Change log for apbs package in Ubuntu

apbs (3.4.1-5.1ubuntu2) noble; urgency=medium

  * No-change rebuild for CVE-2024-3094

 -- Steve Langasek <email address hidden>  Sun, 31 Mar 2024 17:39:33 +0000

Available diffs

• diff from 3.4.1-5.1build1 to 3.4.1-5.1ubuntu2 (713 bytes)
• diff from 3.4.1-5.1ubuntu1 to 3.4.1-5.1ubuntu2 (329 bytes)

apbs (3.4.1-5.1ubuntu1) noble; urgency=medium

  * d/t/test-apbs: explicitly use bash as shell interpreter
    (Closes #1033528, LP: #2059164)

 -- Simon Chopin <email address hidden>  Fri, 29 Mar 2024 15:19:36 +0100

Available diffs

• diff from 3.4.1-5.1build1 to 3.4.1-5.1ubuntu1 (658 bytes)

apbs (3.4.1-5.1build1) noble; urgency=medium

  * No-change rebuild for python3.12 t64.

 -- Matthias Klose <email address hidden>  Sat, 02 Mar 2024 21:11:10 +0100

Available diffs

• diff from 3.4.1-5build5 to 3.4.1-5.1build1 (3.4 KiB)
• diff from 3.4.1-5.1 (in Debian) to 3.4.1-5.1build1 (301 bytes)

apbs (3.4.1-5.1) unstable; urgency=medium

  * Non-maintainer upload.
  * Rename libraries for 64-bit time_t transition.  Closes: #1061891

 -- Steve Langasek <email address hidden>  Wed, 28 Feb 2024 01:04:53 +0000

Available diffs

• diff from 3.4.1-5build5 (in Ubuntu) to 3.4.1-5.1 (3.4 KiB)

apbs (3.4.1-5build5) noble; urgency=medium

  * No-change rebuild with Python 3.12 as default

 -- Graham Inggs <email address hidden>  Fri, 19 Jan 2024 18:56:34 +0000

Available diffs

• diff from 3.4.1-5build4 to 3.4.1-5build5 (312 bytes)

apbs (3.4.1-5build4) noble; urgency=medium

  * Rebuild against new libcholmod5.

 -- Gianfranco Costamagna <email address hidden>  Thu, 23 Nov 2023 17:58:05 +0100

Available diffs

• diff from 3.4.1-5build3 to 3.4.1-5build4 (305 bytes)

apbs (3.4.1-5build3) noble; urgency=medium

  * Rebuild against new libspqr4.

 -- Gianfranco Costamagna <email address hidden>  Fri, 27 Oct 2023 10:47:26 +0200

Available diffs

• diff from 3.4.1-5build2 to 3.4.1-5build3 (311 bytes)

apbs (3.4.1-5build2) mantic; urgency=medium

  * No-change rebuild against

 -- Steve Langasek <email address hidden>  Tue, 15 Aug 2023 21:09:39 +0000

Available diffs

• diff from 3.4.1-5build1 to 3.4.1-5build2 (287 bytes)

apbs (3.4.1-5build1) mantic; urgency=medium

  * No-change rebuild against libamd3

 -- Steve Langasek <email address hidden>  Sun, 30 Jul 2023 20:54:28 +0000

Available diffs

• diff from 3.4.1-5 (in Debian) to 3.4.1-5build1 (471 bytes)

apbs (3.4.1-5) unstable; urgency=medium

  * Team upload.
  * Add patch to drop obsolete "U" mode passed to open(), which causes runtime
    errors with python 3.11, by Steve Langasek. Closes: #1028354.

 -- Michael Banck <email address hidden>  Tue, 10 Jan 2023 21:56:38 +0100

Available diffs

• diff from 3.4.1-4ubuntu1 (in Ubuntu) to 3.4.1-5 (2.5 KiB)

apbs (3.4.1-4ubuntu1) lunar; urgency=medium

  * debian/patches/open-U-obsolete.patch: Drop obsolete "U" mode passed
    to open().

