RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-37 3.13.0-95-generic #142-Ubuntu SMP Fri Aug 12 17:00:09 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.5 git-build-recipe_0.3~git201603101733.90b6821~ubuntu14.04.2 git_1:1.9.1-1ubuntu0.3 dpkg-dev_1.17.5ubuntu5.7 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1 qemu-user-static_2.0.0+dfsg-2ubuntu1.27. Syncing the system clock with the buildd NTP service... 31 Aug 19:41:24 ntpdate[1711]: adjust time server 10.211.37.1 offset 0.051219 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-10636804', '/home/buildd/filecache-default/063eeb43ee0a3186cd7a3c6a3a452f2f4c9a8d95'] Unpacking chroot for build PACKAGEBUILD-10636804 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-10636804'] Mounting chroot for build PACKAGEBUILD-10636804 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-10636804', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-10636804 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-10636804', 'amd64'] Updating debian chroot for build PACKAGEBUILD-10636804 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 Packages [1188 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [569 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe amd64 Packages [7794 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4503 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main amd64 Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe amd64 Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main amd64 Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe amd64 Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 Packages [79.7 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [32.3 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe amd64 Packages [250 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [105 kB] Fetched 15.0 MB in 7s (2098 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-5 libprocps4 libstdc++-5-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-6 g++-6 gcc-6 libasan3 libcap-ng0 libgcc-6-dev libip4tc0 libmpx2 libpng16-16 libprocps6 libstdc++-6-dev The following packages will be upgraded: apt apt-transport-https base-files base-passwd bash binutils bsdutils bzip2 cpp cpp-5 dash debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fakeroot findutils g++ g++-5 gcc gcc-5 gcc-5-base gcc-6-base gnupg gpgv grep hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan2 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcilkrts5 libcomerr2 libcryptsetup4 libcurl3-gnutls libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgdbm3 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn11 libisl15 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 liblsan0 liblzma5 libmount1 libmpfr4 libmpx0 libncurses5 libncursesw5 libp11-kit0 libpcre3 libperl5.22 libquadmath0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base make mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.22 pkgbinarymangler policyrcd-script-zg2 procps sed systemd systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 145 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 170 MB of archives. After this operation, 492 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main amd64 base-files amd64 9.6ubuntu4 [56.1 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main amd64 debianutils amd64 4.8 [85.7 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main amd64 bash amd64 4.3-15ubuntu1 [593 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main amd64 bsdutils amd64 1:2.28.1-1ubuntu1 [54.2 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 tar amd64 1.29b-1 [230 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main amd64 dpkg amd64 1.18.10ubuntu1 [2139 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main amd64 dash amd64 0.5.8-2.3ubuntu1 [104 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main amd64 libc6-dev amd64 2.24-0ubuntu1 [2273 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main amd64 libc-dev-bin amd64 2.24-0ubuntu1 [68.6 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main amd64 linux-libc-dev amd64 4.4.0-9136.55 [828 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main amd64 libc6 amd64 2.24-0ubuntu1 [2592 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main amd64 libc-bin amd64 2.24-0ubuntu1 [645 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 gcc-6-base amd64 6.2.0-2ubuntu11 [16.6 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgcc1 amd64 1:6.2.0-2ubuntu11 [38.1 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main amd64 e2fslibs amd64 1.43.1-1 [152 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main amd64 e2fsprogs amd64 1.43.1-1 [484 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main amd64 findutils amd64 4.6.0+git+20160703-2 [281 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main amd64 grep amd64 2.25-6 [152 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main amd64 hostname amd64 3.18 [11.0 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main amd64 login amd64 1:4.2-3.1ubuntu6 [305 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsmartcols1 amd64 2.28.1-1ubuntu1 [64.4 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main amd64 libaudit-common all 1:2.6.5-1ubuntu1 [4660 B] Get:23 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcap-ng0 amd64 0.7.7-3 [10.9 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main amd64 libaudit1 amd64 1:2.6.5-1ubuntu1 [37.3 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpcre3 amd64 2:8.39-1 [228 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main amd64 libselinux1 amd64 2.5-3 [65.3 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsepol1 amd64 2.5-1 [216 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsemanage-common all 2.5-1 [6800 B] Get:29 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsemanage1 amd64 2.5-1 [80.3 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main amd64 bzip2 amd64 1.0.6-8build1 [33.5 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main amd64 libbz2-1.0 amd64 1.0.6-8build1 [30.6 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main amd64 passwd amd64 1:4.2-3.1ubuntu6 [781 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main amd64 libuuid1 amd64 2.28.1-1ubuntu1 [14.6 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main amd64 libblkid1 amd64 2.28.1-1ubuntu1 [106 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfdisk1 amd64 2.28.1-1ubuntu1 [138 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl-modules-5.22 all 5.22.2-3 [2631 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main amd64 libperl5.22 amd64 5.22.2-3 [3397 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl amd64 5.22.2-3 [238 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl-base amd64 5.22.2-3 [1299 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdb5.3 amd64 5.3.28-12 [669 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgdbm3 amd64 1.8.3-14 [16.8 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main amd64 zlib1g amd64 1:1.2.8.dfsg-2ubuntu5 [51.1 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main amd64 init-system-helpers all 1.42 [37.5 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety/main amd64 util-linux amd64 2.28.1-1ubuntu1 [890 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main amd64 sysvinit-utils amd64 2.88dsf-59.8git1 [18.3 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main amd64 mount amd64 2.28.1-1ubuntu1 [123 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety/main amd64 ncurses-bin amd64 6.0+20160625-1ubuntu1 [136 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main amd64 sed amd64 4.2.2-7.1 [140 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety/main amd64 init amd64 1.42 [5158 B] Get:50 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdebconfclient0 amd64 0.213ubuntu1 [6048 B] Get:51 http://ftpmaster.internal/ubuntu yakkety/main amd64 base-passwd amd64 3.5.40 [48.4 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main amd64 ncurses-base all 6.0+20160625-1ubuntu1 [16.6 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblzma5 amd64 5.1.1alpha+20120614-2.1ubuntu1 [81.0 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libstdc++6 amd64 6.2.0-2ubuntu11 [401 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main amd64 libapt-pkg5.0 amd64 1.3~rc2ubuntu3 [761 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main amd64 gpgv amd64 1.4.20-6ubuntu1 [169 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main amd64 libusb-0.1-4 amd64 2:0.1.12-30 [17.2 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main