https://launchpad.net/ubuntu/+source/ariba/2.14.5+ds-1/+build/19339901 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-020 4.4.0-179-generic #209-Ubuntu SMP Fri Apr 24 17:47:22 UTC 2020 s390x Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.9 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 22 May 17:13:00 ntpdate[1894]: adjust time server 10.211.37.1 offset -0.001930 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19339901 --image-type chroot /home/buildd/filecache-default/0c27a67c210d6cb13869ddd14c37f7dc742e8ea2 Creating target for build PACKAGEBUILD-19339901 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19339901 Starting target for build PACKAGEBUILD-19339901 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19339901 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19339901 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19339901 Updating target for build PACKAGEBUILD-19339901 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main s390x Packages [924 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [507 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe s390x Packages [8315 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5172 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x Packages [56.4 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [33.6 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe s390x Packages [510 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [272 kB] Fetched 16.4 MB in 5s (3252 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files binutils binutils-common binutils-s390x-linux-gnu bsdutils cpp-9 dash debconf e2fsprogs fdisk g++-9 gcc-10-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv libacl1 libapparmor1 libapt-pkg6.0 libasan5 libatomic1 libbinutils libblkid1 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libext2fs2 libfdisk1 libgcc-9-dev libgcc-s1 libgomp1 libidn2-0 libitm1 libkmod2 libmount1 libncurses6 libncursesw6 libperl5.30 libprocps8 libseccomp2 libsmartcols1 libsqlite3-0 libss2 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libubsan1 libudev1 libuuid1 linux-libc-dev logsave make mount ncurses-base ncurses-bin perl perl-base perl-modules-5.30 procps systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata util-linux 74 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 45.7 MB of archives. After this operation, 473 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main s390x libcrypt-dev s390x 1:4.4.15-1ubuntu1 [107 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main s390x libcrypt1 s390x 1:4.4.15-1ubuntu1 [80.7 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main s390x base-files s390x 11ubuntu7 [60.0 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x bsdutils s390x 1:2.35.1-5ubuntu2 [82.9 kB] Get:5 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x perl-modules-5.30 all 5.30.2-1 [2740 kB] Get:6 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libperl5.30 s390x 5.30.2-1 [3795 kB] Get:7 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x perl s390x 5.30.2-1 [224 kB] Get:8 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x perl-base s390x 5.30.2-1 [1423 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main s390x debconf all 1.5.74 [121 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main s390x dash s390x 0.5.10.2-7 [86.0 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main s390x ncurses-bin s390x 6.2-1 [170 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libblkid1 s390x 2.35.1-5ubuntu2 [124 kB] Get:13 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libuuid1 s390x 2.35.1-5ubuntu2 [22.1 kB] Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libfdisk1 s390x 2.35.1-5ubuntu2 [156 kB] Get:15 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libmount1 s390x 2.35.1-5ubuntu2 [135 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main s390x libncurses6 s390x 6.2-1 [94.9 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main s390x libncursesw6 s390x 6.2-1 [122 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main s390x libtinfo6 s390x 6.2-1 [84.6 kB] Get:19 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libsmartcols1 s390x 2.35.1-5ubuntu2 [89.6 kB] Get:20 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x fdisk s390x 2.35.1-5ubuntu2 [117 kB] Get:21 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x util-linux s390x 2.35.1-5ubuntu2 [1011 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main s390x ncurses-base all 6.2-1 [18.7 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main s390x sysvinit-utils s390x 2.96-3ubuntu1 [20.6 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main s390x libatomic1 s390x 10.1.0-2ubuntu1 [8400 B] Get:25 http://ftpmaster.internal/ubuntu groovy/main s390x libubsan1 s390x 10.1.0-2ubuntu1 [156 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main s390x libitm1 s390x 10.1.0-2ubuntu1 [28.6 