https://launchpad.net/ubuntu/+source/augustus/3.4.0+dfsg2-2/+build/20761513 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-012 4.15.0-128-generic #131-Ubuntu SMP Wed Dec 9 06:54:14 UTC 2020 ppc64le Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 3 Jan 23:26:40 ntpdate[1930]: adjust time server 10.211.37.1 offset 0.001758 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20761513 --image-type chroot /home/buildd/filecache-default/562b8b0d733db483afe9600af35c69ac54075a74 Creating target for build PACKAGEBUILD-20761513 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20761513 Starting target for build PACKAGEBUILD-20761513 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20761513 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20761513 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20761513 Updating target for build PACKAGEBUILD-20761513 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main ppc64el Packages [1346 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el Packages [12.6 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5389 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el Packages [150 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [60.1 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el Packages [741 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [340 kB] Fetched 21.7 MB in 5s (4229 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libisl23 libperl5.32 libxxhash0 perl-modules-5.32 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils coreutils cpp-10 dash dpkg dpkg-dev fakeroot g++-10 gcc-10 gcc-10-base grep init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libgssapi-krb5-2 libidn2-0 libip4tc2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 liblz4-1 libmount1 libmpc3 libncurses6 libncursesw6 libnpth0 libp11-kit0 libpcre2-8-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login mount ncurses-base ncurses-bin openssl passwd perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata util-linux 105 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 80.3 MB of archives. After this operation, 56.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcrypt-dev ppc64el 1:4.4.17-1ubuntu1 [131 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libc6-dev ppc64el 2.32-0ubuntu6 [2132 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libc-dev-bin ppc64el 2.32-0ubuntu6 [31.5 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcrypt1 ppc64el 1:4.4.17-1ubuntu1 [99.8 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el linux-libc-dev ppc64el 5.8.0-34.37+21.04.1 [1134 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libtirpc-common all 1.3.1-1 [7452 B] Get:7 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libk5crypto3 ppc64el 1.17-10ubuntu1 [105 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgssapi-krb5-2 ppc64el 1.17-10ubuntu1 [135 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libkrb5-3 ppc64el 1.17-10ubuntu1 [375 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libkrb5support0 ppc64el 1.17-10ubuntu1 [34.8 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libssl1.1 ppc64el 1.1.1f-1ubuntu5 [1363 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libtirpc-dev ppc64el 1.3.1-1 [208 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libtirpc3 ppc64el 1.3.1-1 [88.9 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libisl23 ppc64el 0.23-1 [713 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libcc1-0 ppc64el 10.2.1-2ubuntu3 [42.0 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libctf0 ppc64el 2.35.50.20201218-1ubuntu3 [85.5 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libctf-nobfd0 ppc64el 2.35.50.20201218-1ubuntu3 [85.5 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.35.50.20201218-1ubuntu3 [1838 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libbinutils ppc64el 2.35.50.20201218-1ubuntu3 [534 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el binutils-common ppc64el 2.35.50.20201218-1ubuntu3 [216 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el binutils ppc64el 2.35.50.20201218-1ubuntu3 [3380 B] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el gcc-10-base ppc64el 10.2.1-2ubuntu3 [19.4 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libgcc-s1 ppc64el 10.2.1-2ubuntu3 [30.1 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libgomp1 ppc64el 10.2.1-2ubuntu3 [109 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libitm1 ppc64el 10.2.1-2ubuntu3 [28.5 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libatomic1 ppc64el 10.2.1-2ubuntu3 [9984 B] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libasan6 ppc64el 10.2.1-2ubuntu3 [2107 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el liblsan0 ppc64el 10.2.1-2ubuntu3 [848 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libtsan0 ppc64el 10.2.1-2ubuntu3 [2031 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libubsan1 ppc64el 10.2.1-2ubuntu3 [800 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libquadmath0 ppc64el 10.2.1-2ubuntu3 [149 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el g++-10 ppc64el 10.2.1-2ubuntu3 [8185 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libstdc++-10-dev ppc64el 10.2.1-2ubuntu3 [1793 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libgcc-10-dev ppc64el 10.2.1-2ubuntu3 [1246 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el gcc-10 ppc64el 10.2.1-2ubuntu3 [14.5 MB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el cpp-10 ppc64el 10.2.1-2ubuntu3 [7072 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libstdc++6 ppc64el 10.2.1-2ubuntu3 [540 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmpc3 ppc64el 1.2.0-1 [47.1 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libzstd1 ppc64el 1.4.8+dfsg-1 [327 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libc6 ppc64el 2.32-0ubuntu6 [2680 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main ppc64el base-files ppc64el 11ubuntu16 [60.7 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main ppc64el bash ppc64el 5.1-1ubuntu1 [748 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main ppc64el bsdutils ppc64el 1:2.36.1-1ubuntu2 [91.9 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main ppc64el coreutils ppc64el 8.32-4ubuntu2 [1411 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main ppc64el tar ppc64el 1.32+dfsg-1 [317 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dpkg ppc64el 1.20.5ubuntu3 [1199 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dash ppc64el 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 [101 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main ppc64el grep ppc64el 3.6-1 [160 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main ppc64el login ppc64el 1:4.8.1-1ubuntu7 [223 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libncurses6 ppc64el 6.2+20201114-2 [122 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libncursesw6 ppc64el 6.2+20201114-2 [153 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtinfo6 ppc64el 6.2+20201114-2 [104 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ncurses-bin ppc64el 6.2+20201114-2 [180 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el perl-modules-5.32 all 5.32.0-6 [2754 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libperl5.32 ppc64el 5.32.0-6 [4020 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el perl ppc64el 5.32.0-6 [225 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el perl-base ppc64el 5.32.0-6 [1547 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main ppc64el util-linux ppc64el 2.36.1-1ubuntu2 [1118 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libdebconfclient0 ppc64el 0.255ubuntu1 [6148 B] Get:60 http://ftpmaster.internal/ubuntu hirsute/main ppc64el base-passwd ppc64el 3.5.48 [49.6 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el init-system-helpers all 1.60 [37.8 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libc-bin ppc64el 2.32-0ubuntu6 [647 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ncurses-base all 6.2+20201114-2 [18.4 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main ppc64el sysvinit-utils ppc64el 2.96-5ubuntu1 [22.8 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxxhash0 ppc64el 0.8.0-1 [30.5 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgcrypt20 ppc64el 1.8.7-2ubuntu1 [444 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblz4-1 ppc64el 1.9.3-0ubuntu1 [70.0 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el systemd-sysv ppc64el 247.1-4ubuntu1 [10.3 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libaudit-common all 1:2.8.5-3ubuntu3 [4048 B] Get:70 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcap-ng0 ppc64el 0.7.9-2.2build1 [11.7 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libaudit1 ppc64el 1:2.8.5-3ubuntu3 [42.5 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpcre2-8-0 ppc64el 10.35-2ubuntu1 [204 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libselinux1 ppc64el 3.1-2build2 [81.5 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsemanage-common all 3.1-1build2 [10.0 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsemanage1 ppc64el 3.1-1build2 [97.0 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main ppc64el passwd ppc64el 1:4.8.1-1ubuntu7 [804 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el adduser all 3.118ubuntu4 [163 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el systemd-timesyncd ppc64el 247.1-4ubuntu1 [28.6 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libapparmor1 ppc64el 3.0.0-0ubuntu5 [39.6 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libblkid1 ppc64el 2.36.1-1ubuntu2 [151 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libudev1 ppc64el 247.1-4ubuntu1 [82.5 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.167-1ubuntu4 [157 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libuuid1 ppc64el 2.36.1-1ubuntu2 [23.1 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcryptsetup12 ppc64el 2:2.3.4-1ubuntu1 [228 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libip4tc2 ppc64el 1.8.5-3ubuntu4 [22.0 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libseccomp2 ppc64el 2.4.3-1ubuntu6 [47.7 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main ppc64el mount ppc64el 2.36.1-1ubuntu2 [128 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el systemd ppc64el 247.1-4ubuntu1 [4205 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libsystemd0 ppc64el 247.1-4ubuntu1 [318 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libapt-pkg6.0 ppc64el 2.1.15 [932 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el apt ppc64el 2.1.15 [1329 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el init ppc64el 1.60 [6040 B] Get:93 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libacl1 ppc64el 2.2.53-9 [19.1 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libattr1 ppc64el 1:2.4.48-6 [13.8 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmount1 ppc64el 2.36.1-1ubuntu2 [166 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsmartcols1 ppc64el 2.36.1-1ubuntu2 [107 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libidn2-0 ppc64el 2.3.0-4 [55.3 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libp11-kit0 ppc64el 0.23.22-1 [203 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcap2 ppc64el 1:2.44-1 [19.8 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main ppc64el readline-common all 8.1-1 [54.1 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libreadline8 ppc64el 8.1-1 [151 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsqlite3-0 ppc64el 3.34.0-1 [628 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el openssl ppc64el 1.1.1f-1ubuntu5 [621 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/main ppc64el tzdata all 2020d-1ubuntu1 [293 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dpkg-dev all 1.20.5ubuntu3 [758 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libdpkg-perl all 1.20.5ubuntu3 [232 kB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libfakeroot ppc64el 1.25.3-1.1 [28.6 kB] Get:108 http://ftpmaster.internal/ubuntu hirsute/main ppc64el fakeroot ppc64el 1.25.3-1.1 [66.4 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libnpth0 ppc64el 1.6-3 [8640 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 80.3 MB in 4s (21.8 MB/s) (Reading database ... 12922 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.17-1ubuntu1_ppc64el.deb ... Unpacking libcrypt-dev:ppc64el (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../libc6-dev_2.32-0ubuntu6_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.32-0ubuntu6_ppc64el.deb ... Unpacking libc-dev-bin (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libcrypt1_1%3a4.4.17-1ubuntu1_ppc64el.deb ... Unpacking libcrypt1:ppc64el (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:ppc64el (1:4.4.17-1ubuntu1) ... (Reading database ... 12921 files and directories currently installed.) Preparing to unpack .../00-linux-libc-dev_5.8.0-34.37+21.04.1_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (5.8.0-34.37+21.04.1) over (5.8.0-25.26) ... Preparing to unpack .../01-libtirpc-common_1.3.1-1_all.deb ... Unpacking libtirpc-common (1.3.1-1) over (1.2.6-1build1) ... Preparing to unpack .../02-libk5crypto3_1.17-10ubuntu1_ppc64el.deb ... Unpacking libk5crypto3:ppc64el (1.17-10ubuntu1) over (1.17-10) ... Preparing to unpack .../03-libgssapi-krb5-2_1.17-10ubuntu1_ppc64el.deb ... Unpacking libgssapi-krb5-2:ppc64el (1.17-10ubuntu1) over (1.17-10) ... Preparing to unpack .../04-libkrb5-3_1.17-10ubuntu1_ppc64el.deb ... Unpacking libkrb5-3:ppc64el (1.17-10ubuntu1) over (1.17-10) ... Preparing to unpack .../05-libkrb5support0_1.17-10ubuntu1_ppc64el.deb ... Unpacking libkrb5support0:ppc64el (1.17-10ubuntu1) over (1.17-10) ... Preparing to unpack .../06-libssl1.1_1.1.1f-1ubuntu5_ppc64el.deb ... Unpacking libssl1.1:ppc64el (1.1.1f-1ubuntu5) over (1.1.1f-1ubuntu4) ... Preparing to unpack .../07-libtirpc-dev_1.3.1-1_ppc64el.deb ... Unpacking libtirpc-dev:ppc64el (1.3.1-1) over (1.2.6-1build1) ... Preparing to unpack .../08-libtirpc3_1.3.1-1_ppc64el.deb ... Unpacking libtirpc3:ppc64el (1.3.1-1) over (1.2.6-1build1) ... Selecting previously unselected package libisl23:ppc64el. Preparing to unpack .../09-libisl23_0.23-1_ppc64el.deb ... Unpacking libisl23:ppc64el (0.23-1) ... Preparing to unpack .../10-libcc1-0_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking libcc1-0:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../11-libctf0_2.35.50.20201218-1ubuntu3_ppc64el.deb ... Unpacking libctf0:ppc64el (2.35.50.20201218-1ubuntu3) over (2.35.1-1ubuntu1) ... Preparing to unpack .../12-libctf-nobfd0_2.35.50.20201218-1ubuntu3_ppc64el.deb ... Unpacking libctf-nobfd0:ppc64el (2.35.50.20201218-1ubuntu3) over (2.35.1-1ubuntu1) ... Preparing to unpack .../13-binutils-powerpc64le-linux-gnu_2.35.50.20201218-1ubuntu3_ppc64el.deb ... Unpacking binutils-powerpc64le-linux-gnu (2.35.50.20201218-1ubuntu3) over (2.35.1-1ubuntu1) ... Preparing to unpack .../14-libbinutils_2.35.50.20201218-1ubuntu3_ppc64el.deb ... Unpacking libbinutils:ppc64el (2.35.50.20201218-1ubuntu3) over (2.35.1-1ubuntu1) ... Preparing to unpack .../15-binutils-common_2.35.50.20201218-1ubuntu3_ppc64el.deb ... Unpacking binutils-common:ppc64el (2.35.50.20201218-1ubuntu3) over (2.35.1-1ubuntu1) ... Preparing to unpack .../16-binutils_2.35.50.20201218-1ubuntu3_ppc64el.deb ... Unpacking binutils (2.35.50.20201218-1ubuntu3) over (2.35.1-1ubuntu1) ... Preparing to unpack .../17-gcc-10-base_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking gcc-10-base:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Setting up gcc-10-base:ppc64el (10.2.1-2ubuntu3) ... (Reading database ... 