fonttools (= 4.38.0-1build2), python3-fs (= 2.4.16-2), python3-gast (= 0.5.2-2), python3-kiwisolver (= 1.4.4-1build2), python3-lib2to3 (= 3.11.5-1), python3-lxml (= 4.9.3-1build1), python3-lz4 (= 4.0.2+dfsg-1build2), python3-matplotlib (= 3.6.3-1ubuntu3), python3-minimal (= 3.11.4-5ubuntu1), python3-mpmath (= 1.2.1-2), python3-nose (= 1.3.7-11), python3-numpy (= 1:1.24.2-1ubuntu1), python3-packaging (= 23.2-1), python3-pexpect (= 4.8.0-4ubuntu1), python3-pil (= 10.1.0-1), python3-pil.imagetk (= 10.1.0-1), python3-pkg-resources (= 68.1.2-2), python3-ply (= 3.11-5), python3-ptyprocess (= 0.7.0-5), python3-py (= 1.11.0-1), python3-pyparsing (= 3.1.1-1), python3-pythran (= 0.14.0+ds-2), python3-scipy (= 1.10.1-5), python3-setuptools (= 68.1.2-2), python3-six (= 1.16.0-4), python3-spglib (= 2.0.2-1build4), python3-sympy (= 1.12-6), python3-tk (= 3.11.5-1), python3-tz (= 2023.3.post1-1), python3-ufolib2 (= 0.16.0+dfsg1-1), python3-zmq (= 24.0.1-4build2), python3.11 (= 3.11.6-3), python3.11-dev (= 3.11.6-3), python3.11-minimal (= 3.11.6-3), python3.12 (= 3.12.0-1), python3.12-dev (= 3.12.0-1), python3.12-minimal (= 3.12.0-1), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), tk8.6-blt2.5 (= 2.5.3+dfsg-4.1build2), tzdata (= 2023c-9ubuntu1), ucf (= 3.0043+nmu1), unicode-data (= 15.1.0-1), util-linux (= 2.39.1-4ubuntu2), x11-common (= 1:7.7+23ubuntu2), xz-utils (= 5.4.4-0.1), zlib1g (= 1:1.2.13.dfsg-1ubuntu5), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" DEB_GCJFLAGS_SET="-fdebug-prefix-map=/<>=/usr/src/amp-0.6.1-1build9" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1698915830" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-amp_0.6.1-1build9_riscv64.deb ------------------------------------- new Debian package, version 2.0. size 300726 bytes: control archive=2787 bytes. 1610 bytes, 27 lines control 4306 bytes, 44 lines md5sums 287 bytes, 12 lines * postinst #!/bin/sh 386 bytes, 12 lines * prerm #!/bin/sh Package: python3-amp Source: amp Version: 0.6.1-1build9 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 2552 Depends: python3-ase (>= 3.14.0~), python3-scipy, python3 (<< 3.13), python3 (>= 3.11~), python3-matplotlib, python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3-pexpect, python3-zmq, python3:any (>= 3.5~), libc6 (>= 2.27), libgcc-s1 (>= 4.0), libgfortran5 (>= 10) Section: science Priority: optional Homepage: https://bitbucket.org/andrewpeterson/amp Description: Atomistic Machine-learning Package (python 3) Amp is an open-source package designed to easily bring machine-learning to atomistic calculations. This project is being developed at Brown University in the School of Engineering, primarily by Andrew Peterson and Alireza Khorshidi, and is released under the GNU General Public License. Amp allows for the modular representation of the potential energy surface, allowing the user to specify or create descriptor and regression methods. . Amp is designed to integrate closely with the Atomic Simulation Environment (ASE). As such, the interface is in pure python, although several compute-heavy parts of the underlying code also have fortran versions to accelerate the calculations. The close integration with ASE means that any calculator that works with ASE ─ including EMT, GPAW, DACAPO, VASP, NWChem, and Gaussian ─ can easily be used as the parent method. . This package provides the python 3 modules. drwxr-xr-x root/root 0 2023-11-02 09:03 ./ drwxr-xr-x root/root 0 2023-11-02 09:03 ./usr/ drwxr-xr-x root/root 0 2023-11-02 09:03 ./usr/bin/ -rwxr-xr-x root/root 1427 2023-11-02 09:03 ./usr/bin/amp-compress -rwxr-xr-x root/root 787 2023-11-02 09:03 ./usr/bin/amp-plotconvergence drwxr-xr-x root/root 0 2023-11-02 09:03 ./usr/lib/ drwxr-xr-x root/root 0 2023-11-02 09:03 ./usr/lib/python3.11/ drwxr-xr-x root/root 0 2023-11-02 09:03 ./usr/lib/python3.11/dist-packages/ drwxr-xr-x root/root 0 2023-11-02 09:03 ./usr/lib/python3.11/dist-packages/amp/ -rw-r--r-- root/root 331704 2023-11-02 09:03 ./usr/lib/python3.11/dist-packages/amp/fmodules.cpython-311-riscv64-linux-gnu.so drwxr-xr-x root/root 0 2023-11-02 09:03 ./usr/lib/python3.12/ drwxr-xr-x root/root 0 2023-11-02 09:03 ./usr/lib/python3.12/dist-packages/ drwxr-xr-x root/root 0 2023-11-02 09:03 ./usr/lib/python3.12/dist-packages/amp/ -rw-r--r-- root/root 331712 2023-11-02 09:03 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./usr/lib/python3/dist-packages/amp/tests/misc_test/fpplot_test.py -rw-r--r-- root/root 5501 2023-11-02 09:03 ./usr/lib/python3/dist-packages/amp/tests/misc_test/numeric_analytic_test.py -rw-r--r-- root/root 2772 2023-11-02 09:03 ./usr/lib/python3/dist-packages/amp/tests/misc_test/rotated_atoms_test.py -rw-r--r-- root/root 2864 2023-11-02 09:03 ./usr/lib/python3/dist-packages/amp/tests/test_NN_nodeplot.py -rw-r--r-- root/root 2375 2023-11-02 09:03 ./usr/lib/python3/dist-packages/amp/tests/test_gaussian_neural.py -rw-r--r-- root/root 2696 2023-11-02 09:03 ./usr/lib/python3/dist-packages/amp/tests/test_gaussian_tflow.py -rw-r--r-- root/root 42197 2018-07-19 20:19 ./usr/lib/python3/dist-packages/amp/utilities.py drwxr-xr-x root/root 0 2023-11-02 09:03 ./usr/lib/python3/dist-packages/amp_atomistics-0.6.1.egg-info/ -rw-r--r-- root/root 2535 2023-11-02 09:03 ./usr/lib/python3/dist-packages/amp_atomistics-0.6.1.egg-info/PKG-INFO -rw-r--r-- root/root 1 2023-11-02 09:03 ./usr/lib/python3/dist-packages/amp_atomistics-0.6.1.egg-info/dependency_links.txt -rw-r--r-- root/root 0 2023-11-02 09:03 ./usr/lib/python3/dist-packages/amp_atomistics-0.6.1.egg-info/requires.txt -rw-r--r-- root/root 4 2023-11-02 09:03 ./usr/lib/python3/dist-packages/amp_atomistics-0.6.1.egg-info/top_level.txt -rw-r--r-- root/root 327608 2023-11-02 09:03 ./usr/lib/python3/dist-packages/fmodules.cpython-311-riscv64-linux-gnu.so -rw-r--r-- root/root 331712 2023-11-02 09:03 ./usr/lib/python3/dist-packages/fmodules.cpython-312-riscv64-linux-gnu.so drwxr-xr-x root/root 0 2023-11-02 09:03 ./usr/share/ drwxr-xr-x root/root 0 2023-11-02 09:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-11-02 09:03 ./usr/share/doc/python3-amp/ -rw-r--r-- root/root 499 2023-11-02 09:03 ./usr/share/doc/python3-amp/changelog.Debian.gz -rw-r--r-- root/root 1245 2018-10-28 14:00 ./usr/share/doc/python3-amp/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 31040 Build-Time: 2122 Distribution: noble-proposed Host Architecture: riscv64 Install-Time: 1779 Job: amp_0.6.1-1build9.dsc Machine Architecture: riscv64 Package: amp Package-Time: 3930 Source-Version: 0.6.1-1build9 Space: 31040 Status: successful Version: 0.6.1-1build9 -------------------------------------------------------------------------------- Finished at 2023-11-02T20:01:39Z Build needed 01:05:30, 31040k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953643 Scanning for processes to kill in build PACKAGEBUILD-26953643 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953643 Stopping target for build PACKAGEBUILD-26953643 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953643 Removing build PACKAGEBUILD-26953643