amd64 gnupg amd64 1.4.20-6ubuntu1 [641 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety/main amd64 ubuntu-keyring all 2016.05.13 [16.5 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main amd64 apt amd64 1.3~rc2ubuntu3 [1043 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main amd64 debconf all 1.5.59ubuntu1 [136 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgpg-error0 amd64 1.24-1 [34.0 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcrypt20 amd64 1.7.2-2ubuntu1 [398 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety/main amd64 libip4tc0 amd64 1.6.0-3ubuntu2 [20.0 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main amd64 libapparmor1 amd64 2.10.95-4ubuntu4 [32.5 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcap2 amd64 1:2.25-1 [13.3 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main amd64 libudev1 amd64 231-5 [58.2 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdevmapper1.02.1 amd64 2:1.02.130-1ubuntu1 [161 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcryptsetup4 amd64 2:1.7.2-0ubuntu1 [76.0 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety/main amd64 libidn11 amd64 1.33-1 [45.0 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety/main amd64 libkmod2 amd64 22-1.1ubuntu1 [39.9 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmount1 amd64 2.28.1-1ubuntu1 [116 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main amd64 libseccomp2 amd64 2.3.1-2ubuntu2 [36.8 kB] Get:74 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcap2-bin amd64 1:2.25-1 [20.1 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsystemd0 amd64 231-5 [211 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main amd64 systemd amd64 231-5 [2273 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main amd64 systemd-sysv amd64 231-5 [15.2 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcomerr2 amd64 1.43.1-1 [9840 B] Get:79 http://ftpmaster.internal/ubuntu yakkety/main amd64 libncurses5 amd64 6.0+20160625-1ubuntu1 [93.0 kB] Get:80 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtinfo5 amd64 6.0+20160625-1ubuntu1 [77.0 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/main amd64 libncursesw5 amd64 6.0+20160625-1ubuntu1 [114 kB] Get:82 http://ftpmaster.internal/ubuntu yakkety/main amd64 libss2 amd64 1.43.1-1 [10.8 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety/main amd64 lsb-base all 9.20160110ubuntu5 [13.2 kB] Get:84 http://ftpmaster.internal/ubuntu yakkety/main amd64 multiarch-support amd64 2.24-0ubuntu1 [6820 B] Get:85 http://ftpmaster.internal/ubuntu yakkety/main amd64 libprocps6 amd64 2:3.3.12-1ubuntu2 [31.2 kB] Get:86 http://ftpmaster.internal/ubuntu yakkety/main amd64 procps amd64 2:3.3.12-1ubuntu2 [224 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/main amd64 tzdata all 2016f-1 [169 kB] Get:88 http://ftpmaster.internal/ubuntu yakkety/main amd64 dmsetup amd64 2:1.02.130-1ubuntu1 [75.3 kB] Get:89 http://ftpmaster.internal/ubuntu yakkety/main amd64 libslang2 amd64 2.3.0-2.3ubuntu1 [414 kB] Get:90 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsqlite3-0 amd64 3.14.1-1 [477 kB] Get:91 http://ftpmaster.internal/ubuntu yakkety/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu8 [1080 kB] Get:92 http://ftpmaster.internal/ubuntu yakkety/main amd64 xz-utils amd64 5.1.1alpha+20120614-2.1ubuntu1 [79.6 kB] Get:93 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgmp10 amd64 2:6.1.1+dfsg-1 [240 kB] Get:94 http://ftpmaster.internal/ubuntu yakkety/main amd64 libp11-kit0 amd64 0.23.2-5 [106 kB] Get:95 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtasn1-6 amd64 4.9-4 [35.4 kB] Get:96 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgnutls30 amd64 3.5.3-3ubuntu1 [616 kB] Get:97 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgssapi-krb5-2 amd64 1.14.3+dfsg-1ubuntu1 [121 kB] Get:98 http://ftpmaster.internal/ubuntu yakkety/main amd64 libkrb5-3 amd64 1.14.3+dfsg-1ubuntu1 [275 kB] Get:99 http://ftpmaster.internal/ubuntu yakkety/main amd64 libkrb5support0 amd64 1.14.3+dfsg-1ubuntu1 [31.7 kB] Get:100 http://ftpmaster.internal/ubuntu yakkety/main amd64 libk5crypto3 amd64 1.14.3+dfsg-1ubuntu1 [80.7 kB] Get:101 http://ftpmaster.internal/ubuntu yakkety/main amd64 libkeyutils1 amd64 1.5.9-9ubuntu1 [9512 B] Get:102 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libroken18-heimdal amd64 1.7~git20160703+dfsg-1 [41.0 kB] Get:103 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libasn1-8-heimdal amd64 1.7~git20160703+dfsg-1 [174 kB] Get:104 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libheimbase1-heimdal amd64 1.7~git20160703+dfsg-1 [29.2 kB] Get:105 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libhcrypto4-heimdal amd64 1.7~git20160703+dfsg-1 [88.0 kB] Get:106 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libwind0-heimdal amd64 1.7~git20160703+dfsg-1 [47.9 kB] Get:107 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libhx509-5-heimdal amd64 1.7~git20160703+dfsg-1 [107 kB] Get:108 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libkrb5-26-heimdal amd64 1.7~git20160703+dfsg-1 [202 kB] Get:109 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libheimntlm0-heimdal amd64 1.7~git20160703+dfsg-1 [15.1 kB] Get:110 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgssapi3-heimdal amd64 1.7~git20160703+dfsg-1 [96.7 kB] Get:111 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-15 [14.5 kB] Get:112 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-15 [48.7 kB] Get:113 http://ftpmaster.internal/ubuntu yakkety/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu4 [161 kB] Get:114 http://ftpmaster.internal/ubuntu yakkety/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1 [54.2 kB] Get:115 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcurl3-gnutls amd64 7.50.1-1ubuntu1 [186 kB] Get:116 http://ftpmaster.internal/ubuntu yakkety/main amd64 apt-transport-https amd64 1.3~rc2ubuntu3 [34.0 kB] Get:117 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpng16-16 amd64 1.6.24-2 [175 kB] Get:118 http://ftpmaster.internal/ubuntu yakkety/main amd64 openssl amd64 1.0.2g-1ubuntu8 [492 kB] Get:119 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 binutils amd64 2.27-8ubuntu1 [2418 kB] Get:120 http://ftpmaster.internal/ubuntu yakkety/main amd64 libisl15 amd64 0.17.1-1 [540 kB] Get:121 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmpfr4 amd64 3.1.4-2 [190 kB] Get:122 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 cpp-6 amd64 6.2.0-2ubuntu11 [31.5 MB] Get:123 http://ftpmaster.internal/ubuntu yakkety/main amd64 cpp amd64 4:6.1.1-1ubuntu2 [27.4 kB] Get:124 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libquadmath0 amd64 6.2.0-2ubuntu11 [132 kB] Get:125 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgomp1 amd64 6.2.0-2ubuntu11 [73.9 kB] Get:126 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libitm1 amd64 6.2.0-2ubuntu11 [27.8 kB] Get:127 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libatomic1 amd64 6.2.0-2ubuntu11 [9130 B] Get:128 http://ftpmaster.internal/ubuntu yakkety/main amd64 libasan2 amd64 5.4.1-1ubuntu2 [264 kB] Get:129 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 liblsan0 amd64 6.2.0-2ubuntu11 [117 kB] Get:130 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libtsan0 amd64 6.2.0-2ubuntu11 [260 kB] Get:131 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libubsan0 amd64 6.2.0-2ubuntu11 [108 kB] Get:132 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libcilkrts5 amd64 6.2.0-2ubuntu11 [40.9 kB] Get:133 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmpx0 amd64 5.4.1-1ubuntu2 [9736 B] Get:134 http://ftpmaster.internal/ubuntu yakkety/main amd64 g++-5 amd64 5.4.1-1ubuntu2 [8443 kB] Get:135 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-5 amd64 5.4.1-1ubuntu2 [8565 kB] Get:136 http://ftpmaster.internal/ubuntu yakkety/main amd64 libstdc++-5-dev amd64 5.4.1-1ubuntu2 [1426 kB] Get:137 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcc-5-dev amd64 5.4.1-1ubuntu2 [2230 kB] Get:138 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libcc1-0 amd64 6.2.0-2ubuntu11 [31.1 kB] Get:139 http://ftpmaster.internal/ubuntu yakkety/main amd64 cpp-5 amd64 5.4.1-1ubuntu2 [7791 kB] Get:140 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-5-base amd64 5.4.1-1ubuntu2 [17.2 kB] Get:141 http://ftpmaster.internal/ubuntu yakkety/main amd64 dpkg-dev all 1.18.10ubuntu1 [651 kB] Get:142 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdpkg-perl all 1.18.10ubuntu1 [204 kB] Get:143 http://ftpmaster.internal/ubuntu yakkety/main amd64 make amd64 4.1-9 [154 kB] Get:144 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfakeroot amd64 1.21-1ubuntu2 [25.9 kB] Get:145 http://ftpmaster.internal/ubuntu yakkety/main amd64 fakeroot amd64 1.21-1ubuntu2 [62.2 kB] Get:146 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libasan3 amd64 6.2.0-2ubuntu11 [308 kB] Get:147 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libmpx2 amd64 6.2.0-2ubuntu11 [11.4 kB] Get:148 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgcc-6-dev amd64 6.2.0-2ubuntu11 [2308 kB] Get:149 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 gcc-6 amd64 6.2.0-2ubuntu11 [31.1 MB] Get:150 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc amd64 4:6.1.1-1ubuntu2 [5170 B] Get:151 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libstdc++-6-dev amd64 6.2.0-2ubuntu11 [1414 kB] Get:152 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 g++-6 amd64 6.2.0-2ubuntu11 [33.7 MB] Get:153 http://ftpmaster.internal/ubuntu yakkety/main amd64 g++ amd64 4:6.1.1-1ubuntu2 [1478 B] Get:154 http://ftpmaster.internal/ubuntu yakkety/main amd64 optipng amd64 0.7.6-1build1 [81.9 kB] Get:155 http://ftpmaster.internal/ubuntu yakkety/main amd64 pkgbinarymangler all 130 [43.2 kB] Get:156 http://ftpmaster.internal/ubuntu yakkety/main amd64 policyrcd-script-zg2 all 0.1-3 [5610 B] 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.2-3.1ubuntu6_amd64.deb ... Unpacking passwd (1:4.2-3.1ubuntu6) over (1:4.2-3.1ubuntu5) ... Setting up passwd (1:4.2-3.1ubuntu6) ... (Reading database ... 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Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12168 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-14_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-14) over (1.8.3-13.1) ... Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2ubuntu5_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-2ubuntu5) over (1:1.2.8.dfsg-2ubuntu4) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-2ubuntu5) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12168 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.42_all.deb ... Unpacking init-system-helpers (1.42) over (1.29ubuntu1) ... Setting up init-system-helpers (1.42) ... (Reading database ... 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Removing obsolete conffile /etc/init/hwclock-save.conf ... Removing obsolete conffile /etc/init/hwclock.conf ... Removing obsolete conffile /etc/init/hwclock.sh.conf ... Processing triggers for systemd (229-4ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12173 files and directories currently installed.) Preparing to unpack .../mount_2.28.1-1ubuntu1_amd64.deb ... Unpacking mount (2.28.1-1ubuntu1) over (2.27.1-6ubuntu3) ... Setting up mount (2.28.1-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12176 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.0+20160625-1ubuntu1_amd64.deb ... Unpacking ncurses-bin (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Setting up ncurses-bin (6.0+20160625-1ubuntu1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../liblzma5_5.1.1alpha+20120614-2.1ubuntu1_amd64.deb ... Unpacking liblzma5:amd64 (5.1.1alpha+20120614-2.1ubuntu1) over (5.1.1alpha+20120614-2ubuntu2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up liblzma5:amd64 (5.1.1alpha+20120614-2.1ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libstdc++6_6.2.0-2ubuntu11_amd64.deb ... Unpacking libstdc++6:amd64 (6.2.0-2ubuntu11) over (5.3.1-14ubuntu2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libstdc++6:amd64 (6.2.0-2ubuntu11) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.3~rc2ubuntu3_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.3~rc2ubuntu3) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libapt-pkg5.0:amd64 (1.3~rc2ubuntu3) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../gpgv_1.4.20-6ubuntu1_amd64.deb ... Unpacking gpgv (1.4.20-6ubuntu1) over (1.4.20-1ubuntu3) ... Setting up gpgv (1.4.20-6ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-30_amd64.deb ... Unpacking libusb-0.1-4:amd64 (2:0.1.12-30) over (2:0.1.12-28) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libusb-0.1-4:amd64 (2:0.1.12-30) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../gnupg_1.4.20-6ubuntu1_amd64.deb ... Unpacking gnupg (1.4.20-6ubuntu1) over (1.4.20-1ubuntu3) ... Setting up gnupg (1.4.20-6ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2016.05.13_all.deb ... Unpacking ubuntu-keyring (2016.05.13) over (2012.05.19) ... Setting up ubuntu-keyring (2016.05.13) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../apt_1.3~rc2ubuntu3_amd64.deb ... Unpacking apt (1.3~rc2ubuntu3) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up apt (1.3~rc2ubuntu3) ... Installing new version of config file /etc/cron.daily/apt-compat ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12173 files and directories currently installed.) Preparing to unpack .../debconf_1.5.59ubuntu1_all.deb ... Unpacking debconf (1.5.59ubuntu1) over (1.5.58ubuntu1) ... Setting up debconf (1.5.59ubuntu1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12173 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.2-2ubuntu1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.7.2-2ubuntu1) over (1.6.5-2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libgcrypt20:amd64 (1.7.2-2ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Selecting previously unselected package libip4tc0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12173 files and directories currently installed.) Preparing to unpack .../libip4tc0_1.6.0-3ubuntu2_amd64.deb ... Unpacking libip4tc0:amd64 (1.6.0-3ubuntu2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libip4tc0:amd64 (1.6.0-3ubuntu2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-10636804', 'amd64', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=yakkety-proposed', '--purge=never', '--nolog', '-A', 'ariba_2.2.1+ds-1.dsc'] Initiating build PACKAGEBUILD-10636804 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-95-generic #142-Ubuntu SMP Fri Aug 12 17:00:09 UTC 2016 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-37.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ ariba 2.2.1+ds-1 (amd64) 31 Aug 2016 19:43 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: ariba Version: 2.2.1+ds-1 Source Version: 2.2.1+ds-1 Distribution: yakkety-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/ariba-pPiNkR/ariba-2.2.1+ds' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/ariba-pPiNkR' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-10636804/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── ariba_2.2.1+ds-1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-xkwf_Q/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-xkwf_Q/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-xkwf_Q/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-xkwf_Q/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-xkwf_Q/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-xkwf_Q/apt_archive ./ Packages [525 B] Fetched 2852 B in 0s (160 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-xkwf_Q/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-5 libprocps4 libstdc++-5-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 774 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-xkwf_Q/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [774 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 774 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13260 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), python3, python3-dev, python3-dendropy (>= 4.1.0), python3-setuptools, python3-pymummer (>= 0.6.1), python3-pysam (>= 0.8.1), python3-nose (>= 1.3), bowtie2 (>= 2.1.0), cd-hit, samtools (>= 1.2), bcftools, mash, libminimap-dev, libfml-dev, mummer, fastaq (>= 3.12.0), help2man, asciidoctor Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), python3, python3-dev, python3-dendropy (>= 4.1.0), python3-setuptools, python3-pymummer (>= 0.6.1), python3-pysam (>= 0.8.1), python3-nose (>= 1.3), bowtie2 (>= 2.1.0), cd-hit, samtools (>= 1.2), bcftools, mash, libminimap-dev, libfml-dev, mummer, fastaq (>= 3.12.0), help2man, asciidoctor dpkg-deb: building package 'sbuild-build-depends-ariba-dummy' in '/«BUILDDIR»/resolver-nMz4e_/apt_archive/sbuild-build-depends-ariba-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-nMz4e_/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-nMz4e_/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-nMz4e_/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-nMz4e_/apt_archive ./ Sources [544 B] Get:5 copy:/«BUILDDIR»/resolver-nMz4e_/apt_archive ./ Packages [811 B] Fetched 3474 B in 0s (189 