12929 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking libgcc-s1:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Setting up libgcc-s1:ppc64el (10.2.1-2ubuntu3) ... (Reading database ... 12929 files and directories currently installed.) Preparing to unpack .../00-libgomp1_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking libgomp1:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../01-libitm1_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking libitm1:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../02-libatomic1_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking libatomic1:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../03-libasan6_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking libasan6:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../04-liblsan0_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking liblsan0:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../05-libtsan0_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking libtsan0:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../06-libubsan1_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking libubsan1:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../07-libquadmath0_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking libquadmath0:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../08-g++-10_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking g++-10 (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../09-libstdc++-10-dev_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking libstdc++-10-dev:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../10-libgcc-10-dev_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking libgcc-10-dev:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../11-gcc-10_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking gcc-10 (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../12-cpp-10_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking cpp-10 (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Preparing to unpack .../13-libstdc++6_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking libstdc++6:ppc64el (10.2.1-2ubuntu3) over (10.2.0-13ubuntu1) ... Setting up libstdc++6:ppc64el (10.2.1-2ubuntu3) ... (Reading database ... 12929 files and directories currently installed.) Preparing to unpack .../libmpc3_1.2.0-1_ppc64el.deb ... Unpacking libmpc3:ppc64el (1.2.0-1) over (1.2.0~rc1-1) ... Preparing to unpack .../libzstd1_1.4.8+dfsg-1_ppc64el.deb ... Unpacking libzstd1:ppc64el (1.4.8+dfsg-1) over (1.4.5+dfsg-4) ... Setting up libzstd1:ppc64el (1.4.8+dfsg-1) ... (Reading database ... 12929 files and directories currently installed.) Preparing to unpack .../libc6_2.32-0ubuntu6_ppc64el.deb ... Unpacking libc6:ppc64el (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Setting up libc6:ppc64el (2.32-0ubuntu6) ... (Reading database ... 12929 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu16_ppc64el.deb ... Unpacking base-files (11ubuntu16) over (11ubuntu14) ... Setting up base-files (11ubuntu16) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12929 files and directories currently installed.) Preparing to unpack .../bash_5.1-1ubuntu1_ppc64el.deb ... Unpacking bash (5.1-1ubuntu1) over (5.0-6ubuntu2) ... Setting up bash (5.1-1ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12929 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.36.1-1ubuntu2_ppc64el.deb ... Unpacking bsdutils (1:2.36.1-1ubuntu2) over (1:2.36-3ubuntu1) ... Setting up bsdutils (1:2.36.1-1ubuntu2) ... (Reading database ... 12929 files and directories currently installed.) Preparing to unpack .../coreutils_8.32-4ubuntu2_ppc64el.deb ... Unpacking coreutils (8.32-4ubuntu2) over (8.32-3ubuntu1) ... Setting up coreutils (8.32-4ubuntu2) ... (Reading database ... 12929 files and directories currently installed.) Preparing to unpack .../tar_1.32+dfsg-1_ppc64el.deb ... Unpacking tar (1.32+dfsg-1) over (1.30+dfsg-7) ... Setting up tar (1.32+dfsg-1) ... (Reading database ... 12929 files and directories currently installed.) Preparing to unpack .../dpkg_1.20.5ubuntu3_ppc64el.deb ... Unpacking dpkg (1.20.5ubuntu3) over (1.20.5ubuntu2) ... Setting up dpkg (1.20.5ubuntu3) ... (Reading database ... 12929 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1_ppc64el.deb ... Unpacking dash (0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1) over (0.5.10.2-7) ... Setting up dash (0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1) ... (Reading database ... 12929 files and directories currently installed.) Preparing to unpack .../grep_3.6-1_ppc64el.deb ... Unpacking grep (3.6-1) over (3.4-1) ... Setting up grep (3.6-1) ... (Reading database ... 12930 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8.1-1ubuntu7_ppc64el.deb ... Unpacking login (1:4.8.1-1ubuntu7) over (1:4.8.1-1ubuntu6) ... Setting up login (1:4.8.1-1ubuntu7) ... (Reading database ... 12930 files and directories currently installed.) Preparing to unpack .../libncurses6_6.2+20201114-2_ppc64el.deb ... Unpacking libncurses6:ppc64el (6.2+20201114-2) over (6.2-1) ... Preparing to unpack .../libncursesw6_6.2+20201114-2_ppc64el.deb ... Unpacking libncursesw6:ppc64el (6.2+20201114-2) over (6.2-1) ... Preparing to unpack .../libtinfo6_6.2+20201114-2_ppc64el.deb ... Unpacking libtinfo6:ppc64el (6.2+20201114-2) over (6.2-1) ... Setting up libtinfo6:ppc64el (6.2+20201114-2) ... (Reading database ... 12930 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.2+20201114-2_ppc64el.deb ... Unpacking ncurses-bin (6.2+20201114-2) over (6.2-1) ... Setting up ncurses-bin (6.2+20201114-2) ... (Reading database ... 12930 files and directories currently installed.) Preparing to unpack .../perl_5.32.0-6_ppc64el.deb ... Unpacking perl (5.32.0-6) over (5.30.3-4) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../perl-modules-5.32_5.32.0-6_all.deb ... Unpacking perl-modules-5.32 (5.32.0-6) ... Selecting previously unselected package libperl5.32:ppc64el. Preparing to unpack .../libperl5.32_5.32.0-6_ppc64el.deb ... Unpacking libperl5.32:ppc64el (5.32.0-6) ... Preparing to unpack .../perl-base_5.32.0-6_ppc64el.deb ... Unpacking perl-base (5.32.0-6) over (5.30.3-4) ... Setting up perl-base (5.32.0-6) ... (Reading database ... 14852 files and directories currently installed.) Preparing to unpack .../util-linux_2.36.1-1ubuntu2_ppc64el.deb ... Unpacking util-linux (2.36.1-1ubuntu2) over (2.36-3ubuntu1) ... Setting up util-linux (2.36.1-1ubuntu2) ... (Reading database ... 14853 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.255ubuntu1_ppc64el.deb ... Unpacking libdebconfclient0:ppc64el (0.255ubuntu1) over (0.252ubuntu1) ... Setting up libdebconfclient0:ppc64el (0.255ubuntu1) ... (Reading database ... 14853 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.48_ppc64el.deb ... Unpacking base-passwd (3.5.48) over (3.5.47) ... Setting up base-passwd (3.5.48) ... Changing home-directory of irc from /var/run/ircd to /run/ircd 1 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 14853 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.60_all.deb ... Unpacking init-system-helpers (1.60) over (1.58) ... Setting up init-system-helpers (1.60) ... (Reading database ... 14852 files and directories currently installed.) Preparing to unpack .../libc-bin_2.32-0ubuntu6_ppc64el.deb ... Unpacking libc-bin (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Setting up libc-bin (2.32-0ubuntu6) ... (Reading database ... 