https://launchpad.net/ubuntu/+source/ariba/2.14.6+ds-1build1/+build/20375605 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-016 4.15.0-126-generic #129-Ubuntu SMP Mon Nov 23 18:53:23 UTC 2020 ppc64le Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 7 Dec 17:32:12 ntpdate[1943]: adjust time server 10.211.37.1 offset 0.000744 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20375605 --image-type chroot /home/buildd/filecache-default/562b8b0d733db483afe9600af35c69ac54075a74 Creating target for build PACKAGEBUILD-20375605 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20375605 Starting target for build PACKAGEBUILD-20375605 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20375605 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20375605 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20375605 Updating target for build PACKAGEBUILD-20375605 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main ppc64el Packages [1350 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el Packages [12.5 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5363 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el Packages [74.8 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [38.4 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el Packages [442 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [261 kB] Fetched 21.2 MB in 4s (4768 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libisl23 libperl5.32 perl-modules-5.32 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils coreutils cpp-10 dash dpkg dpkg-dev fakeroot g++-10 gcc-10 gcc-10-base grep init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libgssapi-krb5-2 libidn2-0 libip4tc2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 liblz4-1 libmount1 libmpc3 libncurses6 libncursesw6 libnpth0 libpcre2-8-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 libuuid1 linux-libc-dev login mount ncurses-base ncurses-bin passwd perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata util-linux 99 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 171 MB of archives. After this operation, 462 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcrypt-dev ppc64el 1:4.4.17-1ubuntu1 [131 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libc6-dev ppc64el 2.32-0ubuntu5 [2131 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libc-dev-bin ppc64el 2.32-0ubuntu5 [31.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcrypt1 ppc64el 1:4.4.17-1ubuntu1 [99.8 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el linux-libc-dev ppc64el 5.8.0-32.34+21.04.1 [1134 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtirpc-common all 1.2.6-3 [7444 B] Get:7 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libk5crypto3 ppc64el 1.17-10ubuntu1 [105 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgssapi-krb5-2 ppc64el 1.17-10ubuntu1 [135 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libkrb5-3 ppc64el 1.17-10ubuntu1 [375 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libkrb5support0 ppc64el 1.17-10ubuntu1 [34.8 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtirpc-dev ppc64el 1.2.6-3 [208 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtirpc3 ppc64el 1.2.6-3 [89.2 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libisl23 ppc64el 0.23-1 [713 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcc1-0 ppc64el 10.2.0-20ubuntu1 [42.2 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main ppc64el gcc-10-base ppc64el 10.2.0-20ubuntu1 [19.6 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgcc-s1 ppc64el 10.2.0-20ubuntu1 [30.1 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgomp1 ppc64el 10.2.0-20ubuntu1 [108 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libitm1 ppc64el 10.2.0-20ubuntu1 [28.6 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libatomic1 ppc64el 10.2.0-20ubuntu1 [9992 B] Get:20 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libasan6 ppc64el 10.2.0-20ubuntu1 [2103 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblsan0 ppc64el 10.2.0-20ubuntu1 [847 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtsan0 ppc64el 10.2.0-20ubuntu1 [2030 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libubsan1 ppc64el 10.2.0-20ubuntu1 [799 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libquadmath0 ppc64el 10.2.0-20ubuntu1 [149 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main ppc64el g++-10 ppc64el 10.2.0-20ubuntu1 [41.1 MB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libstdc++-10-dev ppc64el 10.2.0-20ubuntu1 [1793 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgcc-10-dev ppc64el 10.2.0-20ubuntu1 [1252 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main ppc64el gcc-10 ppc64el 10.2.0-20ubuntu1 [44.0 MB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main ppc64el cpp-10 ppc64el 10.2.0-20ubuntu1 [37.6 MB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libstdc++6 ppc64el 10.2.0-20ubuntu1 [540 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmpc3 ppc64el 1.2.0-1 [47.1 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libctf0 ppc64el 2.35.50.20201207-0ubuntu1 [85.5 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libctf-nobfd0 ppc64el 2.35.50.20201207-0ubuntu1 [85.7 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libbinutils ppc64el 2.35.50.20201207-0ubuntu1 [534 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el binutils-common ppc64el 2.35.50.20201207-0ubuntu1 [216 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el binutils ppc64el 2.35.50.20201207-0ubuntu1 [3384 B] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.35.50.20201207-0ubuntu1 [1827 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libc6 ppc64el 2.32-0ubuntu5 [2673 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main ppc64el base-files ppc64el 11ubuntu16 [60.7 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main ppc64el bash ppc64el 5.1~rc3-1ubuntu1 [755 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main ppc64el bsdutils ppc64el 1:2.36.1-1ubuntu2 [91.9 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el coreutils ppc64el 8.32-4ubuntu2 [1411 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main ppc64el tar ppc64el 1.32+dfsg-1 [317 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dpkg ppc64el 1.20.5ubuntu3 [1199 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dash ppc64el 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 [101 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main ppc64el grep ppc64el 3.6-1 [160 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main ppc64el login ppc64el 1:4.8.1-1ubuntu7 [223 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libncursesw6 ppc64el 6.2+20201114-1 [153 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libncurses6 ppc64el 6.2+20201114-1 [122 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libtinfo6 ppc64el 6.2+20201114-1 [104 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el ncurses-bin ppc64el 6.2+20201114-1 [180 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main ppc64el perl-modules-5.32 all 5.32.0-5 [2754 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libperl5.32 ppc64el 5.32.0-5 [4037 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main ppc64el perl ppc64el 5.32.0-5 [225 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main ppc64el perl-base ppc64el 5.32.0-5 [1546 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main ppc64el util-linux ppc64el 2.36.1-1ubuntu2 [1118 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libdebconfclient0 ppc64el 0.255ubuntu1 [6148 B] Get:58 http://ftpmaster.internal/ubuntu hirsute/main ppc64el base-passwd ppc64el 3.5.48 [49.6 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el init-system-helpers all 1.59 [38.2 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libc-bin ppc64el 2.32-0ubuntu5 [637 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el ncurses-base all 6.2+20201114-1 [18.5 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main ppc64el sysvinit-utils ppc64el 2.96-5ubuntu1 [22.8 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgcrypt20 ppc64el 1.8.7-2ubuntu1 [444 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblz4-1 ppc64el 1.9.3-0ubuntu1 [70.0 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main ppc64el systemd-sysv ppc64el 246.6-5ubuntu1 [10.3 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libaudit-common all 1:2.8.5-3ubuntu2 [4092 B] Get:67 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcap-ng0 ppc64el 0.7.9-2.2build1 [11.7 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libaudit1 ppc64el 1:2.8.5-3ubuntu2 [42.5 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libpcre2-8-0 ppc64el 10.35-2 [204 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libselinux1 ppc64el 3.1-2build1 [81.9 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsemanage-common all 3.1-1build1 [10.1 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsemanage1 ppc64el 3.1-1build1 [97.0 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main ppc64el passwd ppc64el 1:4.8.1-1ubuntu7 [804 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el adduser all 3.118ubuntu3 [163 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main ppc64el systemd-timesyncd ppc64el 246.6-5ubuntu1 [28.8 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libapparmor1 ppc64el 3.0.0-0ubuntu4 [39.9 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcap2 ppc64el 1:2.44-1 [19.8 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libblkid1 ppc64el 2.36.1-1ubuntu2 [151 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libudev1 ppc64el 246.6-5ubuntu1 [82.8 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.167-1ubuntu4 [157 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libuuid1 ppc64el 2.36.1-1ubuntu2 [23.1 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcryptsetup12 ppc64el 2:2.3.4-1ubuntu1 [228 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libidn2-0 ppc64el 2.3.0-4 [55.3 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libip4tc2 ppc64el 1.8.5-3ubuntu4 [22.0 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmount1 ppc64el 2.36.1-1ubuntu2 [166 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libseccomp2 ppc64el 2.4.3-1ubuntu5 [48.0 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main ppc64el mount ppc64el 2.36.1-1ubuntu2 [128 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main ppc64el systemd ppc64el 246.6-5ubuntu1 [4893 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsystemd0 ppc64el 246.6-5ubuntu1 [315 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libapt-pkg6.0 ppc64el 2.1.12 [927 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/main ppc64el apt ppc64el 2.1.12 [1328 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el init ppc64el 1.59 [6168 B] Get:93 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsmartcols1 ppc64el 2.36.1-1ubuntu2 [107 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el readline-common all 8.1~rc3-1 [54.1 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libreadline8 ppc64el 8.1~rc3-1 [151 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libsqlite3-0 ppc64el 3.34.0-1 [628 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main ppc64el tzdata all 2020d-1ubuntu1 [293 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dpkg-dev all 1.20.5ubuntu3 [758 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libdpkg-perl all 1.20.5ubuntu3 [232 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libfakeroot ppc64el 1.25.3-1.1 [28.6 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el fakeroot ppc64el 1.25.3-1.1 [66.4 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libnpth0 ppc64el 1.6-3 [8640 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 171 MB in 3s (53.4 MB/s) (Reading database ... 12922 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.17-1ubuntu1_ppc64el.deb ... Unpacking libcrypt-dev:ppc64el (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../libc6-dev_2.32-0ubuntu5_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.32-0ubuntu5) over (2.32-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.32-0ubuntu5_ppc64el.deb ... Unpacking libc-dev-bin (2.32-0ubuntu5) over (2.32-0ubuntu3) ... Preparing to unpack .../libcrypt1_1%3a4.4.17-1ubuntu1_ppc64el.deb ... Unpacking libcrypt1:ppc64el (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:ppc64el (1:4.4.17-1ubuntu1) ... (Reading database ... 12921 files and directories currently installed.) Preparing to unpack .../00-linux-libc-dev_5.8.0-32.34+21.04.1_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (5.8.0-32.34+21.04.1) over (5.8.0-25.26) ... Preparing to unpack .../01-libtirpc-common_1.2.6-3_all.deb ... Unpacking libtirpc-common (1.2.6-3) over (1.2.6-1build1) ... 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Setting up libtirpc-common (1.2.6-3) ... Setting up perl-modules-5.32 (5.32.0-5) ... Setting up libsqlite3-0:ppc64el (3.34.0-1) ... Setting up binutils-common:ppc64el (2.35.50.20201207-0ubuntu1) ... Setting up linux-libc-dev:ppc64el (5.8.0-32.34+21.04.1) ... Setting up libctf-nobfd0:ppc64el (2.35.50.20201207-0ubuntu1) ... Setting up libnpth0:ppc64el (1.6-3) ... Setting up libgomp1:ppc64el (10.2.0-20ubuntu1) ... Setting up libfakeroot:ppc64el (1.25.3-1.1) ... Setting up libasan6:ppc64el (10.2.0-20ubuntu1) ... Setting up libkrb5support0:ppc64el (1.17-10ubuntu1) ... Setting up tzdata (2020d-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Dec 7 17:32:52 UTC 2020. Universal Time is now: Mon Dec 7 17:32:52 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1.1) ... Setting up libncurses6:ppc64el (6.2+20201114-1) ... Setting up libquadmath0:ppc64el (10.2.0-20ubuntu1) ... Setting up libmpc3:ppc64el (1.2.0-1) ... 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Setting up libgssapi-krb5-2:ppc64el (1.17-10ubuntu1) ... Setting up libdpkg-perl (1.20.5ubuntu3) ... Setting up binutils-powerpc64le-linux-gnu (2.35.50.20201207-0ubuntu1) ... Setting up libtirpc3:ppc64el (1.2.6-3) ... Setting up binutils (2.35.50.20201207-0ubuntu1) ... Setting up dpkg-dev (1.20.5ubuntu3) ... Setting up libtirpc-dev:ppc64el (1.2.6-3) ... Setting up gcc-10 (10.2.0-20ubuntu1) ... Setting up libc6-dev:ppc64el (2.32-0ubuntu5) ... Setting up libstdc++-10-dev:ppc64el (10.2.0-20ubuntu1) ... Setting up g++-10 (10.2.0-20ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu5) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20375605 ppc64el hirsute-proposed -c chroot:build-PACKAGEBUILD-20375605 --arch=ppc64el --dist=hirsute-proposed --nolog ariba_2.14.6+ds-1build1.dsc Initiating build PACKAGEBUILD-20375605 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-126-generic #129-Ubuntu SMP Mon Nov 23 18:53:23 UTC 2020 ppc64le sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-ppc64el-016.buildd +==============================================================================+ | ariba 2.14.6+ds-1build1 (ppc64el) Mon, 07 Dec 2020 17:32:53 +0000 | +==============================================================================+ Package: ariba Version: 2.14.6+ds-1build1 Source Version: 2.14.6+ds-1build1 Distribution: hirsute-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20375605/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ariba_2.14.6+ds-1build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/ariba-MQMvM9/ariba-2.14.6+ds' with '<>' I: NOTICE: Log filtering will replace 'build/ariba-MQMvM9' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-BEVWee/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-BEVWee/apt_archive ./ InRelease Get:2 copy:/<>/resolver-BEVWee/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-BEVWee/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-BEVWee/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-BEVWee/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (99.1 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 860 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-BEVWee/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [860 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 860 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14856 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-biopython, python3-all-dev, python3-dendropy, python3-setuptools, python3-pymummer (>= 0.10.2), python3-pysam (>= 0.9.1), python3-nose (>= 1.3), python3-bs4, python3-matplotlib, python3-tk, bowtie2 (>= 2.1.0), cd-hit, mash, libminimap-dev, libfml-dev (>= 0.1-4~), mummer, fastaq (>= 3.12.0), help2man, asciidoctor Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-biopython, python3-all-dev, python3-dendropy, python3-setuptools, python3-pymummer (>= 0.10.2), python3-pysam (>= 0.9.1), python3-nose (>= 1.3), python3-bs4, python3-matplotlib, python3-tk, bowtie2 (>= 2.1.0), cd-hit, mash, libminimap-dev, libfml-dev (>= 0.1-4~), mummer, fastaq (>= 3.12.0), help2man, asciidoctor dpkg-deb: building package 'sbuild-build-depends-ariba-dummy' in '/<>/resolver-BEVWee/apt_archive/sbuild-build-depends-ariba-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-ariba-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-BEVWee/apt_archive ./ InRelease Get:2 copy:/<>/resolver-BEVWee/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-BEVWee/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-BEVWee/apt_archive ./ Sources [670 B] Get:5 copy:/<>/resolver-BEVWee/apt_archive ./ Packages [729 B] Fetched 2362 B in 0s (127 kB/s) Reading package lists... Reading package lists... Install ariba build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev blt bowtie2 bsdextrautils cd-hit debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz fastaq file fontconfig-config fonts-lyx gawk gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas3 libbrotli1 libbsd0 libcapnp-0.7.0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfml-dev libfml0 libfontconfig1 libfreetype6 libgfortran5 libglib2.0-0 libgsl25 libgslcblas0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhx509-5-heimdal libicu67 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libkrb5-26-heimdal liblapack3 liblcms2-2 libldap-2.4-2 liblocale-gettext-perl libmagic-mgc libmagic1 libminimap-dev libminimap0 libmurmurhash2 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libroken18-heimdal librtmp1 libruby2.7 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libyaml-0-2 m4 mailcap man-db mash media-types mime-support mummer node-jquery po-debconf python-matplotlib-data python3 python3-all python3-all-dev python3-biopython python3-bs4 python3-certifi python3-cycler python3-dateutil python3-dendropy python3-dev python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-nose python3-numpy python3-pil python3-pkg-resources python3-pymummer python3-pyparsing python3-pysam python3-reportlab python3-reportlab-accel python3-setuptools python3-six python3-soupsieve python3-tk python3.8 python3.8-minimal python3.9 python3.9-dev python3.9-minimal rake ruby ruby-asciidoctor ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration samtools tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo bowtie2-examples dh-make gawk-doc gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-renderpm python3-psycopg2 python3-scipy raxml t-coffee wise w3-dtd-mathml python-cycler-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft python-nose-doc gfortran python-numpy-doc python3-pytest python3-numpy-dbg python-pil-doc python3-pil-dbg python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-setuptools-doc tix python3-tk-dbg python3.8-venv python3.8-doc binfmt-support python3.9-venv python3.9-doc ri ruby-dev bundler cwltool Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libjs-sizzle libmail-sendmail-perl python-biopython-doc ncbi-blast+ python3-chardet python3-lxml python3-olefile python3-renderpm zip fonts-lato The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev blt bowtie2 bsdextrautils cd-hit debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz fastaq file fontconfig-config fonts-lyx gawk gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas3 libbrotli1 libbsd0 libcapnp-0.7.0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfml-dev libfml0 libfontconfig1 libfreetype6 libgfortran5 libglib2.0-0 libgsl25 libgslcblas0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhx509-5-heimdal libicu67 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libkrb5-26-heimdal liblapack3 liblcms2-2 libldap-2.4-2 liblocale-gettext-perl libmagic-mgc libmagic1 libminimap-dev libminimap0 libmurmurhash2 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libroken18-heimdal librtmp1 libruby2.7 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libyaml-0-2 m4 mailcap man-db mash media-types mime-support mummer node-jquery po-debconf python-matplotlib-data python3 python3-all python3-all-dev python3-biopython python3-bs4 python3-certifi python3-cycler python3-dateutil python3-dendropy python3-dev python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-nose python3-numpy python3-pil python3-pkg-resources python3-pymummer python3-pyparsing python3-pysam python3-reportlab python3-reportlab-accel python3-setuptools python3-six python3-soupsieve python3-tk python3.8 python3.8-minimal python3.9 python3.9-dev python3.9-minimal rake ruby ruby-asciidoctor ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration samtools sbuild-build-depends-ariba-dummy tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common zlib1g-dev 0 upgraded, 170 newly installed, 0 to remove and 0 not upgraded. Need to get 77.6 MB of archives. After this operation, 367 MB of additional disk space will be used. Get:1 copy:/<>/resolver-BEVWee/apt_archive ./ sbuild-build-depends-ariba-dummy 0.invalid.0 [1024 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblocale-gettext-perl ppc64el 1.07-4build1 [17.2 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpython3.9-minimal ppc64el 3.9.1~rc1-2 [749 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libexpat1 ppc64el 2.2.10-1 [77.6 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3.9-minimal ppc64el 3.9.1~rc1-2 [1830 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-minimal ppc64el 3.9.0-3ubuntu1 [24.0 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main ppc64el media-types all 1.0.1ubuntu1 [10.9 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main ppc64el mailcap all 3.67ubuntu1 [24.2 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main ppc64el mime-support all 3.66 [3696 B] Get:10 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpython3.9-stdlib ppc64el 3.9.1~rc1-2 [1749 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3.9 ppc64el 3.9.1~rc1-2 [413 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpython3-stdlib ppc64el 3.9.0-3ubuntu1 [7292 B] Get:13 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3 ppc64el 3.9.0-3ubuntu1 [48.8 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpython3.8-minimal ppc64el 3.8.6-1 [712 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3.8-minimal ppc64el 3.8.6-1 [1755 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main ppc64el bsdextrautils ppc64el 2.36.1-1ubuntu2 [83.5 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libuchardet0 ppc64el 0.0.7-1 [71.0 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main ppc64el groff-base ppc64el 1.22.4-5 [922 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpipeline1 ppc64el 1.5.3-1 [29.6 kB] Get:20 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http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpython3.8-stdlib ppc64el 3.8.6-1 [1727 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxml2 ppc64el 2.9.10+dfsg-6.3 [655 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libyaml-0-2 ppc64el 0.2.2-1 [55.8 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-pkg-resources all 50.3.0-1 [129 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3.8 ppc64el 3.8.6-1 [376 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ucf all 3.0043 [56.1 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main ppc64el gettext-base ppc64el 0.19.8.1-10build1 [52.5 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpsl5 ppc64el 0.21.0-1.1ubuntu1 [54.0 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxau6 ppc64el 1:1.0.9-0ubuntu1 [7876 B] Get:39 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxdmcp6 ppc64el 1:1.1.3-0ubuntu1 [11.8 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxcb1 ppc64el 1.14-2 [50.2 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libx11-data all 2:1.6.12-1 [113 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libx11-6 ppc64el 2:1.6.12-1 [638 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxext6 ppc64el 2:1.3.4-0ubuntu1 [35.1 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main ppc64el rubygems-integration all 1.17.3 [5208 B] Get:45 http://ftpmaster.internal/ubuntu hirsute/main ppc64el rake all 13.0.1-4 [61.6 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ruby-minitest all 5.13.0-1 [40.9 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ruby-net-telnet all 0.1.1-2 [12.6 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ruby-power-assert all 1.1.7-1 [11.4 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ruby-test-unit all 3.3.5-1 [73.2 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ruby-xmlrpc all 0.3.0-2 [23.8 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libruby2.7 ppc64el 2.7.2-3 [3793 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ruby2.7 ppc64el 2.7.2-3 [95.7 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el ruby-rubygems all 3.2.0~rc.2-4 [217 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el ruby ppc64el 1:2.7+2 [5276 B] Get:55 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el ruby-asciidoctor all 2.0.10-2 [166 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el asciidoctor all 2.0.10-2 [40.3 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main ppc64el m4 ppc64el 1.4.18-4 [210 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main ppc64el autoconf all 2.69-11.1 [321 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main ppc64el autotools-dev all 20180224.1 [39.6 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main ppc64el automake all 1:1.16.3-1ubuntu1 [552 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main ppc64el autopoint all 0.19.8.1-10build1 [412 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtcl8.6 ppc64el 8.6.10+dfsg-1 [1008 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libbrotli1 ppc64el 1.0.9-2build1 [297 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libfreetype6 ppc64el 2.10.2+dfsg-4 [427 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el ttf-bitstream-vera all 1.10-8 [352 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main ppc64el fontconfig-config all 2.13.1-4.2ubuntu2 [28.6 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libfontconfig1 ppc64el 2.13.1-4.2ubuntu2 [150 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxrender1 ppc64el 1:0.9.10-1 [17.6 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxft2 ppc64el 2.3.3-0ubuntu1 [46.7 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main ppc64el x11-common all 1:7.7+19ubuntu15 [22.2 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxss1 ppc64el 1:1.2.3-1 [8964 B] Get:72 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtk8.6 ppc64el 8.6.10-1 [790 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-4 [648 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main ppc64el blt ppc64el 2.5.3+dfsg-4 [4948 B] Get:75 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el cd-hit ppc64el 4.8.1-3 [531 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtool all 2.4.6-14 [161 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dh-autoreconf all 19 [16.1 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libdebhelper-perl all 13.3ubuntu1 [64.1 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsub-override-perl all 0.09-2 [9532 B] Get:81 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:83 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dwz ppc64el 0.13+20201015-2 [156 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcroco3 ppc64el 0.6.13-1 [92.1 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main ppc64el gettext ppc64el 0.19.8.1-10build1 [959 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main ppc64el intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main ppc64el po-debconf all 1.0.21 [233 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el debhelper all 13.3ubuntu1 [881 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-lib2to3 all 3.9.0-1 [76.3 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-distutils all 3.9.0-1 [142 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el dh-python all 4.20201102ubuntu1 [92.9 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libroken18-heimdal ppc64el 7.7.0+dfsg-2 [46.4 kB] Get:93 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libasn1-8-heimdal ppc64el 7.7.0+dfsg-2 [176 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libheimbase1-heimdal ppc64el 7.7.0+dfsg-2 [32.4 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libhcrypto4-heimdal ppc64el 7.7.0+dfsg-2 [108 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libwind0-heimdal ppc64el 7.7.0+dfsg-2 [48.9 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libhx509-5-heimdal ppc64el 7.7.0+dfsg-2 [120 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libkrb5-26-heimdal ppc64el 7.7.0+dfsg-2 [234 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libheimntlm0-heimdal ppc64el 7.7.0+dfsg-2 [17.4 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgssapi3-heimdal ppc64el 7.7.0+dfsg-2 [105 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsasl2-modules-db ppc64el 2.1.27+dfsg-2ubuntu1 [16.8 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsasl2-2 ppc64el 2.1.27+dfsg-2ubuntu1 [60.0 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libldap-2.4-2 ppc64el 2.4.53+dfsg-1ubuntu5 [177 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libnghttp2-14 ppc64el 1.42.0-1 [83.7 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build2 [59.2 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libssh-4 ppc64el 0.9.5-1 [195 kB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcurl3-gnutls ppc64el 7.72.0-1ubuntu1 [259 kB] Get:108 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libdeflate0 ppc64el 1.6-1 [64.0 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libhts3 ppc64el 1.11-2 [426 kB] Get:110 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el samtools ppc64el 1.11-1 [590 kB] Get:111 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el fastaq all 3.17.0-3 [47.7 kB] Get:112 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el fonts-lyx all 2.3.6-1 [159 kB] Get:113 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el help2man ppc64el 1.47.16 [174 kB] Get:114 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libblas3 ppc64el 3.9.0-3ubuntu1 [106 kB] Get:115 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcapnp-0.7.0 ppc64el 0.7.0-7 [1052 kB] Get:116 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libexpat1-dev ppc64el 2.2.10-1 [122 kB] Get:117 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libfml0 ppc64el 0.1-13 [77.9 kB] Get:118 http://ftpmaster.internal/ubuntu hirsute/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2ubuntu4 [166 kB] Get:119 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libfml-dev ppc64el 0.1-13 [90.9 kB] Get:120 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgfortran5 ppc64el 10.2.0-20ubuntu1 [433 kB] Get:121 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libgslcblas0 ppc64el 2.6+dfsg-2 [206 kB] Get:122 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libgsl25 ppc64el 2.6+dfsg-2 [1083 kB] Get:123 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libimagequant0 ppc64el 2.12.2-1.1 [35.6 kB] Get:124 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libjpeg-turbo8 ppc64el 2.0.3-0ubuntu2 [155 kB] Get:125 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu8 [2146 B] Get:126 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el node-jquery all 3.5.1+dfsg+~3.5.4-3 [396 kB] Get:127 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libjs-jquery all 3.5.1+dfsg+~3.5.4-3 [2364 B] Get:128 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libjs-jquery-ui all 1.12.1+dfsg-7 [231 kB] Get:129 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblapack3 ppc64el 3.9.0-3ubuntu1 [1659 kB] Get:130 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblcms2-2 ppc64el 2.9-4 [186 kB] Get:131 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libminimap0 ppc64el 0.2-5 [24.4 kB] Get:132 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libminimap-dev ppc64el 0.2-5 [35.5 kB] Get:133 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libmurmurhash2 ppc64el 1.5-2 [6640 B] Get:134 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpython3.9 ppc64el 3.9.1~rc1-2 [1780 kB] Get:135 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpython3.9-dev ppc64el 3.9.1~rc1-2 [4161 kB] Get:136 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpython3-dev ppc64el 3.9.0-3ubuntu1 [7456 B] Get:137 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpython3-all-dev ppc64el 3.9.0-3ubuntu1 [1116 B] Get:138 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libjbig0 ppc64el 2.1-3.1build1 [26.9 kB] Get:139 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libwebp6 ppc64el 0.6.1-2 [225 kB] Get:140 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtiff5 ppc64el 4.1.0+git191117-2build1 [192 kB] Get:141 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libwebpdemux2 ppc64el 0.6.1-2 [10.1 kB] Get:142 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libwebpmux3 ppc64el 0.6.1-2 [21.0 kB] Get:143 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el mash ppc64el 2.2.2+dfsg-1build2 [151 kB] Get:144 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el mummer ppc64el 3.23+dfsg-6 [680 kB] Get:145 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el python-matplotlib-data all 3.3.2-2 [3803 kB] Get:146 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-all ppc64el 3.9.0-3ubuntu1 [1108 B] Get:147 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3.9-dev ppc64el 3.9.1~rc1-2 [511 kB] Get:148 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-dev ppc64el 3.9.0-3ubuntu1 [1216 B] Get:149 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-all-dev ppc64el 3.9.0-3ubuntu1 [1116 B] Get:150 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-numpy ppc64el 1:1.19.4-1ubuntu1 [7127 kB] Get:151 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-reportlab-accel ppc64el 3.5.55-1 [26.1 kB] Get:152 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-pil ppc64el 8.0.1-1 [435 kB] Get:153 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-reportlab all 3.5.55-1 [553 kB] Get:154 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el python3-biopython ppc64el 1.78+dfsg-4 [1418 kB] Get:155 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-soupsieve all 2.0.1-1 [28.7 kB] Get:156 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-bs4 all 4.9.3-1 [87.0 kB] Get:157 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-certifi all 2020.6.20-1 [150 kB] Get:158 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el python3-six all 1.15.0-2 [12.0 kB] Get:159 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el python3-cycler all 0.10.0-3 [8132 B] Get:160 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-dateutil all 2.8.1-4 [79.8 kB] Get:161 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el python3-dendropy all 4.5.1-1 [270 kB] Get:162 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el python3-kiwisolver ppc64el 1.3.1-1 [293 kB] Get:163 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-pyparsing all 2.4.7-1 [61.4 kB] Get:164 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el python3-matplotlib ppc64el 3.3.2-2 [3459 kB] Get:165 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el python3-nose all 1.3.7-7 [116 kB] Get:166 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el python3-pymummer all 0.11.0-2 [9976 B] Get:167 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el python3-pysam ppc64el 0.15.4+ds-3build1 [2468 kB] Get:168 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-setuptools all 50.3.0-1 [451 kB] Get:169 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3-tk ppc64el 3.9.0-1 [115 kB] Get:170 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el bowtie2 ppc64el 2.4.2-1 [1398 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 77.6 MB in 13s (6007 kB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14856 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-4build1_ppc64el.deb ... Unpacking liblocale-gettext-perl (1.07-4build1) ... Selecting previously unselected package libpython3.9-minimal:ppc64el. Preparing to unpack .../libpython3.9-minimal_3.9.1~rc1-2_ppc64el.deb ... Unpacking libpython3.9-minimal:ppc64el (3.9.1~rc1-2) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../libexpat1_2.2.10-1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.2.10-1) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.1~rc1-2_ppc64el.deb ... Unpacking python3.9-minimal (3.9.1~rc1-2) ... Setting up libpython3.9-minimal:ppc64el (3.9.1~rc1-2) ... Setting up libexpat1:ppc64el (2.2.10-1) ... Setting up python3.9-minimal (3.9.1~rc1-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 15163 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.0-3ubuntu1_ppc64el.deb ... Unpacking python3-minimal (3.9.0-3ubuntu1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_1.0.1ubuntu1_all.deb ... Unpacking media-types (1.0.1ubuntu1) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.67ubuntu1_all.deb ... Unpacking mailcap (3.67ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libpython3.9-stdlib:ppc64el. Preparing to unpack .../4-libpython3.9-stdlib_3.9.1~rc1-2_ppc64el.deb ... Unpacking libpython3.9-stdlib:ppc64el (3.9.1~rc1-2) ... Selecting previously unselected package python3.9. Preparing to unpack .../5-python3.9_3.9.1~rc1-2_ppc64el.deb ... Unpacking python3.9 (3.9.1~rc1-2) ... 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Unpacking bsdextrautils (2.36.1-1ubuntu2) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../4-libuchardet0_0.0.7-1_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../5-groff-base_1.22.4-5_ppc64el.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../6-libpipeline1_1.5.3-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../7-man-db_2.9.3-2_ppc64el.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libsigsegv2:ppc64el. Preparing to unpack .../8-libsigsegv2_2.12-2build1_ppc64el.deb ... Unpacking libsigsegv2:ppc64el (2.12-2build1) ... Setting up libsigsegv2:ppc64el (2.12-2build1) ... Selecting previously unselected package gawk. (Reading database ... 16388 files and directories currently installed.) Preparing to unpack .../000-gawk_1%3a5.0.1+dfsg-1_ppc64el.deb ... Unpacking gawk (1:5.0.1+dfsg-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.39-3_ppc64el.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../002-libmagic1_1%3a5.39-3_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.39-3_ppc64el.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package libbsd0:ppc64el. Preparing to unpack .../004-libbsd0_0.10.0-1_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.10.0-1) ... Selecting previously unselected package libelf1:ppc64el. Preparing to unpack .../005-libelf1_0.182-1_ppc64el.deb ... Unpacking libelf1:ppc64el (0.182-1) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../006-libglib2.0-0_2.66.3-2_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.66.3-2) ... Selecting previously unselected package libicu67:ppc64el. Preparing to unpack .../007-libicu67_67.1-4_ppc64el.deb ... Unpacking libicu67:ppc64el (67.1-4) ... Selecting previously unselected package libpython3.8-stdlib:ppc64el. Preparing to unpack .../008-libpython3.8-stdlib_3.8.6-1_ppc64el.deb ... Unpacking libpython3.8-stdlib:ppc64el (3.8.6-1) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../009-libxml2_2.9.10+dfsg-6.3_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.10+dfsg-6.3) ... Selecting previously unselected package libyaml-0-2:ppc64el. Preparing to unpack .../010-libyaml-0-2_0.2.2-1_ppc64el.deb ... Unpacking libyaml-0-2:ppc64el (0.2.2-1) ... Selecting previously unselected package python3-pkg-resources. 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Unpacking libxrender1:ppc64el (1:0.9.10-1) ... Selecting previously unselected package libxft2:ppc64el. Preparing to unpack .../047-libxft2_2.3.3-0ubuntu1_ppc64el.deb ... Unpacking libxft2:ppc64el (2.3.3-0ubuntu1) ... Selecting previously unselected package x11-common. Preparing to unpack .../048-x11-common_1%3a7.7+19ubuntu15_all.deb ... dpkg-query: no packages found matching nux-tools Unpacking x11-common (1:7.7+19ubuntu15) ... Selecting previously unselected package libxss1:ppc64el. Preparing to unpack .../049-libxss1_1%3a1.2.3-1_ppc64el.deb ... Unpacking libxss1:ppc64el (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:ppc64el. Preparing to unpack .../050-libtk8.6_8.6.10-1_ppc64el.deb ... Unpacking libtk8.6:ppc64el (8.6.10-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../051-tk8.6-blt2.5_2.5.3+dfsg-4_ppc64el.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-4) ... Selecting previously unselected package blt. 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Preparing to unpack .../070-libroken18-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libroken18-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libasn1-8-heimdal:ppc64el. Preparing to unpack .../071-libasn1-8-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libasn1-8-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libheimbase1-heimdal:ppc64el. Preparing to unpack .../072-libheimbase1-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libheimbase1-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libhcrypto4-heimdal:ppc64el. Preparing to unpack .../073-libhcrypto4-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libhcrypto4-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libwind0-heimdal:ppc64el. Preparing to unpack .../074-libwind0-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libwind0-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libhx509-5-heimdal:ppc64el. 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Selecting previously unselected package libsasl2-2:ppc64el. Preparing to unpack .../080-libsasl2-2_2.1.27+dfsg-2ubuntu1_ppc64el.deb ... Unpacking libsasl2-2:ppc64el (2.1.27+dfsg-2ubuntu1) ... Selecting previously unselected package libldap-2.4-2:ppc64el. Preparing to unpack .../081-libldap-2.4-2_2.4.53+dfsg-1ubuntu5_ppc64el.deb ... Unpacking libldap-2.4-2:ppc64el (2.4.53+dfsg-1ubuntu5) ... Selecting previously unselected package libnghttp2-14:ppc64el. Preparing to unpack .../082-libnghttp2-14_1.42.0-1_ppc64el.deb ... Unpacking libnghttp2-14:ppc64el (1.42.0-1) ... Selecting previously unselected package librtmp1:ppc64el. Preparing to unpack .../083-librtmp1_2.4+20151223.gitfa8646d.1-2build2_ppc64el.deb ... Unpacking librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build2) ... Selecting previously unselected package libssh-4:ppc64el. Preparing to unpack .../084-libssh-4_0.9.5-1_ppc64el.deb ... Unpacking libssh-4:ppc64el (0.9.5-1) ... Selecting previously unselected package libcurl3-gnutls:ppc64el. Preparing to unpack .../085-libcurl3-gnutls_7.72.0-1ubuntu1_ppc64el.deb ... Unpacking libcurl3-gnutls:ppc64el (7.72.0-1ubuntu1) ... Selecting previously unselected package libdeflate0:ppc64el. Preparing to unpack .../086-libdeflate0_1.6-1_ppc64el.deb ... Unpacking libdeflate0:ppc64el (1.6-1) ... Selecting previously unselected package libhts3:ppc64el. Preparing to unpack .../087-libhts3_1.11-2_ppc64el.deb ... Unpacking libhts3:ppc64el (1.11-2) ... Selecting previously unselected package samtools. Preparing to unpack .../088-samtools_1.11-1_ppc64el.deb ... Unpacking samtools (1.11-1) ... Selecting previously unselected package fastaq. Preparing to unpack .../089-fastaq_3.17.0-3_all.deb ... Unpacking fastaq (3.17.0-3) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../090-fonts-lyx_2.3.6-1_all.deb ... Unpacking fonts-lyx (2.3.6-1) ... Selecting previously unselected package help2man. Preparing to unpack .../091-help2man_1.47.16_ppc64el.deb ... Unpacking help2man (1.47.16) ... Selecting previously unselected package libblas3:ppc64el. Preparing to unpack .../092-libblas3_3.9.0-3ubuntu1_ppc64el.deb ... Unpacking libblas3:ppc64el (3.9.0-3ubuntu1) ... Selecting previously unselected package libcapnp-0.7.0:ppc64el. Preparing to unpack .../093-libcapnp-0.7.0_0.7.0-7_ppc64el.deb ... Unpacking libcapnp-0.7.0:ppc64el (0.7.0-7) ... Selecting previously unselected package libexpat1-dev:ppc64el. Preparing to unpack .../094-libexpat1-dev_2.2.10-1_ppc64el.deb ... Unpacking libexpat1-dev:ppc64el (2.2.10-1) ... Selecting previously unselected package libfml0:ppc64el. Preparing to unpack .../095-libfml0_0.1-13_ppc64el.deb ... Unpacking libfml0:ppc64el (0.1-13) ... Selecting previously unselected package zlib1g-dev:ppc64el. Preparing to unpack .../096-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu4_ppc64el.deb ... Unpacking zlib1g-dev:ppc64el (1:1.2.11.dfsg-2ubuntu4) ... Selecting previously unselected package libfml-dev:ppc64el. Preparing to unpack .../097-libfml-dev_0.1-13_ppc64el.deb ... Unpacking libfml-dev:ppc64el (0.1-13) ... Selecting previously unselected package libgfortran5:ppc64el. Preparing to unpack .../098-libgfortran5_10.2.0-20ubuntu1_ppc64el.deb ... Unpacking libgfortran5:ppc64el (10.2.0-20ubuntu1) ... Selecting previously unselected package libgslcblas0:ppc64el. Preparing to unpack .../099-libgslcblas0_2.6+dfsg-2_ppc64el.deb ... Unpacking libgslcblas0:ppc64el (2.6+dfsg-2) ... Selecting previously unselected package libgsl25:ppc64el. Preparing to unpack .../100-libgsl25_2.6+dfsg-2_ppc64el.deb ... Unpacking libgsl25:ppc64el (2.6+dfsg-2) ... Selecting previously unselected package libimagequant0:ppc64el. Preparing to unpack .../101-libimagequant0_2.12.2-1.1_ppc64el.deb ... Unpacking libimagequant0:ppc64el (2.12.2-1.1) ... Selecting previously unselected package libjpeg-turbo8:ppc64el. 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Selecting previously unselected package liblcms2-2:ppc64el. Preparing to unpack .../108-liblcms2-2_2.9-4_ppc64el.deb ... Unpacking liblcms2-2:ppc64el (2.9-4) ... Selecting previously unselected package libminimap0. Preparing to unpack .../109-libminimap0_0.2-5_ppc64el.deb ... Unpacking libminimap0 (0.2-5) ... Selecting previously unselected package libminimap-dev. Preparing to unpack .../110-libminimap-dev_0.2-5_ppc64el.deb ... Unpacking libminimap-dev (0.2-5) ... Selecting previously unselected package libmurmurhash2:ppc64el. Preparing to unpack .../111-libmurmurhash2_1.5-2_ppc64el.deb ... Unpacking libmurmurhash2:ppc64el (1.5-2) ... Selecting previously unselected package libpython3.9:ppc64el. Preparing to unpack .../112-libpython3.9_3.9.1~rc1-2_ppc64el.deb ... Unpacking libpython3.9:ppc64el (3.9.1~rc1-2) ... Selecting previously unselected package libpython3.9-dev:ppc64el. Preparing to unpack .../113-libpython3.9-dev_3.9.1~rc1-2_ppc64el.deb ... Unpacking libpython3.9-dev:ppc64el (3.9.1~rc1-2) ... Selecting previously unselected package libpython3-dev:ppc64el. Preparing to unpack .../114-libpython3-dev_3.9.0-3ubuntu1_ppc64el.deb ... Unpacking libpython3-dev:ppc64el (3.9.0-3ubuntu1) ... Selecting previously unselected package libpython3-all-dev:ppc64el. Preparing to unpack .../115-libpython3-all-dev_3.9.0-3ubuntu1_ppc64el.deb ... Unpacking libpython3-all-dev:ppc64el (3.9.0-3ubuntu1) ... Selecting previously unselected package libjbig0:ppc64el. Preparing to unpack .../116-libjbig0_2.1-3.1build1_ppc64el.deb ... Unpacking libjbig0:ppc64el (2.1-3.1build1) ... Selecting previously unselected package libwebp6:ppc64el. Preparing to unpack .../117-libwebp6_0.6.1-2_ppc64el.deb ... Unpacking libwebp6:ppc64el (0.6.1-2) ... Selecting previously unselected package libtiff5:ppc64el. Preparing to unpack .../118-libtiff5_4.1.0+git191117-2build1_ppc64el.deb ... Unpacking libtiff5:ppc64el (4.1.0+git191117-2build1) ... Selecting previously unselected package libwebpdemux2:ppc64el. Preparing to unpack .../119-libwebpdemux2_0.6.1-2_ppc64el.deb ... Unpacking libwebpdemux2:ppc64el (0.6.1-2) ... Selecting previously unselected package libwebpmux3:ppc64el. Preparing to unpack .../120-libwebpmux3_0.6.1-2_ppc64el.deb ... Unpacking libwebpmux3:ppc64el (0.6.1-2) ... Selecting previously unselected package mash. Preparing to unpack .../121-mash_2.2.2+dfsg-1build2_ppc64el.deb ... Unpacking mash (2.2.2+dfsg-1build2) ... Selecting previously unselected package mummer. Preparing to unpack .../122-mummer_3.23+dfsg-6_ppc64el.deb ... Unpacking mummer (3.23+dfsg-6) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../123-python-matplotlib-data_3.3.2-2_all.deb ... Unpacking python-matplotlib-data (3.3.2-2) ... Selecting previously unselected package python3-all. Preparing to unpack .../124-python3-all_3.9.0-3ubuntu1_ppc64el.deb ... Unpacking python3-all (3.9.0-3ubuntu1) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../125-python3.9-dev_3.9.1~rc1-2_ppc64el.deb ... Unpacking python3.9-dev (3.9.1~rc1-2) ... Selecting previously unselected package python3-dev. Preparing to unpack .../126-python3-dev_3.9.0-3ubuntu1_ppc64el.deb ... Unpacking python3-dev (3.9.0-3ubuntu1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../127-python3-all-dev_3.9.0-3ubuntu1_ppc64el.deb ... Unpacking python3-all-dev (3.9.0-3ubuntu1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../128-python3-numpy_1%3a1.19.4-1ubuntu1_ppc64el.deb ... Unpacking python3-numpy (1:1.19.4-1ubuntu1) ... Selecting previously unselected package python3-reportlab-accel:ppc64el. Preparing to unpack .../129-python3-reportlab-accel_3.5.55-1_ppc64el.deb ... Unpacking python3-reportlab-accel:ppc64el (3.5.55-1) ... Selecting previously unselected package python3-pil:ppc64el. 