Change log for ampliconnoise package in Ubuntu

ampliconnoise (1.29-10build3) noble; urgency=medium

  * No-change rebuild for CVE-2024-3094

 -- William Grant <email address hidden>  Mon, 01 Apr 2024 16:12:03 +1100

Available diffs

• diff from 1.29-10build2 to 1.29-10build3 (317 bytes)

ampliconnoise (1.29-10build2) noble; urgency=medium

  * No-change rebuild against libopenmpi3t64

 -- Steve Langasek <email address hidden>  Wed, 13 Mar 2024 18:12:23 +0000

Available diffs

• diff from 1.29-10build1 to 1.29-10build2 (318 bytes)

ampliconnoise (1.29-10build1) jammy; urgency=medium

  * No-change rebuild against libgsl27

 -- Steve Langasek <email address hidden>  Tue, 07 Dec 2021 17:22:36 +0000

Available diffs

• diff from 1.29-10 (in Debian) to 1.29-10build1 (546 bytes)

ampliconnoise (1.29-10) unstable; urgency=medium

  * Fix watchfile to detect new versions on github
  * Standards-Version: 4.6.0 (routine-update)

 -- Andreas Tille <email address hidden>  Fri, 08 Oct 2021 23:00:19 +0200

Available diffs

• diff from 1.29-9 to 1.29-10 (577 bytes)

ampliconnoise (1.29-9) unstable; urgency=medium

  [ Andreas Tille ]
  * Fix edam syntax input+output is singular
  * SEQwiki is deprecated

  [ Steffen Moeller ]
  * d/u/metadata: yamllint

  [ Pranav Ballaney ]
  * Install example and reference data
  * Add autopkgtests
  * Install docs
  * Add Pranav Ballaney to Uploaders

  [ Andreas Tille ]
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Remove trailing whitespace in debian/changelog (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Trim trailing whitespace.
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

 -- Pranav Ballaney <email address hidden>  Sun, 19 Jul 2020 13:06:00 +0530

Available diffs

• diff from 1.29-8build1 (in Ubuntu) to 1.29-9 (3.7 KiB)

ampliconnoise (1.29-8build1) groovy; urgency=medium

  * No-change rebuild against libgsl25

 -- Graham Inggs <email address hidden>  Thu, 07 May 2020 21:53:29 +0000

Available diffs

• diff from 1.29-8 (in Debian) to 1.29-8build1 (336 bytes)

ampliconnoise (1.29-8) unstable; urgency=medium

  * Set Homepage to automatic clone from googlecode to Github
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1

 -- Andreas Tille <email address hidden>  Fri, 19 Oct 2018 14:20:25 +0200

Available diffs

• diff from 1.29-7build1 (in Ubuntu) to 1.29-8 (1.0 KiB)

ampliconnoise (1.29-7build1) cosmic; urgency=medium

  * No-change rebuild for dune openmpi soname change.

 -- Matthias Klose <email address hidden>  Sun, 13 May 2018 15:01:41 +0000

Available diffs

• diff from 1.29-7 (in Debian) to 1.29-7build1 (328 bytes)

ampliconnoise (1.29-7) unstable; urgency=medium

  * Moved packaging from SVN to Git
  * Standards-Version: 4.1.1

 -- Andreas Tille <email address hidden>  Mon, 13 Nov 2017 14:56:48 +0100

Available diffs

• diff from 1.29-6ubuntu3 (in Ubuntu) to 1.29-7 (908 bytes)

ampliconnoise (1.29-6ubuntu3) artful; urgency=medium

  * No-change rebuild for libgsl soname change.

 -- Matthias Klose <email address hidden>  Sun, 06 Aug 2017 00:07:53 +0000

Available diffs

• diff from 1.29-6ubuntu2 to 1.29-6ubuntu3 (350 bytes)

ampliconnoise (1.29-6ubuntu2) artful; urgency=medium

  * Enable all hardening now that PIE is the default on all architectures

 -- Graham Inggs <email address hidden>  Sun, 21 May 2017 09:14:33 +0200

Available diffs

• diff from 1.29-6ubuntu1 to 1.29-6ubuntu2 (559 bytes)

ampliconnoise (1.29-6ubuntu1) zesty; urgency=medium

  * Do not force PIE hardening to avoid FTBFS on arm64 and armhf

 -- Graham Inggs <email address hidden>  Wed, 12 Apr 2017 20:51:17 +0200

Available diffs

• diff from 1.29-5build2 to 1.29-6ubuntu1 (2.4 KiB)
• diff from 1.29-6 (in Debian) to 1.29-6ubuntu1 (722 bytes)

ampliconnoise (1.29-6) unstable; urgency=medium

  [ Steffen Moeller and Jon Ison ]
  * Introduction of EDAM annotation in debian/upstream/edam

  [ Andreas Tille ]
  * Add README.source with status of code copies on Github
  * Sort out most sensible location for source on Gitgub and point d/watch
    as well as Source field in d/control to it
  * cme fix dpkg-control
  * debhelper 10
  * hardening=+all

 -- Andreas Tille <email address hidden>  Thu, 17 Nov 2016 11:02:49 +0100

Available diffs

• diff from 1.29-5build2 (in Ubuntu) to 1.29-6 (2.4 KiB)

ampliconnoise (1.29-5build2) zesty; urgency=medium

  * No-change rebuild against libopenmpi2

 -- Steve Langasek <email address hidden>  Sat, 22 Oct 2016 01:13:44 +0000

Available diffs

• diff from 1.29-5build1 to 1.29-5build2 (528 bytes)

ampliconnoise (1.29-5build1) xenial; urgency=medium

  * No-change rebuild for openmpi transition.

