augustus 3.3.1+dfsg-1 source package in Ubuntu


augustus (3.3.1+dfsg-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * debian/upstream/metadata: RRID -> SciCrunch

  [ Sascha Steinbiss ]
  * New upstream release.
  * Fix typo in manpage.
  * Remove obsolete Testsuite entry.
  * Bump Standards-Version.
  * Remove old patches.
  * Update VCS-* links.
  * Bump debhelper requirement to version 11.

 -- Sascha Steinbiss <email address hidden>  Sat, 12 May 2018 08:25:35 +0200

Upload details

Uploaded by:
Debian Med on 2018-05-16
Uploaded to:
Original maintainer:
Debian Med
any all
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Cosmic release on 2018-05-23 universe misc


File Size SHA-256 Checksum
augustus_3.3.1+dfsg-1.dsc 1.9 KiB 892facf2c60d32e50bb596f9c95a5df417237c44fb93e0e5665019625c1b052a
augustus_3.3.1+dfsg.orig.tar.xz 61.3 MiB 8d6cf701989e1311895c7780ef3b2501c26cb747833a8f9f0dd6cbdf8fb71e96
augustus_3.3.1+dfsg-1.debian.tar.xz 15.3 KiB 42c3aba1e2727045268a90a5dda6b823ba8a517e6696b2724ccda31865acf388

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Binary packages built by this source

augustus: gene prediction in eukaryotic genomes

 AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences
 that is based on a generalized hidden Markov model (HMM), a probabilistic
 model of a sequence and its gene structure. After learning gene structures
 from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new
 sequence and annotates it with the regions of identified genes. External hints,
 e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide
 and improve the gene finding process. The result is the set of most likely gene
 structures that comply with all given user constraints, if such gene
 structures exist.
 AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts
 to train custom models using annotated genomes.

augustus-data: data files for AUGUSTUS

 This package contains pre-trained species models and other required
 architecture-independent data files for the AUGUSTUS gene finder. These are
 needed to identify gene structures in these or related organisms.

augustus-dbgsym: debug symbols for augustus
augustus-doc: documentation files for AUGUSTUS

 This package contains documentation for AUGUSTUS: a comprehensive manual-style
 README both for AUGUSTUS in general as well as for its comparative gene
 prediction (cgp) mode, as well as a HTML tutorial.