https://launchpad.net/ubuntu/+source/ataqv/1.3.1+ds-2build2/+build/27949799 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-012 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:54:35 UTC 2024 ppc64le Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu20.04.1 python3-lpbuildd_236~650~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 22 Mar 16:25:20 ntpdate[1961]: adjust time server 10.211.37.1 offset -0.000180 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27949799 --image-type chroot /home/buildd/filecache-default/d42c54d6e204d222772cc047f01d282d9c30a0e5 Creating target for build PACKAGEBUILD-27949799 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27949799 Starting target for build PACKAGEBUILD-27949799 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27949799 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27949799 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27949799 Updating target for build PACKAGEBUILD-27949799 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el Packages [1378 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [518 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el Packages [14.9 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6039 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [670 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [239 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4100 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [1553 kB] Fetched 29.9 MB in 7s (4053 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libnettle8* libnpth0* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-13-powerpc64le-linux-gnu gcc-14-base gcc-powerpc64le-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages have been kept back: apt apt-utils optipng The following packages will be upgraded: base-files base-passwd bash bash-completion binutils binutils-common binutils-powerpc64le-linux-gnu bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblsan0 liblzma5 libmd0 libmount1 libncursesw6 libnsl-dev libnsl2 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpng16-16 libproc2-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base pinentry-curses procps psmisc readline-common sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 155 upgraded, 20 newly installed, 11 to remove and 3 not upgraded. Need to get 116 MB of archives. After this operation, 83.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnsl-dev ppc64el 1.3.0-3build2 [80.3 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [167 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libc6-dev ppc64el 2.39-0ubuntu6 [2102 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu6 [21.3 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtirpc-common all 1.3.4+ds-1.1 [8018 B] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1.1 [225 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnss-nisplus ppc64el 1.3-5 [27.4 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtirpc3t64 ppc64el 1.3.4+ds-1.1 [102 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgssapi-krb5-2 ppc64el 1.20.1-5.1ubuntu1 [184 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkrb5-3 ppc64el 1.20.1-5.1ubuntu1 [432 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libk5crypto3 ppc64el 1.20.1-5.1ubuntu1 [108 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkrb5support0 ppc64el 1.20.1-5.1ubuntu1 [38.6 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libacl1 ppc64el 2.3.2-1 [21.4 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libapparmor1 ppc64el 4.0.0-beta3-0ubuntu2 [55.0 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libaudit-common all 1:3.1.2-2.1 [5674 B] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcap-ng0 ppc64el 0.8.4-2build1 [16.2 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libaudit1 ppc64el 1:3.1.2-2.1 [52.8 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblkid1 ppc64el 2.39.3-9ubuntu2 [155 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libcap2 ppc64el 1:2.66-5ubuntu1 [35.6 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt1 ppc64el 1:4.4.36-4 [125 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libgpg-error-l10n all 1.47-3build1 [8024 B] Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libgpg-error0 ppc64el 1.47-3build1 [87.6 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcrypt20 ppc64el 1.10.3-2 [745 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblzma5 ppc64el 5.6.0-0.2 [156 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libzstd1 ppc64el 1.5.5+dfsg2-2 [390 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkmod2 ppc64el 31+20240202-2ubuntu4 [64.4 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-8-0 ppc64el 10.42-4ubuntu1 [263 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libselinux1 ppc64el 3.5-2ubuntu1 [101 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmount1 ppc64el 2.39.3-9ubuntu2 [169 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-modules-5.38 all 5.38.2-3.2 [3110 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdb5.3t64 ppc64el 5.3.28+dfsg2-6 [875 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm6t64 ppc64el 1.23-5.1 [41.9 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm-compat4t64 ppc64el 1.23-5.1 [6972 B] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libperl5.38t64 ppc64el 5.38.2-3.2 [4957 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl ppc64el 5.38.2-3.2 [231 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-base ppc64el 5.38.2-3.2 [1916 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblocale-gettext-perl ppc64el 1.07-6ubuntu3 [16.0 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtext-iconv-perl ppc64el 1.7-8build2 [13.7 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtext-charwidth-perl ppc64el 0.04-11build2 [9506 B] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libc6 ppc64el 2.39-0ubuntu6 [3274 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libc-bin ppc64el 2.39-0ubuntu6 [751 kB] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd-shared ppc64el 255.4-1ubuntu5 [2351 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcryptsetup12 ppc64el 2:2.7.0-1ubuntu2 [376 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-dev all 255.4-1ubuntu5 [103 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-sysv ppc64el 255.4-1ubuntu5 [11.9 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd ppc64el 255.4-1ubuntu5 [3771 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd0 ppc64el 255.4-1ubuntu5 [526 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-modules-bin ppc64el 1.5.3-5ubuntu3 [57.9 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-modules ppc64el 1.5.3-5ubuntu3 [320 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el bzip2 ppc64el 1.0.8-5ubuntu1 [37.6 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-1.0 ppc64el 1.0.8-5ubuntu1 [48.8 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g ppc64el 1:1.3.dfsg-3.1ubuntu1 [72.8 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el debconf-i18n all 1.5.86 [205 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el debconf all 1.5.86 [124 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam0g ppc64el 1.5.3-5ubuntu3 [75.7 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libseccomp2 ppc64el 2.5.5-1ubuntu2 [62.5 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el libargon2-1 ppc64el 0~20190702+dfsg-4 [27.1 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libudev1 ppc64el 255.4-1ubuntu5 [200 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.185-3ubuntu2 [182 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libuuid1 ppc64el 2.39.3-9ubuntu2 [39.3 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfdisk1 ppc64el 2.39.3-9ubuntu2 [171 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el mount ppc64el 2.39.3-9ubuntu2 [125 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcom-err2 ppc64el 1.47.0-2.4~exp1ubuntu2 [22.9 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el libkeyutils1 ppc64el 1.6.3-3 [11.0 kB] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnsl2 ppc64el 1.3.0-3build2 [48.9 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-libc-dev ppc64el 6.8.0-20.20 [1586 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-14-base ppc64el 14-20240315-1ubuntu1 [47.0 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgcc-s1 ppc64el 14-20240315-1ubuntu1 [39.2 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main ppc64el base-files ppc64el 13ubuntu7 [74.5 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main ppc64el debianutils ppc64el 5.17 [90.4 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el bash ppc64el 5.2.21-2ubuntu2 [977 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bsdutils ppc64el 1:2.39.3-9ubuntu2 [98.3 kB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el coreutils ppc64el 9.4-3ubuntu3 [1523 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libp11-kit0 ppc64el 0.25.3-4ubuntu1 [315 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libunistring5 ppc64el 1.1-2 [556 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el libgnutls30 ppc64el 3.8.3-1ubuntu1 [1052 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnettle8t64 ppc64el 3.9.1-2.2 [226 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libstdc++6 ppc64el 14-20240315-1ubuntu1 [897 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main ppc64el libxxhash0 ppc64el 0.8.2-2 [30.4 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libapt-pkg6.0t64 ppc64el 2.7.13ubuntu1 [1063 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el tar ppc64el 1.35+dfsg-3 [307 kB] Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dpkg ppc64el 1.22.6ubuntu4 [1342 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el dash ppc64el 0.5.12-6ubuntu4 [109 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el diffutils ppc64el 1:3.10-1 [200 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main ppc64el grep ppc64el 3.11-4 [189 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main ppc64el gzip ppc64el 1.12-1ubuntu2 [114 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main ppc64el hostname ppc64el 3.23+nmu2ubuntu1 [11.3 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main ppc64el login ppc64el 1:4.13+dfsg1-4ubuntu1 [205 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main ppc64el ncurses-bin ppc64el 6.4+20240113-1ubuntu1 [202 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main ppc64el sed ppc64el 4.9-2 [223 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el util-linux ppc64el 2.39.3-9ubuntu2 [1195 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdebconfclient0 ppc64el 0.271ubuntu2 [11.2 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el base-passwd ppc64el 3.6.3 [52.5 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main ppc64el ncurses-base all 6.4+20240113-1ubuntu1 [25.4 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main ppc64el sysvinit-utils ppc64el 3.08-6ubuntu2 [35.7 kB] Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el logsave ppc64el 1.47.0-2.4~exp1ubuntu2 [22.9 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libext2fs2t64 ppc64el 1.47.0-2.4~exp1ubuntu2 [270 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el e2fsprogs ppc64el 1.47.0-2.4~exp1ubuntu2 [663 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg ppc64el 2.4.4-2ubuntu15 [706 kB] Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libreadline8t64 ppc64el 8.2-3.1 [182 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgconf ppc64el 2.4.4-2ubuntu15 [115 kB] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg-agent ppc64el 2.4.4-2ubuntu15 [275 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main ppc64el libnpth0t64 ppc64el 1.6-3.1 [8864 B] Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el readline-common all 8.2-3.1 [56.4 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main ppc64el libncursesw6 ppc64el 6.4+20240113-1ubuntu1 [186 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main ppc64el libtinfo6 ppc64el 6.4+20240113-1ubuntu1 [129 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main ppc64el init ppc64el 1.66ubuntu1 [6190 B] Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsmartcols1 ppc64el 2.39.3-9ubuntu2 [79.0 kB] Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el uuid-runtime ppc64el 2.39.3-9ubuntu2 [33.8 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main ppc64el libattr1 ppc64el 1:2.5.2-1 [12.4 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main ppc64el libmd0 ppc64el 1.1.0-2 [30.4 kB] Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsemanage-common all 3.5-1build4 [10.1 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main ppc64el libsepol2 ppc64el 3.5-2 [386 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsemanage2 ppc64el 3.5-1build4 [115 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main ppc64el passwd ppc64el 1:4.13+dfsg1-4ubuntu1 [878 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgv ppc64el 2.4.4-2ubuntu15 [198 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main ppc64el libffi8 ppc64el 3.4.6-1 [27.7 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main ppc64el libidn2-0 ppc64el 2.3.7-2 [69.8 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main ppc64el ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el g++-13 ppc64el 13.2.0-19ubuntu1 [14.5 kB] Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-13 ppc64el 13.2.0-19ubuntu1 [477 kB] Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el cpp-13 ppc64el 13.2.0-19ubuntu1 [1040 B] Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-19ubuntu1 [10.7 MB] Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcc1-0 ppc64el 14-20240315-1ubuntu1 [48.1 kB] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libctf0 ppc64el 2.42-4ubuntu1 [112 kB] Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libctf-nobfd0 ppc64el 2.42-4ubuntu1 [112 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsframe1 ppc64el 2.42-4ubuntu1 [16.0 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.42-4ubuntu1 [2473 kB] Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libbinutils ppc64el 2.42-4ubuntu1 [699 kB] Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el binutils ppc64el 2.42-4ubuntu1 [3078 B] Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el binutils-common ppc64el 2.42-4ubuntu1 [217 kB] Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libstdc++-13-dev ppc64el 13.2.0-19ubuntu1 [2448 kB] Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgomp1 ppc64el 14-20240315-1ubuntu1 [161 kB] Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libitm1 ppc64el 14-20240315-1ubuntu1 [32.2 kB] Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libatomic1 ppc64el 14-20240315-1ubuntu1 [10.7 kB] Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libasan8 ppc64el 14-20240315-1ubuntu1 [2973 kB] Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblsan0 ppc64el 14-20240315-1ubuntu1 [1325 kB] Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgcc-13-dev ppc64el 13.2.0-19ubuntu1 [1582 kB] Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtsan2 ppc64el 14-20240315-1ubuntu1 [2702 kB] Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libubsan1 ppc64el 14-20240315-1ubuntu1 [1193 kB] Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libquadmath0 ppc64el 14-20240315-1ubuntu1 [158 kB] Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-19ubuntu1 [20.6 MB] Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el g++-13-powerpc64le-linux-gnu ppc64el 13.2.0-19ubuntu1 [12.2 MB] Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-13-base ppc64el 13.2.0-19ubuntu1 [47.8 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main ppc64el libproc2-0 ppc64el 2:4.0.4-4ubuntu1 [68.8 kB] Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libss2 ppc64el 1.47.0-2.4~exp1ubuntu2 [18.0 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main ppc64el mawk ppc64el 1.3.4.20240123-1 [138 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main ppc64el procps ppc64el 2:4.0.4-4ubuntu1 [735 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main ppc64el sensible-utils all 0.0.22 [22.5 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main ppc64el ca-certificates all 20240203 [159 kB] Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el krb5-locales all 1.20.1-5.1ubuntu1 [13.9 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main ppc64el libip4tc2 ppc64el 1.8.10-3ubuntu1 [26.9 kB] Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsqlite3-0 ppc64el 3.45.1-1ubuntu1 [804 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main ppc64el tzdata all 2024a-1ubuntu1 [273 kB] Get:159 http://ftpmaster.internal/ubuntu noble/main ppc64el bash-completion all 1:2.11-8 [180 kB] Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bsdextrautils ppc64el 2.39.3-9ubuntu2 [78.6 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main ppc64el libpng16-16 ppc64el 1.6.43-1 [242 kB] Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el psmisc ppc64el 23.7-1 [192 kB] Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el xz-utils ppc64el 5.6.0-0.2 [281 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main ppc64el g++ ppc64el 4:13.2.0-7ubuntu1 [1086 B] Get:165 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc ppc64el 4:13.2.0-7ubuntu1 [5022 B] Get:166 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp ppc64el 4:13.2.0-7ubuntu1 [22.5 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [5330 B] Get:168 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1224 B] Get:169 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [968 B] Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dpkg-dev all 1.22.6ubuntu4 [1074 kB] Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdpkg-perl all 1.22.6ubuntu4 [268 kB] Get:172 http://ftpmaster.internal/ubuntu noble/main ppc64el lto-disabled-list all 47 [12.4 kB] Get:173 http://ftpmaster.internal/ubuntu noble/main ppc64el libfakeroot ppc64el 1.33-1 [34.4 kB] Get:174 http://ftpmaster.internal/ubuntu noble/main ppc64el fakeroot ppc64el 1.33-1 [69.2 kB] Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el pinentry-curses ppc64el 1.2.1-3ubuntu4 [38.7 kB] Preconfiguring packages ... Fetched 116 MB in 7s (16.0 MB/s) (Reading database ... 