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-nMz4e_/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install ariba build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-5 libprocps4 libstdc++-5-dev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bcftools bowtie2 bsdmainutils cd-hit debhelper dh-autoreconf dh-python dh-strip-nondeterminism fastaq file gawk gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libcapnp-0.5.3 libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfml-dev libfml0 libglib2.0-0 libgsl2 libhts1 libicu57 liblocale-gettext-perl libmagic1 libminimap-dev libminimap0 libmpdec2 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libruby2.3 libsigsegv2 libtbb2 libtimedate-perl libtool libunistring0 libxml2 libyaml-0-2 m4 man-db mash mime-support mummer po-debconf python python-minimal python2.7 python2.7-minimal python3 python3-dendropy python3-dev python3-minimal python3-nose python3-pkg-resources python3-pymummer python3-pysam python3-setuptools python3.5 python3.5-dev python3.5-minimal rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration samtools zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc python-numpy python-matplotlib texlive-latex-recommended bowtie2-examples wamerican | wordlist whois vacation dh-make gawk-doc gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl python-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk python3-venv python-nose-doc python-setuptools-doc python3.5-venv python3.5-doc ri ruby-dev bundler Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bcftools bowtie2 bsdmainutils cd-hit debhelper dh-autoreconf dh-python dh-strip-nondeterminism fastaq file gawk gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libcapnp-0.5.3 libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfml-dev libfml0 libglib2.0-0 libgsl2 libhts1 libicu57 liblocale-gettext-perl libmagic1 libminimap-dev libminimap0 libmpdec2 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libruby2.3 libsigsegv2 libtbb2 libtimedate-perl libtool libunistring0 libxml2 libyaml-0-2 m4 man-db mash mime-support mummer po-debconf python python-minimal python2.7 python2.7-minimal python3 python3-dendropy python3-dev python3-minimal python3-nose python3-pkg-resources python3-pymummer python3-pysam python3-setuptools python3.5 python3.5-dev python3.5-minimal rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration samtools sbuild-build-depends-ariba-dummy zlib1g-dev 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 82.8 MB of archives. After this operation, 275 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-ariba-dummy Authentication warning overridden. 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Setting up libcroco3:amd64 (0.6.11-1) ... Setting up ruby-did-you-mean (1.0.0-2) ... Setting up libyaml-0-2:amd64 (0.1.6-3) ... Setting up libminimap0 (0.2-3) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libfml0 (0.1-2) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up liblocale-gettext-perl (1.07-3) ... Setting up rubygems-integration (1.10) ... Setting up libexpat1-dev:amd64 (2.2.0-1) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up samtools (1.3.1-2) ... Setting up ruby-minitest (5.9.0-1) ... Setting up bcftools (1.3.1-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.12-2) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu5) ... Setting up libfile-stripnondeterminism-perl (0.023-2) ... Setting up mash (1.1-3) ... Setting up ruby-test-unit (3.1.7-2) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up mummer (3.23+dfsg-1) ... Setting up libpython3.5-stdlib:amd64 (3.5.2-3ubuntu2) ... Setting up python2.7 (2.7.12-2) ... Setting up libminimap-dev (0.2-3) ... Setting up libfml-dev (0.1-2) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.28-2ubuntu1) ... Setting up libpython-stdlib:amd64 (2.7.11-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.4) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python (2.7.11-2) ... Setting up libtool (2.4.6-1) ... Setting up python3.5 (3.5.2-3ubuntu2) ... Setting up libpython3-stdlib:amd64 (3.5.1-4) ... Setting up po-debconf (1.0.19) ... Setting up libpython3.5:amd64 (3.5.2-3ubuntu2) ... Setting up libpython3.5-dev:amd64 (3.5.2-3ubuntu2) ... Setting up bowtie2 (2.2.9-4) ... Setting up python3.5-dev (3.5.2-3ubuntu2) ... Setting up libpython3-dev:amd64 (3.5.1-4) ... Setting up python3 (3.5.1-4) ... Setting up rake (10.5.0-2) ... Setting up python3-dev (3.5.1-4) ... Setting up python3-pkg-resources (26.1.1-1) ... Setting up fastaq (3.13.0-1) ... Setting up dh-strip-nondeterminism (0.023-2) ... Setting up python3-pysam (0.9.1.4+ds-1) ... Setting up python3-nose (1.3.7-2) ... Setting up python3-setuptools (26.1.1-1) ... Setting up python3-pymummer (0.7.1-1) ... Setting up python3-dendropy (4.1.0+dfsg-1) ... Setting up libruby2.3:amd64 (2.3.1-5) ... Setting up dh-python (2.20160818) ... Setting up dh-autoreconf (12) ... Setting up ruby2.3 (2.3.1-5) ... Setting up ruby (1:2.3.0+4) ... Setting up debhelper (9.20160709ubuntu1) ... Setting up asciidoctor (1.5.4-2) ... Setting up sbuild-build-depends-ariba-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-95-generic amd64 (x86_64) Toolchain package versions: binutils_2.27-8ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-5_5.4.1-1ubuntu2 g++-6_6.2.0-2ubuntu11 gcc-5_5.4.1-1ubuntu2 gcc-6_6.2.0-2ubuntu11 libc6-dev_2.24-0ubuntu1 libstdc++-5-dev_5.4.1-1ubuntu2 libstdc++-6-dev_6.2.0-2ubuntu11 libstdc++6_6.2.0-2ubuntu11 linux-libc-dev_4.4.0-9136.55 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3~rc2ubuntu3 apt-transport-https_1.3~rc2ubuntu3 asciidoctor_1.5.4-2 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20160430.1 base-files_9.6ubuntu4 base-passwd_3.5.40 bash_4.3-15ubuntu1 bcftools_1.3.1-1 binutils_2.27-8ubuntu1 bowtie2_2.2.9-4 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28.1-1ubuntu1 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 cd-hit_4.6.6-2 coreutils_8.25-2ubuntu2 cpp_4:6.1.1-1ubuntu2 cpp-5_5.4.1-1ubuntu2 cpp-6_6.2.0-2ubuntu11 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_9.20160709ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-python_2.20160818 dh-strip-nondeterminism_0.023-2 diffutils_1:3.3-3 dmsetup_2:1.02.130-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-1ubuntu2 fastaq_3.13.0-1 file_1:5.28-2ubuntu1 findutils_4.6.0+git+20160703-2 g++_4:6.1.1-1ubuntu2 g++-5_5.4.1-1ubuntu2 g++-6_6.2.0-2ubuntu11 gawk_1:4.1.3+dfsg-0.1 gcc_4:6.1.1-1ubuntu2 gcc-5_5.4.1-1ubuntu2 gcc-5-base_5.4.1-1ubuntu2 gcc-6_6.2.0-2ubuntu11 gcc-6-base_6.2.0-2ubuntu11 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gnupg_1.4.20-6ubuntu1 gpgv_1.4.20-6ubuntu1 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 help2man_1.47.4 hostname_3.18 init_1.42 init-system-helpers_1.42 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu4 libapt-pkg5.0_1.3~rc2ubuntu3 libarchive-zip-perl_1.59-1 libasan2_5.4.1-1ubuntu2 libasan3_6.2.0-2ubuntu11 libasn1-8-heimdal_1.7~git20160703+dfsg-1 libatomic1_6.2.0-2ubuntu11 libattr1_1:2.4.47-2 libaudit-common_1:2.6.5-1ubuntu1 libaudit1_1:2.6.5-1ubuntu1 libblkid1_2.28.1-1ubuntu1 libbz2-1.0_1.0.6-8build1 libc-bin_2.24-0ubuntu1 libc-dev-bin_2.24-0ubuntu1 libc6_2.24-0ubuntu1 libc6-dev_2.24-0ubuntu1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcapnp-0.5.3_0.5.3-2ubuntu1 libcc1-0_6.2.0-2ubuntu11 libcilkrts5_6.2.0-2ubuntu11 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.50.1-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.130-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libexpat1_2.2.0-1 libexpat1-dev_2.2.0-1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.28.1-1ubuntu1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.023-2 libfml-dev_0.1-2 libfml0_0.1-2 libgcc-5-dev_5.4.1-1ubuntu2 libgcc-6-dev_6.2.0-2ubuntu11 libgcc1_1:6.2.0-2ubuntu11 libgcrypt20_1.7.2-2ubuntu1 libgdbm3_1.8.3-14 libglib2.0-0_2.49.5-2 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.3-3ubuntu1 libgomp1_6.2.0-2ubuntu11 libgpg-error0_1.24-1 libgsl2_2.1+dfsg-2 libgssapi-krb5-2_1.14.3+dfsg-1ubuntu1 libgssapi3-heimdal_1.7~git20160703+dfsg-1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1 libheimbase1-heimdal_1.7~git20160703+dfsg-1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1 libhogweed4_3.2-1 libhts1_1.3.1-2ubuntu1 libhx509-5-heimdal_1.7~git20160703+dfsg-1 libicu57_57.1-3 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.17.1-1 libitm1_6.2.0-2ubuntu11 libk5crypto3_1.14.3+dfsg-1ubuntu1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1 libkrb5-3_1.14.3+dfsg-1ubuntu1 libkrb5support0_1.14.3+dfsg-1ubuntu1 