 -- Steve Langasek <email address hidden>  Mon, 09 Jan 2023 21:29:06 +0000

Available diffs

• diff from 3.4.1-4 (in Debian) to 3.4.1-4ubuntu1 (948 bytes)
• diff from 3.4.1-4build1 to 3.4.1-4ubuntu1 (913 bytes)

apbs (3.4.1-4build1) lunar; urgency=medium

  * No-change rebuild with Python 3.11 as default

 -- Graham Inggs <email address hidden>  Sun, 25 Dec 2022 19:33:26 +0000

Available diffs

• diff from 3.4.1-4 (in Debian) to 3.4.1-4build1 (302 bytes)

apbs (3.4.1-4) unstable; urgency=medium

  * Team upload.
  * update patch on FETK punc component vf2c/uninit.c to test for
    availability of _FPU_MASK_IM rather than __mips to allow riscv64
    to build.
  * patch FETK punc component vf2c/uninit.c to define Masks for
    riscv64 interrupts. Thanks Bo YU. Closes: #1012302.
  * Standards-Version: 4.6.1

 -- Drew Parsons <email address hidden>  Sat, 04 Jun 2022 09:58:09 +0200

Available diffs

• diff from 3.0.0+dfsg1-3build2 (in Ubuntu) to 3.4.1-4 (24.0 MiB)
• diff from 3.4.1-3 to 3.4.1-4 (1000 bytes)

apbs (3.4.1-3) unstable; urgency=medium

  * Team upload.
  * patch FETK punc component vf2c/uninit.c to use specific MIPS fpu
    masks with _FPU_SETCW. Closes: #1012177.

 -- Drew Parsons <email address hidden>  Wed, 01 Jun 2022 13:43:34 +0200

Available diffs

• diff from 3.4.1-2 to 3.4.1-3 (541 bytes)

apbs (3.4.1-2) unstable; urgency=medium

  * Team upload.
  * Build-Depends-Indep: python3-yaml (to build docs)
  * add specific copyright entries for FETK components
    punc/src/pmg (GPL) and punc/src/vf2c (AT&T)
  * patch FETK punc component vf2c/uninit.c to not run __mips block on
    linux
  * don't double-up bin dir in path for apbs tools. Closes: #979339.
  * debian/rules: run build-time tests after dh_auto_install
  * FETK is now provided (built against system SuperLU), and debci
    tests pass. Closes: #1006382, #1008726.

 -- Drew Parsons <email address hidden>  Tue, 31 May 2022 02:52:47 +0200

apbs (3.0.0+dfsg1-3build2) jammy; urgency=medium

  * No-change rebuild with Python 3.10 as default version

 -- Graham Inggs <email address hidden>  Thu, 13 Jan 2022 19:01:44 +0000

Available diffs

• diff from 3.0.0+dfsg1-3build1 to 3.0.0+dfsg1-3build2 (334 bytes)

apbs (3.0.0+dfsg1-3build1) hirsute; urgency=medium

  * No-change rebuild to build with python3.9 as default.

 -- Matthias Klose <email address hidden>  Thu, 19 Nov 2020 18:30:35 +0100

Available diffs

• diff from 3.0.0+dfsg1-3 (in Debian) to 3.0.0+dfsg1-3build1 (324 bytes)

apbs (3.0.0+dfsg1-3) unstable; urgency=medium

  * Team upload.
  * use -fcommon in CFLAGS to aid build with gcc-10
    (managing multiple definitions of common variables).
    Closes: #956998.
  * provide python path to inputgen for build-time tests

 -- Drew Parsons <email address hidden>  Thu, 23 Jul 2020 17:35:23 +0800

Available diffs

• diff from 3.0.0+dfsg1-2 to 3.0.0+dfsg1-3 (751 bytes)

apbs (3.0.0+dfsg1-2) unstable; urgency=medium

  * Team upload.
  * reinstate debian patch python3.patch
    (to specify python executable as python3)

 -- Drew Parsons <email address hidden>  Wed, 24 Jun 2020 03:37:37 +0800

Available diffs

• diff from 1.5+dfsg1-3 to 3.0.0+dfsg1-2 (592.5 KiB)

apbs (1.5+dfsg1-3) unstable; urgency=medium

  * Team upload.
  * python3.patch, wrong-path-for-interpreter.patch: use python3 as
    python executable for tests and scripts, fix print statements

 -- Drew Parsons <email address hidden>  Fri, 03 Apr 2020 12:05:58 +0800

Available diffs

• diff from 1.4-1ubuntu1 (in Ubuntu) to 1.5+dfsg1-3 (14.9 MiB)

apbs (1.4-1ubuntu1) focal; urgency=medium

  * Build using python2.