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main s390x libgomp1 s390x 10.1.0-2ubuntu1 [114 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main s390x gcc-10-base s390x 10.1.0-2ubuntu1 [20.3 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main s390x libgcc-s1 s390x 10.1.0-2ubuntu1 [30.3 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main s390x libcc1-0 s390x 10.1.0-2ubuntu1 [39.3 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main s390x libstdc++6 s390x 10.1.0-2ubuntu1 [518 kB] Get:32 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x systemd-sysv s390x 245.5-3ubuntu1 [10.3 kB] Get:33 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x systemd-timesyncd s390x 245.5-3ubuntu1 [25.9 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main s390x libacl1 s390x 2.2.53-8 [18.5 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main s390x libapparmor1 s390x 2.13.3-7ubuntu6 [32.9 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main s390x libcap2 s390x 1:2.34-2 [17.7 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main s390x libcryptsetup12 s390x 2:2.3.1-1ubuntu1 [169 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main s390x libidn2-0 s390x 2.3.0-1 [51.7 kB] Get:39 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libkmod2 s390x 27+20200310-2ubuntu1 [41.4 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main s390x libseccomp2 s390x 2.4.3-1ubuntu2 [44.0 kB] Get:41 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x mount s390x 2.35.1-5ubuntu2 [114 kB] Get:42 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x systemd s390x 245.5-3ubuntu1 [3432 kB] Get:43 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libsystemd0 s390x 245.5-3ubuntu1 [245 kB] Get:44 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libudev1 s390x 245.5-3ubuntu1 [69.9 kB] Get:45 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libapt-pkg6.0 s390x 2.1.4 [779 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main s390x gpgv s390x 2.2.20-1ubuntu1 [186 kB] Get:47 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x apt s390x 2.1.4 [1249 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main s390x logsave s390x 1.45.6-1ubuntu1 [10.1 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main s390x libext2fs2 s390x 1.45.6-1ubuntu1 [178 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main s390x e2fsprogs s390x 1.45.6-1ubuntu1 [508 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main s390x libcom-err2 s390x 1.45.6-1ubuntu1 [9512 B] Get:52 http://ftpmaster.internal/ubuntu groovy/main s390x libprocps8 s390x 2:3.3.16-4ubuntu1 [30.9 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main s390x libss2 s390x 1.45.6-1ubuntu1 [11.0 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main s390x procps s390x 2:3.3.16-4ubuntu1 [225 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main s390x libsqlite3-0 s390x 3.31.1-5 [512 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main s390x tzdata all 2020a-0ubuntu1 [293 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main s390x libctf0 s390x 2.34-7ubuntu1 [43.5 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main s390x binutils-s390x-linux-gnu s390x 2.34-7ubuntu1 [1446 kB] Get:59 http://ftpmaster.internal/ubuntu groovy/main s390x libbinutils s390x 2.34-7ubuntu1 [304 kB] Get:60 http://ftpmaster.internal/ubuntu groovy/main s390x binutils s390x 2.34-7ubuntu1 [3344 B] Get:61 http://ftpmaster.internal/ubuntu groovy/main s390x binutils-common s390x 2.34-7ubuntu1 [207 kB] Get:62 http://ftpmaster.internal/ubuntu groovy/main s390x libctf-nobfd0 s390x 2.34-7ubuntu1 [44.3 kB] Get:63 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libasan5 s390x 9.3.0-13ubuntu1 [361 kB] Get:64 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x g++-9 s390x 9.3.0-13ubuntu1 [6609 kB] Get:65 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x gcc-9 s390x 9.3.0-13ubuntu1 [6472 kB] Get:66 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libstdc++-9-dev s390x 9.3.0-13ubuntu1 [1677 kB] Get:67 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libgcc-9-dev s390x 9.3.0-13ubuntu1 [704 kB] Get:68 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x cpp-9 s390x 9.3.0-13ubuntu1 [5731 kB] Get:69 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x gcc-9-base s390x 9.3.0-13ubuntu1 [19.6 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main s390x gpg s390x 2.2.20-1ubuntu1 [448 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main s390x gpgconf s390x 2.2.20-1ubuntu1 [119 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main s390x gpg-agent s390x 2.2.20-1ubuntu1 [218 kB] Get:73 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x linux-libc-dev s390x 5.4.0-29.33 [1098 kB] Get:74 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x make s390x 4.3-1 [166 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 45.7 MB in 9s (5284 kB/s) (Reading database ... 