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Setting up libmagic-mgc (1:5.39-3) ... Setting up libgsl25:ppc64el (2.6+dfsg-2) ... Setting up gawk (1:5.0.1+dfsg-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:ppc64el (0.2.2-1) ... Setting up libglib2.0-0:ppc64el (2.66.3-2) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.6-1) ... Setting up libdebhelper-perl (13.3ubuntu1) ... Setting up libbrotli1:ppc64el (1.0.9-2build1) ... Setting up x11-common (1:7.7+19ubuntu15) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:ppc64el (1.42.0-1) ... Setting up libmagic1:ppc64el (1:5.39-3) ... Setting up libdeflate0:ppc64el (1.6-1) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up m4 (1.4.18-4) ... Setting up rubygems-integration (1.17.3) ... Setting up file (1:5.39-3) ... Setting up libcapnp-0.7.0:ppc64el (0.7.0-7) ... Setting up libfml0:ppc64el (0.1-13) ... Setting up libjbig0:ppc64el (2.1-3.1build1) ... Setting up libsasl2-modules-db:ppc64el (2.1.27+dfsg-2ubuntu1) ... Setting up ruby-minitest (5.13.0-1) ... Setting up libminimap0 (0.2-5) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:ppc64el (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up libexpat1-dev:ppc64el (2.2.10-1) ... Setting up libfreetype6:ppc64el (2.10.2+dfsg-4) ... Setting up ruby-test-unit (3.3.5-1) ... Setting up libx11-data (2:1.6.12-1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build2) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libimagequant0:ppc64el (2.12.2-1.1) ... Setting up mash (2.2.2+dfsg-1build2) ... Setting up libtcl8.6:ppc64el (8.6.10+dfsg-1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libwebp6:ppc64el (0.6.1-2) ... Setting up ucf (3.0043) ... Setting up libjpeg-turbo8:ppc64el (2.0.3-0ubuntu2) ... Setting up libsasl2-2:ppc64el (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:ppc64el (0.9.5-1) ... Setting up libgfortran5:ppc64el (10.2.0-20ubuntu1) ... Setting up libroken18-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up autoconf (2.69-11.1) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-2ubuntu4) ... Setting up python3.8-minimal (3.8.6-1) ... Setting up libuchardet0:ppc64el (0.0.7-1) ... Setting up mummer (3.23+dfsg-6) ... Setting up libsub-override-perl (0.09-2) ... Setting up python-matplotlib-data (3.3.2-2) ... Setting up libwebpmux3:ppc64el (0.6.1-2) ... Setting up libbsd0:ppc64el (0.10.0-1) ... Setting up mailcap (3.67ubuntu1) ... Setting up libelf1:ppc64el (0.182-1) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libxml2:ppc64el (2.9.10+dfsg-6.3) ... Setting up liblocale-gettext-perl (1.07-4build1) ... Setting up node-jquery (3.5.1+dfsg+~3.5.4-3) ... Setting up libpython3.9-stdlib:ppc64el (3.9.1~rc1-2) ... Setting up libpython3-stdlib:ppc64el (3.9.0-3ubuntu1) ... Setting up libheimbase1-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up libjpeg8:ppc64el (8c-2ubuntu8) ... Setting up automake (1:1.16.3-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libxdmcp6:ppc64el (1:1.1.3-0ubuntu1) ... Setting up liblapack3:ppc64el (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up libxcb1:ppc64el (1.14-2) ... Setting up libfml-dev:ppc64el (0.1-13) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-14) ... Setting up fontconfig-config (2.13.1-4.2ubuntu2) ... Setting up libwebpdemux2:ppc64el (0.6.1-2) ... Setting up libasn1-8-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up libhcrypto4-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up help2man (1.47.16) ... Setting up libwind0-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up libpython3.9:ppc64el (3.9.1~rc1-2) ... Setting up libcroco3:ppc64el (0.6.13-1) ... Setting up libminimap-dev (0.2-5) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13+20201015-2) ... Setting up groff-base (1.22.4-5) ... Setting up libx11-6:ppc64el (2:1.6.12-1) ... Setting up libtiff5:ppc64el (4.1.0+git191117-2build1) ... Setting up libfontconfig1:ppc64el (2.13.1-4.2ubuntu2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.4-3) ... Setting up libpython3.8-stdlib:ppc64el (3.8.6-1) ... Setting up python3.8 (3.8.6-1) ... Setting up python3.9 (3.9.1~rc1-2) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libxrender1:ppc64el (1:0.9.10-1) ... Setting up libhx509-5-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up libxext6:ppc64el (2:1.3.4-0ubuntu1) ... Setting up libpython3.9-dev:ppc64el (3.9.1~rc1-2) ... Setting up python3 (3.9.0-3ubuntu1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up bowtie2 (2.4.2-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.15.0-2) ... Setting up python3-pil:ppc64el (8.0.1-1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-7) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-reportlab-accel:ppc64el (3.5.55-1) ... Setting up python3-kiwisolver (1.3.1-1) ... Setting up python3-reportlab (3.5.55-1) ... Setting up python3.9-dev (3.9.1~rc1-2) ... Setting up python3-dateutil (2.8.1-4) ... Setting up libxss1:ppc64el (1:1.2.3-1) ... Setting up python3-lib2to3 (3.9.0-1) ... Setting up python3-soupsieve (2.0.1-1) ... Setting up libkrb5-26-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up python3-pkg-resources (50.3.0-1) ... Setting up python3-distutils (3.9.0-1) ... Setting up dh-python (4.20201102ubuntu1) ... Setting up libxft2:ppc64el (2.3.3-0ubuntu1) ... Setting up libpython3-dev:ppc64el (3.9.0-3ubuntu1) ... Setting up python3-setuptools (50.3.0-1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:ppc64el (8.6.10-1) ... Setting up python3-all (3.9.0-3ubuntu1) ... Setting up python3-nose (1.3.7-7) ... Setting up libheimntlm0-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up python3-bs4 (4.9.3-1) ... Setting up libgssapi3-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up libpython3-all-dev:ppc64el (3.9.0-3ubuntu1) ... Setting up python3-dev (3.9.0-3ubuntu1) ... Setting up python3-numpy (1:1.19.4-1ubuntu1) ... Setting up python3-biopython (1.78+dfsg-4) ... Setting up python3-dendropy (4.5.1-1) ... Setting up python3-all-dev (3.9.0-3ubuntu1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4) ... Setting up python3-matplotlib (3.3.2-2) ... Setting up blt (2.5.3+dfsg-4) ... Setting up libldap-2.4-2:ppc64el (2.4.53+dfsg-1ubuntu5) ... Setting up python3-tk:ppc64el (3.9.0-1) ... Setting up libcurl3-gnutls:ppc64el (7.72.0-1ubuntu1) ... Setting up libhts3:ppc64el (1.11-2) ... Setting up python3-pysam (0.15.4+ds-3build1) ... Setting up samtools (1.11-1) ... Setting up fastaq (3.17.0-3) ... Setting up python3-pymummer (0.11.0-2) ... Setting up rake (13.0.1-4) ... Setting up ruby-rubygems (3.2.0~rc.2-4) ... Setting up libruby2.7:ppc64el (2.7.2-3) ... Setting up dh-autoreconf (19) ... Setting up ruby2.7 (2.7.2-3) ... Setting up debhelper (13.3ubuntu1) ... Setting up ruby (1:2.7+2) ... Setting up ruby-asciidoctor (2.0.10-2) ... Setting up asciidoctor (2.0.10-2) ... Setting up sbuild-build-depends-ariba-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu5) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-126-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.35.50.20201207-0ubuntu1 dpkg-dev_1.20.5ubuntu3 g++-10_10.2.0-20ubuntu1 gcc-10_10.2.0-20ubuntu1 libc6-dev_2.32-0ubuntu5 libstdc++-10-dev_10.2.0-20ubuntu1 libstdc++6_10.2.0-20ubuntu1 linux-libc-dev_5.8.0-32.34+21.04.1 Package versions: adduser_3.118ubuntu3 advancecomp_2.1-2.1build1 apt_2.1.12 asciidoctor_2.0.10-2 autoconf_2.69-11.1 automake_1:1.16.3-1ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1~rc3-1ubuntu1 binutils_2.35.50.20201207-0ubuntu1 binutils-common_2.35.50.20201207-0ubuntu1 binutils-powerpc64le-linux-gnu_2.35.50.20201207-0ubuntu1 blt_2.5.3+dfsg-4 bowtie2_2.4.2-1 bsdextrautils_2.36.1-1ubuntu2 bsdutils_1:2.36.1-1ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 cd-hit_4.8.1-3 coreutils_8.32-4ubuntu2 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.0-20ubuntu1 dash_0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 debconf_1.5.74 debhelper_13.3ubuntu1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20201102ubuntu1 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.5ubuntu3 dpkg-dev_1.20.5ubuntu3 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.3-1.1 fastaq_3.17.0-3 file_1:5.39-3 findutils_4.7.0-1ubuntu2 fontconfig-config_2.13.1-4.2ubuntu2 fonts-lyx_2.3.6-1 g++_4:10.2.0-1ubuntu1 g++-10_10.2.0-20ubuntu1 gawk_1:5.0.1+dfsg-1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.0-20ubuntu1 gcc-10-base_10.2.0-20ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 help2man_1.47.16 hostname_3.23 init_1.59 init-system-helpers_1.59 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_3.0.0-0ubuntu4 libapt-pkg6.0_2.1.12 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan6_10.2.0-20ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.3-7.1 libatomic1_10.2.0-20ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3ubuntu2 libaudit1_1:2.8.5-3ubuntu2 libbinutils_2.35.50.20201207-0ubuntu1 libblas3_3.9.0-3ubuntu1 libblkid1_2.36.1-1ubuntu2 libbrotli1_1.0.9-2build1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu5 libc-dev-bin_2.32-0ubuntu5 libc6_2.32-0ubuntu5 libc6-dev_2.32-0ubuntu5 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1 libcapnp-0.7.0_0.7.0-7 libcc1-0_10.2.0-20ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.4-1ubuntu1 libctf-nobfd0_2.35.50.20201207-0ubuntu1 libctf0_2.35.50.20201207-0ubuntu1 libcurl3-gnutls_7.72.0-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.255ubuntu1 libdebhelper-perl_13.3ubuntu1 libdeflate0_1.6-1 libdevmapper1.02.1_2:1.02.167-1ubuntu4 libdpkg-perl_1.20.5ubuntu3 libelf1_0.182-1 libexpat1_2.2.10-1 libexpat1-dev_2.2.10-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.3-1.1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.9.0-1 libfml-dev_0.1-13 libfml0_0.1-13 libfontconfig1_2.13.1-4.2ubuntu2 libfreetype6_2.10.2+dfsg-4 libgcc-10-dev_10.2.0-20ubuntu1 libgcc-s1_10.2.0-20ubuntu1 libgcrypt20_1.8.7-2ubuntu1 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.0-20ubuntu1 libglib2.0-0_2.66.3-2 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.0-20ubuntu1 libgpg-error0_1.38-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libgssapi-krb5-2_1.17-10ubuntu1 libgssapi3-heimdal_7.7.0+dfsg-2 libhcrypto4-heimdal_7.7.0+dfsg-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.6-2 libhts3_1.11-2 libhx509-5-heimdal_7.7.0+dfsg-2 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libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.21-2build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.35-2 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libpsl5_0.21.0-1.1ubuntu1 libpython3-all-dev_3.9.0-3ubuntu1 libpython3-dev_3.9.0-3ubuntu1 libpython3-stdlib_3.9.0-3ubuntu1 libpython3.8-minimal_3.8.6-1 libpython3.8-stdlib_3.8.6-1 libpython3.9_3.9.1~rc1-2 libpython3.9-dev_3.9.1~rc1-2 libpython3.9-minimal_3.9.1~rc1-2 libpython3.9-stdlib_3.9.1~rc1-2 libquadmath0_10.2.0-20ubuntu1 libreadline8_8.1~rc3-1 libroken18-heimdal_7.7.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libruby2.7_2.7.2-3 libsasl2-2_2.1.27+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27+dfsg-2ubuntu1 libseccomp2_2.4.3-1ubuntu5 libselinux1_3.1-2build1 libsemanage-common_3.1-1build1 libsemanage1_3.1-1build1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.36.1-1ubuntu2 libsqlite3-0_3.34.0-1 libss2_1.45.6-1ubuntu1 libssh-4_0.9.5-1 libssl1.1_1.1.1f-1ubuntu4 libstdc++-10-dev_10.2.0-20ubuntu1 libstdc++6_10.2.0-20ubuntu1 libsub-override-perl_0.09-2 libsystemd0_246.6-5ubuntu1 libtasn1-6_4.16.0-2 libtcl8.6_8.6.10+dfsg-1 libtiff5_4.1.0+git191117-2build1 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtk8.6_8.6.10-1 libtool_2.4.6-14 libtsan0_10.2.0-20ubuntu1 libubsan1_10.2.0-20ubuntu1 libuchardet0_0.0.7-1 libudev1_246.6-5ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36.1-1ubuntu2 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libwind0-heimdal_7.7.0+dfsg-2 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libxau6_1:1.0.9-0ubuntu1 libxcb1_1.14-2 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxft2_2.3.3-0ubuntu1 libxml2_2.9.10+dfsg-6.3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libyaml-0-2_0.2.2-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-32.34+21.04.1 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu7 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 mailcap_3.67ubuntu1 make_4.3-4ubuntu1 man-db_2.9.3-2 mash_2.2.2+dfsg-1build2 mawk_1.3.4.20200120-2 media-types_1.0.1ubuntu1 mime-support_3.66 mount_2.36.1-1ubuntu2 mummer_3.23+dfsg-6 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 node-jquery_3.5.1+dfsg+~3.5.4-3 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu7 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 python-matplotlib-data_3.3.2-2 python3_3.9.0-3ubuntu1 python3-all_3.9.0-3ubuntu1 python3-all-dev_3.9.0-3ubuntu1 python3-biopython_1.78+dfsg-4 python3-bs4_4.9.3-1 python3-certifi_2020.6.20-1 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-4 python3-dendropy_4.5.1-1 python3-dev_3.9.0-3ubuntu1 python3-distutils_3.9.0-1 python3-kiwisolver_1.3.1-1 python3-lib2to3_3.9.0-1 python3-matplotlib_3.3.2-2 python3-minimal_3.9.0-3ubuntu1 python3-nose_1.3.7-7 python3-numpy_1:1.19.4-1ubuntu1 python3-pil_8.0.1-1 python3-pkg-resources_50.3.0-1 python3-pymummer_0.11.0-2 python3-pyparsing_2.4.7-1 python3-pysam_0.15.4+ds-3build1 python3-reportlab_3.5.55-1 python3-reportlab-accel_3.5.55-1 python3-setuptools_50.3.0-1 python3-six_1.15.0-2 python3-soupsieve_2.0.1-1 python3-tk_3.9.0-1 python3.8_3.8.6-1 python3.8-minimal_3.8.6-1 python3.9_3.9.1~rc1-2 python3.9-dev_3.9.1~rc1-2 python3.9-minimal_3.9.1~rc1-2 rake_13.0.1-4 readline-common_8.1~rc3-1 rpcsvc-proto_1.4.2-0ubuntu4 ruby_1:2.7+2 ruby-asciidoctor_2.0.10-2 ruby-minitest_5.13.0-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.7-1 ruby-rubygems_3.2.0~rc.2-4 ruby-test-unit_3.3.5-1 ruby-xmlrpc_0.3.0-2 ruby2.7_2.7.2-3 rubygems-integration_1.17.3 samtools_1.11-1 sbuild-build-depends-ariba-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-5ubuntu1 systemd-sysv_246.6-5ubuntu1 systemd-timesyncd_246.6-5ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.32+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4 ttf-bitstream-vera_1.10-8 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 ucf_3.0043 util-linux_2.36.1-1ubuntu2 x11-common_1:7.7+19ubuntu15 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Dec 7 17:29:21 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ariba_2.14.6+ds-1build1.dsc dpkg-source: info: extracting ariba in /<>/ariba-2.14.6+ds dpkg-source: info: unpacking ariba_2.14.6+ds.orig.tar.xz dpkg-source: info: unpacking ariba_2.14.6+ds-1build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs_for_extension.patch dpkg-source: info: applying use_bwa_compatible_fermi-lite.patch dpkg-source: info: applying add-testdata.patch dpkg-source: info: applying disable-tests-with-internet-access.patch dpkg-source: info: applying support-pymummer-0.11.patch dpkg-source: info: applying run-debian-spades-wrapper.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20375605 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20375605 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20375605 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ariba dpkg-buildpackage: info: source version 2.14.6+ds-1build1 dpkg-buildpackage: info: source distribution hirsute dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/ariba-2.14.6+ds' rm -rf /<>/ariba-2.14.6+ds/debian/man dh_auto_clean -- I: pybuild base:232: python3.9 setup.py clean running clean removing '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build' (and everything under it) 'build/bdist.linux-ppc64el' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it make[1]: Leaving directory '/<>/ariba-2.14.6+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build-arch dh build-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/samtools_variants.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/tb.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/faidx.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/mlst_profile.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/vfdb_parser.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/ref_seq_chooser.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/assembly_variants.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/read_filter.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/clusters.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/refdata_query.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/sequence_variant.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/bam_parse.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/reference_data.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/aln_to_metadata.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/mapping.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/assembly_compare.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/pubmlst_ref_preparer.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/sequence_metadata.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/mlst_reporter.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/mic_plotter.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/ref_preparer.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/card_record.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/__init__.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/common.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/megares_data_finder.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/cdhit.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/histogram.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/report_flag_expander.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/ref_genes_getter.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/summary.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/assembly.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/megares_zip_parser.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/link.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/cluster.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/scaffold_graph.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/summary_cluster_variant.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/flag.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/read_store.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/versions.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/report.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/report_filter.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/external_progs.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/summary_sample.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/summary_cluster.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/pubmlst_getter.