14852 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2+20201114-2_all.deb ... Unpacking ncurses-base (6.2+20201114-2) over (6.2-1) ... Setting up ncurses-base (6.2+20201114-2) ... (Reading database ... 14852 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-5ubuntu1_ppc64el.deb ... Unpacking sysvinit-utils (2.96-5ubuntu1) over (2.96-3ubuntu1) ... Setting up sysvinit-utils (2.96-5ubuntu1) ... Selecting previously unselected package libxxhash0:ppc64el. (Reading database ... 14852 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.0-1_ppc64el.deb ... Unpacking libxxhash0:ppc64el (0.8.0-1) ... Setting up libxxhash0:ppc64el (0.8.0-1) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.7-2ubuntu1_ppc64el.deb ... Unpacking libgcrypt20:ppc64el (1.8.7-2ubuntu1) over (1.8.5-5ubuntu2) ... Setting up libgcrypt20:ppc64el (1.8.7-2ubuntu1) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.3-0ubuntu1_ppc64el.deb ... Unpacking liblz4-1:ppc64el (1.9.3-0ubuntu1) over (1.9.2-2) ... Setting up liblz4-1:ppc64el (1.9.3-0ubuntu1) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../systemd-sysv_247.1-4ubuntu1_ppc64el.deb ... Unpacking systemd-sysv (247.1-4ubuntu1) over (246.6-1ubuntu1) ... Preparing to unpack .../libaudit-common_1%3a2.8.5-3ubuntu3_all.deb ... Unpacking libaudit-common (1:2.8.5-3ubuntu3) over (1:2.8.5-3ubuntu1) ... Setting up libaudit-common (1:2.8.5-3ubuntu3) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-2.2build1_ppc64el.deb ... Unpacking libcap-ng0:ppc64el (0.7.9-2.2build1) over (0.7.9-2.2) ... Setting up libcap-ng0:ppc64el (0.7.9-2.2build1) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.5-3ubuntu3_ppc64el.deb ... Unpacking libaudit1:ppc64el (1:2.8.5-3ubuntu3) over (1:2.8.5-3ubuntu1) ... Setting up libaudit1:ppc64el (1:2.8.5-3ubuntu3) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.35-2ubuntu1_ppc64el.deb ... Unpacking libpcre2-8-0:ppc64el (10.35-2ubuntu1) over (10.34-7) ... Setting up libpcre2-8-0:ppc64el (10.35-2ubuntu1) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../libselinux1_3.1-2build2_ppc64el.deb ... Unpacking libselinux1:ppc64el (3.1-2build2) over (3.1-2) ... Setting up libselinux1:ppc64el (3.1-2build2) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.1-1build2_all.deb ... Unpacking libsemanage-common (3.1-1build2) over (3.1-1) ... Setting up libsemanage-common (3.1-1build2) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../libsemanage1_3.1-1build2_ppc64el.deb ... Unpacking libsemanage1:ppc64el (3.1-1build2) over (3.1-1) ... Setting up libsemanage1:ppc64el (3.1-1build2) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.8.1-1ubuntu7_ppc64el.deb ... Unpacking passwd (1:4.8.1-1ubuntu7) over (1:4.8.1-1ubuntu6) ... Setting up passwd (1:4.8.1-1ubuntu7) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../adduser_3.118ubuntu4_all.deb ... Unpacking adduser (3.118ubuntu4) over (3.118ubuntu2) ... Setting up adduser (3.118ubuntu4) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../systemd-timesyncd_247.1-4ubuntu1_ppc64el.deb ... Unpacking systemd-timesyncd (247.1-4ubuntu1) over (246.6-1ubuntu1) ... Preparing to unpack .../libapparmor1_3.0.0-0ubuntu5_ppc64el.deb ... Unpacking libapparmor1:ppc64el (3.0.0-0ubuntu5) over (3.0.0-0ubuntu1) ... Preparing to unpack .../libblkid1_2.36.1-1ubuntu2_ppc64el.deb ... Unpacking libblkid1:ppc64el (2.36.1-1ubuntu2) over (2.36-3ubuntu1) ... Setting up libblkid1:ppc64el (2.36.1-1ubuntu2) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../libudev1_247.1-4ubuntu1_ppc64el.deb ... Unpacking libudev1:ppc64el (247.1-4ubuntu1) over (246.6-1ubuntu1) ... Setting up libudev1:ppc64el (247.1-4ubuntu1) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.167-1ubuntu4_ppc64el.deb ... Unpacking libdevmapper1.02.1:ppc64el (2:1.02.167-1ubuntu4) over (2:1.02.167-1ubuntu3) ... Preparing to unpack .../libuuid1_2.36.1-1ubuntu2_ppc64el.deb ... Unpacking libuuid1:ppc64el (2.36.1-1ubuntu2) over (2.36-3ubuntu1) ... Setting up libuuid1:ppc64el (2.36.1-1ubuntu2) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.3.4-1ubuntu1_ppc64el.deb ... Unpacking libcryptsetup12:ppc64el (2:2.3.4-1ubuntu1) over (2:2.3.3-1ubuntu6) ... Preparing to unpack .../libip4tc2_1.8.5-3ubuntu4_ppc64el.deb ... Unpacking libip4tc2:ppc64el (1.8.5-3ubuntu4) over (1.8.5-3ubuntu1) ... Preparing to unpack .../libseccomp2_2.4.3-1ubuntu6_ppc64el.deb ... Unpacking libseccomp2:ppc64el (2.4.3-1ubuntu6) over (2.4.3-1ubuntu4) ... Setting up libseccomp2:ppc64el (2.4.3-1ubuntu6) ... (Reading database ... 14857 files and directories currently installed.) Preparing to unpack .../mount_2.36.1-1ubuntu2_ppc64el.deb ... Unpacking mount (2.36.1-1ubuntu2) over (2.36-3ubuntu1) ... Preparing to unpack .../systemd_247.1-4ubuntu1_ppc64el.deb ... Unpacking systemd (247.1-4ubuntu1) over (246.6-1ubuntu1) ... Preparing to unpack .../libsystemd0_247.1-4ubuntu1_ppc64el.deb ... Unpacking libsystemd0:ppc64el (247.1-4ubuntu1) over (246.6-1ubuntu1) ... Setting up libsystemd0:ppc64el (247.1-4ubuntu1) ... (Reading database ... 14865 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.1.15_ppc64el.deb ... Unpacking libapt-pkg6.0:ppc64el (2.1.15) over (2.1.10) ... Setting up libapt-pkg6.0:ppc64el (2.1.15) ... (Reading database ... 14865 files and directories currently installed.) Preparing to unpack .../apt_2.1.15_ppc64el.deb ... Unpacking apt (2.1.15) over (2.1.10) ... Setting up apt (2.1.15) ... Setting up libapparmor1:ppc64el (3.0.0-0ubuntu5) ... Setting up libdevmapper1.02.1:ppc64el (2:1.02.167-1ubuntu4) ... Setting up libssl1.1:ppc64el (1.1.1f-1ubuntu5) ... Setting up libcryptsetup12:ppc64el (2:2.3.4-1ubuntu1) ... Setting up libip4tc2:ppc64el (1.8.5-3ubuntu4) ... Setting up mount (2.36.1-1ubuntu2) ... Setting up systemd-timesyncd (247.1-4ubuntu1) ... Setting up systemd (247.1-4ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Initializing machine ID from random generator. Removing obsolete conffile /etc/pam.d/systemd-user ... Setting up systemd-sysv (247.1-4ubuntu1) ... (Reading database ... 14869 files and directories currently installed.) Preparing to unpack .../archives/init_1.60_ppc64el.deb ... Unpacking init (1.60) over (1.58) ... Preparing to unpack .../libacl1_2.2.53-9_ppc64el.deb ... Unpacking libacl1:ppc64el (2.2.53-9) over (2.2.53-8) ... Setting up libacl1:ppc64el (2.2.53-9) ... (Reading database ... 14869 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.4.48-6_ppc64el.deb ... Unpacking libattr1:ppc64el (1:2.4.48-6) over (1:2.4.48-5) ... Setting up libattr1:ppc64el (1:2.4.48-6) ... (Reading database ... 14869 files and directories currently installed.) Preparing to unpack .../libmount1_2.36.1-1ubuntu2_ppc64el.deb ... Unpacking libmount1:ppc64el (2.36.1-1ubuntu2) over (2.36-3ubuntu1) ... Setting up libmount1:ppc64el (2.36.1-1ubuntu2) ... (Reading database ... 14869 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.36.1-1ubuntu2_ppc64el.deb ... Unpacking libsmartcols1:ppc64el (2.36.1-1ubuntu2) over (2.36-3ubuntu1) ... Setting up libsmartcols1:ppc64el (2.36.1-1ubuntu2) ... (Reading database ... 14869 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.0-4_ppc64el.deb ... Unpacking libidn2-0:ppc64el (2.3.0-4) over (2.3.0-1) ... Setting up libidn2-0:ppc64el (2.3.0-4) ... (Reading database ... 14869 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.22-1_ppc64el.deb ... Unpacking libp11-kit0:ppc64el (0.23.22-1) over (0.23.21-2build1) ... Setting up libp11-kit0:ppc64el (0.23.22-1) ... (Reading database ... 