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblocale-gettext-perl_1.07-3 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_6.2.0-2ubuntu11 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2.1ubuntu1 libmagic1_1:5.28-2ubuntu1 libminimap-dev_0.2-3 libminimap0_0.2-3 libmount1_2.28.1-1ubuntu1 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.4-2 libmpx0_5.4.1-1ubuntu2 libmpx2_6.2.0-2ubuntu11 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.39-1 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1ubuntu1 libpng16-16_1.6.24-2 libprocps4_2:3.3.10-4ubuntu2 libprocps6_2:3.3.12-1ubuntu2 libpython-stdlib_2.7.11-2 libpython2.7-minimal_2.7.12-2 libpython2.7-stdlib_2.7.12-2 libpython3-dev_3.5.1-4 libpython3-stdlib_3.5.1-4 libpython3.5_3.5.2-3ubuntu2 libpython3.5-dev_3.5.2-3ubuntu2 libpython3.5-minimal_3.5.2-3ubuntu2 libpython3.5-stdlib_3.5.2-3ubuntu2 libquadmath0_6.2.0-2ubuntu11 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libruby2.3_2.3.1-5 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28.1-1ubuntu1 libsqlite3-0_3.14.1-1 libss2_1.43.1-1 libssl1.0.0_1.0.2g-1ubuntu8 libstdc++-5-dev_5.4.1-1ubuntu2 libstdc++-6-dev_6.2.0-2ubuntu11 libstdc++6_6.2.0-2ubuntu11 libsystemd0_231-5 libtasn1-6_4.9-4 libtbb2_4.4~20160526-0ubuntu1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-1 libtsan0_6.2.0-2ubuntu11 libubsan0_6.2.0-2ubuntu11 libudev1_231-5 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28.1-1ubuntu1 libwind0-heimdal_1.7~git20160703+dfsg-1 libxml2_2.9.4+dfsg1-1 libyaml-0-2_0.1.6-3 linux-libc-dev_4.4.0-9136.55 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu6 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mash_1.1-3 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.28.1-1ubuntu1 multiarch-support_2.24-0ubuntu1 mummer_3.23+dfsg-1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu8 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu6 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 pkg-create-dbgsym_0.72 pkgbinarymangler_130 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.11-2 python-minimal_2.7.11-2 python2.7_2.7.12-2 python2.7-minimal_2.7.12-2 python3_3.5.1-4 python3-dendropy_4.1.0+dfsg-1 python3-dev_3.5.1-4 python3-minimal_3.5.1-4 python3-nose_1.3.7-2 python3-pkg-resources_26.1.1-1 python3-pymummer_0.7.1-1 python3-pysam_0.9.1.4+ds-1 python3-setuptools_26.1.1-1 python3.5_3.5.2-3ubuntu2 python3.5-dev_3.5.2-3ubuntu2 python3.5-minimal_3.5.2-3ubuntu2 rake_10.5.0-2 readline-common_6.3-8ubuntu2 ruby_1:2.3.0+4 ruby-did-you-mean_1.0.0-2 ruby-minitest_5.9.0-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_0.3.0-1 ruby-test-unit_3.1.7-2 ruby2.3_2.3.1-5 rubygems-integration_1.10 samtools_1.3.1-2 sbuild-build-depends-ariba-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 systemd_231-5 systemd-sysv_231-5 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1 tzdata_2016f-1 ubuntu-keyring_2016.05.13 util-linux_2.28.1-1ubuntu1 xz-utils_5.1.1alpha+20120614-2.1ubuntu1 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Thu Aug 18 20:35:58 2016 UTC using RSA key ID F09F4872 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ariba_2.2.1+ds-1.dsc dpkg-source: info: extracting ariba in ariba-2.2.1+ds dpkg-source: info: unpacking ariba_2.2.1+ds.orig.tar.xz dpkg-source: info: unpacking ariba_2.2.1+ds-1.debian.tar.xz dpkg-source: info: applying rename-cdhit.patch dpkg-source: info: applying use_debian_packaged_libs_for_extension.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«BUILDDIR»/ariba-2.2.1+ds SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«BUILDDIR»/ariba-2.2.1+ds' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: info: source package ariba dpkg-buildpackage: info: source version 2.2.1+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build ariba-2.2.1+ds dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/«BUILDDIR»/ariba-2.2.1+ds' rm -rf /«BUILDDIR»/ariba-2.2.1+ds/debian/man dh_auto_clean -- I: pybuild base:184: python3.5 setup.py clean running clean removing '/«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.5' does not exist -- can't clean it make[1]: Leaving directory '/«BUILDDIR»/ariba-2.2.1+ds' dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:184: python3.5 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:184: /usr/bin/python3 setup.py build running build running build_py creating /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/read_store.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/versions.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/report.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/ref_preparer.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/sequence_metadata.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/aln_to_metadata.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/assembly_compare.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/cdhit.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/refdata_query.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/samtools_variants.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/sequence_variant.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/ref_genes_getter.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/__init__.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/bam_parse.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/summary.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/best_seq_chooser.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/mash.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/summary_cluster_variant.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/external_progs.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/vfdb_parser.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/faidx.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/card_record.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/histogram.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/assembly.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/summary_cluster.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/reference_data.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/common.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/clusters.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/flag.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/report_filter.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/cluster.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/assembly_variants.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/summary_sample.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/scaffold_graph.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/read_filter.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/link.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba copying ariba/mapping.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba creating /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/tasks copying ariba/tasks/aln2meta.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/tasks copying ariba/tasks/run.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/tasks copying ariba/tasks/test.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/tasks copying ariba/tasks/__init__.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/tasks copying ariba/tasks/summary.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/tasks copying ariba/tasks/version.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/tasks copying ariba/tasks/reportfilter.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/tasks copying ariba/tasks/flag.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/tasks copying ariba/tasks/prepareref.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/tasks copying ariba/tasks/refquery.