13550 files and directories currently installed.) Preparing to unpack .../0-libnsl-dev_1.3.0-3build2_ppc64el.deb ... Unpacking libnsl-dev:ppc64el (1.3.0-3build2) over (1.3.0-2build2) ... Preparing to unpack .../1-libcrypt-dev_1%3a4.4.36-4_ppc64el.deb ... Unpacking libcrypt-dev:ppc64el (1:4.4.36-4) over (1:4.4.36-2) ... Preparing to unpack .../2-libc6-dev_2.39-0ubuntu6_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.39-0ubuntu6) over (2.38-1ubuntu6) ... Preparing to unpack .../3-libc-dev-bin_2.39-0ubuntu6_ppc64el.deb ... Unpacking libc-dev-bin (2.39-0ubuntu6) over (2.38-1ubuntu6) ... Preparing to unpack .../4-libtirpc-common_1.3.4+ds-1.1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.3+ds-1) ... Preparing to unpack .../5-libtirpc-dev_1.3.4+ds-1.1_ppc64el.deb ... Unpacking libtirpc-dev:ppc64el (1.3.4+ds-1.1) over (1.3.3+ds-1) ... Preparing to unpack .../6-libnss-nisplus_1.3-5_ppc64el.deb ... Unpacking libnss-nisplus:ppc64el (1.3-5) over (1.3-0ubuntu6) ... dpkg: libtirpc3:ppc64el: dependency problems, but removing anyway as you requested: libnsl2:ppc64el depends on libtirpc3 (>= 1.0.2). (Reading database ... 13553 files and directories currently installed.) Removing libtirpc3:ppc64el (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3t64:ppc64el. (Reading database ... 13547 files and directories currently installed.) Preparing to unpack .../0-libtirpc3t64_1.3.4+ds-1.1_ppc64el.deb ... Adding 'diversion of /lib/powerpc64le-linux-gnu/libtirpc.so.3 to /lib/powerpc64le-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/powerpc64le-linux-gnu/libtirpc.so.3.0.0 to /lib/powerpc64le-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:ppc64el (1.3.4+ds-1.1) ... Preparing to unpack .../1-libgssapi-krb5-2_1.20.1-5.1ubuntu1_ppc64el.deb ... 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Unpacking perl-modules-5.38 (5.38.2-3.2) ... dpkg: libdb5.3:ppc64el: dependency problems, but removing anyway as you requested: libperl5.36:ppc64el depends on libdb5.3. libpam-modules:ppc64el depends on libdb5.3. apt-utils depends on libdb5.3. (Reading database ... 14971 files and directories currently installed.) Removing libdb5.3:ppc64el (5.3.28+dfsg2-2) ... Selecting previously unselected package libdb5.3t64:ppc64el. (Reading database ... 14965 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_ppc64el.deb ... Unpacking libdb5.3t64:ppc64el (5.3.28+dfsg2-6) ... dpkg: libgdbm6:ppc64el: dependency problems, but removing anyway as you requested: libperl5.36:ppc64el depends on libgdbm6 (>= 1.21). libgdbm-compat4:ppc64el depends on libgdbm6 (>= 1.16). (Reading database ... 14971 files and directories currently installed.) Removing libgdbm6:ppc64el (1.23-3) ... Selecting previously unselected package libgdbm6t64:ppc64el. (Reading database ... 14966 files and directories currently installed.) Preparing to unpack .../libgdbm6t64_1.23-5.1_ppc64el.deb ... Unpacking libgdbm6t64:ppc64el (1.23-5.1) ... dpkg: libgdbm-compat4:ppc64el: dependency problems, but removing anyway as you requested: libperl5.36:ppc64el depends on libgdbm-compat4 (>= 1.18-3). (Reading database ... 14972 files and directories currently installed.) Removing libgdbm-compat4:ppc64el (1.23-3) ... Selecting previously unselected package libgdbm-compat4t64:ppc64el. (Reading database ... 14967 files and directories currently installed.) Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_ppc64el.deb ... Unpacking libgdbm-compat4t64:ppc64el (1.23-5.1) ... Selecting previously unselected package libperl5.38t64:ppc64el. Preparing to unpack .../libperl5.38t64_5.38.2-3.2_ppc64el.deb ... Unpacking libperl5.38t64:ppc64el (5.38.2-3.2) ... Preparing to unpack .../perl-base_5.38.2-3.2_ppc64el.deb ... Unpacking perl-base (5.38.2-3.2) over (5.36.0-9ubuntu1) ... Setting up perl-base (5.38.2-3.2) ... (Reading database ... 15499 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu3_ppc64el.deb ... Unpacking liblocale-gettext-perl (1.07-6ubuntu3) over (1.07-6) ... Preparing to unpack .../libtext-iconv-perl_1.7-8build2_ppc64el.deb ... Unpacking libtext-iconv-perl:ppc64el (1.7-8build2) over (1.7-8) ... Preparing to unpack .../libtext-charwidth-perl_0.04-11build2_ppc64el.deb ... Unpacking libtext-charwidth-perl:ppc64el (0.04-11build2) over (0.04-11) ... Preparing to unpack .../libc6_2.39-0ubuntu6_ppc64el.deb ... Unpacking libc6:ppc64el (2.39-0ubuntu6) over (2.38-1ubuntu6) ... Setting up libc6:ppc64el (2.39-0ubuntu6) ... (Reading database ... 15503 files and directories currently installed.) Preparing to unpack .../libc-bin_2.39-0ubuntu6_ppc64el.deb ... Unpacking libc-bin (2.39-0ubuntu6) over (2.38-1ubuntu6) ... Setting up libc-bin (2.39-0ubuntu6) ... (Reading database ... 15503 files and directories currently installed.) Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu2) ... Preparing to unpack .../libsystemd-shared_255.4-1ubuntu5_ppc64el.deb ... Unpacking libsystemd-shared:ppc64el (255.4-1ubuntu5) over (253.5-1ubuntu6) ... Preparing to unpack .../libcryptsetup12_2%3a2.7.0-1ubuntu2_ppc64el.deb ... Unpacking libcryptsetup12:ppc64el (2:2.7.0-1ubuntu2) over (2:2.6.1-4ubuntu3) ... dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: systemd depends on libssl3 (>= 3.0.0). (Reading database ... 15502 files and directories currently installed.) Removing libssl3:ppc64el (3.0.10-1ubuntu2) ... Selecting previously unselected package libssl3t64:ppc64el. (Reading database ... 15491 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... Preparing to unpack .../systemd-dev_255.4-1ubuntu5_all.deb ... Unpacking systemd-dev (255.4-1ubuntu5) over (253.5-1ubuntu6) ... Preparing to unpack .../systemd-sysv_255.4-1ubuntu5_ppc64el.deb ... Unpacking systemd-sysv (255.4-1ubuntu5) over (253.5-1ubuntu6) ... Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... (Reading database ... 15546 files and directories currently installed.) Preparing to unpack .../systemd_255.4-1ubuntu5_ppc64el.deb ... Unpacking systemd (255.4-1ubuntu5) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd0_255.4-1ubuntu5_ppc64el.deb ... 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Setting up libfakeroot:ppc64el (1.33-1) ... Setting up libkrb5support0:ppc64el (1.20.1-5.1ubuntu1) ... Setting up tzdata (2024a-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Mar 22 16:26:02 UTC 2024. Universal Time is now: Fri Mar 22 16:26:02 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1) ... Setting up gcc-13-base:ppc64el (13.2.0-19ubuntu1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.6.0-0.2) ... Setting up perl-modules-5.38 (5.38.2-3.2) ... Setting up libquadmath0:ppc64el (14-20240315-1ubuntu1) ... Setting up libproc2-0:ppc64el (2:4.0.4-4ubuntu1) ... Setting up libpng16-16:ppc64el (1.6.43-1) ... Setting up libatomic1:ppc64el (14-20240315-1ubuntu1) ... Setting up libss2:ppc64el (1.47.0-2.4~exp1ubuntu2) ... Setting up libncursesw6:ppc64el (6.4+20240113-1ubuntu1) ... Setting up libk5crypto3:ppc64el (1.20.1-5.1ubuntu1) ... Setting up logsave (1.47.0-2.4~exp1ubuntu2) ... Setting up libdb5.3t64:ppc64el (5.3.28+dfsg2-6) ... Setting up libubsan1:ppc64el (14-20240315-1ubuntu1) ... Setting up sensible-utils (0.0.22) ... Setting up uuid-runtime (2.39.3-9ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libcrypt-dev:ppc64el (1:4.4.36-4) ... Setting up libasan8:ppc64el (14-20240315-1ubuntu1) ... Setting up procps (2:4.0.4-4ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1) ... Setting up libkrb5-3:ppc64el (1.20.1-5.1ubuntu1) ... Setting up libperl5.38t64:ppc64el (5.38.2-3.2) ... Setting up libtsan2:ppc64el (14-20240315-1ubuntu1) ... Setting up libbinutils:ppc64el (2.42-4ubuntu1) ... Setting up libc-dev-bin (2.39-0ubuntu6) ... Setting up cpp-13-powerpc64le-linux-gnu (13.2.0-19ubuntu1) ... Setting up openssl (3.0.13-0ubuntu2) ... Setting up libgpg-error-l10n (1.47-3build1) ... Setting up readline-common (8.2-3.1) ... Setting up libcc1-0:ppc64el (14-20240315-1ubuntu1) ... Setting up liblocale-gettext-perl (1.07-6ubuntu3) ... Setting up liblsan0:ppc64el (14-20240315-1ubuntu1) ... Setting up libitm1:ppc64el (14-20240315-1ubuntu1) ... Setting up cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up libctf0:ppc64el (2.42-4ubuntu1) ... Setting up pinentry-curses (1.2.1-3ubuntu4) ... Setting up cpp-13 (13.2.0-19ubuntu1) ... Setting up debconf-i18n (1.5.86) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2) ... Setting up libgssapi-krb5-2:ppc64el (1.20.1-5.1ubuntu1) ... Setting up libdpkg-perl (1.22.6ubuntu4) ... Setting up libreadline8t64:ppc64el (8.2-3.1) ... Setting up libgcc-13-dev:ppc64el (13.2.0-19ubuntu1) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up gpgconf (2.4.4-2ubuntu15) ... Setting up libc6-dev:ppc64el (2.39-0ubuntu6) ... Setting up binutils-powerpc64le-linux-gnu (2.42-4ubuntu1) ... Setting up gpg (2.4.4-2ubuntu15) ... Setting up libstdc++-13-dev:ppc64el (13.2.0-19ubuntu1) ... Setting up gpg-agent (2.4.4-2ubuntu15) ... Setting up libtirpc3t64:ppc64el (1.3.4+ds-1.1) ... Setting up binutils (2.42-4ubuntu1) ... Setting up dpkg-dev (1.22.6ubuntu4) ... Setting up libtirpc-dev:ppc64el (1.3.4+ds-1.1) ... Setting up gcc-13-powerpc64le-linux-gnu (13.2.0-19ubuntu1) ... Setting up gcc-13 (13.2.0-19ubuntu1) ... Setting up libnsl2:ppc64el (1.3.0-3build2) ... Setting up libnss-nisplus:ppc64el (1.3-5) ... Setting up g++-13-powerpc64le-linux-gnu (13.2.0-19ubuntu1) ... Setting up gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up libnsl-dev:ppc64el (1.3.0-3build2) ... Setting up g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up g++-13 (13.2.0-19ubuntu1) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Processing triggers for libc-bin (2.39-0ubuntu6) ... Processing triggers for debianutils (5.17) ... (Reading database ... 15644 files and directories currently installed.) Purging configuration files for libssl3:ppc64el (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27949799 ppc64el noble-proposed -c chroot:build-PACKAGEBUILD-27949799 --arch=ppc64el --dist=noble-proposed --nolog ataqv_1.3.1+ds-2build2.dsc Initiating build PACKAGEBUILD-27949799 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:54:35 UTC 2024 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-ppc64el-012.buildd +==============================================================================+ | ataqv 1.3.1+ds-2build2 (ppc64el) Fri, 22 Mar 2024 16:26:06 +0000 | +==============================================================================+ Package: ataqv Version: 1.3.1+ds-2build2 Source Version: 1.3.1+ds-2build2 Distribution: noble-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27949799/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/ataqv-kcTbI4/resolver-lGYYsg' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ataqv_1.3.1+ds-2build2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/ataqv-kcTbI4/ataqv-1.3.1+ds' with '<>' I: NOTICE: Log filtering will replace 'build/ataqv-kcTbI4' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libboost-filesystem-dev, libboost-iostreams-dev, libboost-system-dev, libboost-chrono-dev, libhts-dev, libncurses-dev, zlib1g-dev, libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, help2man, python3, node-d3, debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libboost-filesystem-dev, libboost-iostreams-dev, libboost-system-dev, libboost-chrono-dev, libhts-dev, libncurses-dev, zlib1g-dev, libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, help2man, python3, node-d3, debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [492 B] Get:5 copy:/<>/apt_archive ./ Packages [570 B] Fetched 2019 B in 0s (151 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file fonts-font-awesome gettext gettext-base groff-base help2man icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost1.83-dev libbrotli1 libcurl3t64-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1t64 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libgnutls30t64 libhogweed6t64 libhts-dev libhts3t64 libhtscodecs2 libicu-dev libicu74 libjs-d3-format libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libldap2 liblzma-dev libmagic-mgc libmagic1t64 libncurses-dev libncurses6 libnghttp2-14 libpipeline1 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types netbase node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-iconv-lite node-normalize.css node-rw node-safe-buffer po-debconf python3 python3-minimal python3.12 python3.12-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.83-doc libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config gnutls-bin icu-doc liblzma-doc ncurses-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libjs-html5shiv libmail-box-perl python3-doc python3-tk python3-venv python3.12-venv python3.12-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: libgnutls30* libhogweed6* The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file fonts-font-awesome gettext gettext-base groff-base help2man icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost1.83-dev libbrotli1 libcurl3t64-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1t64 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libgnutls30t64 libhogweed6t64 libhts-dev libhts3t64 libhtscodecs2 libicu-dev libicu74 libjs-d3-format libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libldap2 liblzma-dev libmagic-mgc libmagic1t64 libncurses-dev libncurses6 libnghttp2-14 libpipeline1 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types netbase node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-iconv-lite node-normalize.css node-rw node-safe-buffer po-debconf python3 python3-minimal python3.12 python3.12-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 125 newly installed, 2 to remove and 3 not upgraded. Need to get 68.4 MB of archives. After this operation, 390 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [790 B] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libhogweed6t64 ppc64el 3.9.1-2.2 [208 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgnutls30t64 ppc64el 3.8.3-1.1ubuntu2 [1154 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.12-minimal ppc64el 3.12.2-4build3 [836 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libexpat1 ppc64el 2.6.1-2 [101 kB] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.12-minimal ppc64el 3.12.2-4build3 [2447 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-minimal ppc64el 3.12.2-0ubuntu1 [27.1 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el media-types all 10.1.0 [27.5 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el netbase all 6.4 [13.1 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.12-stdlib ppc64el 3.12.2-4build3 [2082 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.12 ppc64el 3.12.2-4build3 [645 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.2-0ubuntu1 [9798 B] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3 ppc64el 3.12.2-0ubuntu1 [24.1 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libicu74 ppc64el 74.2-1ubuntu1 [11.3 MB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.3ubuntu2 [840 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmagic-mgc ppc64el 1:5.45-3 [307 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmagic1t64 ppc64el 1:5.45-3 [106 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el file ppc64el 1:5.45-3 [22.7 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el gettext-base ppc64el 0.21-14ubuntu1 [42.7 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libuchardet0 ppc64el 0.0.8-1 [78.7 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el groff-base ppc64el 1.23.0-3build1 [1112 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libncurses6 ppc64el 6.4+20240113-1ubuntu1 [148 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnghttp2-14 ppc64el 1.59.0-1build1 [89.0 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libpipeline1 ppc64el 1.5.7-1 [25.8 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el man-db ppc64el 2.12.0-3build4 [1274 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el m4 ppc64el 1.4.19-4 [275 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el autoconf all 2.71-3 [339 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el autotools-dev all 20220109.1 [44.9 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el automake all 1:1.16.5-1.3ubuntu1 [558 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el autopoint all 0.21-14ubuntu1 [422 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libtool all 2.4.7-7 [166 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libsub-override-perl