14869 files and directories currently installed.) Preparing to unpack .../00-libcap2_1%3a2.44-1_ppc64el.deb ... Unpacking libcap2:ppc64el (1:2.44-1) over (1:2.43-1) ... Preparing to unpack .../01-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) over (8.0-4) ... Preparing to unpack .../02-libreadline8_8.1-1_ppc64el.deb ... Unpacking libreadline8:ppc64el (8.1-1) over (8.0-4) ... Preparing to unpack .../03-libsqlite3-0_3.34.0-1_ppc64el.deb ... Unpacking libsqlite3-0:ppc64el (3.34.0-1) over (3.33.0-1) ... Preparing to unpack .../04-openssl_1.1.1f-1ubuntu5_ppc64el.deb ... Unpacking openssl (1.1.1f-1ubuntu5) over (1.1.1f-1ubuntu4) ... Preparing to unpack .../05-tzdata_2020d-1ubuntu1_all.deb ... Unpacking tzdata (2020d-1ubuntu1) over (2020b-1ubuntu1) ... Preparing to unpack .../06-dpkg-dev_1.20.5ubuntu3_all.deb ... Unpacking dpkg-dev (1.20.5ubuntu3) over (1.20.5ubuntu2) ... Preparing to unpack .../07-libdpkg-perl_1.20.5ubuntu3_all.deb ... Unpacking libdpkg-perl (1.20.5ubuntu3) over (1.20.5ubuntu2) ... Preparing to unpack .../08-libfakeroot_1.25.3-1.1_ppc64el.deb ... Unpacking libfakeroot:ppc64el (1.25.3-1.1) over (1.25.2-1) ... Preparing to unpack .../09-fakeroot_1.25.3-1.1_ppc64el.deb ... Unpacking fakeroot (1.25.3-1.1) over (1.25.2-1) ... Preparing to unpack .../10-libnpth0_1.6-3_ppc64el.deb ... Unpacking libnpth0:ppc64el (1.6-3) over (1.6-2) ... Setting up init (1.60) ... Setting up libtirpc-common (1.3.1-1) ... Setting up perl-modules-5.32 (5.32.0-6) ... Setting up libsqlite3-0:ppc64el (3.34.0-1) ... Setting up binutils-common:ppc64el (2.35.50.20201218-1ubuntu3) ... Setting up linux-libc-dev:ppc64el (5.8.0-34.37+21.04.1) ... Setting up libctf-nobfd0:ppc64el (2.35.50.20201218-1ubuntu3) ... Setting up libnpth0:ppc64el (1.6-3) ... Setting up libgomp1:ppc64el (10.2.1-2ubuntu3) ... Setting up libcap2:ppc64el (1:2.44-1) ... Setting up libfakeroot:ppc64el (1.25.3-1.1) ... Setting up libasan6:ppc64el (10.2.1-2ubuntu3) ... Setting up libkrb5support0:ppc64el (1.17-10ubuntu1) ... Setting up tzdata (2020d-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Jan 3 23:27:14 UTC 2021. Universal Time is now: Sun Jan 3 23:27:14 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1.1) ... Setting up libncurses6:ppc64el (6.2+20201114-2) ... Setting up libquadmath0:ppc64el (10.2.1-2ubuntu3) ... Setting up libmpc3:ppc64el (1.2.0-1) ... Setting up libatomic1:ppc64el (10.2.1-2ubuntu3) ... Setting up libncursesw6:ppc64el (6.2+20201114-2) ... Setting up libk5crypto3:ppc64el (1.17-10ubuntu1) ... Setting up libperl5.32:ppc64el (5.32.0-6) ... Setting up libubsan1:ppc64el (10.2.1-2ubuntu3) ... Setting up libcrypt-dev:ppc64el (1:4.4.17-1ubuntu1) ... Setting up libkrb5-3:ppc64el (1.17-10ubuntu1) ... Setting up libbinutils:ppc64el (2.35.50.20201218-1ubuntu3) ... Setting up libisl23:ppc64el (0.23-1) ... Setting up libc-dev-bin (2.32-0ubuntu6) ... Setting up openssl (1.1.1f-1ubuntu5) ... Setting up readline-common (8.1-1) ... Setting up libcc1-0:ppc64el (10.2.1-2ubuntu3) ... Setting up liblsan0:ppc64el (10.2.1-2ubuntu3) ... Setting up cpp-10 (10.2.1-2ubuntu3) ... Setting up libitm1:ppc64el (10.2.1-2ubuntu3) ... Setting up libtsan0:ppc64el (10.2.1-2ubuntu3) ... Setting up libctf0:ppc64el (2.35.50.20201218-1ubuntu3) ... Setting up libgcc-10-dev:ppc64el (10.2.1-2ubuntu3) ... Setting up libreadline8:ppc64el (8.1-1) ... Setting up perl (5.32.0-6) ... Setting up libgssapi-krb5-2:ppc64el (1.17-10ubuntu1) ... Setting up libdpkg-perl (1.20.5ubuntu3) ... Setting up binutils-powerpc64le-linux-gnu (2.35.50.20201218-1ubuntu3) ... Setting up libtirpc3:ppc64el (1.3.1-1) ... Setting up binutils (2.35.50.20201218-1ubuntu3) ... Setting up dpkg-dev (1.20.5ubuntu3) ... Setting up libtirpc-dev:ppc64el (1.3.1-1) ... Setting up gcc-10 (10.2.1-2ubuntu3) ... Setting up libc6-dev:ppc64el (2.32-0ubuntu6) ... Setting up libstdc++-10-dev:ppc64el (10.2.1-2ubuntu3) ... Setting up g++-10 (10.2.1-2ubuntu3) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20761513 ppc64el hirsute-proposed -c chroot:build-PACKAGEBUILD-20761513 --arch=ppc64el --dist=hirsute-proposed --nolog augustus_3.4.0+dfsg2-2.dsc Initiating build PACKAGEBUILD-20761513 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-128-generic #131-Ubuntu SMP Wed Dec 9 06:54:14 UTC 2020 ppc64le sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-ppc64el-012.buildd +==============================================================================+ | augustus 3.4.0+dfsg2-2 (ppc64el) Sun, 03 Jan 2021 23:27:15 +0000 | +==============================================================================+ Package: augustus Version: 3.4.0+dfsg2-2 Source Version: 3.4.0+dfsg2-2 Distribution: hirsute-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20761513/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- augustus_3.4.0+dfsg2-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/augustus-a3Fniw/augustus-3.4.0+dfsg2' with '<>' I: NOTICE: Log filtering will replace 'build/augustus-a3Fniw' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-sdXt2j/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-sdXt2j/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sdXt2j/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-sdXt2j/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sdXt2j/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-sdXt2j/apt_archive ./ Packages [434 B] Fetched 1740 B in 0s (97.0 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-sdXt2j/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (74.3 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14869 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libsqlite3-dev, libboost-iostreams-dev, zlib1g-dev, libgsl-dev, liblpsolve55-dev, libbamtools-dev, libbz2-dev, lzma-dev, libhts-dev, libncurses5-dev, libboost-serialization-dev, libssl-dev, libmysql++-dev, asciidoctor, python3, samtools Filtered Build-Depends: debhelper-compat (= 13), libsqlite3-dev, libboost-iostreams-dev, zlib1g-dev, libgsl-dev, liblpsolve55-dev, libbamtools-dev, libbz2-dev, lzma-dev, libhts-dev, libncurses5-dev, libboost-serialization-dev, libssl-dev, libmysql++-dev, asciidoctor, python3, samtools dpkg-deb: building package 'sbuild-build-depends-augustus-dummy' in '/<>/resolver-sdXt2j/apt_archive/sbuild-build-depends-augustus-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-augustus-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-sdXt2j/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sdXt2j/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-sdXt2j/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sdXt2j/apt_archive ./ Sources [600 B] Get:5 copy:/<>/resolver-sdXt2j/apt_archive ./ Packages [686 B] Fetched 2249 B in 0s (111 kB/s) Reading package lists... Reading package lists... Install augustus build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdextrautils debhelper default-libmysqlclient-dev dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libamd2 libarchive-zip-perl libasn1-8-heimdal libbamtools-dev libbamtools2.5.1 libblas-dev libblas3 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization-dev libboost-serialization1.74-dev libboost-serialization1.74.0 libboost1.74-dev libbrotli1 libbtf1 libbz2-dev libcamd2 libccolamd2 libcholmod3 libcolamd2 libcurl3-gnutls libcurl4-gnutls-dev libcxsparse3 libdebhelper-perl libdeflate-dev libdeflate0 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgraphblas3 libgsl-dev libgsl25 libgslcblas0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu-dev libicu67 libklu1 libkrb5-26-heimdal liblapack-dev liblapack3 libldap-2.4-2 libldl2 liblpsolve55-dev liblzma-dev libmagic-mgc libmagic1 libmetis5 libmongoose2 libmysql++-dev libmysql++3v5 libmysqlclient-dev libmysqlclient21 libncurses-dev libncurses5-dev libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librbio2 