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/pubmlst_ref_preparer_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/mlst_reporter_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/samtools_variants_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/ref_preparer_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/flag_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/test_refdata_query.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/assembly_variants_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/read_store_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/common_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/summary_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/mapping_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/read_filter_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/card_record_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/mic_plotter_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/bam_parse_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/ref_seq_chooser_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/report_filter_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/assembly_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/summary_cluster_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/link_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/sequence_metadata_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/ncbi_getter_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/__init__.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/cdhit_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/ref_genes_getter_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/clusters_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/summary_cluster_variant_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/histogram_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/external_progs_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/megares_data_finder_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/cluster_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/report_flag_expander_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/summary_sample_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/mlst_profile_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/sequence_variant_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/versions_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/vfdb_parser_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/reference_data_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/megares_zip_parser_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/faidx_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/pubmlst_getter_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/scaffold_graph_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/tb_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/aln_to_metadata_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/assembly_compare_test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/aln2meta.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/pubmlstget.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/expandflag.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/getref.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/refquery.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/__init__.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/summary.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/test.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/prepareref_tb.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/run.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/micplot.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/flag.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/prepareref.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/reportfilter.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/version.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/pubmlstspecies.py -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data copying ariba/test_run_data/metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_seqs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.json -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.fa.gz -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.gb -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.json -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.json -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_short.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_genes.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_not_gene.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_rename_sequences.out -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.1.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_var_groups.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.params.json -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_rename_file.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init.profile.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_fofn -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.2.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_good.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.out -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.out.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.in -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.profile.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.removed.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_mic_file.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_clean.in -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.vcf -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.1 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.2.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_data_info_file -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/tb_report_to_resistance_dict.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_long.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.1.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa.fai -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.read_store -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.out.csv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_good.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_getter.dbases.xml -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_fasta_file.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/dummy.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_write_report.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.1.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_cat_genes_match_ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_to_fastq.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.rename.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_annotations.csv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.expected.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_init.fofn -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.2 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.2.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_summary_file.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.in -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_ok.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_write_all_links_to_file.out -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_report.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.rename -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_bad.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.3 -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_bad.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.out -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.info.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.rename_info -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 creating /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene running build_ext building 'minimap_ariba' extension creating build creating build/temp.linux-ppc64el-3.9 creating build/temp.linux-ppc64el-3.9/ariba creating build/temp.linux-ppc64el-3.9/ariba/ext powerpc64le-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -fdebug-prefix-map=/<>/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/minimap -I/usr/include/python3.9 -c ariba/ext/minimap_ariba.cpp -o build/temp.linux-ppc64el-3.9/ariba/ext/minimap_ariba.o ariba/ext/minimap_ariba.cpp: In function ‘bool readMappingOk(const mm_reg1_t*, const mm_idx_t*, const kseq_t*, uint32_t)’: ariba/ext/minimap_ariba.cpp:371:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 371 | if (r->qe - r->qs < std::min((unsigned) 50, (int) 0.5 * ks->seq.l)) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ariba/ext/minimap_ariba.cpp:381:26: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 381 | startOk = (r->qs < endTolerance || refLength - r->re < endTolerance); | ~~~~~~^~~~~~~~~~~~~~ ariba/ext/minimap_ariba.cpp:382:60: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 382 | endOk = (ks->seq.l - r->qe < endTolerance || r->rs < endTolerance); | ~~~~~~^~~~~~~~~~~~~~ ariba/ext/minimap_ariba.cpp:386:26: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 386 | startOk = (r->qs < endTolerance || r->rs < endTolerance); | ~~~~~~^~~~~~~~~~~~~~ ariba/ext/minimap_ariba.cpp:386:50: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 386 | startOk = (r->qs < endTolerance || r->rs < endTolerance); | ~~~~~~^~~~~~~~~~~~~~ powerpc64le-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O3 -fdebug-prefix-map=/<>/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.9/ariba/ext/minimap_ariba.o -o /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/minimap_ariba.cpython-39-powerpc64le-linux-gnu.so -lz -lminimap building 'fermilite_ariba' extension powerpc64le-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -fdebug-prefix-map=/<>/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c ariba/ext/fml-asm_ariba.cpp -o build/temp.linux-ppc64el-3.9/ariba/ext/fml-asm_ariba.o powerpc64le-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O3 -fdebug-prefix-map=/<>/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.9/ariba/ext/fml-asm_ariba.o -o /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/fermilite_ariba.cpython-39-powerpc64le-linux-gnu.so -lz -lfml building 'vcfcall_ariba' extension powerpc64le-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -fdebug-prefix-map=/<>/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c ariba/ext/vcfcall_ariba.cpp -o build/temp.linux-ppc64el-3.9/ariba/ext/vcfcall_ariba.o powerpc64le-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O3 -fdebug-prefix-map=/<>/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.9/ariba/ext/vcfcall_ariba.o -o /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/vcfcall_ariba.cpython-39-powerpc64le-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting scripts/ariba -> build/scripts-3.9 changing mode of build/scripts-3.9/ariba from 644 to 755 dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:232: cd /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build; python3.9 -m nose -v WARNING: spades not found in path. Looked for spades.py test _check_coding_seq ... ok test _check_insertion_coords ... ok test _check_seq_lengths_same ... ok test _check_sequences with coding seqs ... ok test _check_sequences with noncoding seqs ... ok test _check_variants_match_sequences ... ok test _insertion_coords ... ok test _load_aln_file ... ok test _load_vars_file bad input files ... ok test _load_vars_file good input file ... ok test _make_cluster_file ... ok test _make_unpadded_insertion_coords ... ok test _make_unpadded_seqs ... ok test _padded_to_unpadded_nt_position ... ok test run coding sequences ... Warning: position has a gap in sequence seq3 corresponding to variant A2D (id1) in sequence seq1 ... Ignoring for seq3 Warning: position has a gap in sequence seq1 corresponding to variant F2E (id2) in sequence seq5 ... Ignoring for seq1 Warning: position has a gap in sequence seq2 corresponding to variant F2E (id2) in sequence seq5 ... Ignoring for seq2 ok test run noncoding sequences ... Warning: position has a gap in sequence seq3 corresponding to variant C5T (id1) in sequence seq1 ... Ignoring for seq3 Warning: position has a gap in sequence seq1 corresponding to variant A5T (id2) in sequence seq5 ... Ignoring for seq1 Warning: position has a gap in sequence seq2 corresponding to variant A5T (id2) in sequence seq5 ... Ignoring for seq2 ok test _unpadded_to_padded_nt_position ... ok test variant_ids_are_unique ... ok test _variants_to_tsv_lines coding sequences ... Warning: position has a gap in sequence seq3 corresponding to variant A2D (id1) in sequence seq1 ... Ignoring for seq3 Warning: position has a gap in sequence seq1 corresponding to variant F2E (id2) in sequence seq5 ... Ignoring for seq1 Warning: position has a gap in sequence seq2 corresponding to variant F2E (id2) in sequence seq5 ... Ignoring for seq2 ok test _variants_to_tsv_lines noncoding sequences ... Warning: position has a gap in sequence seq3 corresponding to variant C5T (id1) in sequence seq1 ... Ignoring for seq3 Warning: position has a gap in sequence seq1 corresponding to variant A5T (id2) in sequence seq5 ... Ignoring for seq1 Warning: position has a gap in sequence seq2 corresponding to variant A5T (id2) in sequence seq5 ... Ignoring for seq2 ok test _find_next_stop_codon ... ok test _find_previous_start_codon ... ok test _gene_from_nucmer_match ... ok test _get_assembled_reference_sequences ... ok test _get_gene_matching_ref ... ok test _longest_nucmer_hit_in_ref ... ok test nucmer_hit_containing_reference_position ... ok test _nucmer_hits_to_assembly_coords ... ok test _nucmer_hits_to_percent_identity ... ok test _nucmer_hits_to_ref_and_qry_coords ... ok test nucmer_hits_to_ref_coords ... ok test _parse_nucmer_coords_file ... ok test ref_cov_per_contig ... ok test _ref_covered_by_at_least_one_full_length_contig ... ok test _ref_has_region_assembled_twice ... ok test _whole_gene_covered_by_nucmer_hits ... ok test _assemble_with_fermilite ... ok test _assemble_with_fermilite fails ... ok test _assemble_with_spades ... SKIP: Spades assembler is optional and is not configured test _assemble_with_spades handles spades fail ... SKIP: Spades assembler is optional and is not configured test _check_spades_log_file ... Error running SPAdes. Cannot continue. This is the error from the log file /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad ... == Error == system call for: "['/foo/bar/SPAdes-3.6.0-Linux/bin/spades', '/spam/eggs/K21/configs/config.info']" finished abnormally, err code: -7 ok test _fix_contig_orientation ... ok test _parse_bam ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam' ok test _run_fermilite ... ok test _run_fermilite when it fails ... ok test filter_mummer_variants ... ok test _get_codon_start ... ok test _get_mummer_variants when there are variants ... ok test _get_mummer_variants when no variants ... ok test _get_remaining_known_ref_variants with amino acids ... ok test _get_remaining_known_ref_variants with nucleotides ... ok test _get_variant_effect ... ok test get_variants presence absence genes ... ok test get_variants variants only ... ok test _get_one_variant_for_one_contig_coding ... ok test _get_one_variant_for_one_contig_non_coding ... ok test parse ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_parse.bam' ok test _sam_to_soft_clipped ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam' [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam' ok test _update_soft_clipped_from_sam ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam' [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam' ok test _update_unmapped_mates_from_sam ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam' [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam' ok test _write_soft_clipped_to_file ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/dummy.bam' ok test _write_unmapped_mates_to_file ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/dummy.bam' ok test _ARO_accession ... ok test _ARO_description ... ok test _ARO_id ... ok test _ARO_name ... ok test _ARO_name_to_fasta_name ... ok test _dna_seqs_and_genbank_ids ... Missing data from foo Missing data from foo Missing data from foo Missing data from foo Missing data from foo Missing data from foo Missing data from foo ok test_get_data (ariba.tests.card_record_test.TestCardRecord) ... ok test snps ... ok test fake_run ... ok test fake_run min_cluster 42 ... ok test fake_run with non-unique names ... ok test _get_clusters_from_bak_file ... ok test_get_run_cmd_with_default_memory ... ok test_get_run_cmd_with_non_default_memory ... ok test_get_run_cmd_with_unlimited_memory ... ok test init_fail_infile_missing ... ok test_init_fail_invalid_memory ... ok test _load_user_clusters_file with bad input files ... ok test _load_user_clusters_file with good input file ... WARNING: ignoring sequence seq6 from clusters file because not in fasta file. This probably means it failed sanity checks - see the log files 01.filter.check_genes.log, 01.filter.check_metadata.log. ok test _load_user_clusters_file with good input file with some renamed ... ok test run ... ok test