 -- Matthias Klose <email address hidden>  Wed, 18 Mar 2020 08:44:49 +0100

Available diffs

• diff from 1.4-1build2 to 1.4-1ubuntu1 (649 bytes)

apbs (1.4-1build2) cosmic; urgency=medium

  * No-change rebuild for dune openmpi soname change.

 -- Matthias Klose <email address hidden>  Sun, 13 May 2018 19:19:34 +0000

Available diffs

• diff from 1.4-1build1 to 1.4-1build2 (318 bytes)

apbs (1.4-1build1) bionic; urgency=high

  * No change rebuild to pick up -fPIE compiler default

 -- Balint Reczey <email address hidden>  Tue, 03 Apr 2018 12:13:09 +0000

Available diffs

• diff from 1.4-1 (in Debian) to 1.4-1build1 (530 bytes)

apbs (1.4-1) unstable; urgency=low


  * New upstream release.

  [ Daniel Leidert ]
  * debian/control (Uploaders): Removed myself.
    (Standards-Version): Bumped to 3.9.4.
    (Vcs-Browser, Vcs-Svn): Fixed vcs-field-not-canonical.
    (DM-Upload-Allowed): Dropped.
    (Build-Depends): Dropped all autotools related build dependencies,
    libarpack2-dev, libblas-dev and bc. Added cmake, libpython-dev
    and zlib1g-dev.
  * debian/copyright: Updated.
  * debian/rules: Enable hardening. Dropped all autotools related stuff and
    rewrote it for cmake build system.
  * debian/watch: Make regex case insensitive.
  * debian/patches/03_skip_expensive_tests.patch: Dropped. Upstream changed
    to cmake.
  * debian/patches/06_quicktest.patch: Ditto.
  * debian/patches/07_destdir.patch: Ditto.
  * debian/patches/08_distclean.patch: Ditto.
  * debian/patches/09_acinclude_fix.patch: Ditto.
  * debian/patches/debian_make.patch: Added.
    - Compile internal libraries statically into apbs.
  * debian/patches/debian_testfiles.patch: Added.
    - Skip expensive tests (see 03_skip_expensive_tests.patch).
  * debian/patches/series: Adjusted.

  [ Andreas Tille ]
  * debian/upstream: Author field in BibTeX syntax

 -- Debichem Team <email address hidden>  Thu, 08 Aug 2013 18:21:30 +0200

Available diffs

• diff from 1.3.0-2 to 1.4-1 (16.1 MiB)

apbs (1.3.0-2) unstable; urgency=low


  * debian/apbs.install: Adjusted.
  * debian/apbs.manpages: Added to fix binary-without-manpage.
  * debian/compat: Increased dh level to 7.
  * debian/control: Used wrap-and-sort.
    (Standards-Version): Bumped to recent 3.9.3.
    (Build-Depends): Removed unused cdbs. Added autotools-dev version
    requirements. Lowered required debhelper version.
    (Vcs-Browser): Fixed.
  * debian/copyright: Updated. Removed BSD license file reference to fix
    copyright-refers-to-deprecated-bsd-license-file.
  * debian/rules: Run autotools_dev template. Added override target for
    dh_install. Added target to install upstream changelog file.
  * debian/upstream: Added.
  * debian/README.source: Dropped obsolete file.
  * debian/patches/*.patch: Updated for quilt.
  * debian/patches/04_remove_install-exec-am_rule.patch: Dropped. Moved
    patch content to 07_destdir.patch.
  * debian/patches/series: Adjusted.