12607 files and directories currently installed.) 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Setting up gpg-agent (2.2.20-1ubuntu1) ... Setting up e2fsprogs (1.45.6-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up binutils (2.34-7ubuntu1) ... Setting up fdisk (2.35.1-5ubuntu2) ... Setting up libasan5:s390x (9.3.0-13ubuntu1) ... Setting up perl (5.30.2-1) ... Setting up procps (2:3.3.16-4ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Removing obsolete conffile /etc/sysctl.d/10-link-restrictions.conf ... Setting up cpp-9 (9.3.0-13ubuntu1) ... Setting up libgcc-9-dev:s390x (9.3.0-13ubuntu1) ... Setting up gcc-9 (9.3.0-13ubuntu1) ... Setting up libstdc++-9-dev:s390x (9.3.0-13ubuntu1) ... Setting up g++-9 (9.3.0-13ubuntu1) ... Setting up systemd-timesyncd (245.5-3ubuntu1) ... Setting up systemd (245.5-3ubuntu1) ... Initializing machine ID from random generator. Setting up systemd-sysv (245.5-3ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19339901 s390x groovy-proposed -c chroot:build-PACKAGEBUILD-19339901 --arch=s390x --dist=groovy-proposed --nolog ariba_2.14.5+ds-1.dsc Initiating build PACKAGEBUILD-19339901 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-179-generic #209-Ubuntu SMP Fri Apr 24 17:47:22 UTC 2020 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-020.buildd +==============================================================================+ | ariba 2.14.5+ds-1 (s390x) 22 May 2020 17:13 | +==============================================================================+ Package: ariba Version: 2.14.5+ds-1 Source Version: 2.14.5+ds-1 Distribution: groovy-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/ariba-QFhfRs/ariba-2.14.5+ds' with '<>' I: NOTICE: Log filtering will replace 'build/ariba-QFhfRs' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19339901/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ariba_2.14.5+ds-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-CpYFmA/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-CpYFmA/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CpYFmA/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-CpYFmA/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CpYFmA/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-CpYFmA/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-CpYFmA/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12615 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-biopython, python3-all-dev, python3-dendropy, python3-setuptools, python3-pymummer (>= 0.10.2), python3-pysam (>= 0.9.1), python3-nose (>= 1.3), python3-bs4, python3-matplotlib, python3-tk, bowtie2 (>= 2.1.0), cd-hit, mash, libminimap-dev, libfml-dev (>= 0.1-4~), mummer, fastaq (>= 3.12.0), help2man, asciidoctor Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-biopython, python3-all-dev, python3-dendropy, python3-setuptools, python3-pymummer (>= 0.10.2), python3-pysam (>= 0.9.1), python3-nose (>= 1.3), python3-bs4, python3-matplotlib, python3-tk, bowtie2 (>= 2.1.0), cd-hit, mash, libminimap-dev, libfml-dev (>= 0.1-4~), mummer, fastaq (>= 3.12.0), help2man, asciidoctor dpkg-deb: building package 'sbuild-build-depends-ariba-dummy' in '/<>/resolver-v7MJvU/apt_archive/sbuild-build-depends-ariba-dummy.deb'. Ign:1 copy:/<>/resolver-v7MJvU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-v7MJvU/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-v7MJvU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-v7MJvU/apt_archive ./ Sources [365 B] Get:5 copy:/<>/resolver-v7MJvU/apt_archive ./ Packages [690 B] Fetched 3174 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ariba build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-ariba-dummy : Depends: python3-pysam (>= 0.9.1) but it is not installable Depends: bowtie2 (>= 2.1.0) but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. Package installation failed Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: sbuild-build-depends-core-dummy* 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 0 B of additional disk space will be used. (Reading database ... 12615 files and directories currently installed.) Removing sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Package build dependencies not satisfied; skipping +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 0 Build-Time: 0 Distribution: groovy-proposed Fail-Stage: install-deps Host Architecture: s390x Install-Time: 0 Job: ariba_2.14.5+ds-1.dsc Machine Architecture: s390x Package: ariba Package-Time: 0 Source-Version: 2.14.5+ds-1 Space: 0 Status: failed Version: 2.14.5+ds-1 -------------------------------------------------------------------------------- Finished at 20200522-1713 Build needed 00:00:00, 0k disc space E: Package build dependencies not satisfied; skipping RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19339901 Scanning for processes to kill in build PACKAGEBUILD-19339901