run_get_clusters_from_file ... ok test run_get_clusters_from_file with renaming ... ok test run with min_cluster_number 42 ... ok test complete run of cluster when assembly fails ... ok test complete run of cluster when choosing ref seq fails ... ok test complete run where samtools calls a snp at a known snp location in a presence/absence noncoding and sample has the var ... ok Test complete run where there is a deleted codon ... ok Test complete run where there is a inserted codon ... ok test complete run where samtools calls a snp at a known snp location in a presence/absence gene ... ok test complete run where samtools calls a snp at a known snp location in a presence/absence noncoding ... ok Test complete run where there is a codon with a SNP and an indel ... ok test complete run of cluster when filtering removes all reads ... ok test complete run where gene extended because too different at end for full nucmer match ... ok test complete run of cluster on a noncoding sequence ... ok test complete run of cluster on a presence absence gene ... ok test complete run of cluster on a variants only gene when variant is present ... ok test complete run of cluster on a variants only gene when variant not present ... ok test complete run of cluster on a variants only gene when variant not present but always report variant ... ok Test complete run where only part of the ref gene is present in the reads ... ok test complete run of cluster when nearest ref is outside cluster ... ok test complete run where samtools calls a snp in a presence/absence noncoding sequence at a known snp position ... ok test complete run where samtools calls a snp in a presence/absence gene ... ok test complete run where samtools calls a snp in a presence/absence noncoding sequence ... ok test complete run where samtools calls a snp at a known snp location in a variant only gene, gene does have variant ... ok test complete run where samtools calls a snp in a variant only gene ... ok test complete run where samtools calls a snp at a known snp location in a variant only gene, gene does not have variant ... ok test complete run where samtools calls a snp in a presence/absence noncoding sequence ... ok test complete run where samtools calls a snp at a known snp location in a presence/absence noncoding and sample does not have the var ... ok test init_fail_files_missing ... ok Test _make_reads_for_assembly when sampling from reads ... ok Test _make_reads_for_assembly when just makes symlinks ... ok Test _number_of_reads_for_assembly ... ok test _write_catted_genes_matching_refs_fasta ... ok test _load_minimap_files ... ok test _load_minimap_insert_histogram ... ok test _load_minimap_out_cluster2representative ... ok test _load_minimap_out_cluster_counts ... ok test _load_minimap_proper_pairs ... ok test _load_reference_data_from_dir ... ok test _load_reference_data_info_file ... ok test test_minimap_reads_to_all_ref_seqs ... ok test complete run with TB amr calling ... ok test _set_insert_size_data ... ok test _write_catted_assembled_seqs_fasta ... ok test _write_catted_assemblies_fasta ... ok test _write_mlst_reports ... ok test_write_report (ariba.tests.clusters_test.TestClusters) ... ok test _write_tb_resistance_calls_json ... ok test cat_files ... ok test rmtree ... ok Test that external programs are found ... ok test write_fa_subset ... ok Test add ... ok Test has ... ok Test __init__ and to_number ... ok Test set_flag ... ok Test __str__ ... ok Test to_comma_separated_string ... ok Test to_long_str ... ok Test add ... ok Test __len__ ... ok Test stats ... ok Test _to_bin ... ok test _distance_to_contig_end ... ok test _distance_to_contig_ends ... ok test link __init__ no links made ... ok test link __init__ link made ... ok test insert_size ... ok test __lt__ ... ok test merge ... ok test sort ... ok test _swap ... ok test bowtie2_index ... ok Test get_total_alignment_score ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam' ok Test run_bowtie2 unsorted ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.out.bowtie2.bam' ok Test run_bowtie2 sorted ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam' ok Test run_bowtie2 unsorted remove both unmapped ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.out.bowtie2_remove_both_unmapped.bam' ok test sam_pair_to_insert ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam' ok test sam_to_fastq ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam' ok test _get_url_for_version ... ok test _zips_from_index_page_string ... ok test _extract_files when all ok ... ok test _extract_files when one missing ... ok test _load_annotations_file ... ok test _load_header_mappings_file ... ok test _write_files ... WARNING: sequence "Only_in_fasta_file" has no record in annotations file WARNING: sequence "Only_in_fasta_file" has no record in header mappings file ok test _bottom_scatter_data ... ok test _filter_top_plot_data ... ok test _get_colours ... ok Test _get_top_plot_data ... ok Test _load_mic_file ... ok Test _load_summary_file ... ok Test _mic_string_to_float ... ok test _ordered_bottom_plot_rows ... ok test _ordered_colunns ... ok test _top_plot_scatter_counts ... ok test _top_plot_scatter_data ... ok test _top_plot_violin_data ... ok test _top_plot_y_ticks ... ok Test get_sequence_type ... ok Test has_gene ... ok test init ... WARNING: Same profile found twice in input file, but two different STs. Going to use the ST with the smaller number (2) ... STs are 2 3 and alleles are nusA:1, rpoB:26, eno:2, gltB:4, lepA:59, nuoL:2, nrdA:5 ok test init ... ok test when all alleles 100% there no variants ... ok test when one gene has a het snp ... ok test when one gene has two het snps ... ok test when allele combination is new ... ok test when one gene missing ... ok test _get_profile_and_fasta_urls ... ok test _get_species_list ... ok test _rename_seqs_in_fasta ... ok test _filter_seq_dict ... WARNING: Median sequence length is 5 but seq1 has length 1 which is too long or short. Removing. WARNING: Median sequence length is 5 but seq5 has length 14 which is too long or short. Removing. ok test _load_fasta_files_and_write_clusters_file ... WARNING: spades not found in path. Looked for spades.py ok test _cdhit_clstr_to_reads ... ok Test clean ... ok Test _compress_and_index_file ... ok Test get_reads fasta pair ... ok Test get_reads fastq interleaved ... ok Test get_reads fastq pair ... ok Test get_reads subset ... ok test _sort_file ... ok test _fix_virulencefinder_fasta_file ... WARNING: found line with ">" not at the start! Fixing. Line:AC>seq3 in file /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa WARNING: found line with ">" at the end! Fixing. Line:AACGT> in file /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa ok test _fasta_to_metadata ... ok test _rename_clusters ... ok test run ... WARNING. 1 sequence(s) excluded. Please see the 01.filter.check_genes.log and 01.filter.check_noncoding.log for details. This will show them: grep REMOVE tmp.ref_preparer_test_run/01.filter.check_genes.log cat tmp.ref_preparer_test_run/01.filter.check_noncoding.log WARNING. Problem with at least one variant. Problem variants are removed. Please see the file tmp.ref_preparer_test_run/01.filter.check_metadata.log for details. ok test run with no metadata input, all sequences are noncoding ... ok test run with noncoding sequences that are outside of the allowed size range ... WARNING. 5 sequence(s) excluded. Please see the 01.filter.check_genes.log and 01.filter.check_noncoding.log for details. This will show them: grep REMOVE tmp.ref_preparer_test_run_noncoding_checks/01.filter.check_genes.log cat tmp.ref_preparer_test_run_noncoding_checks/01.filter.check_noncoding.log WARNING. Problem with at least one variant. Problem variants are removed. Please see the file tmp.ref_preparer_test_run_noncoding_checks/01.filter.check_metadata.log for details. ok test _make_matching_contig_pieces_fasta ... ok Test full run where the best match is in the cluster ... ok Test full run where there is a match in cluster, but better match to seq not in cluster ... ok Test full run where ref seq completely contains another seq outside cluster ... ok Test full run where amount of flanking seq varies ... ok Test full run when nearest match is not in the cluster ... ok Test full run when there is nearest match in cluster, but no nucmer matches ... ok Test all_non_wild_type_variants ... ok Test _check_noncoding_seq ... ok Test cluster_with_cd_hit clusters from file ... ok Test cluster_with_cd_hit do not run cdhit ... ok Test cluster_with_cd_hit ... ok Test _filter_bad_variant_data ... WARNING: sequence "non_coding_not_in_fasta" found in metadata, but not in fasta file. Ignoring it. WARNING: sequence "presence_absence_not_in_fasta" found in metadata, but not in fasta file. Ignoring it. WARNING: sequence "variants_only_not_in_fasta" found in metadata, but not in fasta file. Ignoring it. ok Test __init__ fails when it should ... ok Test init with good input ... ok Test _load_all_fasta_files ... ok Test _load_all_metadata_tsvs ... ok Test _load_fasta_file ... ok Test _load_input_files_and_check_seq_names with bad input ... ok Test _load_input_files_and_check_seq_names with good input ... WARNING: sequence "seq3" found in metadata, but not in fasta file. Ignoring it. ok Test _load_metadata_tsv ... ok Test _load_rename_file ... ok Test _new_seq_name ... ok Test _remove_bad_genes ... ok Test _remove_bad_noncoding_seqs ... ok Test _rename_metadata_set ... ok Test _rename_names_in_metadata ... ok Test _rename_names_in_seq_dict ... ok Test rename_sequences ... ok Test _seq_names_to_rename_dict ... ok Test sequence ... ok Test sequence_type ... ok Test _try_to_get_gene_seq ... ok Test write_cluster_allocation_file ... ok Test _write_metadata_tsv ... ok Test write_seqs_to_fasta ... ok Test _write_sequences_to_files ... ok Test _dict_to_report_line ... ok Test _filter_dicts ... ok Test _filter_list_of_dicts where all fail ... ok Test _filter_list_of_dicts with an essential line but all others fail ... ok Test _filter_list_of_dicts with a line that passes ... ok Test _flag_passes_filter ... ok test __init__ on bad input file ... ok test __init__ on good input file ... ok test_load_report (ariba.tests.report_filter_test.TestReportFilter) ... ok Test _remove_all_after_first_frameshift ... ok Test _remove_all_after_first_frameshift when gene is complete ... ok Test _report_dict_passes_essential_filters ... ok Test _report_dict_passes_non_essential_filters with known vars ... ok Test _report_dict_passes_non_essential_filters with synonymous AA changes ... ok test_report_line_to_dict (ariba.tests.report_filter_test.TestReportFilter) ... ok Test run ... ok Test write_report_tsv ... ok test run ... ok test get_depths_at_position ... ok test _get_read_depths ... ok test _get_variant_positions_from_vcf ... ok test _get_variants ... ok test _make_vcf_and_read_depths_files ... ok test total_depth_per_contig ... ok test variants_in_coords ... ok test _contig_graph_is_consistent ... ok test _make_graph ... ok test _remove_low_cov_links ... ok test update_from_sam ... [E::idx_find_and_load] Could not retrieve index file for '/<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam' ok test write_all_links_to_file ... ok test has_variant ... ok Test init fails on bad lines ... ok test init ok on good input ... ok test __str__ ... ok test to_string ... ok test has_variant ... ok Test init fails on bad variant strings ... ok Test init ok ... ok Test init ok and str ... ok test nucleotide_range ... ok test sanity_check_against_seq with translate False ... ok test sanity_check_against_seq with translate True ... ok Test add_data_dict ... ok Test column_summary_data ... ok test gather_data ... ok test _get_all_nonsynon_variants_set ... ok Test _get_known_noncoding_het_snp ... ok Test _get_nonsynonymous_var ... ok test_has_any_known_variant (ariba.tests.summary_cluster_test.TestSummaryCluster) ... ok Test _has_any_nonsynonymous ... ok Test _has_any_novel_nonsynonymous ... ok Test _has_any_part_of_ref_assembled ... ok Test _has_known_variant ... ok Test _has_match ... ok Test _has_nonsynonymous ... ok Test _has_novel_nonsynonymous ... ok Test has_var_groups ... ok test known_noncoding_het_snps ... ok Test _line2dict ... ok Test non_synon_variants ... ok Test _pc_id_and_read_depth_of_longest ... ok Test _to_cluster_summary_has_known_nonsynonymous ... ok Test _to_cluster_summary_has_nonsynonymous ... ok Test _to_cluster_summary_has_novel_nonsynonymous ... ok Test _to_cluster_summary_assembled ... ok test _filter_depths ... ok test _get_is_het_and_percent ... ok Test _has_nonsynonymous ... ok test __init__ ... ok Test _column_summary_data ... ok Test _load_file ... ok test _var_groups ... ok Test _variant_column_names_tuples_and_het_snps ... ok Test _add_phandango_colour_columns ... ok test_determine_cluster_cols (ariba.tests.summary_test.TestSummary) ... ok Test _distance_score_between_lists ... ok Test _distance_score_bewteen_values ... ok Test _filter_matrix_columns ... ok Test _filter_matrix_rows ... ok test gather_unfiltered_output_data ... ok Test init ... ok Test _load_fofn ... ok Test _load_input_files ... ok Test _matrix_to_csv ... ok Test _matrix_to_csv with remove_nas ... ok Test _newick_from_dist_matrix ... ok Test _to_matrix all columns ... ok Test _to_matrix with assembled column only ... ok Test _to_matrix with cluster columns only ... ok Test _to_matrix with groups ... ok Test _to_matrix with vars ... ok Test whole run to check csv ok (skip making tree) ... ok Test _write_distance_matrix ... ok test genbank_to_gene_coords ... ok test load_mutations ... ok test make_prepareref_dir ... ok test make_prepareref_files ... ok test report_to_resistance_dict ... ok test write_prepareref_fasta_file ... ok test write_prepareref_metadata_file ... ok test _cluster2seqs ... ok test _load_clusters ... ok test query with unknown query ... ok test _seq2cluster ... ok test _seqinfo ... ok Test get_all_versions ... WARNING: spades not found in path. Looked for spades.py ok test _fa_header_to_name_and_metadata ... ok test _fa_header_to_name_pieces ... ok test run ... ok ---------------------------------------------------------------------- Ran 356 tests in 120.834s OK (SKIP=2) create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /<>/ariba-2.14.6+ds/debian/ariba running install running build running build_py running build_ext running build_scripts running install_lib creating /<>/ariba-2.14.6+ds/debian/ariba/usr creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9 creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/vcfcall_ariba.cpython-39-powerpc64le-linux-gnu.so -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/fermilite_ariba.cpython-39-powerpc64le-linux-gnu.so -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/minimap_ariba.cpython-39-powerpc64le-linux-gnu.so -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/samtools_variants.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/faidx.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/mlst_profile.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/vfdb_parser.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/ref_seq_chooser.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/assembly_variants.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/read_filter.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/clusters.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/refdata_query.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/sequence_variant.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/bam_parse.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/reference_data.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/panel.20181115.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/panel.20181115.json -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/NC_000962.3.gb -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/panel.20181221.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/panel.20190102.json -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/panel.20181221.json -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/panel.20190102.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/mlst_reporter_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/samtools_variants_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/ref_preparer_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/flag_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/test_refdata_query.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/assembly_variants_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/read_store_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/common_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/summary_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/mapping_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/read_filter_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/card_record_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/mic_plotter_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/bam_parse_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/ref_seq_chooser_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/report_filter_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/assembly_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/summary_cluster_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/link_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/sequence_metadata_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/ncbi_getter_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__init__.