RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-032 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:31:48 UTC 2017 aarch64 Buildd toolchain package versions: launchpad-buildd_154 python-lpbuildd_154 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 28 Oct 07:22:58 ntpdate[1823]: adjust time server 10.211.37.1 offset -0.022111 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13628955 /home/buildd/filecache-default/b70461af4419c13dbae7acd6fe74d075a1a9550f Creating target for build PACKAGEBUILD-13628955 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13628955 Starting target for build PACKAGEBUILD-13628955 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13628955 'deb http://ftpmaster.internal/ubuntu bionic main universe' Overriding sources.list in build-PACKAGEBUILD-13628955 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13628955 Updating target for build PACKAGEBUILD-13628955 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main armhf Packages [1031 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main Translation-en [542 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/universe armhf Packages [7871 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4788 kB] Fetched 14.5 MB in 5s (2668 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'sudo apt autoremove' to remove it. The following packages will be upgraded: apt apt-transport-https base-files binutils binutils-arm-linux-gnueabihf binutils-common build-essential coreutils cpp-7 g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapt-pkg5.0 libasan4 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcilkrts5 libcurl3-gnutls libgcc-7-dev libgcc1 libgomp1 libhogweed4 libkeyutils1 libnettle6 libpcre3 libpng16-16 libseccomp2 libsemanage-common libsemanage1 libstdc++-7-dev libstdc++6 libsystemd0 libubsan0 libudev1 linux-libc-dev multiarch-support systemd systemd-sysv tzdata 48 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 36.8 MB of archives. After this operation, 2063 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu bionic/main armhf base-files armhf 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main armhf coreutils armhf 8.26-3ubuntu4 [1111 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main armhf libc6-dev armhf 2.26-0ubuntu2 [1900 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main armhf libc-dev-bin armhf 2.26-0ubuntu2 [60.1 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf linux-libc-dev armhf 4.13.0-16.19 [934 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main armhf libgomp1 armhf 7.2.0-12ubuntu1 [65.8 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main armhf gcc-7-base armhf 7.2.0-12ubuntu1 [18.3 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main armhf libgcc1 armhf 1:7.2.0-12ubuntu1 [38.9 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main armhf libatomic1 armhf 7.2.0-12ubuntu1 [6274 B] Get:10 http://ftpmaster.internal/ubuntu bionic/main armhf libasan4 armhf 7.2.0-12ubuntu1 [330 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main armhf libubsan0 armhf 7.2.0-12ubuntu1 [109 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main armhf libcilkrts5 armhf 7.2.0-12ubuntu1 [36.1 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main armhf cpp-7 armhf 7.2.0-12ubuntu1 [5288 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main armhf libcc1-0 armhf 7.2.0-12ubuntu1 [32.3 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main armhf g++-7 armhf 7.2.0-12ubuntu1 [6035 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main armhf gcc-7 armhf 7.2.0-12ubuntu1 [5919 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main armhf libgcc-7-dev armhf 7.2.0-12ubuntu1 [706 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main armhf libstdc++-7-dev armhf 7.2.0-12ubuntu1 [1531 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main armhf libstdc++6 armhf 7.2.0-12ubuntu1 [358 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main armhf libbinutils armhf 2.29.1-4ubuntu1 [306 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main armhf binutils armhf 2.29.1-4ubuntu1 [3296 B] Get:22 http://ftpmaster.internal/ubuntu bionic/main armhf binutils-common armhf 2.29.1-4ubuntu1 [190 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main armhf binutils-arm-linux-gnueabihf armhf 2.29.1-4ubuntu1 [2189 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main armhf libc6 armhf 2.26-0ubuntu2 [2212 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main armhf libc-bin armhf 2.26-0ubuntu2 [477 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main armhf libudev1 armhf 234-2ubuntu12 [46.6 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main armhf libapt-pkg5.0 armhf 1.5.1 [712 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main