all 0.10-1 [10.0 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libelf1t64 ppc64el 0.190-1.1build2 [69.3 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdw1t64 ppc64el 0.190-1.1build2 [301 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el debugedit ppc64el 1:5.0-5build1 [51.4 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dwz ppc64el 0.15-1build5 [142 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el gettext ppc64el 0.21-14ubuntu1 [979 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el debhelper all 13.14.1ubuntu5 [869 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] Get:47 http://ftpmaster.internal/ubuntu noble/universe ppc64el help2man ppc64el 1.49.3 [201 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el icu-devtools ppc64el 74.2-1ubuntu1 [246 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost1.83-dev ppc64el 1.83.0-2.1ubuntu2 [10.7 MB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-atomic1.83.0 ppc64el 1.83.0-2.1ubuntu2 [240 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-atomic1.83-dev ppc64el 1.83.0-2.1ubuntu2 [235 kB] Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-chrono1.83.0t64 ppc64el 1.83.0-2.1ubuntu2 [245 kB] Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-chrono1.83-dev ppc64el 1.83.0-2.1ubuntu2 [247 kB] Get:54 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-chrono-dev ppc64el 1.83.0.1ubuntu2 [4672 B] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-filesystem1.83.0 ppc64el 1.83.0-2.1ubuntu2 [288 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-system1.83.0 ppc64el 1.83.0-2.1ubuntu2 [236 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-system1.83-dev ppc64el 1.83.0-2.1ubuntu2 [231 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libboost-filesystem1.83-dev ppc64el 1.83.0-2.1ubuntu2 [306 kB] Get:59 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-filesystem-dev ppc64el 1.83.0.1ubuntu2 [4098 B] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-regex1.83.0 ppc64el 1.83.0-2.1ubuntu2 [346 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el libicu-dev ppc64el 74.2-1ubuntu1 [12.5 MB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-regex1.83-dev ppc64el 1.83.0-2.1ubuntu2 [365 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-iostreams1.83.0 ppc64el 1.83.0-2.1ubuntu2 [259 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libboost-iostreams1.83-dev ppc64el 1.83.0-2.1ubuntu2 [264 kB] Get:65 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-iostreams-dev ppc64el 1.83.0.1ubuntu2 [4050 B] Get:66 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-system-dev ppc64el 1.83.0.1ubuntu2 [4206 B] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libbrotli1 ppc64el 1.1.0-2build1 [410 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-5ubuntu1 [23.4 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-5ubuntu1 [68.0 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libldap2 ppc64el 2.6.7+dfsg-1~exp1ubuntu6 [233 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpsl5t64 ppc64el 0.21.2-1.1 [59.0 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build6 [64.4 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssh-4 ppc64el 0.10.6-2build1 [234 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl3t64-gnutls ppc64el 8.5.0-2ubuntu7 [419 kB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl4-gnutls-dev ppc64el 8.5.0-2ubuntu7 [530 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate-dev ppc64el 1.19-1 [69.7 kB] Get:78 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhts3t64 ppc64el 1.19+ds-1.1build2 [569 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblzma-dev ppc64el 5.6.0-0.2 [208 kB] Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3.1ubuntu1 [902 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhts-dev ppc64el 1.19+ds-1.1build2 [6340 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:84 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] Get:85 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el libncurses-dev ppc64el 6.4+20240113-1ubuntu1 [485 kB] Get:87 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-array all 3.2.0+~cs5.0.6-2 [45.1 kB] Get:88 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-axis all 1.0.12+~1.0.16-1 [14.1 kB] Get:89 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-dispatch all 1.0.6+~1.0.9-1 [9774 B] Get:90 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-selection all 1.4.1+~1.4.3-1 [42.8 kB] Get:91 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-drag all 1.2.5+~1.2.5-1 [19.1 kB] Get:92 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-color all 1.4.1+~1.4.2-1 [19.9 kB] Get:93 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-interpolate all 1.4.0+~1.4.2-1 [24.0 kB] Get:94 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-ease all 1.0.7+~1.0.11-1 [12.5 kB] Get:95 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-timer all 1.0.10+~1.0.10-1 [10.6 kB] Get:96 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-transition all 1.3.2+~1.3.2-1 [28.7 kB] Get:97 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-brush all 1.1.6+~1.1.5-1 [181 kB] Get:98 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-path all 1.0.9+~1.0.9-1 [10.5 kB] Get:99 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-chord all 1.0.6+~1.0.11-1 [14.2 kB] Get:100 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-collection all 1.0.7+~1.0.10-1 [17.2 kB] Get:101 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-contour all 1.3.2+~1.3.3-1 [17.7 kB] Get:102 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-safe-buffer all 5.2.1+~cs2.1.2-3 [15.8 kB] Get:103 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-iconv-lite all 0.6.3-3 [158 kB] Get:104 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-queue all 3.0.7-13 [10.2 kB] Get:105 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-rw all 1.3.3-5 [7570 B] Get:106 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-commander all 9.4.1-1 [50.6 kB] Get:107 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-dsv all 1.2.0+~1.2.3-1 [17.7 kB] Get:108 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-fetch all 1.2.0+~1.2.2-1 [10.1 kB] Get:109 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-quadtree all 1.0.7+~1.0.9-1 [16.6 kB] Get:110 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-force all 2.1.1+~2.1.4-1 [30.9 kB] Get:111 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-d3-format all 1:1.4.5+~1.4.2-2 [18.2 kB] Get:112 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-format all 1:1.4.5+~1.4.2-2 [11.1 kB] Get:113 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-geo all 1.12.1+~1.12.4-1 [67.3 kB] Get:114 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-hierarchy all 1.1.9+~1.1.8-1 [35.1 kB] Get:115 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-polygon all 1.0.6+~1.0.8-1 [8744 B] Get:116 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-random all 1.1.2+~1.1.3-1 [9140 B] Get:117 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-time all 1.1.0+~1.1.1-1 [19.2 kB] Get:118 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-time-format all 2.3.0+~2.3.1-1 [23.8 kB] Get:119 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-scale all 2.2.2+~2.2.6-1 [43.4 kB] Get:120 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-scale-chromatic all 1.5.0+~1.5.1-1 [23.5 kB] Get:121 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-shape all 1.3.7+~1.3.8-1 [56.0 kB] Get:122 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-voronoi all 1.1.4+~1.1.9-1 [20.5 kB] Get:123 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3-zoom all 1.8.3+~1.8.4-1 [27.2 kB] Get:124 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-d3 all 5.16.0+~cs5.28.10-1 [194 kB] Get:125 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-normalize.css all 8.0.1-5 [10.8 kB] Preconfiguring packages ... Fetched 68.4 MB in 5s (13.7 MB/s) dpkg: libhogweed6:ppc64el: dependency problems, but removing anyway as you requested: libgnutls30:ppc64el depends on libhogweed6 (>= 3.6). (Reading database ... 15644 files and directories currently installed.) Removing libhogweed6:ppc64el (3.9.1-2) ... Selecting previously unselected package libhogweed6t64:ppc64el. (Reading database ... 15639 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.9.1-2.2_ppc64el.deb ... Unpacking libhogweed6t64:ppc64el (3.9.1-2.2) ... dpkg: libgnutls30:ppc64el: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.7.5). (Reading database ... 15645 files and directories currently installed.) Removing libgnutls30:ppc64el (3.8.3-1ubuntu1) ... Selecting previously unselected package libgnutls30t64:ppc64el. (Reading database ... 15636 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_ppc64el.deb ... 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Setting up libboost-filesystem-dev:ppc64el (1.83.0.1ubuntu2) ... Setting up libpython3-stdlib:ppc64el (3.12.2-0ubuntu1) ... Setting up node-d3-zoom (1.8.3+~1.8.4-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:ppc64el (1.19+ds-1.1build2) ... Setting up node-d3-fetch (1.2.0+~1.2.2-1) ... Setting up python3 (3.12.2-0ubuntu1) ... Setting up node-d3 (5.16.0+~cs5.28.10-1) ... Setting up man-db (2.12.0-3build4) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libboost-regex1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ... Setting up libboost-iostreams1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up libboost-iostreams-dev:ppc64el (1.83.0.1ubuntu2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (255.4-1ubuntu5) ... Processing triggers for libc-bin (2.39-0ubuntu6) ... (Reading database ... 37423 files and directories currently installed.) Purging configuration files for libgnutls30:ppc64el (3.8.3-1ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:54:35 UTC 2024 ppc64el (ppc64le) Toolchain package versions: binutils_2.42-4ubuntu1 dpkg-dev_1.22.6ubuntu4 g++-13_13.2.0-19ubuntu1 gcc-13_13.2.0-19ubuntu1 libc6-dev_2.39-0ubuntu6 libstdc++-13-dev_13.2.0-19ubuntu1 libstdc++6_14-20240315-1ubuntu1 linux-libc-dev_6.8.0-20.20 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.3 apt-utils_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu1 autotools-dev_20220109.1 base-files_13ubuntu7 base-passwd_3.6.3 bash_5.2.21-2ubuntu2 bash-completion_1:2.11-8 binutils_2.42-4ubuntu1 binutils-common_2.42-4ubuntu1 binutils-powerpc64le-linux-gnu_2.42-4ubuntu1 bsdextrautils_2.39.3-9ubuntu2 bsdutils_1:2.39.3-9ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5ubuntu1 ca-certificates_20240203 coreutils_9.4-3ubuntu3 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-19ubuntu1 cpp-13-powerpc64le-linux-gnu_13.2.0-19ubuntu1 cpp-powerpc64le-linux-gnu_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu4 debconf_1.5.86 debconf-i18n_1.5.86 debhelper_13.14.1ubuntu5 debianutils_5.17 debugedit_1:5.0-5build1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6ubuntu4 dpkg-dev_1.22.6ubuntu4 dwz_0.15-1build5 e2fsprogs_1.47.0-2.4~exp1ubuntu2 fakeroot_1.33-1 file_1:5.45-3 findutils_4.9.0-5 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-19ubuntu1 g++-13-powerpc64le-linux-gnu_13.2.0-19ubuntu1 g++-powerpc64le-linux-gnu_4:13.2.0-7ubuntu1 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ataqv Binary: ataqv Architecture: any Version: 1.3.1+ds-2build2 Maintainer: Ubuntu Developers Uploaders: Michael R. Crusoe Homepage: https://github.com/ParkerLab/ataqv/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/ataqv Vcs-Git: https://salsa.debian.org/med-team/ataqv.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-filesystem-dev, libboost-iostreams-dev, libboost-system-dev, libboost-chrono-dev, libhts-dev, libncurses-dev, zlib1g-dev, libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, help2man, python3, node-d3, debhelper Package-List: ataqv deb science optional arch=any Checksums-Sha1: d2533715129c79f7bc3e11a9673efedf0348303b 4068080 ataqv_1.3.1+ds.orig.tar.xz 9622808b591dc4b282124548fc47ee6479d6ece7 9548 ataqv_1.3.1+ds-2build2.debian.tar.xz Checksums-Sha256: 6e996bb0dfa6b92b17537af20680827fd66f5b91b2f0bb7268bf21ff1cffd939 4068080 ataqv_1.3.1+ds.orig.tar.xz 474153ceaed8de4091216fc2c8e9b1f818740b87b61033ae013d4bf57064dbc8 9548 ataqv_1.3.1+ds-2build2.debian.tar.xz Files: 2738a7faf0c6728c73c2b24fb895c2fa 4068080 ataqv_1.3.1+ds.orig.tar.xz f1b647b42892e65dabe518a174a914d2 9548 ataqv_1.3.1+ds-2build2.debian.tar.xz Original-Maintainer: Debian Med Packaging Team -----BEGIN PGP SIGNATURE----- iQJHBAEBCgAxFiEET7WIqEwt3nmnTHeHb6RY3R2wP3EFAmX9o+YTHGp1bGlhbmtA dWJ1bnR1LmNvbQAKCRBvpFjdHbA/cY0FEACTHB47asVZCrqc0RdR5Dqp423vT8hz QXzGBvF9YSbakqFRqRXg6KOYWU3ULx8N+qTbQ62YbJUj6afC4gInIIKDwDCWfzTO IasRLWPw67+fWMWzgOlHs8fyspgu8m3lemXVJy10PM/Y0g2P2i+1q3sxJnVlubQV OJOZT3zU0Mw+PpLPYthd07VZpRfQdwC3G4kNsqJC8/UGh7uppCZq5RO+z+2rPcT9 7H8HN0z21kMSVkeZNgB4oQ1vB3WkfdFIyx4MwfYReJwJJqsK/d94V+GwJ4TD/D4+ VVZ6vWMZY+U2q/vo35DHi2rkOhkv0xnT8+R1Fkzt6uRd68jV30LixD+B3PPP/Tec 9E0vwIQ5cywFp6f72wk5B8GLMYGIA1UUaPdF/knK65Mx2TwqrwerhzwJsMvGBuqT pQx08vTz+sAs1e9OFFzWkbeGlDoQwmOfuWsukXw5dMSP2OtmzWTT4qmWnPq9Zpu0 lPifqKnoXTmhd+l7JDGHjFAJahwqcI9w1bZC9PLo2Cc0SxhAg2Doo7jsq55jdd7M /EzN74TYtHvsMuzIRZFufIFNTTFoD9luV8DyTpQcWn8h2LJslWGv9/+unRMxKA/b p4oWLhde9POUtbWXeaf+7JfNTQsC0fa2ok3AsdLXYeWxxT1s1EcWAMnHmOfD8KZ5 tD7nY97+hwEFdA== =ycsJ -----END PGP SIGNATURE----- gpgv: Signature made Fri Mar 22 15:29:42 2024 UTC gpgv: using RSA key 4FB588A84C2DDE79A74C77876FA458DD1DB03F71 gpgv: issuer "juliank@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ataqv_1.3.1+ds-2build2.dsc: no acceptable signature found dpkg-source: info: extracting ataqv in /<> dpkg-source: info: unpacking ataqv_1.3.1+ds.orig.tar.xz dpkg-source: info: unpacking ataqv_1.3.1+ds-2build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying modernize dpkg-source: info: applying no_cov dpkg-source: info: applying python3 dpkg-source: info: applying packaged_js dpkg-source: info: applying spelling dpkg-source: info: applying clean_less dpkg-source: info: applying reproducible_build Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27949799 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27949799 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27949799 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package ataqv dpkg-buildpackage: info: source version 1.3.1+ds-2build2 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' cp -sf /usr/share/nodejs/d3/dist/d3.min.js src/web/js/d3.min.js cp -sf /usr/share/javascript/jquery-datatables-extensions/JSZip/jszip.min.js src/web/js/jszip.min.js cp -sf /usr/share/javascript/jquery-datatables-extensions/Buttons/css/buttons.dataTables.min.css src/web/css/datatables.buttons.min.css cp -sf /usr/share/javascript/jquery-datatables/css/jquery.dataTables.min.css src/web/css/datatables.min.css cp -sf /usr/share/fonts-font-awesome/css/font-awesome.min.css src/web/css/font-awesome.min.css cp -sf /usr/share/javascript/normalize.css/normalize.css src/web/css/normalize.css cp -sf /usr/share/fonts-font-awesome/fonts/* src/web/fonts/ cp -s /usr/share/javascript/jquery/jquery.min.js \ /usr/share/javascript/jquery-datatables-extensions/pdfmake/build/pdfmake.min.js \ /usr/share/javascript/jquery-datatables/jquery.dataTables.min.js \ /usr/share/javascript/jquery-datatables-extensions/Buttons/js/dataTables.buttons.min.js \ /usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.colVis.min.js \ /usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.html5.min.js \ /usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.print.min.js \ /usr/share/javascript/jquery-datatables-extensions/Responsive/js/dataTables.responsive.min.js \ src/web/js/ rm -f src/web/js/datatables.min.js make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- all testing/run_ataqv_tests make -j4 "INSTALL=install --strip-program=true" all testing/run_ataqv_tests make[2]: Entering directory '/<>' g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o build/ataqv.o -c /<>/src/cpp/ataqv.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o build/Features.o -c /<>/src/cpp/Features.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o build/HTS.o -c /<>/src/cpp/HTS.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o build/IO.o -c /<>/src/cpp/IO.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o build/Metrics.o -c /<>/src/cpp/Metrics.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o build/Peaks.o -c /<>/src/cpp/Peaks.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o build/Utils.o -c /<>/src/cpp/Utils.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/run_ataqv_tests.o -c /<>/src/cpp/run_ataqv_tests.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/test_features.o -c /<>/src/cpp/test_features.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/test_hts.o -c /<>/src/cpp/test_hts.cpp In file included from /<>/src/cpp/test_hts.cpp:3: /<>/src/cpp/test_hts.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____169()’: /<>/src/cpp/test_hts.cpp:200:57: warning: catching polymorphic type ‘class HTSException’ by value [-Wcatch-value=] 200 | REQUIRE_THROWS_AS(record_to_string(header, record), HTSException); | ^~~~~~~~~~~~ In file included from /<>/src/cpp/test_features.cpp:1: /<>/src/cpp/test_features.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____167()’: /<>/src/cpp/test_features.cpp:171:47: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=] 171 | REQUIRE_THROWS_AS(collection.add(f), std::out_of_range); | ^~~~~~~~~~~~ g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/test_io.o -c /<>/src/cpp/test_io.