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/tasks copying ariba/tasks/getref.py -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/tasks creating /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/test_run_data copying ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/test_run_data copying ariba/test_run_data/reads_1.fq -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/test_run_data copying ariba/test_run_data/ref_seqs.fa -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/test_run_data copying ariba/test_run_data/metadata.tsv -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/test_run_data copying ariba/test_run_data/reads_2.fq -> /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/ariba/test_run_data running build_ext building 'minimap_ariba' extension creating build creating build/temp.linux-x86_64-3.5 creating build/temp.linux-x86_64-3.5/ariba creating build/temp.linux-x86_64-3.5/ariba/ext x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/«BUILDDIR»/ariba-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/minimap -I/usr/include/python3.5m -c ariba/ext/minimap_ariba.cpp -o build/temp.linux-x86_64-3.5/ariba/ext/minimap_ariba.o cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/«BUILDDIR»/ariba-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.5/ariba/ext/minimap_ariba.o -o /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/minimap_ariba.cpython-35m-x86_64-linux-gnu.so -lz -lminimap building 'fermilite_ariba' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/«BUILDDIR»/ariba-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c ariba/ext/fml-asm_ariba.cpp -o build/temp.linux-x86_64-3.5/ariba/ext/fml-asm_ariba.o cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/«BUILDDIR»/ariba-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.5/ariba/ext/fml-asm_ariba.o -o /«BUILDDIR»/ariba-2.2.1+ds/.pybuild/pythonX.Y_3.5/build/fermilite_ariba.cpython-35m-x86_64-linux-gnu.so -lz -lfml running build_scripts creating build/scripts-3.5 copying and adjusting scripts/ariba -> build/scripts-3.5 changing mode of build/scripts-3.5/ariba from 664 to 775 debian/rules override_dh_auto_test make[1]: Entering directory '/«BUILDDIR»/ariba-2.2.1+ds' python3 setup.py nosetests running nosetests running egg_info creating ariba.egg-info writing ariba.egg-info/PKG-INFO writing requirements to ariba.egg-info/requires.txt writing top-level names to ariba.egg-info/top_level.txt writing dependency_links to ariba.egg-info/dependency_links.txt writing manifest file 'ariba.egg-info/SOURCES.txt' reading manifest file 'ariba.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.h' under directory 'third_party' writing manifest file 'ariba.egg-info/SOURCES.txt' building 'minimap_ariba' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/«BUILDDIR»/ariba-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/minimap -I/usr/include/python3.5m -c ariba/ext/minimap_ariba.cpp -o build/temp.linux-x86_64-3.5/ariba/ext/minimap_ariba.o cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ creating build/lib.linux-x86_64-3.5 x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/«BUILDDIR»/ariba-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.5/ariba/ext/minimap_ariba.o -o build/lib.linux-x86_64-3.5/minimap_ariba.cpython-35m-x86_64-linux-gnu.so -lz -lminimap building 'fermilite_ariba' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/«BUILDDIR»/ariba-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c ariba/ext/fml-asm_ariba.cpp -o build/temp.linux-x86_64-3.5/ariba/ext/fml-asm_ariba.o cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/«BUILDDIR»/ariba-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.5/ariba/ext/fml-asm_ariba.o -o build/lib.linux-x86_64-3.5/fermilite_ariba.cpython-35m-x86_64-linux-gnu.so -lz -lfml copying build/lib.linux-x86_64-3.5/minimap_ariba.cpython-35m-x86_64-linux-gnu.so -> copying build/lib.linux-x86_64-3.5/fermilite_ariba.cpython-35m-x86_64-linux-gnu.so -> ..............Warning: position has a gap in sequence seq3 corresponding to variant A2D (id1) in sequence seq1 ... Ignoring for seq3 Warning: position has a gap in sequence seq1 corresponding to variant F2E (id2) in sequence seq5 ... Ignoring for seq1 Warning: position has a gap in sequence seq2 corresponding to variant F2E (id2) in sequence seq5 ... Ignoring for seq2 .Warning: position has a gap in sequence seq3 corresponding to variant C5T (id1) in sequence seq1 ... Ignoring for seq3 Warning: position has a gap in sequence seq1 corresponding to variant A5T (id2) in sequence seq5 ... Ignoring for seq1 Warning: position has a gap in sequence seq2 corresponding to variant A5T (id2) in sequence seq5 ... Ignoring for seq2 ...Warning: position has a gap in sequence seq3 corresponding to variant A2D (id1) in sequence seq1 ... Ignoring for seq3 Warning: position has a gap in sequence seq1 corresponding to variant F2E (id2) in sequence seq5 ... Ignoring for seq1 Warning: position has a gap in sequence seq2 corresponding to variant F2E (id2) in sequence seq5 ... Ignoring for seq2 .Warning: position has a gap in sequence seq3 corresponding to variant C5T (id1) in sequence seq1 ... Ignoring for seq3 Warning: position has a gap in sequence seq1 corresponding to variant A5T (id2) in sequence seq5 ... Ignoring for seq1 Warning: position has a gap in sequence seq2 corresponding to variant A5T (id2) in sequence seq5 ... Ignoring for seq2 ...............................................The following command failed with exit code 139 /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/tmp.get_total_aln_score.2125xm1b/tmp.get_total_alignment_score.ref.fa /«BUILDDIR»/ariba-2.2.1+ds/tmp.get_total_aln_score.2125xm1b/tmp.get_total_alignment_score.map_index The output was: Building a SMALL index Segmentation fault (core dumped) EThe following command failed with exit code 139 /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/tmp.get_total_aln_score.6orheqr8/tmp.get_total_alignment_score.ref.fa /«BUILDDIR»/ariba-2.2.1+ds/tmp.get_total_aln_score.6orheqr8/tmp.get_total_alignment_score.map_index The output was: Building a SMALL index Segmentation fault (core dumped) EThe following command failed with exit code 139 /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/tmp.get_total_aln_score.ol_9rehn/tmp.get_total_alignment_score.ref.fa /«BUILDDIR»/ariba-2.2.1+ds/tmp.get_total_aln_score.ol_9rehn/tmp.get_total_alignment_score.map_index The output was: Building a SMALL index Segmentation fault (core dumped) E.....Missing data from foo Missing data from foo Missing data from foo Missing data from foo Missing data from foo Missing data from foo Missing data from foo ...............The following command failed with exit code 139 /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/tmp.cluster_test_full_run_ok_samtools_snp_known_position_var_only_noncoding/assembly.fa /«BUILDDIR»/ariba-2.2.1+ds/tmp.cluster_test_full_run_ok_samtools_snp_known_position_var_only_noncoding/assembly.reads_mapped.map_index The output was: Building a SMALL index Segmentation fault (core dumped) EThe following command failed with exit code 139 /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/tmp.cluster_test_full_run_ok_samtools_snp_known_position_var_only_noncoding/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_gene/assembly.fa /«BUILDDIR»/ariba-2.2.1+ds/tmp.cluster_test_full_run_ok_samtools_snp_known_position_var_only_noncoding/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_gene/assembly.reads_mapped.map_index The output was: Building a SMALL index Segmentation fault (core dumped) EThe following command failed with exit code 139 /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/tmp.cluster_test_full_run_ok_samtools_snp_known_position_var_only_noncoding/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_gene/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_noncoding/assembly.fa /«BUILDDIR»/ariba-2.2.1+ds/tmp.cluster_test_full_run_ok_samtools_snp_known_position_var_only_noncoding/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_gene/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_noncoding/assembly.reads_mapped.map_index The output was: Building a SMALL index Segmentation fault (core dumped) E.The following command failed with exit code 139 /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/tmp.cluster_test_full_run_ok_samtools_snp_known_position_var_only_noncoding/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_gene/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_noncoding/tmp.cluster_test_full_run_ok_gene_start_mismatch/assembly.fa /«BUILDDIR»/ariba-2.2.1+ds/tmp.cluster_test_full_run_ok_samtools_snp_known_position_var_only_noncoding/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_gene/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_noncoding/tmp.cluster_test_full_run_ok_gene_start_mismatch/assembly.reads_mapped.map_index The output was: Building a SMALL index Segmentation fault (core dumped) EThe following command failed with exit code 139 /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/tmp.cluster_test_full_run_ok_samtools_snp_known_position_var_only_noncoding/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_gene/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_noncoding/tmp.cluster_test_full_run_ok_gene_start_mismatch/tmp.test_full_run_ok_non_coding/assembly.fa /«BUILDDIR»/ariba-2.2.1+ds/tmp.cluster_test_full_run_ok_samtools_snp_known_position_var_only_noncoding/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_gene/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_noncoding/tmp.cluster_test_full_run_ok_gene_start_mismatch/tmp.test_full_run_ok_non_coding/assembly.reads_mapped.map_index The output was: Building a SMALL index Segmentation fault (core dumped) EThe following command failed with exit code 139 /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/tmp.cluster_test_full_run_ok_samtools_snp_known_position_var_only_noncoding/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_gene/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_noncoding/tmp.cluster_test_full_run_ok_gene_start_mismatch/tmp.test_full_run_ok_non_coding/tmp.cluster_test_full_run_ok_presence_absence/assembly.fa /«BUILDDIR»/ariba-2.2.1+ds/tmp.cluster_test_full_run_ok_samtools_snp_known_position_var_only_noncoding/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_gene/tmp.cluster_test_full_run_ok_samtools_snp_known_position_pres_abs_noncoding/tmp.cluster_test_full_run_ok_gene_start_mismatch/tmp.test_full_run_ok_non_coding/tmp.cluster_test_full_run_ok_presence_absence/assembly.reads_mapped.map_index The output was: Building a SMALL index Segmentation fault (core dumped) E..................................................The following command failed with exit code 139 /usr/bin/bowtie2-build -q tmp.test_bowtie2_index.ref.fa tmp.test_bowtie2_index.ref.out The output was: Building a SMALL index Segmentation fault (core dumped) E.The following command failed with exit code 139 /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/data/mapping_test_bowtie2_ref.fa tmp.out.bowtie2.map_index The output was: Building a SMALL index Segmentation fault (core dumped) EThe following command failed with exit code 139 /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/data/mapping_test_bowtie2_ref.fa tmp.out.bowtie2.map_index The output was: Building a SMALL index Segmentation fault (core dumped) EThe following command failed with exit code 139 /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/data/mapping_test_bowtie2_ref.fa tmp.out.bowtie2_remove_both_unmapped.map_index The output was: Building a SMALL index Segmentation fault (core dumped) E.....................WARNING: sequence "variants_only_not_in_fasta" found in metadata, but not in fasta file. Ignoring it. WARNING: sequence "non_coding_not_in_fasta" found in metadata, but not in fasta file. Ignoring it. WARNING: sequence "presence_absence_not_in_fasta" found in metadata, but not in fasta file. Ignoring it. .......WARNING: sequence "seq3" found in metadata, but not in fasta file. Ignoring it. .......Had to rename some sequences. See tmp.test_rename_sequences.out for old -> new names ......................................................................................................... ====================================================================== ERROR: test best_seq ---------------------------------------------------------------------- Traceback (most recent call last): File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/best_seq_chooser_test.py", line 67, in test_best_seq got_seq = chooser.best_seq(tmp_file) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/best_seq_chooser.py", line 90, in best_seq seq_name = self._get_best_seq_by_alignment_score() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/best_seq_chooser.py", line 77, in _get_best_seq_by_alignment_score score = self._total_alignment_score(seq.id) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/best_seq_chooser.py", line 54, in _total_alignment_score verbose_filehandle=self.log_fh File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 63, in run_bowtie2 bowtie2_index(ref_fa, map_index, bowtie2=bowtie2, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 29, in bowtie2_index common.syscall(cmd, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/common.py", line 22, in syscall sys.exit(1) SystemExit: 1 -------------------- >> begin captured stdout << --------------------- Choosing best sequence from cluster of 3 sequences... syscall: /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/tmp.get_total_aln_score.2125xm1b/tmp.get_total_alignment_score.ref.fa /«BUILDDIR»/ariba-2.2.1+ds/tmp.get_total_aln_score.2125xm1b/tmp.get_total_alignment_score.map_index --------------------- >> end captured stdout << ---------------------- ====================================================================== ERROR: test _get_best_seq_by_alignment_score ---------------------------------------------------------------------- Traceback (most recent call last): File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/best_seq_chooser_test.py", line 42, in test_get_best_seq_by_alignment_score self.assertEqual('1', chooser._get_best_seq_by_alignment_score()) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/best_seq_chooser.py", line 77, in _get_best_seq_by_alignment_score score = self._total_alignment_score(seq.id) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/best_seq_chooser.py", line 54, in _total_alignment_score verbose_filehandle=self.log_fh File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 63, in run_bowtie2 bowtie2_index(ref_fa, map_index, bowtie2=bowtie2, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 29, in bowtie2_index common.syscall(cmd, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/common.py", line 22, in syscall sys.exit(1) SystemExit: 1 -------------------- >> begin captured stdout << --------------------- Choosing best sequence from cluster of 3 sequences... syscall: /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/tmp.get_total_aln_score.6orheqr8/tmp.get_total_alignment_score.ref.fa /«BUILDDIR»/ariba-2.2.1+ds/tmp.get_total_aln_score.6orheqr8/tmp.get_total_alignment_score.map_index --------------------- >> end captured stdout << ---------------------- ====================================================================== ERROR: test _total_alignment_score ---------------------------------------------------------------------- Traceback (most recent call last): File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/best_seq_chooser_test.py", line 26, in test_total_alignment_score self.assertEqual(3000, chooser._total_alignment_score('1')) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/best_seq_chooser.py", line 54, in _total_alignment_score verbose_filehandle=self.log_fh File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 63, in run_bowtie2 bowtie2_index(ref_fa, map_index, bowtie2=bowtie2, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 29, in bowtie2_index common.syscall(cmd, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/common.py", line 22, in syscall sys.exit(1) SystemExit: 1 -------------------- >> begin captured stdout << --------------------- syscall: /usr/bin/bowtie2-build -q /«BUILDDIR»/ariba-2.2.1+ds/tmp.get_total_aln_score.ol_9rehn/tmp.get_total_alignment_score.ref.fa /«BUILDDIR»/ariba-2.2.1+ds/tmp.get_total_aln_score.ol_9rehn/tmp.get_total_alignment_score.map_index --------------------- >> end captured stdout << ---------------------- ====================================================================== ERROR: test complete run where samtools calls a snp at a known snp location in a presence/absence noncoding and sample has the var ---------------------------------------------------------------------- Traceback (most recent call last): File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/cluster_test.py", line 437, in test_full_run_cluster_test_full_run_smtls_snp_varonly_nonc c.run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/cluster.py", line 280, in run self._run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/cluster.py", line 330, in _run self.assembly.run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/assembly.py", line 404, in run verbose_filehandle=self.log_fh File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 63, in run_bowtie2 bowtie2_index(ref_fa, map_index, bowtie2=bowtie2, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 29, in bowtie2_index common.syscall(cmd, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/common.py", line 22, in syscall sys.exit(1) SystemExit: 1 ====================================================================== ERROR: test complete run where samtools calls a snp at a known snp location in a presence/absence gene ---------------------------------------------------------------------- Traceback (most recent call last): File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/cluster_test.py", line 310, in test_full_run_known_smtls_snp_presabs_gene c.run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/cluster.py", line 