armhf gpgv armhf 2.1.15-1ubuntu8 [157 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main armhf apt armhf 1.5.1 [1081 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main armhf libcap2 armhf 1:2.25-1.1 [11.9 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main armhf libseccomp2 armhf 2.3.1-2.1ubuntu3 [29.9 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main armhf systemd armhf 234-2ubuntu12 [2624 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main armhf libsystemd0 armhf 234-2ubuntu12 [190 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main armhf systemd-sysv armhf 234-2ubuntu12 [10.8 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main armhf libpcre3 armhf 2:8.39-5ubuntu3 [209 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main armhf libsemanage-common all 2.7-2 [6916 B] Get:37 http://ftpmaster.internal/ubuntu bionic/main armhf libsemanage1 armhf 2.7-2 [72.3 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main armhf libnettle6 armhf 3.3-2 [106 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main armhf libhogweed4 armhf 3.3-2 [126 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main armhf gnupg armhf 2.1.15-1ubuntu8 [711 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main armhf gnupg-agent armhf 2.1.15-1ubuntu8 [211 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main armhf multiarch-support armhf 2.26-0ubuntu2 [6832 B] Get:43 http://ftpmaster.internal/ubuntu bionic/main armhf tzdata all 2017c-1 [188 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main armhf libkeyutils1 armhf 1.5.9-9.1ubuntu1 [8560 B] Get:45 http://ftpmaster.internal/ubuntu bionic/main armhf libpng16-16 armhf 1.6.34-1 [159 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main armhf libcurl3-gnutls armhf 7.55.1-1ubuntu2.1 [167 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main armhf apt-transport-https armhf 1.5.1 [30.5 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main armhf build-essential armhf 12.4ubuntu1 [4752 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.8 MB in 1s (27.6 MB/s) (Reading database ... 12457 files and directories currently installed.) Preparing to unpack .../base-files_10ubuntu1_armhf.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12457 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_armhf.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12457 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.26-0ubuntu2_armhf.deb ... Unpacking libc6-dev:armhf (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../libc-dev-bin_2.26-0ubuntu2_armhf.deb ... Unpacking libc-dev-bin (2.26-0ubuntu2) over (2.26-0ubuntu1) ... 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Setting up libcap2:armhf (1:2.25-1.1) ... Setting up libseccomp2:armhf (2.3.1-2.1ubuntu3) ... Setting up systemd (234-2ubuntu12) ... Removing empty /etc/rc.local addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removed /etc/systemd/system/network-online.target.wants/systemd-networkd-wait-online.service. (Reading database ... 12461 files and directories currently installed.) Preparing to unpack .../systemd-sysv_234-2ubuntu12_armhf.deb ... Unpacking systemd-sysv (234-2ubuntu12) over (234-2ubuntu10) ... Preparing to unpack .../libpcre3_2%3a8.39-5ubuntu3_armhf.deb ... Unpacking libpcre3:armhf (2:8.39-5ubuntu3) over (2:8.39-4) ... Setting up libpcre3:armhf (2:8.39-5ubuntu3) ... (Reading database ... 12461 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.7-2_all.deb ... Unpacking libsemanage-common (2.7-2) over (2.7-1) ... Setting up libsemanage-common (2.7-2) ... 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Setting up libatomic1:armhf (7.2.0-12ubuntu1) ... Setting up libcc1-0:armhf (7.2.0-12ubuntu1) ... Setting up libasan4:armhf (7.2.0-12ubuntu1) ... Setting up libpng16-16:armhf (1.6.34-1) ... Setting up libcilkrts5:armhf (7.2.0-12ubuntu1) ... Setting up libcurl3-gnutls:armhf (7.55.1-1ubuntu2.1) ... Setting up multiarch-support (2.26-0ubuntu2) ... Setting up tzdata (2017c-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Oct 28 07:23:33 UTC 2017. Universal Time is now: Sat Oct 28 07:23:33 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (234-2ubuntu12) ... Setting up libubsan0:armhf (7.2.0-12ubuntu1) ... Setting up linux-libc-dev:armhf (4.13.0-16.19) ... Setting up libgcc-7-dev:armhf (7.2.0-12ubuntu1) ... Setting up cpp-7 (7.2.0-12ubuntu1) ... Setting up binutils-common:armhf (2.29.1-4ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up libc-dev-bin (2.26-0ubuntu2) ... Setting up libkeyutils1:armhf (1.5.9-9.1ubuntu1) ... Setting up gnupg-agent (2.1.15-1ubuntu8) ... Setting up libc6-dev:armhf (2.26-0ubuntu2) ... Setting up apt-transport-https (1.5.1) ... Setting up libbinutils:armhf (2.29.1-4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Setting up gnupg (2.1.15-1ubuntu8) ... Setting up binutils-arm-linux-gnueabihf (2.29.1-4ubuntu1) ... Setting up libstdc++-7-dev:armhf (7.2.0-12ubuntu1) ... Setting up binutils (2.29.1-4ubuntu1) ... Setting up gcc-7 (7.2.0-12ubuntu1) ... Setting up g++-7 (7.2.0-12ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13628955 armhf bionic -c chroot:build-PACKAGEBUILD-13628955 --arch=armhf --dist=bionic --nolog ariba_2.10.1+ds-1.dsc Initiating build PACKAGEBUILD-13628955 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:31:48 UTC 2017 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-032.buildd +==============================================================================+ | ariba 2.10.1+ds-1 (armhf) 28 Oct 2017 07:23 | +==============================================================================+ Package: ariba Version: 2.10.1+ds-1 Source Version: 2.10.1+ds-1 Distribution: bionic Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/ariba-ND6YIv/ariba-2.10.1+ds' with '<>' I: NOTICE: Log filtering will replace 'build/ariba-ND6YIv' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13628955/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ariba_2.10.1+ds-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-yZ3FhW/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-yZ3FhW/apt_archive ./ InRelease Get:2 copy:/<>/resolver-yZ3FhW/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-yZ3FhW/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-yZ3FhW/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-yZ3FhW/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (110 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 778 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-yZ3FhW/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [778 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 778 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12458 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), python3, python3-dev, python3-dendropy (>= 4.2.0), python3-setuptools, python3-pymummer (>= 0.10.2), python3-pysam (>= 0.9.1), python3-nose (>= 1.3), python3-bs4 (>= 4.1.0), python3-matplotlib, python3-tk, bowtie2 (>= 2.1.0), cd-hit, mash, libminimap-dev, libfml-dev (>= 0.1-3), mummer, fastaq (>= 3.12.0), help2man, asciidoctor Filtered Build-Depends: debhelper (>= 9), python3, python3-dev, python3-dendropy (>= 4.2.0), python3-setuptools, python3-pymummer (>= 0.10.2), python3-pysam (>= 0.9.1), python3-nose (>= 1.3), python3-bs4 (>= 4.1.0), python3-matplotlib, python3-tk, bowtie2 (>= 2.1.0), cd-hit, mash, libminimap-dev, libfml-dev (>= 0.1-3), mummer, fastaq (>= 3.12.0), help2man, asciidoctor dpkg-deb: building package 'sbuild-build-depends-ariba-dummy' in '/<>/resolver-vE_iA4/apt_archive/sbuild-build-depends-ariba-dummy.deb'. Ign:1 copy:/<>/resolver-vE_iA4/apt_archive ./ InRelease Get:2 copy:/<>/resolver-vE_iA4/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-vE_iA4/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-vE_iA4/apt_archive ./ Sources [353 B] Get:5 copy:/<>/resolver-vE_iA4/apt_archive ./ Packages [672 B] Fetched 3144 B in 0s (142 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ariba build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-ariba-dummy : Depends: python3-pysam (>= 0.9.1) but it is not installable Depends: bowtie2 (>= 2.1.0) but it is not installable Depends: libfml-dev (>= 0.1-3) but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. Package installation failed Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. The following packages will be REMOVED: sbuild-build-depends-core-dummy* 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 0 B of additional disk space will be used. (Reading database ... 12458 files and directories currently installed.) Removing sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Package build dependencies not satisfied; skipping +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 0 Build-Time: 0 Distribution: bionic Fail-Stage: install-deps Host Architecture: armhf Install-Time: 0 Job: ariba_2.10.1+ds-1.dsc Machine Architecture: arm64 Package: ariba Package-Time: 0 Source-Version: 2.10.1+ds-1 Space: 0 Status: failed Version: 2.10.1+ds-1 -------------------------------------------------------------------------------- Finished at 20171028-0723 Build needed 00:00:00, 0k disc space E: Package build dependencies not satisfied; skipping RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13628955 Scanning for processes to kill in build PACKAGEBUILD-13628955 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13628955 Stopping target for build PACKAGEBUILD-13628955 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13628955 Removing build PACKAGEBUILD-13628955