 -- Daniel Leidert (dale) <email address hidden>  Sun, 29 Apr 2012 23:35:09 +0200

Available diffs

• diff from 1.2.1b-1build1 (in Ubuntu) to 1.3.0-2 (10.0 MiB)

apbs (1.2.1b-1build1) oneiric; urgency=low

  * gfortran-4.6 rebuild.
 -- Matthias Klose <email address hidden>   Sun, 11 Sep 2011 11:19:48 +0000

Available diffs

• diff from 1.2.1b-1 to 1.2.1b-1build1 (282 bytes)

apbs (1.2.1b-1) unstable; urgency=low

  * New upstream (bugfix) release.

  * debian/control (Standards-Version): Bumped to 3.8.3.
    (Build-Depends): Replace libmpich1.0-dev with mpi-default-dev.
  * debian/rules: Added list-missing target.
    (DEB_CONFIGURE_EXTRA_FLAGS, DEB_CONFIGURE_SCRIPT_ENV): Use the default
    MPI implementation for the architecture.
  * debian/watch: Slightly adjusted for upstream version schema.
 -- Ubuntu Archive Auto-Sync <email address hidden>   Fri,  01 Jan 2010 10:08:24 +0000

Available diffs

• diff from 1.1.0-1 to 1.2.1b-1 (756.8 KiB)

apbs (1.1.0-1) unstable; urgency=low

  * New upstream release.

  * debian/apbs.1: Added citation section.
    (SEE ALSO): User guide is not available locally anymore.
  * debian/apbs.doc-base,
    debian/apbs.dirs: Dropped useless files.
  * debian/apbs.install: Removed documentation files, because the user guide
    is not shipped anymore (closes: #508980). The lintian overrides are
    considered by dh_lintian.
  * debian/control (Uploaders): Removed LI as requested. Thanks for your work!
    (Build-Depends): Re-added arpack, which is back in main.
    (Standards-Version): Bumped to 3.8.2 (no other changes).
    (Vcs-Svn): Fixed vcs-field-uses-not-recommended-uri-format.
  * debian/copyright: Updated and completed.
  * debian/rules (DEB_CONFIGURE_EXTRA_FLAGS): Build with arpack.
  * debian/README.source: Added to comply to policy.
  * debian/lintian-overrides/apbs: Dropped. License file is not installed
    anymore.
  * debian/patches/01_html_documentation.dpatch: Dropped, as there is no
    documentation installed anymore.
  * debian/patches/04_remove_install-exec-am_rule.dpatch: Updated/adjusted.
  * debian/patches/05_reduce_test_suite.dpatch: Dropped (cannot be applied
    anymore).
  * debian/patches/00list: Adjusted.

 -- Bhavani Shankar <email address hidden>   Mon,  03 Aug 2009 15:14:46 +0100

Available diffs

• diff from 1.0.0-2 to 1.1.0-1 (2.9 MiB)

apbs (1.0.0-2) unstable; urgency=low

  * debian/patches/06_quicktest.dpatch: New patch, add a `quicktest' target
    which only runs a couple of small tests.
  * debian/rules (DEB_MAKE_CHECK_TARGET): Run quicktest instead of test for
    now.
  * debian/control (Build-Depends): Removed libarpack2-dev. (closes: #497722)
  * debian/rules (DEB_CONFIGURE_EXTRA_FLAGS): Removed --with-arpack.

 -- William Grant <email address hidden>   Wed,  08 Oct 2008 14:18:10 +0100

Available diffs

• diff from 1.0.0-1 to 1.0.0-2 (2.9 KiB)

apbs (1.0.0-1) unstable; urgency=low

  * New upstream release.
    + No longer contains a corrupted tarball (closes: #473822).
  * debian/patches/04_remove_install-exec-am_rule.dpatch: Refreshed.
  * debian/patches/05_reduce_test_suite.dpatch: New patch, remove most of the
    coordinates for the ion test to save time (closes: 475064).

 -- Ubuntu Archive Auto-Sync <email address hidden>   Wed,  11 Jun 2008 20:41:43 +0100

Available diffs

• diff from 0.5.1-2 to 1.0.0-1 (1.9 MiB)

apbs (0.5.1-2) unstable; urgency=low

  * Acknowledge NMU 0.5.1-1.1 (closes: #462263). Thanks to Colin Tuckley.