libroken18-heimdal librtmp1 libruby2.7 libsasl2-2 libsasl2-modules-db libsigsegv2 libsliplu1 libspqr2 libsqlite3-dev libssh-4 libssl-dev libsub-override-perl libsuitesparse-dev libsuitesparseconfig5 libtool libuchardet0 libumfpack5 libwind0-heimdal libxml2 libyaml-0-2 lzma-dev m4 mailcap man-db media-types mime-support mysql-common po-debconf python3 python3-minimal python3.9 python3.9-minimal rake ruby ruby-asciidoctor ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration samtools zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libbamtools-doc liblapack-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html icu-doc liblzma-doc libmysql++-doc ncurses-doc sqlite3-doc libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binfmt-support ri ruby-dev bundler cwltool Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdextrautils debhelper default-libmysqlclient-dev dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libamd2 libarchive-zip-perl libasn1-8-heimdal libbamtools-dev libbamtools2.5.1 libblas-dev libblas3 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization-dev libboost-serialization1.74-dev libboost-serialization1.74.0 libboost1.74-dev libbrotli1 libbtf1 libbz2-dev libcamd2 libccolamd2 libcholmod3 libcolamd2 libcurl3-gnutls libcurl4-gnutls-dev libcxsparse3 libdebhelper-perl libdeflate-dev libdeflate0 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgraphblas3 libgsl-dev libgsl25 libgslcblas0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu-dev libicu67 libklu1 libkrb5-26-heimdal liblapack-dev liblapack3 libldap-2.4-2 libldl2 liblpsolve55-dev liblzma-dev libmagic-mgc libmagic1 libmetis5 libmongoose2 libmysql++-dev libmysql++3v5 libmysqlclient-dev libmysqlclient21 libncurses-dev libncurses5-dev libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librbio2 libroken18-heimdal librtmp1 libruby2.7 libsasl2-2 libsasl2-modules-db libsigsegv2 libsliplu1 libspqr2 libsqlite3-dev libssh-4 libssl-dev libsub-override-perl libsuitesparse-dev libsuitesparseconfig5 libtool libuchardet0 libumfpack5 libwind0-heimdal libxml2 libyaml-0-2 lzma-dev m4 mailcap man-db media-types mime-support mysql-common po-debconf python3 python3-minimal python3.9 python3.9-minimal rake ruby ruby-asciidoctor ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration samtools sbuild-build-depends-augustus-dummy zlib1g-dev 0 upgraded, 134 newly installed, 0 to remove and 0 not upgraded. Need to get 85.7 MB of archives. After this operation, 615 MB of additional disk space will be used. Get:1 copy:/<>/resolver-sdXt2j/apt_archive ./ sbuild-build-depends-augustus-dummy 0.invalid.0 [972 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpython3.9-minimal ppc64el 3.9.1-1 [749 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libexpat1 ppc64el 2.2.10-1 [77.6 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3.9-minimal ppc64el 3.9.1-1 [1829 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el python3-minimal ppc64el 3.9.1-1 [24.0 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main ppc64el media-types all 1.0.1ubuntu1 [10.9 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main ppc64el mailcap all 3.67ubuntu1 [24.2 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main ppc64el mime-support all 3.66 [3696 B] Get:9 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpython3.9-stdlib ppc64el 3.9.1-1 [1754 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main ppc64el python3.9 ppc64el 3.9.1-1 [414 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libpython3-stdlib ppc64el 3.9.1-1 [7244 B] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el python3 ppc64el 3.9.1-1 [48.8 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main ppc64el bsdextrautils ppc64el 2.36.1-1ubuntu2 [83.5 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libuchardet0 ppc64el 0.0.7-1 [71.0 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main ppc64el groff-base ppc64el 1.22.4-5 [922 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpipeline1 ppc64el 1.5.3-1 [29.6 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main ppc64el man-db ppc64el 2.9.3-2 [1148 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmagic-mgc ppc64el 1:5.39-3 [228 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmagic1 ppc64el 1:5.39-3 [93.4 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main ppc64el file ppc64el 1:5.39-3 [24.7 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libelf1 ppc64el 0.182-2 [52.4 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libicu67 ppc64el 67.1-5 [8813 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxml2 ppc64el 2.9.10+dfsg-6.3build1 [656 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libyaml-0-2 ppc64el 0.2.2-1 [55.8 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el gettext-base ppc64el 0.21-3 [44.7 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpsl5 ppc64el 0.21.0-1.1ubuntu1 [54.0 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main ppc64el rubygems-integration all 1.17.3 [5208 B] Get:28 http://ftpmaster.internal/ubuntu hirsute/main ppc64el rake all 13.0.1-4 [61.6 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ruby-minitest all 5.13.0-1 [40.9 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ruby-net-telnet all 0.1.1-2 [12.6 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ruby-power-assert all 1.1.7-1 [11.4 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ruby-test-unit all 3.3.5-1 [73.2 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ruby-xmlrpc all 0.3.0-2 [23.8 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libruby2.7 ppc64el 2.7.2-3 [3793 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ruby2.7 ppc64el 2.7.2-3 [95.7 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el ruby-rubygems all 3.2.0~rc.2-5 [217 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el ruby ppc64el 1:2.7+2 [5276 B] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el ruby-asciidoctor all 2.0.12-1 [168 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el asciidoctor all 2.0.12-1 [43.7 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libsigsegv2 ppc64el 2.12-3 [14.5 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main ppc64el m4 ppc64el 1.4.18-4 [210 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main ppc64el autoconf all 2.69-14 [293 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main ppc64el autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main ppc64el automake all 1:1.16.3-1ubuntu1 [552 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el autopoint all 0.21-3 [423 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtool all 2.4.6-14 [161 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dh-autoreconf all 19 [16.1 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libdebhelper-perl all 13.3ubuntu4 [63.8 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsub-override-perl all 0.09-2 [9532 B] Get:51 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:53 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dwz ppc64el 0.13+20201015-2 [156 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el gettext ppc64el 0.21-3 [897 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main ppc64el intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el debhelper all 13.3ubuntu4 [881 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main ppc64el mysql-common all 5.8+1.0.5ubuntu2 [7496 B] Get:59 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmysqlclient21 ppc64el 8.0.22-0ubuntu0.20.10.2 [1273 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libssl-dev ppc64el 1.1.1f-1ubuntu5 [1672 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2ubuntu4 [166 