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/test_metrics.o -c /<>/src/cpp/test_metrics.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/test_peaks.o -c /<>/src/cpp/test_peaks.cpp In file included from /<>/src/cpp/test_peaks.cpp:1: /<>/src/cpp/test_peaks.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____172()’: /<>/src/cpp/test_peaks.cpp:181:44: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=] 181 | REQUIRE_THROWS_AS(rpc.add(peak3), std::out_of_range); | ^~~~~~~~~~~~ In file included from /<>/src/cpp/test_metrics.cpp:3: /<>/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____170()’: /<>/src/cpp/test_metrics.cpp:173:56: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=] 173 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException); | ^~~~~~~~~~~~~ /<>/src/cpp/test_metrics.cpp:178:56: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=] 178 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException); | ^~~~~~~~~~~~~ /<>/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____243()’: /<>/src/cpp/test_metrics.cpp:249:52: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=] 249 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException); | ^~~~~~~~~~~~~ /<>/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____252()’: /<>/src/cpp/test_metrics.cpp:259:52: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=] 259 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException); | ^~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_pair.h:61, from /usr/include/c++/13/tuple:38, from /usr/include/c++/13/mutex:40, from /usr/include/c++/13/future:40, from /<>/src/cpp/Metrics.cpp:10: In function ‘std::swap, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value&, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value&)std::enable_if, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value> >, std::is_move_constructible, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value>, std::is_move_assignable, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value> >::value, void>::type’, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::operator=(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>)’ at /<>/src/cpp/json.hpp:2554:13, inlined from ‘nlohmann::detail::external_constructor<(nlohmann::detail::value_t)7>::construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::number_float_t)void’ at /<>/src/cpp/json.hpp:277:15: /usr/include/c++/13/bits/move.h:198:7: warning: ‘MEM[(union json_value &)&D.340863 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 198 | __a = _GLIBCXX_MOVE(__b); | ^~~ In file included from /<>/src/cpp/Metrics.hpp:16, from /<>/src/cpp/Metrics.cpp:21: /<>/src/cpp/json.hpp: In function ‘nlohmann::detail::external_constructor<(nlohmann::detail::value_t)7>::construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::number_float_t)void’: /<>/src/cpp/json.hpp:277:15: note: ‘’ declared here 277 | j = BasicJsonType{}; | ~~^~~~~~~~~~~~~~~~~ In function ‘std::swap, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value&, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value&)std::enable_if, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value> >, std::is_move_constructible, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value>, std::is_move_assignable, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value> >::value, void>::type’, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::operator=(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>)’ at /<>/src/cpp/json.hpp:2554:13, inlined from ‘nlohmann::detail::external_constructor<(nlohmann::detail::value_t)7>::construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::number_float_t)void’ at /<>/src/cpp/json.hpp:277:15, inlined from ‘nlohmann::detail::to_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, __float128, 0>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, __float128)void’ at /<>/src/cpp/json.hpp:545:59, inlined from ‘nlohmann::detail::to_json_fn::call, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, __float128 const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, __float128 const&, nlohmann::detail::priority_tag<1u>) constdecltype ((to_json({parm#1}, (forward<__float128 const&>)({parm#2}))),((void)()))’ at /<>/src/cpp/json.hpp:837:23, inlined from ‘nlohmann::detail::to_json_fn::operator(), std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, __float128 const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, __float128 const&) constvoid’ at /<>/src/cpp/json.hpp:852:20, inlined from ‘nlohmann::adl_serializer<__float128, void>::to_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, __float128 const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, __float128 const&)void’ at /<>/src/cpp/json.hpp:942:28, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::basic_json<__float128 const&, __float128, 0>(__float128 const&)’ at /<>/src/cpp/json.hpp:2009:35, inlined from ‘std::_Construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, __float128 const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*, __float128 const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_copy<__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*>(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*)nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:120:21, inlined from ‘std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*>(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*)nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:137:32, inlined from ‘std::uninitialized_copy<__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*>(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*)nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a<__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >&)nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >::_M_range_initialize<__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > > >(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, std::forward_iterator_tag)void’ at /usr/include/c++/13/bits/stl_vector.h:1692:33, inlined from ‘std::vector, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >::vector<__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, void>(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from ‘std::__new_allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > > >(std::vector, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >*, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >&&, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >&&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::create, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > > >(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >&&, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >&&)std::vector, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >*’ at /<>/src/cpp/json.hpp:1634:24, inlined from ‘nlohmann::detail::external_constructor<(nlohmann::detail::value_t)2>::construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<__float128, std::allocator<__float128> >, 0>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::vector<__float128, std::allocator<__float128> > const&)void’ at /<>/src/cpp/json.hpp:332:77, inlined from ‘nlohmann::detail::to_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<__float128, std::allocator<__float128> >, 0>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::vector<__float128, std::allocator<__float128> > const&)void’ at /<>/src/cpp/json.hpp:581:52, inlined from ‘nlohmann::detail::to_json_fn::call, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<__float128, std::allocator<__float128> > const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::vector<__float128, std::allocator<__float128> > const&, nlohmann::detail::priority_tag<1u>) constdecltype ((to_json({parm#1}, (forward > const&>)({parm#2}))),((void)()))’ at /<>/src/cpp/json.hpp:837:23, inlined from ‘nlohmann::detail::to_json_fn::operator(), std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<__float128, std::allocator<__float128> > const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::vector<__float128, std::allocator<__float128> > const&) constvoid’ at /<>/src/cpp/json.hpp:852:20, inlined from ‘nlohmann::adl_serializer >, void>::to_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<__float128, std::allocator<__float128> > const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::vector<__float128, std::allocator<__float128> > const&)void’ at /<>/src/cpp/json.hpp:942:28, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::basic_json > const&, std::vector<__float128, std::allocator<__float128> >, 0>(std::vector<__float128, std::allocator<__float128> > const&)’ at /<>/src/cpp/json.hpp:2009:35, inlined from ‘std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> >, true>(std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)’ at /usr/include/c++/13/bits/stl_pair.h:586:22, inlined from ‘std::__new_allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::construct, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&>(std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >*, std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > > >::construct, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&>(std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >&, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >*, std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::_Select1st, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::_M_construct_node, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&>(std::_Rb_tree_node, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >*, std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)void’ at /usr/include/c++/13/bits/stl_tree.h:597:32, inlined from ‘std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::_Select1st, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::_M_create_node, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&>(std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)std::_Rb_tree_node, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >*’ at /usr/include/c++/13/bits/stl_tree.h:614:21, inlined from ‘std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::_Select1st, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::_Auto_node::_Auto_node, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&>(std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::_Select1st, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >&, std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)’ at /usr/include/c++/13/bits/stl_tree.h:1637:32, inlined from ‘std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::_Select1st, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::_M_emplace_unique, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&>(std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, bool>’ at /usr/include/c++/13/bits/stl_tree.h:2434:13, inlined from ‘std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::_Select1st, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::_M_insert_range_unique, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >(std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >)std::enable_if, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::iterator_traits, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >::value_type>::value, void>::type’ at /usr/include/c++/13/bits/stl_tree.h:1112:23, inlined from ‘std::map, std::allocator >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::map, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >(std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >)’ at /usr/include/c++/13/bits/stl_map.h:287:31, inlined from ‘std::__new_allocator, std::allocator >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > > >::construct, std::allocator >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >(std::map, std::allocator >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >*, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >&&, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >&&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::create, std::allocator >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >(std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >&&, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >&&)std::map, std::allocator >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >*’ at /<>/src/cpp/json.hpp:1634:24, inlined from ‘nlohmann::detail::external_constructor<(nlohmann::detail::value_t)1>::construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >, 0>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > > const&)void’ at /<>/src/cpp/json.hpp:358:79, inlined from ‘nlohmann::detail::to_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >, 0>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > > const&)void’ at /<>/src/cpp/json.hpp:590:53, inlined from ‘nlohmann::detail::to_json_fn::call, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&, nlohmann::detail::priority_tag<1u>) constdecltype ((to_json({parm#1}, (forward, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&>)({parm#2}))),((void)()))’ at /<>/src/cpp/json.hpp:837:23, inlined from ‘nlohmann::detail::to_json_fn::operator(), std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&) constvoid’ at /<>/src/cpp/json.hpp:852:20, inlined from ‘nlohmann::adl_serializer, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >, void>::to_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&)void’ at /<>/src/cpp/json.hpp:942:28, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::basic_json, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >, 0>(std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&)’ at /<>/src/cpp/json.hpp:2009:35, inlined from ‘Metrics::to_json[abi:cxx11]()’ at /<>/src/cpp/Metrics.cpp:1570:1: /usr/include/c++/13/bits/move.h:198:7: warning: ‘MEM[(union json_value &)&D.468588 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 198 | __a = _GLIBCXX_MOVE(__b); | ^~~ /<>/src/cpp/json.hpp: In member function ‘Metrics::to_json[abi:cxx11]()’: /<>/src/cpp/json.hpp:277:15: note: ‘’ declared here 277 | j = BasicJsonType{}; | ~~^~~~~~~~~~~~~~~~~ g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/test_utils.o -c /<>/src/cpp/test_utils.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/Features.o -c /<>/src/cpp/Features.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/HTS.o -c /<>/src/cpp/HTS.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/IO.o -c /<>/src/cpp/IO.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/Metrics.o -c /<>/src/cpp/Metrics.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/Peaks.o -c /<>/src/cpp/Peaks.