 -- Matthias Klose <email address hidden>  Sun, 07 Feb 2016 12:55:42 +0000

Available diffs

• diff from 1.29-5 (in Debian) to 1.29-5build1 (344 bytes)

ampliconnoise (1.29-5) unstable; urgency=medium

  * Fix Mayhem issues by making reading fasta files more robust
    Closes: #715593, #715594
  * Fix remaining hardening issue

 -- Andreas Tille <email address hidden>  Fri, 18 Dec 2015 16:05:09 +0100

Available diffs

• diff from 1.29-4 to 1.29-5 (1.3 KiB)

ampliconnoise (1.29-4) unstable; urgency=medium

  [ Bas Couwenberg ]
  * Drop explicit dependency on libgsl0ldbl, rely on ${shlibs:Depends}.
    Closes: #807177

  [ Andreas Tille ]
  * Verified Mayhem bugs (bugs in Perseus and PerseusD remain)
    Closes: #715585

 -- Andreas Tille <email address hidden>  Mon, 07 Dec 2015 16:45:40 +0100

Available diffs

• diff from 1.29-2build2 (in Ubuntu) to 1.29-4 (1.3 KiB)
• diff from 1.29-3 to 1.29-4 (531 bytes)

ampliconnoise (1.29-3) unstable; urgency=medium

  [ Bas Couwenberg ]
  * Update build dependencies for GSL 2, change libgsl0-dev to libgsl-dev.
    Closes: #804246

  [ Andreas Tille ]
  * cme fix dpkg-control
  * DEP5 fix

 -- Andreas Tille <email address hidden>  Sun, 06 Dec 2015 21:57:05 +0100

Available diffs

• diff from 1.29-2build2 (in Ubuntu) to 1.29-3 (1.3 KiB)

ampliconnoise (1.29-2build2) xenial; urgency=medium

  * Use libgsl-dev instead of libgsl0-dev

 -- Iain Lane <email address hidden>  Tue, 10 Nov 2015 16:41:01 +0000

Available diffs

• diff from 1.29-2build1 to 1.29-2build2 (617 bytes)

ampliconnoise (1.29-2build1) xenial; urgency=medium

  * No-change rebuild against new gsl

 -- Iain Lane <email address hidden>  Tue, 10 Nov 2015 14:25:35 +0000

Available diffs

• diff from 1.29-2 (in Debian) to 1.29-2build1 (315 bytes)

ampliconnoise (1.29-2) unstable; urgency=low


  [ Arthur Marble ]
  * Fix the FTBFS with clang:
    - Fixed the non-void function should return a value in
      FCluster/FCluster.c
      SplitClusterEven/SplitClusterEven.c
    Closes: #740029

  [ James McCoy ]
  * Moved debian/upstream to debian/upstream/metadata

 -- Andreas Tille <email address hidden>  Tue, 25 Feb 2014 08:57:09 +0100

Available diffs

• diff from 1.29-1 to 1.29-2 (978 bytes)

ampliconnoise (1.29-1) unstable; urgency=medium


  * New upstream version
  * debian/control:
     - cme fix dpkg-control
     - shorter short decription

 -- Andreas Tille <email address hidden>  Sun, 12 Jan 2014 21:14:08 +0100

Available diffs

• diff from 1.28-1build1 (in Ubuntu) to 1.29-1 (30.4 KiB)

ampliconnoise (1.28-1build1) trusty; urgency=medium

  * No-change rebuild for libopenmpi1.3 -> libopenmpi1.6 transition.
 -- Logan Rosen <email address hidden>   Sat, 14 Dec 2013 22:54:03 -0500

Available diffs

• diff from 1.28-1 (in Debian) to 1.28-1build1 (357 bytes)

ampliconnoise (1.28-1) unstable; urgency=low


  * New upstream version uploaded to Debian
  * debian/control
     - cme fix dpkg-control
     - no need to Build-Depend from quilt
     - debhelper 9
     - Priority: optional
     - Normalised Vcs fields
     - Remove duplicated publication information from
       long description
  * debian/get-orig-source: Removed because upstream
    stripped off their tarball
  * debian/README.source: Removed because it became now
    unneeded.
  * debian/doc-base: created
  * debian/rules:
     - do not compress pdf files
  * debian/patches/hardening.patch: Propagate hardening options

 -- Andreas Tille <email address hidden>  Tue, 30 Jul 2013 09:49:02 +0200

Available diffs

• diff from 1.25-1 (in Ubuntu) to 1.28-1 (52.6 KiB)

ampliconnoise (1.25-1) unstable; urgency=low

  [ Steffen sponsoring Tim's update ]
  * Removed Steffen from uploader's list
  * Removing emacs-typical backup files from source tree

Available diffs

• diff from 1.22-2 to 1.25-1 (23.4 KiB)

ampliconnoise (1.22-2) unstable; urgency=low

  * Initial upload (Closes: #624362).
  * Helped the (still too complicated) update script.
  * Added myself to uploaders.