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmysqlclient-dev ppc64el 8.0.22-0ubuntu0.20.10.2 [1605 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main ppc64el default-libmysqlclient-dev ppc64el 1.0.5ubuntu2 [3932 B] Get:64 http://ftpmaster.internal/ubuntu hirsute/main ppc64el icu-devtools ppc64el 67.1-5 [210 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsuitesparseconfig5 ppc64el 1:5.8.1+dfsg-2 [10.2 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libamd2 ppc64el 1:5.8.1+dfsg-2 [24.3 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libroken18-heimdal ppc64el 7.7.0+dfsg-2 [46.4 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libasn1-8-heimdal ppc64el 7.7.0+dfsg-2 [176 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el libbamtools2.5.1 ppc64el 2.5.1+dfsg-7build1 [182 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el libbamtools-dev ppc64el 2.5.1+dfsg-7build1 [246 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libblas3 ppc64el 3.9.0-3ubuntu1 [106 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libblas-dev ppc64el 3.9.0-3ubuntu1 [109 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libboost1.74-dev ppc64el 1.74.0-3ubuntu2 [9508 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libboost-regex1.74.0 ppc64el 1.74.0-3ubuntu2 [487 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libicu-dev ppc64el 67.1-5 [9990 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libboost-regex1.74-dev ppc64el 1.74.0-3ubuntu2 [557 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libboost-iostreams1.74.0 ppc64el 1.74.0-3ubuntu2 [237 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libboost-iostreams1.74-dev ppc64el 1.74.0-3ubuntu2 [242 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libboost-iostreams-dev ppc64el 1.74.0.3ubuntu2 [3156 B] Get:80 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libboost-serialization1.74.0 ppc64el 1.74.0-3ubuntu2 [315 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libboost-serialization1.74-dev ppc64el 1.74.0-3ubuntu2 [361 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libboost-serialization-dev ppc64el 1.74.0.3ubuntu2 [3384 B] Get:83 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libbrotli1 ppc64el 1.0.9-2build2 [304 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libbtf1 ppc64el 1:5.8.1+dfsg-2 [14.1 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libbz2-dev ppc64el 1.0.8-4ubuntu2 [44.5 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcamd2 ppc64el 1:5.8.1+dfsg-2 [26.6 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libccolamd2 ppc64el 1:5.8.1+dfsg-2 [27.0 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcolamd2 ppc64el 1:5.8.1+dfsg-2 [19.2 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libgfortran5 ppc64el 10.2.1-2ubuntu3 [432 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblapack3 ppc64el 3.9.0-3ubuntu1 [1659 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmetis5 ppc64el 5.1.0.dfsg-7 [171 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcholmod3 ppc64el 1:5.8.1+dfsg-2 [380 kB] Get:93 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libheimbase1-heimdal ppc64el 7.7.0+dfsg-2 [32.4 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libhcrypto4-heimdal ppc64el 7.7.0+dfsg-2 [108 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libwind0-heimdal ppc64el 7.7.0+dfsg-2 [48.9 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libhx509-5-heimdal ppc64el 7.7.0+dfsg-2 [120 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libkrb5-26-heimdal ppc64el 7.7.0+dfsg-2 [234 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libheimntlm0-heimdal ppc64el 7.7.0+dfsg-2 [17.4 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgssapi3-heimdal ppc64el 7.7.0+dfsg-2 [105 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsasl2-modules-db ppc64el 2.1.27+dfsg-2ubuntu1 [16.8 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsasl2-2 ppc64el 2.1.27+dfsg-2ubuntu1 [60.0 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libldap-2.4-2 ppc64el 2.4.53+dfsg-1ubuntu5 [177 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libnghttp2-14 ppc64el 1.42.0-1 [83.7 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build2 [59.2 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libssh-4 ppc64el 0.9.5-1 [195 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcurl3-gnutls ppc64el 7.72.0-1ubuntu1 [259 kB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcurl4-gnutls-dev ppc64el 7.72.0-1ubuntu1 [363 kB] Get:108 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcxsparse3 ppc64el 1:5.8.1+dfsg-2 [84.0 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libdeflate0 ppc64el 1.6-1 [64.0 kB] Get:110 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libdeflate-dev ppc64el 1.6-1 [48.0 kB] Get:111 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgraphblas3 ppc64el 1:5.8.1+dfsg-2 [5948 kB] Get:112 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libgslcblas0 ppc64el 2.6+dfsg-2 [206 kB] Get:113 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libgsl25 ppc64el 2.6+dfsg-2 [1083 kB] Get:114 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libgsl-dev ppc64el 2.6+dfsg-2 [1515 kB] Get:115 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libhts3 ppc64el 1.11-4 [433 kB] Get:116 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblzma-dev ppc64el 5.2.4-1ubuntu1 [164 kB] Get:117 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libhts-dev ppc64el 1.11-4 [3961 kB] Get:118 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libklu1 ppc64el 1:5.8.1+dfsg-2 [85.4 kB] Get:119 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblapack-dev ppc64el 3.9.0-3ubuntu1 [3362 kB] Get:120 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libldl2 ppc64el 1:5.8.1+dfsg-2 [13.1 kB] Get:121 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmongoose2 ppc64el 1:5.8.1+dfsg-2 [37.0 kB] Get:122 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libumfpack5 ppc64el 1:5.8.1+dfsg-2 [254 kB] Get:123 http://ftpmaster.internal/ubuntu hirsute/main ppc64el librbio2 ppc64el 1:5.8.1+dfsg-2 [30.1 kB] Get:124 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libspqr2 ppc64el 1:5.8.1+dfsg-2 [77.7 kB] Get:125 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsliplu1 ppc64el 1:5.8.1+dfsg-2 [37.1 kB] Get:126 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsuitesparse-dev ppc64el 1:5.8.1+dfsg-2 [7445 kB] Get:127 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblpsolve55-dev ppc64el 5.5.2.5-2 [439 kB] Get:128 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libmysql++3v5 ppc64el 3.2.5-2 [113 kB] Get:129 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libmysql++-dev ppc64el 3.2.5-2 [95.9 kB] Get:130 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libncurses-dev ppc64el 6.2+20201114-2 [419 kB] Get:131 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libncurses5-dev ppc64el 6.2+20201114-2 [984 B] Get:132 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsqlite3-dev ppc64el 3.34.0-1 [794 kB] Get:133 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el lzma-dev all 9.22-2.2 [41.6 kB] Get:134 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el samtools ppc64el 1.11-1 [590 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 85.7 MB in 5s (18.4 MB/s) Selecting previously unselected package libpython3.9-minimal:ppc64el. (Reading database ... 