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/cdhit_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_run.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_load_fofn -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/tb_genbank_to_gene_coords.gb -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/test_common_cat_files.out -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_clean.in -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/00.rename_info -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_load_input_files.1.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_load_report_good.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_fasta_file.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/dummy.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_load_annotations.csv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_init.fofn -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.3.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/test_common_cat_files.in.3 -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_sort_file.out -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/ref_genes_getter_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/clusters_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/summary_cluster_variant_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/histogram_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/external_progs_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/megares_data_finder_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/cluster_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/report_flag_expander_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/summary_sample_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/mlst_profile_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/sequence_variant_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/versions_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/vfdb_parser_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/mapping_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/versions_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/test_refdata_query.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/megares_data_finder_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/flag_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/external_progs_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/common_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/cluster_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/ncbi_getter_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/bam_parse_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/summary_cluster_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/pubmlst_ref_preparer_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/pubmlst_getter_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/tb_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/megares_zip_parser_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/sequence_metadata_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/report_filter_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/aln_to_metadata_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/vfdb_parser_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/cdhit_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/mlst_reporter_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/mlst_profile_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/reference_data_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/assembly_variants_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/ref_seq_chooser_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/summary_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/__init__.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/clusters_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/samtools_variants_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/link_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/card_record_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/ref_preparer_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/assembly_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/read_filter_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/mic_plotter_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/summary_cluster_variant_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/summary_sample_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/ref_genes_getter_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/scaffold_graph_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/assembly_compare_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/sequence_variant_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/read_store_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/report_flag_expander_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/histogram_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__pycache__/faidx_test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/reference_data_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/megares_zip_parser_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/faidx_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/pubmlst_getter_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/scaffold_graph_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/tb_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/aln_to_metadata_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/assembly_compare_test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/aln_to_metadata.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/mapping.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/assembly_compare.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/pubmlst_ref_preparer.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/sequence_metadata.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/mlst_reporter.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/mic_plotter.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/ref_preparer.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/card_record.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__init__.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/aln2meta.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/pubmlstget.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/expandflag.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/getref.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/refquery.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__init__.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/summary.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/test.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/prepareref_tb.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/run.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/micplot.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/flag.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/prepareref.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/reportfilter.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/run.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/summary.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/test.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/prepareref.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/flag.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/refquery.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/pubmlstspecies.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/aln2meta.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/__init__.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/version.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/expandflag.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/reportfilter.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/getref.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/prepareref_tb.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/pubmlstget.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__pycache__/micplot.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/version.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/pubmlstspecies.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/common.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/megares_data_finder.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/cdhit.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/histogram.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/report_flag_expander.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/ref_genes_getter.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/summary.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/assembly.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/megares_zip_parser.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/link.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/cluster.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/scaffold_graph.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/summary_cluster_variant.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/flag.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/test_run_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data/reads_1.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/test_run_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data/reads_2.fq -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/test_run_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/test_run_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data/metadata.tsv -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/test_run_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data/ref_seqs.fa -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/test_run_data copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/read_store.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba creating /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/summary.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/ref_seq_chooser.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/vfdb_parser.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/cdhit.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/pubmlst_getter.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/faidx.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/mapping.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/read_store.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/flag.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/report_flag_expander.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/samtools_variants.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/assembly.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/pubmlst_ref_preparer.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/card_record.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/refdata_query.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/summary_cluster.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/common.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/link.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/__init__.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/assembly_variants.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/megares_data_finder.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/external_progs.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/mic_plotter.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/summary_sample.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/report.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/versions.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/reference_data.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/mlst_profile.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/ref_preparer.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/histogram.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/cluster.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/bam_parse.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/ref_genes_getter.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/report_filter.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/megares_zip_parser.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/assembly_compare.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/tb.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/sequence_variant.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/mlst_reporter.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/scaffold_graph.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/summary_cluster_variant.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/sequence_metadata.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/aln_to_metadata.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/clusters.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__pycache__/read_filter.cpython-39.pyc -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__pycache__ copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/versions.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/report.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/report_filter.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/external_progs.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/summary_sample.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/summary_cluster.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /<>/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/pubmlst_getter.py -> /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb.py to tb.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/faidx.py to faidx.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/read_filter.py to read_filter.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/clusters.py to clusters.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/refdata_query.py to refdata_query.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/bam_parse.py to bam_parse.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/reference_data.py to reference_data.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/mlst_reporter_test.py to mlst_reporter_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/flag_test.py to flag_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/test_refdata_query.py to test_refdata_query.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/assembly_variants_test.py to assembly_variants_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/common_test.py to common_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/mapping_test.py to mapping_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/card_record_test.py to card_record_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/ref_seq_chooser_test.py to ref_seq_chooser_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/link_test.py to link_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/ncbi_getter_test.py to ncbi_getter_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/cdhit_test.py to cdhit_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/ref_genes_getter_test.py to ref_genes_getter_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/summary_cluster_variant_test.py to summary_cluster_variant_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/cluster_test.py to cluster_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/sequence_variant_test.py to sequence_variant_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/versions_test.py to versions_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/faidx_test.py to faidx_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/pubmlst_getter_test.py to pubmlst_getter_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/scaffold_graph_test.py to scaffold_graph_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/assembly_compare_test.py to assembly_compare_test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/mapping.py to mapping.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/sequence_metadata.py to sequence_metadata.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/mlst_reporter.py to mlst_reporter.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/card_record.py to card_record.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/aln2meta.py to aln2meta.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/pubmlstget.py to pubmlstget.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/getref.py to getref.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/refquery.py to refquery.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/summary.py to summary.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/test.py to test.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/prepareref_tb.py to prepareref_tb.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/run.py to run.