augustus 3.3.2+dfsg-1 source package in Ubuntu


augustus (3.3.2+dfsg-1) unstable; urgency=medium

  * New upstream release.
  * Exclude new training directory from tarball.
  * Adjust doc-base.
  * Use secure Format URL in d/copyright.
  * Add new build-deps for OpenSSL and libcurl.
  * Set AUGUSTUS_CONFIG_PATH at build time to enable tests.

 -- Sascha Steinbiss <email address hidden>  Sat, 06 Oct 2018 14:24:12 +0200

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Uploaded by:
Debian Med on 2018-10-06
Uploaded to:
Original maintainer:
Debian Med
any all
Medium Urgency

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Series Pocket Published Component Section
Disco release on 2018-11-10 universe misc


File Size SHA-256 Checksum
augustus_3.3.2+dfsg-1.dsc 2.3 KiB 711f892896c617ebade283e872280c85701d802e75618dc68a0a0c2beed55acb
augustus_3.3.2+dfsg.orig.tar.xz 63.0 MiB c0aa6c3e5963ac3a0b26bb6a45ca64c3d09c5fbdce933a1d63cf32f1dfcb1272
augustus_3.3.2+dfsg-1.debian.tar.xz 15.5 KiB cf19436dffd8994b23e64e8fc6771244e3cc96500d176beb0594356af6622eb9

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Binary packages built by this source

augustus: gene prediction in eukaryotic genomes

 AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences
 that is based on a generalized hidden Markov model (HMM), a probabilistic
 model of a sequence and its gene structure. After learning gene structures
 from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new
 sequence and annotates it with the regions of identified genes. External hints,
 e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide
 and improve the gene finding process. The result is the set of most likely gene
 structures that comply with all given user constraints, if such gene
 structures exist.
 AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts
 to train custom models using annotated genomes.

augustus-data: data files for AUGUSTUS

 This package contains pre-trained species models and other required
 architecture-independent data files for the AUGUSTUS gene finder. These are
 needed to identify gene structures in these or related organisms.

augustus-dbgsym: debug symbols for augustus
augustus-doc: documentation files for AUGUSTUS

 This package contains documentation for AUGUSTUS: a comprehensive manual-style
 README both for AUGUSTUS in general as well as for its comparative gene
 prediction (cgp) mode, as well as a HTML tutorial.