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/Utils.o -c /<>/src/cpp/Utils.cpp g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o build/ataqv build/ataqv.o build/Features.o build/HTS.o build/IO.o build/Metrics.o build/Peaks.o build/Utils.o -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -lboost_filesystem -lboost_iostreams -lboost_system -lboost_chrono -lhts -lz -lncurses -lpthread In function ‘swap’, inlined from ‘operator=’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:2554:13, inlined from ‘construct’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:277:15: /usr/include/c++/13/bits/move.h:198:7: warning: ‘MEM[(union json_value &)&D.26319 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 198 | __a = _GLIBCXX_MOVE(__b); | ^ /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp: In function ‘construct’: /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:277:15: note: ‘’ declared here In function ‘swap’, inlined from ‘operator=’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:2554:13, inlined from ‘construct’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:277:15, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:545:59, inlined from ‘call’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:837:23, inlined from ‘operator()’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:852:20, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:942:28, inlined from ‘__ct ’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:2009:35, inlined from ‘_Construct’ at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘__do_uninit_copy’ at /usr/include/c++/13/bits/stl_uninitialized.h:120:21, inlined from ‘__uninit_copy’ at /usr/include/c++/13/bits/stl_uninitialized.h:137:32, inlined from ‘uninitialized_copy’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘__uninitialized_copy_a’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘_M_range_initialize’ at /usr/include/c++/13/bits/stl_vector.h:1692:33, inlined from ‘__ct ’ at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from ‘construct’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘create’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:1634:24, inlined from ‘construct’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:332:77, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:581:52, inlined from ‘call’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:837:23, inlined from ‘operator()’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:852:20, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:942:28, inlined from ‘__ct ’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:2009:35, inlined from ‘__ct ’ at /usr/include/c++/13/bits/stl_pair.h:586:22, inlined from ‘construct’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘construct’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘_M_construct_node’ at /usr/include/c++/13/bits/stl_tree.h:597:32, inlined from ‘_M_create_node’ at /usr/include/c++/13/bits/stl_tree.h:614:21, inlined from ‘__ct ’ at /usr/include/c++/13/bits/stl_tree.h:1637:32, inlined from ‘_M_emplace_unique’ at /usr/include/c++/13/bits/stl_tree.h:2434:13, inlined from ‘_M_insert_range_unique’ at /usr/include/c++/13/bits/stl_tree.h:1112:23, inlined from ‘__ct ’ at /usr/include/c++/13/bits/stl_map.h:287:31, inlined from ‘construct’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘create’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:1634:24, inlined from ‘construct’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:358:79, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:590:53, inlined from ‘call’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:837:23, inlined from ‘operator()’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:852:20, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:942:28, inlined from ‘__ct ’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:2009:35, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/Metrics.cpp:1570:1: /usr/include/c++/13/bits/move.h:198:7: warning: ‘MEM[(union json_value &)&D.41678 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 198 | __a = _GLIBCXX_MOVE(__b); | ^ /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp: In member function ‘to_json’: /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:277:15: note: ‘’ declared here In file included from /usr/include/c++/13/bits/stl_pair.h:61, from /usr/include/c++/13/tuple:38, from /usr/include/c++/13/mutex:40, from /usr/include/c++/13/future:40, from /<>/src/cpp/Metrics.cpp:10: In function ‘std::swap, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value&, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value&)std::enable_if, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value> >, std::is_move_constructible, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value>, std::is_move_assignable, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value> >::value, void>::type’, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::operator=(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>)’ at /<>/src/cpp/json.hpp:2554:13, inlined from ‘nlohmann::detail::external_constructor<(nlohmann::detail::value_t)7>::construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::number_float_t)void’ at /<>/src/cpp/json.hpp:277:15: /usr/include/c++/13/bits/move.h:198:7: warning: ‘MEM[(union json_value &)&D.340863 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 198 | __a = _GLIBCXX_MOVE(__b); | ^~~ In file included from /<>/src/cpp/Metrics.hpp:16, from /<>/src/cpp/Metrics.cpp:21: /<>/src/cpp/json.hpp: In function ‘nlohmann::detail::external_constructor<(nlohmann::detail::value_t)7>::construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::number_float_t)void’: /<>/src/cpp/json.hpp:277:15: note: ‘’ declared here 277 | j = BasicJsonType{}; | ~~^~~~~~~~~~~~~~~~~ In function ‘std::swap, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value&, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value&)std::enable_if, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value> >, std::is_move_constructible, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value>, std::is_move_assignable, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::json_value> >::value, void>::type’, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::operator=(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>)’ at /<>/src/cpp/json.hpp:2554:13, inlined from ‘nlohmann::detail::external_constructor<(nlohmann::detail::value_t)7>::construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::number_float_t)void’ at /<>/src/cpp/json.hpp:277:15, inlined from ‘nlohmann::detail::to_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, __float128, 0>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, __float128)void’ at /<>/src/cpp/json.hpp:545:59, inlined from ‘nlohmann::detail::to_json_fn::call, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, __float128 const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, __float128 const&, nlohmann::detail::priority_tag<1u>) constdecltype ((to_json({parm#1}, (forward<__float128 const&>)({parm#2}))),((void)()))’ at /<>/src/cpp/json.hpp:837:23, inlined from ‘nlohmann::detail::to_json_fn::operator(), std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, __float128 const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, __float128 const&) constvoid’ at /<>/src/cpp/json.hpp:852:20, inlined from ‘nlohmann::adl_serializer<__float128, void>::to_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, __float128 const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, __float128 const&)void’ at /<>/src/cpp/json.hpp:942:28, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::basic_json<__float128 const&, __float128, 0>(__float128 const&)’ at /<>/src/cpp/json.hpp:2009:35, inlined from ‘std::_Construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, __float128 const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*, __float128 const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_copy<__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*>(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*)nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:120:21, inlined from ‘std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*>(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*)nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:137:32, inlined from ‘std::uninitialized_copy<__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*>(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*)nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a<__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >&)nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>*’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >::_M_range_initialize<__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > > >(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, std::forward_iterator_tag)void’ at /usr/include/c++/13/bits/stl_vector.h:1692:33, inlined from ‘std::vector, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >::vector<__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, void>(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > const&)’ at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from ‘std::__new_allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > > >(std::vector, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >*, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >&&, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >&&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::create, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > > >(__gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >&&, __gnu_cxx::__normal_iterator<__float128 const*, std::vector<__float128, std::allocator<__float128> > >&&)std::vector, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::allocator, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >*’ at /<>/src/cpp/json.hpp:1634:24, inlined from ‘nlohmann::detail::external_constructor<(nlohmann::detail::value_t)2>::construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<__float128, std::allocator<__float128> >, 0>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::vector<__float128, std::allocator<__float128> > const&)void’ at /<>/src/cpp/json.hpp:332:77, inlined from ‘nlohmann::detail::to_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<__float128, std::allocator<__float128> >, 0>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::vector<__float128, std::allocator<__float128> > const&)void’ at /<>/src/cpp/json.hpp:581:52, inlined from ‘nlohmann::detail::to_json_fn::call, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<__float128, std::allocator<__float128> > const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::vector<__float128, std::allocator<__float128> > const&, nlohmann::detail::priority_tag<1u>) constdecltype ((to_json({parm#1}, (forward > const&>)({parm#2}))),((void)()))’ at /<>/src/cpp/json.hpp:837:23, inlined from ‘nlohmann::detail::to_json_fn::operator(), std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<__float128, std::allocator<__float128> > const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::vector<__float128, std::allocator<__float128> > const&) constvoid’ at /<>/src/cpp/json.hpp:852:20, inlined from ‘nlohmann::adl_serializer >, void>::to_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<__float128, std::allocator<__float128> > const&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::vector<__float128, std::allocator<__float128> > const&)void’ at /<>/src/cpp/json.hpp:942:28, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::basic_json > const&, std::vector<__float128, std::allocator<__float128> >, 0>(std::vector<__float128, std::allocator<__float128> > const&)’ at /<>/src/cpp/json.hpp:2009:35, inlined from ‘std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> >, true>(std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)’ at /usr/include/c++/13/bits/stl_pair.h:586:22, inlined from ‘std::__new_allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::construct, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&>(std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >*, std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > > >::construct, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&>(std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >&, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >*, std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::_Select1st, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::_M_construct_node, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&>(std::_Rb_tree_node, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >*, std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)void’ at /usr/include/c++/13/bits/stl_tree.h:597:32, inlined from ‘std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::_Select1st, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::_M_create_node, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&>(std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)std::_Rb_tree_node, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >*’ at /usr/include/c++/13/bits/stl_tree.h:614:21, inlined from ‘std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::_Select1st, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::_Auto_node::_Auto_node, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&>(std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::_Select1st, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >&, std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)’ at /usr/include/c++/13/bits/stl_tree.h:1637:32, inlined from ‘std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::_Select1st, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::_M_emplace_unique, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&>(std::pair, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > const&)std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, bool>’ at /usr/include/c++/13/bits/stl_tree.h:2434:13, inlined from ‘std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::_Select1st, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > >, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::_M_insert_range_unique, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >(std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >)std::enable_if, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> >, std::iterator_traits, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >::value_type>::value, void>::type’ at /usr/include/c++/13/bits/stl_tree.h:1112:23, inlined from ‘std::map, std::allocator >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >::map, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >(std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >)’ at /usr/include/c++/13/bits/stl_map.h:287:31, inlined from ‘std::__new_allocator, std::allocator >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > > >::construct, std::allocator >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >(std::map, std::allocator >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >*, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >&&, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >&&)void’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::create, std::allocator >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >(std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >&&, std::_Rb_tree_const_iterator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > >&&)std::map, std::allocator >, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::less, std::allocator > >, std::allocator, std::allocator > const, nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer> > > >*’ at /<>/src/cpp/json.hpp:1634:24, inlined from ‘nlohmann::detail::external_constructor<(nlohmann::detail::value_t)1>::construct, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >, 0>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > > const&)void’ at /<>/src/cpp/json.hpp:358:79, inlined from ‘nlohmann::detail::to_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >, 0>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > > const&)void’ at /<>/src/cpp/json.hpp:590:53, inlined from ‘nlohmann::detail::to_json_fn::call, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&, nlohmann::detail::priority_tag<1u>) constdecltype ((to_json({parm#1}, (forward, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&>)({parm#2}))),((void)()))’ at /<>/src/cpp/json.hpp:837:23, inlined from ‘nlohmann::detail::to_json_fn::operator(), std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&) constvoid’ at /<>/src/cpp/json.hpp:852:20, inlined from ‘nlohmann::adl_serializer, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >, void>::to_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&>(nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>&, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&)void’ at /<>/src/cpp/json.hpp:942:28, inlined from ‘nlohmann::basic_json, std::allocator >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>::basic_json, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&, std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >, 0>(std::map, std::allocator >, std::vector<__float128, std::allocator<__float128> >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::vector<__float128, std::allocator<__float128> > > > >&)’ at /<>/src/cpp/json.hpp:2009:35, inlined from ‘Metrics::to_json[abi:cxx11]()’ at /<>/src/cpp/Metrics.cpp:1570:1: /usr/include/c++/13/bits/move.h:198:7: warning: ‘MEM[(union json_value &)&D.468588 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 198 | __a = _GLIBCXX_MOVE(__b); | ^~~ /<>/src/cpp/json.hpp: In member function ‘Metrics::to_json[abi:cxx11]()’: /<>/src/cpp/json.hpp:277:15: note: ‘’ declared here 277 | j = BasicJsonType{}; | ~~^~~~~~~~~~~~~~~~~ g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/ataqv-1.3.1+ds-2build2 -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=3 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/src/cpp -D LINUX -o testing/run_ataqv_tests testing/run_ataqv_tests.o testing/test_features.o testing/test_hts.o testing/test_io.o testing/test_metrics.o testing/test_peaks.o testing/test_utils.o testing/Features.o testing/HTS.o testing/IO.o testing/Metrics.o testing/Peaks.o testing/Utils.o -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -lboost_filesystem -lboost_iostreams -lboost_system -lboost_chrono -lhts -lz -lncurses -lpthread In function ‘swap’, inlined from ‘operator=’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:2554:13, inlined from ‘construct’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:277:15: /usr/include/c++/13/bits/move.h:198:7: warning: ‘MEM[(union json_value &)&D.9537 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 198 | __a = _GLIBCXX_MOVE(__b); | ^ /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp: In function ‘construct’: /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:277:15: note: ‘’ declared here In function ‘swap’, inlined from ‘operator=’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:2554:13, inlined from ‘construct’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:277:15, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:545:59, inlined from ‘call’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:837:23, inlined from ‘operator()’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:852:20, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:942:28, inlined from ‘__ct ’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:2009:35, inlined from ‘_Construct’ at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘__do_uninit_copy’ at /usr/include/c++/13/bits/stl_uninitialized.h:120:21, inlined from ‘__uninit_copy’ at /usr/include/c++/13/bits/stl_uninitialized.h:137:32, inlined from ‘uninitialized_copy’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘__uninitialized_copy_a’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘_M_range_initialize’ at /usr/include/c++/13/bits/stl_vector.h:1692:33, inlined from ‘__ct ’ at /usr/include/c++/13/bits/stl_vector.h:708:23, inlined from ‘construct’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘create’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:1634:24, inlined from ‘construct’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:332:77, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:581:52, inlined from ‘call’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:837:23, inlined from ‘operator()’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:852:20, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:942:28, inlined from ‘__ct ’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:2009:35, inlined from ‘__ct ’ at /usr/include/c++/13/bits/stl_pair.h:586:22, inlined from ‘construct’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘construct’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘_M_construct_node’ at /usr/include/c++/13/bits/stl_tree.h:597:32, inlined from ‘_M_create_node’ at /usr/include/c++/13/bits/stl_tree.h:614:21, inlined from ‘__ct ’ at /usr/include/c++/13/bits/stl_tree.h:1637:32, inlined from ‘_M_emplace_unique’ at /usr/include/c++/13/bits/stl_tree.h:2434:13, inlined from ‘_M_insert_range_unique’ at /usr/include/c++/13/bits/stl_tree.h:1112:23, inlined from ‘__ct ’ at /usr/include/c++/13/bits/stl_map.h:287:31, inlined from ‘construct’ at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from ‘create’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:1634:24, inlined from ‘construct’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:358:79, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:590:53, inlined from ‘call’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:837:23, inlined from ‘operator()’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:852:20, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:942:28, inlined from ‘__ct ’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:2009:35, inlined from ‘to_json’ at /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/Metrics.cpp:1570:1: /usr/include/c++/13/bits/move.h:198:7: warning: ‘MEM[(union json_value &)&D.30280 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 198 | __a = _GLIBCXX_MOVE(__b); | ^ /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp: In member function ‘to_json’: /usr/src/ataqv-1.3.1+ds-2build2/src/cpp/json.hpp:277:15: note: ‘’ declared here make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 test make[1]: Entering directory '/<>' Reading human autosomal references from autosomal_references.gz. Autosomal references for human: I II III Reading human autosomal references from autosomal_references.gz. Autosomal references for human: I II III Reading human autosomal references from autosomal_references.gz. Autosomal references for human: I II III Read 411 excluded regions from exclude.dac.bed.gz. Read 1649 excluded regions from exclude.duke.bed.gz. Loading TSS file 'hg19.tss.refseq.bed.gz'. Excluding TSS [chr11 10530722 10530723 MTRNR2L8 0 -] which overlaps excluded region [chr11 10529403 10531969 Low_mappability_island 1000 .] Excluding TSS [chr12 118573688 118573689 PEBP1 0 +] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .] Excluding TSS [chr14 105196180 105196181 ADSSL1 0 +] which overlaps excluded region [chr14 105195912 105196275 TAR1 1000 .] Excluding TSS [chr17 22022436 22022437 MTRNR2L1 0 +] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .] Excluding TSS [chr20 55934877 55934878 MTRNR2L3 0 -] which overlaps excluded region [chr20 55932703 55936114 chrM 1000 .] Excluding TSS [chr5 79946853 79946854 MTRNR2L2 0 -] which overlaps excluded region [chr5 79945807 79948223 Low_mappability_island 1000 .] Excluding TSS [chr6 62284007 62284008 MTRNR2L9 0 +] which overlaps excluded region [chr6 62283966 62284581 Low_mappability_island 1000 .] Excluding TSS [chr7 57207570 57207571 ZNF479 0 -] which overlaps excluded region [chr7 57205319 57210318 BSR/Beta 1000 .] Excluding TSS [chr7 63688851 63688852 ZNF679 0 +] which overlaps excluded region [chr7 63686197 63693336 BSR/Beta 1000 .] Excluding TSS [chr7 142374130 142374131 MTRNR2L6 0 +] which overlaps excluded region [chr7 142372972 142375638 Low_mappability_island 1000 .] Excluding TSS [chrX 55208943 55208944 MTRNR2L10 0 -] which overlaps excluded region [chrX 55204685 55210460 chrM 1000 .] Excluding TSS [chrY 25130409 25130410 BPY2B 0 +] which overlaps excluded region [chrY 25122419 25160800 BSR/Beta 1000 .] Excluding TSS [chrY 26764150 26764151 BPY2B 0 +] which overlaps excluded region [chrY 26756160 26794538 BSR/Beta 1000 .] Excluding TSS [chrY 27198250 27198251 BPY2B 0 -] which overlaps excluded region [chrY 27167859 27206241 BSR/Beta 1000 .] chr1 feature count: 2687 chr2 feature count: 1715 chr3 feature count: 1490 chr4 feature count: 1004 chr5 feature count: 1132 chr6 feature count: 1368 chr7 feature count: 1169 chr8 feature count: 913 chr9 feature count: 1025 chr10 feature count: 1039 chr11 feature count: 1642 chr12 feature count: 1350 chr13 feature count: 433 chr14 feature count: 785 chr15 feature count: 812 chr16 feature count: 1106 chr17 feature count: 1528 chr18 feature count: 398 chr19 feature count: 1785 chr20 feature count: 694 chr21 feature count: 321 chr22 feature count: 593 Loaded 24989 TSS in 1.85157 seconds. (13496.1 TSS/second). Collecting metrics from test.bam. Logging problematic reads to SRR891275.problems. Loading peaks for read group SRR891275 from test.peaks.gz. Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000 .] Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000 .] Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000 .] Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000 .] Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000 .] Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .] Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .] Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000 .] Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .] Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .] Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000 .] Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000 .] Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000 .] Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000 .] Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000 .] Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000 .] Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .] Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .] Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .] Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .] Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .] Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000 .] Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000 .] Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000 .] Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000 .] Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .] Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .] Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .] Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000 .] Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000 .] Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000 .] Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000 .] Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000 .] Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000 .] Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .] Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .] Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000 .] Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000 .] Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .] Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .] Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000 .] Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000 .] Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000 .] Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000 .] Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000 .] Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000 .] Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000 .] Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000 .] Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000 .] Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000 .] Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000 .] Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .] Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .] Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000 .] Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000 .] Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000 .] Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000 .] Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000 .] Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000 .] Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000 .] Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000 .] Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000 .] Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .] Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .] Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000 .] Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000 .] Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000 .] Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000 .] Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .] Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .] Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .] Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .] Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000 .] Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000 .] Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000 .] Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000 .] Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000 .] Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .] Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .] Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .] Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .] Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000 .] Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000 .] Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .] Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .] Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000 .] Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000 .] Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .] Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .] Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000 .] Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .] Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .] Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000 .] Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000 .] Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000 .] Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000 .] chr1 peak count: 3667 chr2 peak count: 3154 chr3 peak count: 2528 chr4 peak count: 1814 chr5 peak count: 2042 chr6 peak count: 2483 chr7 peak count: 1999 chr8 peak count: 1647 chr9 peak count: 1475 chr10 peak count: 1815 chr11 peak count: 1878 chr12 peak count: 2078 chr13 peak count: 1026 chr14 peak count: 1275 chr15 peak count: 1140 chr16 peak count: 1211 chr17 peak count: 1664 chr18 peak count: 772 chr19 peak count: 1595 chr20 peak count: 864 chr21 peak count: 487 chr22 peak count: 662 Loaded 37276 peaks in 12.8775 seconds. (2894.66 peaks/second). Logging problematic reads to SRR891278.problems. Loading peaks for read group SRR891278 from test.peaks.gz. Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000 .] Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000 .] Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000 .] Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000 .] Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000 .] Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .] Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .] Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000 .] Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .] Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .] Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000 .] Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000 .] Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000 .] Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000 .] Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000 .] Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000 .] Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .] Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .] Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .] Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .] Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .] Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000 .] Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000 .] Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000 .] Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000 .] Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .] Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .] Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .] Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000 .] Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000 .] Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000 .] Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000 .] Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000 .] Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000 .] Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .] Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .] Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000 .] Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000 .] Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .] Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .] Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000 .] Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000 .] Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000 .] Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000 .] Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000 .] Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000 .] Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000 .] Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000 .] Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000 .] Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000 .] Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000 .] Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .] Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .] Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000 .] Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000 .] Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000 .] Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000 .] Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000 .] Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000 .] Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000 .] Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000 .] Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000 .] Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .] Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .] Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000 .] Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000 .] Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000 .] Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000 .] Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .] Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .] Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .] Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .] Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000 .] Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000 .] Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000 .] Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000 .] Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000 .] Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .] Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .] Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .] Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .] Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000 .] Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000 .] Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .] Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .] Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000 .] Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000 .] Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .] Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .] Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000 .] Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .] Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .] Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000 .] Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000 .] Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000 .] Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000 .] chr1 peak count: 3667 chr2 peak count: 3154 chr3 peak count: 2528 chr4 peak count: 1814 chr5 peak count: 2042 chr6 peak count: 2483 chr7 peak count: 1999 chr8 peak count: 1647 chr9 peak count: 1475 chr10 peak count: 1815 chr11 peak count: 1878 chr12 peak count: 2078 chr13 peak count: 1026 chr14 peak count: 1275 chr15 peak count: 1140 chr16 peak count: 1211 chr17 peak count: 1664 chr18 peak count: 772 chr19 peak count: 1595 chr20 peak count: 864 chr21 peak count: 487 chr22 peak count: 662 Loaded 37276 peaks in 13.2181 seconds. (2820.08 peaks/second). New maximum proper pair fragment length: 42 from [SRR891275.608 1123 chr1 569907 57 42M = 569907 42 CACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAA @@@FFFEFFDHFBHIJIEFHJIGGF:CFGEDF?FFHEG@FGG XA:Z:chrM,+9359,42M,1; MD:Z:42 NM:i:0 AS:i:42 XS:i:37 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 330 from [SRR891278.50 1123 chr1 569913 27 50M = 570193 330 NCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGC #1=DDFFFHHGHHJJJJIJJJGEGHIGGIIIJJJJIIFGGIJHIIJICHH XA:Z:chrM,+9365,50M,2; MD:Z:0C49 NM:i:1 AS:i:49 XS:i:44 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F] New maximum proper pair fragment length: 53 from [SRR891275.421 1187 chr1 569924 15 50M = 569927 53 TGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACC CCCFFFFFGHHHHIGIJIJIEHIGIIIJJGIJJJJGGGJJJJJGIIJJFI XA:Z:chrM,+9376,50M,1; MD:Z:50 NM:i:0 AS:i:50 XS:i:47 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 67 from [SRR891275.1617 99 chr1 2059335 60 50M = 2059352 67 CACCTTAGCTCTGGACACGAATTTGCGGTCATTGCTGTTCTTGTGTCTCT ???DB?D8C:CD42C<<*?DB<9?BBBD?9DD4 MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 112 from [SRR891275.176 99 chr1 2419720 60 50M = 2419782 112 ATCCCTGGGACTGTAGGTGGGAAGGGCATTGCAAGGCACAGGGGCGGGGA @BCFFDEDDHHHHHIJICGHI=GHIGIJJJJJIJIJIGHFHIJBHHDB87 MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 361 from [SRR891278.227 99 chr1 17047555 60 50M = 17047866 361 GACTCCCTCAAGGGCAGCTGAGAGGGAGGACTCAGGGCACTGGGGAAAGT @CCFFFFFHGHHHJGEHIIJGGJIIJDIIGGEHIIJJBFGGHGEHHIJFC XA:Z:chr1,+144886802,48M2S,2; MD:Z:50 NM:i:0 AS:i:50 XS:i:42 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F] New maximum proper pair fragment length: 216 from [SRR891275.1770 163 chr1 18154381 60 50M = 18154547 216 CAACTGTTTTGCTTACTCTGACTAATACAGAGAAGGGAGCCACAATATAC C@CFFFDFGHHHHJJJJJJJJJJJJJIEIIHIJJJIGIJIJJJCHHIJJJ MD:Z:50 NM:i:0 AS:i:50 XS:i:21 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 562 from [SRR891275.385 163 chr1 43042844 60 50M = 43043356 562 AACCTACAGGAAAAGCTGGTTCAGGAGAAATCTAAAGTTGCTGATGCAGA CCCFFFFFHGGHGJJJJFIEHHHJJGIIJIIJJJJJIHGIJIJGIIJIII MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 609 from [SRR891275.714 99 chr1 79875808 60 50M = 79876367 609 GGCCCAGCCAAGTTGACACATAAAATAAACTTTCACAATATTGCAGGCAG @@@DDDFFFHAH=... 5: 439 (84.423%) 10: 439 (84.423%) 15: 438 (84.231%) 20: 436 (83.846%) 25: 435 (83.654%) 30: 420 (80.769%) Peak Metrics ------------ Peak count: 37276 High quality autosomal alignments that overlapped peaks: 23 (11.500% of all high quality autosomal alignments) Number of high quality autosomal alignments overlapping the top 10,000 peaks: Top peak: 2 (1.000% of all high quality autosomal alignments) Top 10 peaks: 20 (10.000% of all high quality autosomal alignments) Top 100 peaks: 23 (11.500% of all high quality autosomal alignments) Top 1000 peaks: 23 (11.500% of all high quality autosomal alignments) Top 10,000 peaks: 23 (11.500% of all high quality autosomal alignments) Read Group ========== ID: SRR891278 Library: SRR891278 Sample: GSM1155967 Description: a library of brutal tests? Sequencing center: Sequencing date: Sequencing platform: ILLUMINA Platform model: Platform unit: Flow order: Key sequence: Predicted median insert size: Programs: Metrics ------- Read Mapping Metrics -------------------- Total reads: 520 Total problems: 90 (17.308%) Properly paired and mapped reads: 430 (82.692%) Secondary reads: 10 (1.923%) Supplementary reads: 0 (0.000%) Duplicate reads: 158 (30.385% of all reads) Quality Indicators ------------------ Short to mononucleosomal ratio: 2.357 High quality, nonduplicate, properly paired, uniquely mapped autosomal alignments: 200 as a percentage of autosomal reads: 91.743% as a percentage of all reads: 38.462% TSS enrichment: 3.687 Paired Read Metrics ------------------- Paired reads: 520 (100.000%) Paired and mapped reads: 440 (84.615%) FR reads: 430 (82.692308%) First of pair: 259 (49.808%) Second of pair: 261 (50.192%) Forward reads: 261 (50.192%) Reverse reads: 259 (49.808%) Forward mate reads: 260 (50.000%) Reverse mate reads: 260 (50.000%) Unmapped Read Metrics --------------------- Unmapped reads: 8 (1.538%) Unmapped mate reads: 4 (0.769%) Reads not passing quality controls: 0 (0.000%) Unpaired reads: 0 (0.000%) Reads with zero mapping quality: 49 (9.423%) Aberrant Mapping Metrics ------------------------ RF reads: 6 (1.153846%) FF reads: 4 (0.769231%) RR reads: 9 (1.730769%) Reads that paired and mapped but... on different chromosomes: 8 (1.538%) probably too far from their mates: 2 (0.385%) (longest proper fragment seems to be 649) just not properly: 0 (0.000%) Autosomal/Mitochondrial Metrics ------------------------------- Total autosomal reads: 218 (41.923% of all reads) Total mitochondrial reads: 192 (36.923% of all reads) Duplicate autosomal reads: 17 (7.798% of all autosomal reads) Duplicate mitochondrial reads: 92 (47.917% of all mitochondrial reads) Mapping Quality --------------- Mean MAPQ: 48.044 Median MAPQ: 60.000 Reads with MAPQ >=... 5: 449 (86.346%) 10: 445 (85.577%) 15: 443 (85.192%) 20: 442 (85.000%) 25: 442 (85.000%) 30: 417 (80.192%) Peak Metrics ------------ Peak count: 37276 High quality autosomal alignments that overlapped peaks: 92 (46.000% of all high quality autosomal alignments) Number of high quality autosomal alignments overlapping the top 10,000 peaks: Top peak: 2 (1.000% of all high quality autosomal alignments) Top 10 peaks: 20 (10.000% of all high quality autosomal alignments) Top 100 peaks: 92 (46.000% of all high quality autosomal alignments) Top 1000 peaks: 92 (46.000% of all high quality autosomal alignments) Top 10,000 peaks: 92 (46.000% of all high quality autosomal alignments) [E::hts_open_format] Failed to open file "missing_alignment_file.bam" : No such file or directory Read 411 excluded regions from exclude.dac.bed.gz. Read 1649 excluded regions from exclude.duke.bed.gz. Collecting metrics from test.bam. Logging problematic reads to Test collector.problems. Loading peaks for read group Test collector from test.peaks.gz. Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000.000 .] Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000.000 .] Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000.000 .] Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .] Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .] Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .] Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000.000 .] Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000.000 .] Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000.000 .] Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000.000 .] Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000.000 .] Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000.000 .] Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000.000 .] Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000.000 .] Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000.000 .] Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000.000 .] Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .] Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .] Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .] Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000.000 .] Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000.000 .] Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000.000 .] Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000.000 .] Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000.000 .] Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000.000 .] Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000.000 .] Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000.000 .] Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000.000 .] Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000.000 .] Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000.000 .] Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000.000 .] Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .] Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .] Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .] Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000.000 .] Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000.000 .] Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000.000 .] Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000.000 .] Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000.000 .] Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000.000 .] Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000.000 .] Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000.000 .] Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000.000 .] Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000.000 .] Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000.000 .] Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000.000 .] Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000.000 .] Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000.000 .] Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000.000 .] Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .] Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .] Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .] Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .] Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000.000 .] Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000.000 .] Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .] Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .] Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .] Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000.000 .] Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000.000 .] Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000.000 .] Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000.000 .] Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000.000 .] Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000.000 .] Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000.000 .] Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000.000 .] Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000.000 .] Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000.000 .] Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000.000 .] Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000.000 .] Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000.000 .] Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000.000 .] Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000.000 .] Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .] Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .] Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .] Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000.000 .] Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000.000 .] Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000.000 .] Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000.000 .] Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000.000 .] Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .] Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .] Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .] Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .] Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000.000 .] Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000.000 .] Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000.000 .] Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000.000 .] Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000.000 .] Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000.000 .] Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000.000 .] Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000.000 .] Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000.000 .] Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000.000 .] Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000.000 .] Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000.000 .] Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000.000 .] Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000.000 .] Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000.000 .] Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000.000 .] Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000.000 .] Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000.000 .] Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000.000 .] Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000.000 .] Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000.000 .] Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .] Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .] Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .] Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .] Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000.000 .] Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000.000 .] Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000.000 .] Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000.000 .] Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000.000 .] Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000.000 .] Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000.000 .] Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000.000 .] Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000.000 .] Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000.000 .] Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000.000 .] Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000.000 .] Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000.000 .] chr1 peak count: 3667 chr2 peak count: 3154 chr3 peak count: 2528 chr4 peak count: 1814 chr5 peak count: 2042 chr6 peak count: 2483 chr7 peak count: 1999 chr8 peak count: 1647 chr9 peak count: 1475 chr10 peak count: 1815 chr11 peak count: 1878 chr12 peak count: 2078 chr13 peak count: 1026 chr14 peak count: 1275 chr15 peak count: 1140 chr16 peak count: 1211 chr17 peak count: 1664 chr18 peak count: 772 chr19 peak count: 1595 chr20 peak count: 864 chr21 peak count: 487 chr22 peak count: 662 Loaded 37276 peaks in 12.794 seconds. (2913.515 peaks/second). New maximum proper pair fragment length: 42 from [SRR891275.608 1123 chr1 569907 57 42M = 569907 42 CACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAA @@@FFFEFFDHFBHIJIEFHJIGGF:CFGEDF?FFHEG@FGG XA:Z:chrM,+9359,42M,1; MD:Z:42 NM:i:0 AS:i:42 XS:i:37 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 330 from [SRR891278.50 1123 chr1 569913 27 50M = 570193 330 NCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGC #1=DDFFFHHGHHJJJJIJJJGEGHIGGIIIJJJJIIFGGIJHIIJICHH XA:Z:chrM,+9365,50M,2; MD:Z:0C49 NM:i:1 AS:i:49 XS:i:44 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F] New maximum proper pair fragment length: 361 from [SRR891278.227 99 chr1 17047555 60 50M = 17047866 361 GACTCCCTCAAGGGCAGCTGAGAGGGAGGACTCAGGGCACTGGGGAAAGT @CCFFFFFHGHHHJGEHIIJGGJIIJDIIGGEHIIJJBFGGHGEHHIJFC XA:Z:chr1,+144886802,48M2S,2; MD:Z:50 NM:i:0 AS:i:50 XS:i:42 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F] New maximum proper pair fragment length: 562 from [SRR891275.385 163 chr1 43042844 60 50M = 43043356 562 AACCTACAGGAAAAGCTGGTTCAGGAGAAATCTAAAGTTGCTGATGCAGA CCCFFFFFHGGHGJJJJFIEHHHJJGIIJIIJJJJJIHGIJIJGIIJIII MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 609 from [SRR891275.714 99 chr1 79875808 60 50M = 79876367 609 GGCCCAGCCAAGTTGACACATAAAATAAACTTTCACAATATTGCAGGCAG @@@DDDFFFHAH=... 