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/micplot.py to micplot.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/flag.py to flag.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/version.py to version.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/pubmlstspecies.py to pubmlstspecies.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/common.py to common.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/megares_data_finder.py to megares_data_finder.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/cdhit.py to cdhit.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/histogram.py to histogram.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/summary.py to summary.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/assembly.py to assembly.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/link.py to link.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/cluster.py to cluster.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/flag.py to flag.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/read_store.py to read_store.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/versions.py to versions.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/report.py to report.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/report_filter.py to report_filter.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/external_progs.py to external_progs.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/summary_sample.py to summary_sample.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-39.pyc byte-compiling /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-39.pyc running install_egg_info running egg_info creating ariba.egg-info writing ariba.egg-info/PKG-INFO writing dependency_links to ariba.egg-info/dependency_links.txt writing requirements to ariba.egg-info/requires.txt writing top-level names to ariba.egg-info/top_level.txt writing manifest file 'ariba.egg-info/SOURCES.txt' reading manifest file 'ariba.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.h' under directory 'third_party' writing manifest file 'ariba.egg-info/SOURCES.txt' Copying ariba.egg-info to /<>/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba-2.14.6.egg-info Skipping SOURCES.txt running install_scripts creating /<>/ariba-2.14.6+ds/debian/ariba/usr/bin copying build/scripts-3.9/ariba -> /<>/ariba-2.14.6+ds/debian/ariba/usr/bin changing mode of /<>/ariba-2.14.6+ds/debian/ariba/usr/bin/ariba to 755 dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/<>/ariba-2.14.6+ds' mkdir -p /<>/ariba-2.14.6+ds/debian/man asciidoctor -a docdate='' -b manpage -o /<>/ariba-2.14.6+ds/debian/man/ariba.1 /<>/ariba-2.14.6+ds/debian/ariba.1.adoc dh_installman -- make[1]: Leaving directory '/<>/ariba-2.14.6+ds' dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -a -O--buildsystem=pybuild dh_strip -a -a -O--buildsystem=pybuild dh_makeshlibs -a -a -O--buildsystem=pybuild dh_shlibdeps -a -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ariba/usr/lib/python3/dist-packages/vcfcall_ariba.cpython-39-powerpc64le-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package ariba: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package ariba: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing ariba-dbgsym (in debian/.debhelper/ariba/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing ariba (in debian/ariba); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/ariba/dbgsym-root/DEBIAN/control, package ariba-dbgsym, directory debian/.debhelper/ariba/dbgsym-root dpkg-deb: building package 'ariba-dbgsym' in 'debian/.debhelper/scratch-space/build-ariba/ariba-dbgsym_2.14.6+ds-1build1_ppc64el.deb'. pkgstripfiles: processing control file: debian/ariba/DEBIAN/control, package ariba, directory debian/ariba pkgstripfiles: Truncating usr/share/doc/ariba/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package ariba ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ariba' in '../ariba_2.14.6+ds-1build1_ppc64el.deb'. Renaming ariba-dbgsym_2.14.6+ds-1build1_ppc64el.deb to ariba-dbgsym_2.14.6+ds-1build1_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../ariba_2.14.6+ds-1build1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-12-07T17:36:08Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ariba_2.14.6+ds-1build1_ppc64el.changes: ---------------------------------------- Format: 1.8 Date: Mon, 07 Dec 2020 18:25:36 +0100 Source: ariba Binary: ariba Architecture: ppc64el Version: 2.14.6+ds-1build1 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: ariba - Antibiotic Resistance Identification By Assembly Changes: ariba (2.14.6+ds-1build1) hirsute; urgency=medium . * No-change rebuild to drop python3.8 extensions. Checksums-Sha1: 46bf8b984b7dadb51ca76f7bf9db313685e06759 440500 ariba-dbgsym_2.14.6+ds-1build1_ppc64el.ddeb c79fd72b80b7def2935dae7d8895330b3c58150c 10435 ariba_2.14.6+ds-1build1_ppc64el.buildinfo c3a1069a90351feda5de9e0f7ec588602d7b013f 1947556 ariba_2.14.6+ds-1build1_ppc64el.deb Checksums-Sha256: fe58f42c4bdf29470038ef00b64297e573f11a437b537377615a69496d83ec80 440500 ariba-dbgsym_2.14.6+ds-1build1_ppc64el.ddeb ac9f1b8f419777adfa7d7214acb2bd1a00f0df6dab5c3aa94bdca924d919e423 10435 ariba_2.14.6+ds-1build1_ppc64el.buildinfo 06d50bedaef2d90bcb6a058bbd251d20b637f83c0007a63a88b404524067c5eb 1947556 ariba_2.14.6+ds-1build1_ppc64el.deb Files: b027636c0f715ddd9a96bdfa36a165fc 440500 debug optional ariba-dbgsym_2.14.6+ds-1build1_ppc64el.ddeb 759047e27db57c73d72becec0d9ca8a3 10435 science optional ariba_2.14.6+ds-1build1_ppc64el.buildinfo 367dd192a01df2fac84b0d2e802bd55a 1947556 science optional ariba_2.14.6+ds-1build1_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: ariba Binary: ariba ariba-dbgsym Architecture: ppc64el Version: 2.14.6+ds-1build1 Checksums-Md5: b027636c0f715ddd9a96bdfa36a165fc 440500 ariba-dbgsym_2.14.6+ds-1build1_ppc64el.ddeb 367dd192a01df2fac84b0d2e802bd55a 1947556 ariba_2.14.6+ds-1build1_ppc64el.deb Checksums-Sha1: 46bf8b984b7dadb51ca76f7bf9db313685e06759 440500 ariba-dbgsym_2.14.6+ds-1build1_ppc64el.ddeb c3a1069a90351feda5de9e0f7ec588602d7b013f 1947556 ariba_2.14.6+ds-1build1_ppc64el.deb Checksums-Sha256: fe58f42c4bdf29470038ef00b64297e573f11a437b537377615a69496d83ec80 440500 ariba-dbgsym_2.14.6+ds-1build1_ppc64el.ddeb 06d50bedaef2d90bcb6a058bbd251d20b637f83c0007a63a88b404524067c5eb 1947556 ariba_2.14.6+ds-1build1_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Mon, 07 Dec 2020 17:36:08 +0000 Build-Path: /<>/ariba-2.14.6+ds Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: asciidoctor (= 2.0.10-2), autoconf (= 2.69-11.1), automake (= 1:1.16.3-1ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1~rc3-1ubuntu1), binutils (= 2.35.50.20201207-0ubuntu1), binutils-common (= 2.35.50.20201207-0ubuntu1), binutils-powerpc64le-linux-gnu (= 2.35.50.20201207-0ubuntu1), blt (= 2.5.3+dfsg-4), bowtie2 (= 2.4.2-1), bsdextrautils (= 2.36.1-1ubuntu2), bsdutils (= 1:2.36.1-1ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), ca-certificates (= 20200601), cd-hit (= 4.8.1-3), coreutils (= 8.32-4ubuntu2), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.0-20ubuntu1), dash (= 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1), debconf (= 1.5.74), debhelper (= 13.3ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-python (= 4.20201102ubuntu1), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu3), dpkg-dev (= 1.20.5ubuntu3), dwz (= 0.13+20201015-2), fastaq (= 3.17.0-3), file (= 1:5.39-3), findutils (= 4.7.0-1ubuntu2), fontconfig-config (= 2.13.1-4.2ubuntu2), fonts-lyx (= 2.3.6-1), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.0-20ubuntu1), gawk (= 1:5.0.1+dfsg-1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.0-20ubuntu1), gcc-10-base (= 10.2.0-20ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), help2man (= 1.47.16), hostname (= 3.23), init-system-helpers (= 1.59), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-20ubuntu1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 10.2.0-20ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu2), libaudit1 (= 1:2.8.5-3ubuntu2), libbinutils (= 2.35.50.20201207-0ubuntu1), libblas3 (= 3.9.0-3ubuntu1), libblkid1 (= 2.36.1-1ubuntu2), libbrotli1 (= 1.0.9-2build1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu5), libc-dev-bin (= 2.32-0ubuntu5), libc6 (= 2.32-0ubuntu5), libc6-dev (= 2.32-0ubuntu5), libcap-ng0 (= 0.7.9-2.2build1), libcapnp-0.7.0 (= 0.7.0-7), libcc1-0 (= 10.2.0-20ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.35.50.20201207-0ubuntu1), libctf0 (= 2.35.50.20201207-0ubuntu1), libcurl3-gnutls (= 7.72.0-1ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.255ubuntu1), libdebhelper-perl (= 13.3ubuntu1), libdeflate0 (= 1.6-1), libdpkg-perl (= 1.20.5ubuntu3), libelf1 (= 0.182-1), libexpat1 (= 2.2.10-1), libexpat1-dev (= 2.2.10-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-stripnondeterminism-perl (= 1.9.0-1), libfml-dev (= 0.1-13), libfml0 (= 0.1-13), libfontconfig1 (= 2.13.1-4.2ubuntu2), libfreetype6 (= 2.10.2+dfsg-4), libgcc-10-dev (= 10.2.0-20ubuntu1), libgcc-s1 (= 10.2.0-20ubuntu1), libgcrypt20 (= 1.8.7-2ubuntu1), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgfortran5 (= 10.2.0-20ubuntu1), libglib2.0-0 (= 2.66.3-2), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgnutls30 (= 3.6.15-4ubuntu2), libgomp1 (= 10.2.0-20ubuntu1), libgpg-error0 (= 1.38-2), libgsl25 (= 2.6+dfsg-2), libgslcblas0 (= 2.6+dfsg-2), libgssapi-krb5-2 (= 1.17-10ubuntu1), libgssapi3-heimdal (= 7.7.0+dfsg-2), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.6-2), libhts3 (= 1.11-2), libhx509-5-heimdal (= 7.7.0+dfsg-2), libicu67 (= 67.1-4), libidn2-0 (= 2.3.0-4), libimagequant0 (= 2.12.2-1.1), libisl23 (= 0.23-1), libitm1 (= 10.2.0-20ubuntu1), libjbig0 (= 2.1-3.1build1), libjpeg-turbo8 (= 2.0.3-0ubuntu2), libjpeg8 (= 8c-2ubuntu8), libjs-jquery (= 3.5.1+dfsg+~3.5.4-3), libjs-jquery-ui (= 1.12.1+dfsg-7), libk5crypto3 (= 1.17-10ubuntu1), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.17-10ubuntu1), libkrb5support0 (= 1.17-10ubuntu1), liblapack3 (= 3.9.0-3ubuntu1), liblcms2-2 (= 2.9-4), libldap-2.4-2 (= 2.4.53+dfsg-1ubuntu5), liblocale-gettext-perl (= 1.07-4build1), liblsan0 (= 10.2.0-20ubuntu1), liblz4-1 (= 1.9.3-0ubuntu1), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libminimap-dev (= 0.2-5), libminimap0 (= 0.2-5), libmount1 (= 2.36.1-1ubuntu2), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libmurmurhash2 (= 1.5-2), libncurses6 (= 6.2+20201114-1), libncursesw6 (= 6.2+20201114-1), libnettle8 (= 3.6-2), libnghttp2-14 (= 1.42.0-1), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libp11-kit0 (= 0.23.21-2build1), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre2-8-0 (= 10.35-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-5), libpipeline1 (= 1.5.3-1), libpng16-16 (= 1.6.37-3), libpsl5 (= 0.21.0-1.1ubuntu1), libpython3-all-dev (= 3.9.0-3ubuntu1), libpython3-dev (= 3.9.0-3ubuntu1), libpython3-stdlib (= 3.9.0-3ubuntu1), libpython3.8-minimal (= 3.8.6-1), libpython3.8-stdlib (= 3.8.6-1), libpython3.9 (= 3.9.1~rc1-2), libpython3.9-dev (= 3.9.1~rc1-2), libpython3.9-minimal (= 3.9.1~rc1-2), libpython3.9-stdlib (= 3.9.1~rc1-2), libquadmath0 (= 10.2.0-20ubuntu1), libreadline8 (= 8.1~rc3-1), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libruby2.7 (= 2.7.2-3), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libseccomp2 (= 2.4.3-1ubuntu5), libselinux1 (= 3.1-2build1), libsigsegv2 (= 2.12-2build1), libsmartcols1 (= 2.36.1-1ubuntu2), libsqlite3-0 (= 3.34.0-1), libssh-4 (= 0.9.5-1), libssl1.1 (= 1.1.1f-1ubuntu4), libstdc++-10-dev (= 10.2.0-20ubuntu1), libstdc++6 (= 10.2.0-20ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-5ubuntu1), libtasn1-6 (= 4.16.0-2), libtcl8.6 (= 8.6.10+dfsg-1), libtiff5 (= 4.1.0+git191117-2build1), libtinfo6 (= 6.2+20201114-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtk8.6 (= 8.6.10-1), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-20ubuntu1), libubsan1 (= 10.2.0-20ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-5ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-1ubuntu2), libwebp6 (= 0.6.1-2), libwebpdemux2 (= 0.6.1-2), libwebpmux3 (= 0.6.1-2), libwind0-heimdal (= 7.7.0+dfsg-2), libx11-6 (= 2:1.6.12-1), libx11-data (= 2:1.6.12-1), libxau6 (= 1:1.0.9-0ubuntu1), libxcb1 (= 1.14-2), libxdmcp6 (= 1:1.1.3-0ubuntu1), libxext6 (= 2:1.3.4-0ubuntu1), libxft2 (= 2.3.3-0ubuntu1), libxml2 (= 2.9.10+dfsg-6.3), libxrender1 (= 1:0.9.10-1), libxss1 (= 1:1.2.3-1), libyaml-0-2 (= 0.2.2-1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-32.34+21.04.1), login (= 1:4.8.1-1ubuntu7), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), mailcap (= 3.67ubuntu1), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mash (= 2.2.2+dfsg-1build2), mawk (= 1.3.4.20200120-2), media-types (= 1.0.1ubuntu1), mime-support (= 3.66), mummer (= 3.23+dfsg-6), ncurses-base (= 6.2+20201114-1), ncurses-bin (= 6.2+20201114-1), node-jquery (= 3.5.1+dfsg+~3.5.4-3), openssl (= 1.1.1f-1ubuntu4), patch (= 2.7.6-6), perl (= 5.32.0-5), perl-base (= 5.32.0-5), perl-modules-5.32 (= 5.32.0-5), po-debconf (= 1.0.21), python-matplotlib-data (= 3.3.2-2), python3 (= 3.9.0-3ubuntu1), python3-all (= 3.9.0-3ubuntu1), python3-all-dev (= 3.9.0-3ubuntu1), python3-biopython (= 1.78+dfsg-4), python3-bs4 (= 4.9.3-1), python3-certifi (= 2020.6.20-1), python3-cycler (= 0.10.0-3), python3-dateutil (= 2.8.1-4), python3-dendropy (= 4.5.1-1), python3-dev (= 3.9.0-3ubuntu1), python3-distutils (= 3.9.0-1), python3-kiwisolver (= 1.3.1-1), python3-lib2to3 (= 3.9.0-1), python3-matplotlib (= 3.3.2-2), python3-minimal (= 3.9.0-3ubuntu1), python3-nose (= 1.3.7-7), python3-numpy (= 1:1.19.4-1ubuntu1), python3-pil (= 8.0.1-1), python3-pkg-resources (= 50.3.0-1), python3-pymummer (= 0.11.0-2), python3-pyparsing (= 2.4.7-1), python3-pysam (= 0.15.4+ds-3build1), python3-reportlab (= 3.5.55-1), python3-reportlab-accel (= 3.5.55-1), python3-setuptools (= 50.3.0-1), python3-six (= 1.15.0-2), python3-soupsieve (= 2.0.1-1), python3-tk (= 3.9.0-1), python3.8 (= 3.8.6-1), python3.8-minimal (= 3.8.6-1), python3.9 (= 3.9.1~rc1-2), python3.9-dev (= 3.9.1~rc1-2), python3.9-minimal (= 3.9.1~rc1-2), rake (= 13.0.1-4), readline-common (= 8.1~rc3-1), rpcsvc-proto (= 1.4.2-0ubuntu4), ruby (= 1:2.7+2), ruby-asciidoctor (= 2.0.10-2), ruby-minitest (= 5.13.0-1), ruby-net-telnet (= 0.1.1-2), ruby-power-assert (= 1.1.7-1), ruby-rubygems (= 3.2.0~rc.2-4), ruby-test-unit (= 3.3.5-1), ruby-xmlrpc (= 0.3.0-2), ruby2.7 (= 2.7.2-3), rubygems-integration (= 1.17.3), samtools (= 1.11-1), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.32+dfsg-1), tk8.6-blt2.5 (= 2.5.3+dfsg-4), ttf-bitstream-vera (= 1.10-8), tzdata (= 2020d-1ubuntu1), ucf (= 3.0043), util-linux (= 2.36.1-1ubuntu2), x11-common (= 1:7.7+19ubuntu15), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607361936" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ ariba_2.14.6+ds-1build1_ppc64el.deb ----------------------------------- new Debian package, version 2.0. size 1947556 bytes: control archive=17892 bytes. 1152 bytes, 18 lines control 91149 bytes, 756 lines md5sums 235 bytes, 12 lines * postinst #!/bin/sh 384 bytes, 12 lines * prerm #!/bin/sh Package: ariba Version: 2.14.6+ds-1build1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 20523 Depends: fastaq (>= 3.12.0), python3 (<< 3.10), python3 (>= 3.9~), python3-biopython, python3-bs4, python3-dendropy, python3-matplotlib, python3-pymummer (>= 0.10.2), python3-pysam (>= 0.9.1), python3:any, libc6 (>= 2.17), libfml0 (>= 0.1-4~), libgcc-s1 (>= 3.0), libminimap0 (>= 0.2), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4), bowtie2 (>= 2.1.0), cd-hit, mash, mummer, python3-tk Suggests: spades Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/ariba Description: Antibiotic Resistance Identification By Assembly ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes. drwxr-xr-x root/root 0 2020-12-07 17:25 ./ drwxr-xr-x root/root 0 2020-12-07 17:25 ./usr/ drwxr-xr-x root/root 0 2020-12-07 17:25 ./usr/bin/ -rwxr-xr-x root/root 26193 2020-12-07 17:25 ./usr/bin/ariba drwxr-xr-x root/root 0 2020-12-07 17:25 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-07 17:25 ./usr/lib/python3/ drwxr-xr-x root/root 0 2020-12-07 17:25 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2020-12-07 17:25 ./usr/lib/python3/dist-packages/ariba-2.14.6.egg-info/ -rw-r--r-- root/root 519 2020-12-07 17:25 ./usr/lib/python3/dist-packages/ariba-2.14.6.egg-info/PKG-INFO -rw-r--r-- root/root 1 2020-12-07 17:25 ./usr/lib/python3/dist-packages/ariba-2.14.6.egg-info/dependency_links.txt -rw-r--r-- root/root 0 2020-12-07 17:25 ./usr/lib/python3/dist-packages/ariba-2.14.6.egg-info/requires.txt 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Build-Space: n/a Build-Time: 148 Distribution: hirsute-proposed Host Architecture: ppc64el Install-Time: 45 Job: ariba_2.14.6+ds-1build1.dsc Machine Architecture: ppc64el Package: ariba Package-Time: 195 Source-Version: 2.14.6+ds-1build1 Space: n/a Status: successful Version: 2.14.6+ds-1build1 -------------------------------------------------------------------------------- Finished at 2020-12-07T17:36:08Z Build needed 00:03:15, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20375605 Scanning for processes to kill in build PACKAGEBUILD-20375605