  [ Daniel Leidert ]
  * debian/apbs.1: Added.
  * debian/apbs.doc-base (Section): Adjusted accordingly to latest doc-base
    policy.
  * debian/apbs.install: Install lintian override.
  * debian/compat: Raised to level 5.
  * debian/control: Homepage field transition. Added Vcs fields. Added
    DM-Upload-Allowed field for DM status.
    (Maintainer): Set to the debichem team address. Moved Michael to
    Uploaders.
    (Uploaders): Added myself and LI Daobing.
    (Standards-Version): Updated to latest 3.7.3 (no other changes).
    (Build-Depends): Raised debhelper to v5. Added libarpack2-dev. Added
    libmpich1.0-dev for MPI support. Added python-minimal for some tests.
  * debian/copyright: Fixed old-fsf-address-in-copyright-file issue. Updated
    copyright information. Added exception.
  * debian/rules: Install the newly added apbs.1 manpage.
    (DEB_CONFIGURE_EXTRA_FLAGS): Enable building with arpack (not useful atm
    without tools). Set prefix.
    (DEB_CONFIGURE_EXTRA_FLAGS, DEB_CONFIGURE_SCRIPT_ENV): Enable MPI.
    (DEB_MAKE_INSTALL_TARGET): Only install from bin/ as long as we don't use
    the rest.
  * debian/watch: Updated to fit new source archive naming.
  * debian/lintian-overrides/apbs: Added. The documentation contains the
    license in several formats.

  [ LI Daobing ]
  * FTBFS if built twice in a row (Closes: #424100)

apbs (0.5.1-1~gutsy1) gutsy-backports; urgency=low

  * Automated backport upload; no source changes.

apbs (0.5.1-1) unstable; urgency=low

  * New upstream release.

  [ Daniel Leidert ]
  * debian/control (Build-Depends): Added dpatch and autotools-dev.
    (Standards-Version): Changed to latest standards version 3.7.2.
    (Description): Added Homepage field.
  * debian/copyright: Fixed download location after apbs has been moved to
    sourceforge.net.
  * debian/rules: Changed to use dpatch.mk instead of simple-patchsys.mk.
    Added buildcore.mk ruleset. Added FFLAGS flags to configure.
  * debian/watch: Added.
  * debian/patches/01_html_documentation.dpatch: Added. Replaces
    debian/patches/01_html_docu.patch.
  * debian/patches/02_remove_vf2c.dpatch: Added. Replaces
    debian/patches/02_remove_vf2c.patch.
  * debian/patches/90_autoreconf.dpatch: Added. Replaces
    debian/patches/90_autoreconf.patch. Probably closes: #424100.
  * debian/patches/00list: Added.

  [ Michael Banck ]
  * debian/patches/01_html_documentation: Updated.
  * debian/patches/02_remove_vf2c: Removed; no longer needed.
  * debian/patches/90_autoreconf: Likewise.
  * debian/control (Build-Depends): Added bc, needed for the test suite.
  * debian/rules (DEB_CONFIGURE_EXTRA_FLAGS): Added
    --with-fetk-include=/usr/include --with-fetk-library=/usr/lib
    --with-blas=-lblas.
  * debian/rules (DEB_MAKE_CHECK_TARGET): New target, run the test suite.
  * debian/patches/03_skip_expensive_tests.dpatch: New patch, skip tests which
    take a lot of memory and CPU.
  * debian/patches/04_remove_install-exec-am_rule.dpatch: New patch, remove
    the install-exec-am rule from the top-level Makefile.  We can just install
    that data manually and it does not support DESTDIR anyway.
  * debian/apbs.install: Updated location of the user's guide and tutorial in
    the source tree.  Install license.html as well.

 -- Ubuntu Archive Auto-Sync <email address hidden>   Tue,  23 Oct 2007 15:20:29 +0100

apbs (0.4.0-2) unstable; urgency=low

  * debian/patches: New directory, manage changes to upstream with
    simple-patchsys.mk.
  * debian/patches/01_html_docu.patch: New patch, supress link to the
    programmer's manual we don't ship for now.
  * debian/patches/02_remove_vf2c.patch: New patch, remove MALOC's own
    -lvf2c f2c fork from linking.
  * debian/patches/90_autoreconf.patch: Update libtool; closes: #378211.