5: 888 (85.385%) 10: 884 (85.000%) 15: 881 (84.712%) 20: 878 (84.423%) 25: 877 (84.327%) 30: 837 (80.481%) Peak Metrics ------------ Peak count: 37276 High quality autosomal alignments that overlapped peaks: 115 (28.750% of all high quality autosomal alignments) Number of high quality autosomal alignments overlapping the top 10,000 peaks: Top peak: 2 (0.500% of all high quality autosomal alignments) Top 10 peaks: 20 (5.000% of all high quality autosomal alignments) Top 100 peaks: 115 (28.750% of all high quality autosomal alignments) Top 1000 peaks: 115 (28.750% of all high quality autosomal alignments) Top 10,000 peaks: 115 (28.750% of all high quality autosomal alignments) Read 411 excluded regions from exclude.dac.bed.gz. Read 1649 excluded regions from exclude.duke.bed.gz. Collecting metrics from test.bam. Logging problematic reads to Test collector.problems. Loading peaks for read group Test collector from notthere.peaks.gz. Read 411 excluded regions from exclude.dac.bed.gz. Read 1649 excluded regions from exclude.duke.bed.gz. Loading TSS file 'notthere.bed.gz'. [E::sam_format1_append] Corrupted aux data for read SRR891268.122333488 =============================================================================== All tests passed (241 assertions in 54 test cases) make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- prefix=/usr make -j4 install DESTDIR=/<>/ataqv-1.3.1\+ds/debian/ataqv AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" prefix=/usr make[2]: Entering directory '/<>' Installing to /usr install -d -m 0755 /<>/debian/ataqv/usr/bin install -d -m 0755 /<>/debian/ataqv/usr/bin install -d -m 0755 /<>/debian/ataqv/usr/share/ataqv/web install -m 0755 build/ataqv /<>/debian/ataqv/usr/bin for f in src/scripts/make_ataqv_pipeline src/scripts/mkarv src/scripts/run_ataqv_example src/scripts/srvarv; do sed -e 's/{{VERSION}}/1.3.1/g' $f > build/$(basename $f); install -m 0755 build/$(basename $f) /<>/debian/ataqv/usr/bin; done cp -a src/web/* /<>/debian/ataqv/usr/share/ataqv/web find /<>/debian/ataqv/usr/share/ataqv/web -type d -exec chmod 755 {} \; find /<>/debian/ataqv/usr/share/ataqv/web -type f -exec chmod 644 {} \; make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a debian/rules override_dh_installman make[1]: Entering directory '/<>' help2man --no-info --name="QC metrics for ATAC-seq data" build/ataqv > debian/ataqv.1 help2man --no-info --name="Turns ataqv results into a web app" src/scripts/mkarv > debian/mkarv.1 help2man --no-info --name="serve an instance of the ataqv web results viewer" --version-string 1.3.1+ds src/scripts/srvarv > debian/srvarv.1 dh_installman make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/ataqv/usr/lib/ataqv/run_ataqv_tests: Unknown DWARF DW_FORM_0x1f20 a73eb55bd3fcd8e8264a97fd18681c4c13c6f5d2 debugedit: debian/ataqv/usr/bin/ataqv: Unknown DWARF DW_FORM_0x1f20 f93a9ad9b862e333b1066f2e0e0c008d8d105d84 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing ataqv (in debian/ataqv); do_strip: , oemstrip: pkgstriptranslations: processing ataqv-dbgsym (in debian/.debhelper/ataqv/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/ataqv/DEBIAN/control, package ataqv, directory debian/ataqv pkgstripfiles: Truncating usr/share/doc/ataqv/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/ataqv/dbgsym-root/DEBIAN/control, package ataqv-dbgsym, directory debian/.debhelper/ataqv/dbgsym-root dpkg-deb: building package 'ataqv-dbgsym' in 'debian/.debhelper/scratch-space/build-ataqv/ataqv-dbgsym_1.3.1+ds-2build2_ppc64el.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package ataqv ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ataqv' in '../ataqv_1.3.1+ds-2build2_ppc64el.deb'. Renaming ataqv-dbgsym_1.3.1+ds-2build2_ppc64el.deb to ataqv-dbgsym_1.3.1+ds-2build2_ppc64el.ddeb dpkg-genbuildinfo --build=any -O../ataqv_1.3.1+ds-2build2_ppc64el.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../ataqv_1.3.1+ds-2build2_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-03-22T16:28:24Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ataqv_1.3.1+ds-2build2_ppc64el.changes: --------------------------------------- Format: 1.8 Date: Fri, 22 Mar 2024 16:29:41 +0100 Source: ataqv Binary: ataqv Built-For-Profiles: noudeb Architecture: ppc64el Version: 1.3.1+ds-2build2 Distribution: noble-proposed Urgency: high Maintainer: Launchpad Build Daemon Changed-By: Julian Andres Klode Description: ataqv - ATAC-seq QC and visualization Changes: ataqv (1.3.1+ds-2build2) noble; urgency=high . * No change rebuild against libboost-chrono1.83.0t64, libhts3t64. Checksums-Sha1: cb4ff37417f3f3f822a7493fcc6f34f15554c6b6 4903380 ataqv-dbgsym_1.3.1+ds-2build2_ppc64el.ddeb 22a0dce9deee0b1dd2aa4c8cd50ba644224cb30b 9896 ataqv_1.3.1+ds-2build2_ppc64el.buildinfo 9d1fb3d5cfb22098fb65bced9e3e79faf7a55e26 3410854 ataqv_1.3.1+ds-2build2_ppc64el.deb Checksums-Sha256: 26e5d7e267cac1ab16768532a76efb0fd4e27a0636860214333a309c1b47f5f0 4903380 ataqv-dbgsym_1.3.1+ds-2build2_ppc64el.ddeb 87eca0cd4f7405b51ec139ddba14115c39f3d529642e023e698dbf72096fd3ed 9896 ataqv_1.3.1+ds-2build2_ppc64el.buildinfo 40a25059ecfbbc5df9cfe55373dd98511f46fa7253960e4ccffd2e5e4316585c 3410854 ataqv_1.3.1+ds-2build2_ppc64el.deb Files: 887699c26fa17538e6493155727c96d5 4903380 debug optional ataqv-dbgsym_1.3.1+ds-2build2_ppc64el.ddeb 5a56f437659f3d9be9d48777a557040c 9896 science optional ataqv_1.3.1+ds-2build2_ppc64el.buildinfo e7cf64d865748506df67261dfe5869aa 3410854 science optional ataqv_1.3.1+ds-2build2_ppc64el.deb Original-Maintainer: Debian Med Packaging Team 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40a25059ecfbbc5df9cfe55373dd98511f46fa7253960e4ccffd2e5e4316585c 3410854 ataqv_1.3.1+ds-2build2_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Fri, 22 Mar 2024 16:28:24 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu1), autotools-dev (= 20220109.1), base-files (= 13ubuntu7), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu2), binutils (= 2.42-4ubuntu1), binutils-common (= 2.42-4ubuntu1), binutils-powerpc64le-linux-gnu (= 2.42-4ubuntu1), bsdextrautils (= 2.39.3-9ubuntu2), bsdutils (= 1:2.39.3-9ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5ubuntu1), coreutils (= 9.4-3ubuntu3), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-19ubuntu1), cpp-13-powerpc64le-linux-gnu (= 13.2.0-19ubuntu1), cpp-powerpc64le-linux-gnu (= 4:13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu4), debconf (= 1.5.86), debhelper (= 13.14.1ubuntu5), 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libboost1.83-dev (= 1.83.0-2.1ubuntu2), libbrotli1 (= 1.1.0-2build1), libbz2-1.0 (= 1.0.8-5ubuntu1), libc-bin (= 2.39-0ubuntu6), libc-dev-bin (= 2.39-0ubuntu6), libc6 (= 2.39-0ubuntu6), libc6-dev (= 2.39-0ubuntu6), libcap-ng0 (= 0.8.4-2build1), libcap2 (= 1:2.66-5ubuntu1), libcc1-0 (= 14-20240315-1ubuntu1), libcom-err2 (= 1.47.0-2.4~exp1ubuntu2), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4ubuntu1), libctf0 (= 2.42-4ubuntu1), libcurl3t64-gnutls (= 8.5.0-2ubuntu7), libcurl4-gnutls-dev (= 8.5.0-2ubuntu7), libdb5.3t64 (= 5.3.28+dfsg2-6), libdebconfclient0 (= 0.271ubuntu2), libdebhelper-perl (= 13.14.1ubuntu5), libdeflate-dev (= 1.19-1), libdeflate0 (= 1.19-1), libdpkg-perl (= 1.22.6ubuntu4), libdw1t64 (= 0.190-1.1build2), libelf1t64 (= 0.190-1.1build2), libexpat1 (= 2.6.1-2), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-19ubuntu1), libgcc-s1 (= 14-20240315-1ubuntu1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1), libgdbm6t64 (= 1.23-5.1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30t64 (= 3.8.3-1.1ubuntu2), libgomp1 (= 14-20240315-1ubuntu1), libgpg-error0 (= 1.47-3build1), libgssapi-krb5-2 (= 1.20.1-5.1ubuntu1), libhogweed6t64 (= 3.9.1-2.2), libhts-dev (= 1.19+ds-1.1build2), libhts3t64 (= 1.19+ds-1.1build2), libhtscodecs2 (= 1.6.0-1), libicu-dev (= 74.2-1ubuntu1), libicu74 (= 74.2-1ubuntu1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3), libitm1 (= 14-20240315-1ubuntu1), libjansson4 (= 2.14-2), libjs-d3-format (= 1:1.4.5+~1.4.2-2), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-datatables (= 1.11.5+dfsg-2), libjs-jquery-datatables-extensions (= 0.0+git20150910.28fd64e+dfsg-5), libk5crypto3 (= 1.20.1-5.1ubuntu1), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-5.1ubuntu1), libkrb5support0 (= 1.20.1-5.1ubuntu1), libldap2 (= 2.6.7+dfsg-1~exp1ubuntu6), liblocale-gettext-perl (= 1.07-6ubuntu3), liblsan0 (= 14-20240315-1ubuntu1), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.6.0-0.2), liblzma5 (= 5.6.0-0.2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-9ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncurses-dev (= 6.4+20240113-1ubuntu1), libncurses6 (= 6.4+20240113-1ubuntu1), libncursesw6 (= 6.4+20240113-1ubuntu1), libnettle8t64 (= 3.9.1-2.2), libnghttp2-14 (= 1.59.0-1build1), libp11-kit0 (= 0.25.3-4ubuntu1), libpam-modules (= 1.5.3-5ubuntu3), libpam-modules-bin (= 1.5.3-5ubuntu3), libpam-runtime (= 1.5.3-5ubuntu3), libpam0g (= 1.5.3-5ubuntu3), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.38t64 (= 5.38.2-3.2), libpipeline1 (= 1.5.7-1), libpsl5t64 (= 0.21.2-1.1), libpython3-stdlib (= 3.12.2-0ubuntu1), libpython3.12-minimal (= 3.12.2-4build3), libpython3.12-stdlib (= 3.12.2-4build3), libquadmath0 (= 14-20240315-1ubuntu1), libreadline8t64 (= 8.2-3.1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build6), libsasl2-2 (= 2.1.28+dfsg1-5ubuntu1), libsasl2-modules-db (= 2.1.28+dfsg1-5ubuntu1), libseccomp2 (= 2.5.5-1ubuntu2), libselinux1 (= 3.5-2ubuntu1), libsframe1 (= 2.42-4ubuntu1), libsmartcols1 (= 2.39.3-9ubuntu2), libsqlite3-0 (= 3.45.1-1ubuntu1), libssh-4 (= 0.10.6-2build1), libssl3t64 (= 3.0.13-0ubuntu2), libstdc++-13-dev (= 13.2.0-19ubuntu1), libstdc++6 (= 14-20240315-1ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1ubuntu5), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20240113-1ubuntu1), libtool (= 2.4.7-7), libtsan2 (= 14-20240315-1ubuntu1), libubsan1 (= 14-20240315-1ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255.4-1ubuntu5), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-9ubuntu2), libxml2 (= 2.9.14+dfsg-1.3ubuntu2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.0-20.20), login (= 1:4.13+dfsg1-4ubuntu1), lto-disabled-list (= 47), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-3build4), mawk (= 1.3.4.20240123-1), media-types (= 10.1.0), ncurses-base (= 6.4+20240113-1ubuntu1), ncurses-bin (= 6.4+20240113-1ubuntu1), netbase (= 6.4), node-commander (= 9.4.1-1), node-d3 (= 5.16.0+~cs5.28.10-1), node-d3-array (= 3.2.0+~cs5.0.6-2), node-d3-axis (= 1.0.12+~1.0.16-1), node-d3-brush (= 1.1.6+~1.1.5-1), node-d3-chord (= 1.0.6+~1.0.11-1), node-d3-collection (= 1.0.7+~1.0.10-1), node-d3-color (= 1.4.1+~1.4.2-1), node-d3-contour (= 1.3.2+~1.3.3-1), node-d3-dispatch (= 1.0.6+~1.0.9-1), node-d3-drag (= 1.2.5+~1.2.5-1), node-d3-dsv (= 1.2.0+~1.2.3-1), node-d3-ease (= 1.0.7+~1.0.11-1), node-d3-fetch (= 1.2.0+~1.2.2-1), node-d3-force (= 2.1.1+~2.1.4-1), node-d3-format (= 1:1.4.5+~1.4.2-2), node-d3-geo (= 1.12.1+~1.12.4-1), node-d3-hierarchy (= 1.1.9+~1.1.8-1), node-d3-interpolate (= 1.4.0+~1.4.2-1), node-d3-path (= 1.0.9+~1.0.9-1), node-d3-polygon (= 1.0.6+~1.0.8-1), node-d3-quadtree (= 1.0.7+~1.0.9-1), node-d3-queue (= 3.0.7-13), node-d3-random (= 1.1.2+~1.1.3-1), node-d3-scale (= 2.2.2+~2.2.6-1), node-d3-scale-chromatic (= 1.5.0+~1.5.1-1), node-d3-selection (= 1.4.1+~1.4.3-1), node-d3-shape (= 1.3.7+~1.3.8-1), node-d3-time (= 1.1.0+~1.1.1-1), node-d3-time-format (= 2.3.0+~2.3.1-1), node-d3-timer (= 1.0.10+~1.0.10-1), node-d3-transition (= 1.3.2+~1.3.2-1), node-d3-voronoi (= 1.1.4+~1.1.9-1), node-d3-zoom (= 1.8.3+~1.8.4-1), node-iconv-lite (= 0.6.3-3), node-normalize.css (= 8.0.1-5), node-rw (= 1.3.3-5), node-safe-buffer (= 5.2.1+~cs2.1.2-3), patch (= 2.7.6-7build2), perl (= 5.38.2-3.2), perl-base (= 5.38.2-3.2), perl-modules-5.38 (= 5.38.2-3.2), po-debconf (= 1.0.21+nmu1), python3 (= 3.12.2-0ubuntu1), python3-minimal (= 3.12.2-0ubuntu1), python3.12 (= 3.12.2-4build3), python3.12-minimal (= 3.12.2-4build3), readline-common (= 8.2-3.1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-6ubuntu2), tar (= 1.35+dfsg-3), tzdata (= 2024a-1ubuntu1), util-linux (= 2.39.3-9ubuntu2), xz-utils (= 5.6.0-0.2), zlib1g (= 1:1.3.dfsg-3.1ubuntu1), zlib1g-dev (= 1:1.3.dfsg-3.1ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1711121381" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ ataqv_1.3.1+ds-2build2_ppc64el.deb ---------------------------------- new Debian package, version 2.0. size 3410854 bytes: control archive=1745 bytes. 1060 bytes, 17 lines control 2422 bytes, 32 lines md5sums Package: ataqv Version: 1.3.1+ds-2build2 Architecture: ppc64el Maintainer: Ubuntu Developers Installed-Size: 6402 Depends: libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 4.2), libhts3t64 (>= 1.17), libncurses6 (>= 6), libstdc++6 (>= 13.1), libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, python3, node-d3 Suggests: picard-tools, samtools, macs, wget Section: science Priority: optional Homepage: https://github.com/ParkerLab/ataqv/ Description: ATAC-seq QC and visualization A toolkit for measuring and comparing ATAC-seq results, made in the Parker lab at the University of Michigan. They wrote it to help understand how well their ATAC-seq assays had worked, and to make it easier to spot differences that might be caused by library prep or sequencing. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2024-03-22 15:29 ./ drwxr-xr-x root/root 0 2024-03-22 15:29 ./usr/ drwxr-xr-x root/root 0 2024-03-22 15:29 ./usr/bin/ -rwxr-xr-x root/root 527424 2024-03-22 15:29 ./usr/bin/ataqv -rwxr-xr-x root/root 3020 2024-03-22 15:29 ./usr/bin/make_ataqv_pipeline -rwxr-xr-x root/root 36049 2024-03-22 15:29 ./usr/bin/mkarv -rwxr-xr-x root/root 1634 2024-03-22 15:29 ./usr/bin/run_ataqv_example -rwxr-xr-x root/root 1142 2024-03-22 15:29 ./usr/bin/srvarv drwxr-xr-x root/root 0 2024-03-22 15:29 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-22 15:29 ./usr/lib/ataqv/ -rwxr-xr-x root/root 1051968 2024-03-22 15:29 ./usr/lib/ataqv/run_ataqv_tests drwxr-xr-x root/root 0 2024-03-22 15:29 ./usr/share/ drwxr-xr-x root/root 0 2024-03-22 15:29 ./usr/share/ataqv/ drwxr-xr-x root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/ drwxr-xr-x root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/css/ -rw-r--r-- root/root 18865 2023-02-17 16:44 ./usr/share/ataqv/web/css/ataqv.css lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/css/datatables.buttons.min.css -> ../../../javascript/jquery-datatables-extensions/Buttons/css/buttons.dataTables.min.css -rw-r--r-- root/root 3362 2023-02-17 16:44 ./usr/share/ataqv/web/css/datatables.fontawesome.css lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/css/datatables.min.css -> ../../../javascript/jquery-datatables/css/jquery.dataTables.min.css lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/css/font-awesome.min.css -> ../../../fonts-font-awesome/css/font-awesome.min.css lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/css/normalize.css -> ../../../javascript/normalize.css/normalize.css drwxr-xr-x root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/fonts/ lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/fonts/FontAwesome.otf -> ../../../fonts-font-awesome/fonts/FontAwesome.otf lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/fonts/fontawesome-webfont.eot -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.eot lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/fonts/fontawesome-webfont.svg -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.svg lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/fonts/fontawesome-webfont.ttf -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.ttf lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/fonts/fontawesome-webfont.woff -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.woff lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/fonts/fontawesome-webfont.woff2 -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.woff2 -rw-r--r-- root/root 34052 2023-02-17 16:44 ./usr/share/ataqv/web/fonts/sourcesanspro-regular.woff -rw-r--r-- root/root 28724 2023-02-17 16:44 ./usr/share/ataqv/web/fonts/sourcesanspro-regularit.woff -rw-r--r-- root/root 33848 2023-02-17 16:44 ./usr/share/ataqv/web/fonts/sourcesanspro-semibold.woff -rw-r--r-- root/root 28624 2023-02-17 16:44 ./usr/share/ataqv/web/fonts/sourcesanspro-semiboldit.woff -rw-r--r-- root/root 51122 2024-03-22 15:29 ./usr/share/ataqv/web/index.html drwxr-xr-x root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/js/ -rw-r--r-- root/root 69250 2023-02-17 16:44 ./usr/share/ataqv/web/js/ataqv.js lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/js/buttons.colVis.min.js -> ../../../javascript/jquery-datatables-extensions/Buttons/js/buttons.colVis.min.js lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/js/buttons.html5.min.js -> ../../../javascript/jquery-datatables-extensions/Buttons/js/buttons.html5.min.js lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/js/buttons.print.min.js -> ../../../javascript/jquery-datatables-extensions/Buttons/js/buttons.print.min.js lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/js/d3.min.js -> ../../../nodejs/d3/dist/d3.min.js lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/js/dataTables.buttons.min.js -> ../../../javascript/jquery-datatables-extensions/Buttons/js/dataTables.buttons.min.js lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/js/dataTables.responsive.min.js -> ../../../javascript/jquery-datatables-extensions/Responsive/js/dataTables.responsive.min.js lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/js/jquery.dataTables.min.js -> ../../../javascript/jquery-datatables/jquery.dataTables.min.js lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/js/jquery.min.js -> ../../../javascript/jquery/jquery.min.js lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/js/jszip.min.js -> ../../../javascript/jquery-datatables-extensions/JSZip/jszip.min.js lrwxrwxrwx root/root 0 2024-03-22 15:29 ./usr/share/ataqv/web/js/pdfmake.min.js -> ../../../javascript/jquery-datatables-extensions/pdfmake/build/pdfmake.min.js 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./usr/share/man/man1/mkarv.1.gz -rw-r--r-- root/root 379 2024-03-22 15:29 ./usr/share/man/man1/srvarv.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 153188 Build-Time: 115 Distribution: noble-proposed Host Architecture: ppc64el Install-Time: 22 Job: ataqv_1.3.1+ds-2build2.dsc Machine Architecture: ppc64el Package: ataqv Package-Time: 138 Source-Version: 1.3.1+ds-2build2 Space: 153188 Status: successful Version: 1.3.1+ds-2build2 -------------------------------------------------------------------------------- Finished at 2024-03-22T16:28:24Z Build needed 00:02:18, 153188k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27949799 Scanning for processes to kill in build PACKAGEBUILD-27949799