280, in run self._run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/cluster.py", line 330, in _run self.assembly.run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/assembly.py", line 404, in run verbose_filehandle=self.log_fh File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 63, in run_bowtie2 bowtie2_index(ref_fa, map_index, bowtie2=bowtie2, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 29, in bowtie2_index common.syscall(cmd, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/common.py", line 22, in syscall sys.exit(1) SystemExit: 1 ====================================================================== ERROR: test complete run where samtools calls a snp at a known snp location in a presence/absence noncoding ---------------------------------------------------------------------- Traceback (most recent call last): File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/cluster_test.py", line 399, in test_full_run_known_smtls_snp_presabs_nonc c.run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/cluster.py", line 280, in run self._run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/cluster.py", line 330, in _run self.assembly.run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/assembly.py", line 404, in run verbose_filehandle=self.log_fh File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 63, in run_bowtie2 bowtie2_index(ref_fa, map_index, bowtie2=bowtie2, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 29, in bowtie2_index common.syscall(cmd, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/common.py", line 22, in syscall sys.exit(1) SystemExit: 1 ====================================================================== ERROR: test complete run where gene extended because too different at end for full nucmer match ---------------------------------------------------------------------- Traceback (most recent call last): File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/cluster_test.py", line 260, in test_full_run_ok_gene_start_mismatch c.run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/cluster.py", line 280, in run self._run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/cluster.py", line 330, in _run self.assembly.run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/assembly.py", line 404, in run verbose_filehandle=self.log_fh File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 63, in run_bowtie2 bowtie2_index(ref_fa, map_index, bowtie2=bowtie2, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 29, in bowtie2_index common.syscall(cmd, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/common.py", line 22, in syscall sys.exit(1) SystemExit: 1 ====================================================================== ERROR: test complete run of cluster on a noncoding sequence ---------------------------------------------------------------------- Traceback (most recent call last): File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/cluster_test.py", line 160, in test_full_run_ok_non_coding c.run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/cluster.py", line 280, in run self._run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/cluster.py", line 330, in _run self.assembly.run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/assembly.py", line 404, in run verbose_filehandle=self.log_fh File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 63, in run_bowtie2 bowtie2_index(ref_fa, map_index, bowtie2=bowtie2, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 29, in bowtie2_index common.syscall(cmd, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/common.py", line 22, in syscall sys.exit(1) SystemExit: 1 ====================================================================== ERROR: test complete run of cluster on a presence absence gene ---------------------------------------------------------------------- Traceback (most recent call last): File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/cluster_test.py", line 184, in test_full_run_ok_presence_absence c.run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/cluster.py", line 280, in run self._run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/cluster.py", line 330, in _run self.assembly.run() File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/assembly.py", line 404, in run verbose_filehandle=self.log_fh File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 63, in run_bowtie2 bowtie2_index(ref_fa, map_index, bowtie2=bowtie2, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 29, in bowtie2_index common.syscall(cmd, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/common.py", line 22, in syscall sys.exit(1) SystemExit: 1 ====================================================================== ERROR: test bowtie2_index ---------------------------------------------------------------------- Traceback (most recent call last): File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/mapping_test.py", line 35, in test_bowtie2_index mapping.bowtie2_index(tmp_ref, tmp_out, bowtie2=extern_progs.exe('bowtie2')) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 29, in bowtie2_index common.syscall(cmd, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/common.py", line 22, in syscall sys.exit(1) SystemExit: 1 ====================================================================== ERROR: Test run_bowtie2 unsorted ---------------------------------------------------------------------- Traceback (most recent call last): File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/mapping_test.py", line 58, in test_run_bowtie2 bowtie2=extern_progs.exe('bowtie2'), File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 63, in run_bowtie2 bowtie2_index(ref_fa, map_index, bowtie2=bowtie2, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 29, in bowtie2_index common.syscall(cmd, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/common.py", line 22, in syscall sys.exit(1) SystemExit: 1 ====================================================================== ERROR: Test run_bowtie2 sorted ---------------------------------------------------------------------- Traceback (most recent call last): File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/mapping_test.py", line 101, in test_run_bowtie2_and_sort bowtie2=extern_progs.exe('bowtie2'), File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 63, in run_bowtie2 bowtie2_index(ref_fa, map_index, bowtie2=bowtie2, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 29, in bowtie2_index common.syscall(cmd, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/common.py", line 22, in syscall sys.exit(1) SystemExit: 1 ====================================================================== ERROR: Test run_bowtie2 unsorted remove both unmapped ---------------------------------------------------------------------- Traceback (most recent call last): File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/tests/mapping_test.py", line 80, in test_run_bowtie2_remove_both_unmapped remove_both_unmapped=True, File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 63, in run_bowtie2 bowtie2_index(ref_fa, map_index, bowtie2=bowtie2, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/mapping.py", line 29, in bowtie2_index common.syscall(cmd, verbose=verbose, verbose_filehandle=verbose_filehandle) File "/«BUILDDIR»/ariba-2.2.1+ds/ariba/common.py", line 22, in syscall sys.exit(1) SystemExit: 1 ---------------------------------------------------------------------- Ran 291 tests in 111.543s FAILED (errors=13) make[1]: *** [override_dh_auto_test] Error 1 debian/rules:23: recipe for target 'override_dh_auto_test' failed make[1]: Leaving directory '/«BUILDDIR»/ariba-2.2.1+ds' make: *** [build] Error 2 debian/rules:10: recipe for target 'build' failed dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160831-1946 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 12192 Build-Time: 137 Distribution: yakkety-proposed Fail-Stage: build Host Architecture: amd64 Install-Time: 52 Job: ariba_2.2.1+ds-1.dsc Machine Architecture: amd64 Package: ariba Package-Time: 191 Source-Version: 2.2.1+ds-1 Space: 12192 Status: attempted Version: 2.2.1+ds-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160831-1946 Build needed 00:03:11, 12192k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-10636804'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-10636804/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-10636804'] Unmounting chroot for build PACKAGEBUILD-10636804... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-10636804'] Removing build PACKAGEBUILD-10636804