14869 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.1-1_ppc64el.deb ... Unpacking libpython3.9-minimal:ppc64el (3.9.1-1) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../libexpat1_2.2.10-1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.2.10-1) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.1-1_ppc64el.deb ... Unpacking python3.9-minimal (3.9.1-1) ... Setting up libpython3.9-minimal:ppc64el (3.9.1-1) ... Setting up libexpat1:ppc64el (2.2.10-1) ... Setting up python3.9-minimal (3.9.1-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 15162 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.1-1_ppc64el.deb ... Unpacking python3-minimal (3.9.1-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_1.0.1ubuntu1_all.deb ... Unpacking media-types (1.0.1ubuntu1) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.67ubuntu1_all.deb ... Unpacking mailcap (3.67ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libpython3.9-stdlib:ppc64el. Preparing to unpack .../4-libpython3.9-stdlib_3.9.1-1_ppc64el.deb ... Unpacking libpython3.9-stdlib:ppc64el (3.9.1-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../5-python3.9_3.9.1-1_ppc64el.deb ... Unpacking python3.9 (3.9.1-1) ... Selecting previously unselected package libpython3-stdlib:ppc64el. Preparing to unpack .../6-libpython3-stdlib_3.9.1-1_ppc64el.deb ... Unpacking libpython3-stdlib:ppc64el (3.9.1-1) ... Setting up python3-minimal (3.9.1-1) ... Selecting previously unselected package python3. (Reading database ... 15576 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.1-1_ppc64el.deb ... Unpacking python3 (3.9.1-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../001-bsdextrautils_2.36.1-1ubuntu2_ppc64el.deb ... Unpacking bsdextrautils (2.36.1-1ubuntu2) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../002-libuchardet0_0.0.7-1_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-5_ppc64el.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../004-libpipeline1_1.5.3-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.3-2_ppc64el.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.39-3_ppc64el.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../007-libmagic1_1%3a5.39-3_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.39-3_ppc64el.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package libelf1:ppc64el. Preparing to unpack .../009-libelf1_0.182-2_ppc64el.deb ... Unpacking libelf1:ppc64el (0.182-2) ... Selecting previously unselected package libicu67:ppc64el. Preparing to unpack .../010-libicu67_67.1-5_ppc64el.deb ... Unpacking libicu67:ppc64el (67.1-5) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../011-libxml2_2.9.10+dfsg-6.3build1_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.10+dfsg-6.3build1) ... Selecting previously unselected package libyaml-0-2:ppc64el. Preparing to unpack .../012-libyaml-0-2_0.2.2-1_ppc64el.deb ... Unpacking libyaml-0-2:ppc64el (0.2.2-1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../013-gettext-base_0.21-3_ppc64el.deb ... Unpacking gettext-base (0.21-3) ... Selecting previously unselected package libpsl5:ppc64el. Preparing to unpack .../014-libpsl5_0.21.0-1.1ubuntu1_ppc64el.deb ... Unpacking libpsl5:ppc64el (0.21.0-1.1ubuntu1) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../015-rubygems-integration_1.17.3_all.deb ... Unpacking rubygems-integration (1.17.3) ... Selecting previously unselected package rake. Preparing to unpack .../016-rake_13.0.1-4_all.deb ... Unpacking rake (13.0.1-4) ... Selecting previously unselected package ruby-minitest. Preparing to unpack .../017-ruby-minitest_5.13.0-1_all.deb ... Unpacking ruby-minitest (5.13.0-1) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../018-ruby-net-telnet_0.1.1-2_all.deb ... Unpacking ruby-net-telnet (0.1.1-2) ... Selecting previously unselected package ruby-power-assert. Preparing to unpack .../019-ruby-power-assert_1.1.7-1_all.deb ... Unpacking ruby-power-assert (1.1.7-1) ... Selecting previously unselected package ruby-test-unit. Preparing to unpack .../020-ruby-test-unit_3.3.5-1_all.deb ... Unpacking ruby-test-unit (3.3.5-1) ... Selecting previously unselected package ruby-xmlrpc. Preparing to unpack .../021-ruby-xmlrpc_0.3.0-2_all.deb ... Unpacking ruby-xmlrpc (0.3.0-2) ... Selecting previously unselected package libruby2.7:ppc64el. Preparing to unpack .../022-libruby2.7_2.7.2-3_ppc64el.deb ... Unpacking libruby2.7:ppc64el (2.7.2-3) ... Selecting previously unselected package ruby2.7. Preparing to unpack .../023-ruby2.7_2.7.2-3_ppc64el.deb ... Unpacking ruby2.7 (2.7.2-3) ... Selecting previously unselected package ruby-rubygems. Preparing to unpack .../024-ruby-rubygems_3.2.0~rc.2-5_all.deb ... Unpacking ruby-rubygems (3.2.0~rc.2-5) ... Selecting previously unselected package ruby. Preparing to unpack .../025-ruby_1%3a2.7+2_ppc64el.deb ... Unpacking ruby (1:2.7+2) ... Selecting previously unselected package ruby-asciidoctor. Preparing to unpack .../026-ruby-asciidoctor_2.0.12-1_all.deb ... Unpacking ruby-asciidoctor (2.0.12-1) ... Selecting previously unselected package asciidoctor. Preparing to unpack .../027-asciidoctor_2.0.12-1_all.deb ... Unpacking asciidoctor (2.0.12-1) ... Selecting previously unselected package libsigsegv2:ppc64el. Preparing to unpack .../028-libsigsegv2_2.12-3_ppc64el.deb ... Unpacking libsigsegv2:ppc64el (2.12-3) ... Selecting previously unselected package m4. Preparing to unpack .../029-m4_1.4.18-4_ppc64el.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../030-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../031-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../032-automake_1%3a1.16.3-1ubuntu1_all.deb ... Unpacking automake (1:1.16.3-1ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../033-autopoint_0.21-3_all.deb ... Unpacking autopoint (0.21-3) ... Selecting previously unselected package libtool. Preparing to unpack .../034-libtool_2.4.6-14_all.deb ... Unpacking libtool (2.4.6-14) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../035-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../036-libdebhelper-perl_13.3ubuntu4_all.deb ... Unpacking libdebhelper-perl (13.3ubuntu4) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../037-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../038-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../039-libfile-stripnondeterminism-perl_1.9.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.9.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../040-dh-strip-nondeterminism_1.9.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.9.0-1) ... Selecting previously unselected package dwz. Preparing to unpack .../041-dwz_0.13+20201015-2_ppc64el.deb ... Unpacking dwz (0.13+20201015-2) ... Selecting previously unselected package gettext. Preparing to unpack .../042-gettext_0.21-3_ppc64el.deb ... Unpacking gettext (0.21-3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../043-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../044-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../045-debhelper_13.3ubuntu4_all.deb ... Unpacking debhelper (13.3ubuntu4) ... Selecting previously unselected package mysql-common. Preparing to unpack .../046-mysql-common_5.8+1.0.5ubuntu2_all.deb ... Unpacking mysql-common (5.8+1.0.5ubuntu2) ... Selecting previously unselected package libmysqlclient21:ppc64el. Preparing to unpack .../047-libmysqlclient21_8.0.22-0ubuntu0.20.10.2_ppc64el.deb ... Unpacking libmysqlclient21:ppc64el (8.0.22-0ubuntu0.20.10.2) ... Selecting previously unselected package libssl-dev:ppc64el. Preparing to unpack .../048-libssl-dev_1.1.1f-1ubuntu5_ppc64el.deb ... Unpacking libssl-dev:ppc64el (1.1.1f-1ubuntu5) ... Selecting previously unselected package zlib1g-dev:ppc64el. Preparing to unpack .../049-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu4_ppc64el.deb ... Unpacking zlib1g-dev:ppc64el (1:1.2.11.dfsg-2ubuntu4) ... Selecting previously unselected package libmysqlclient-dev. Preparing to unpack .../050-libmysqlclient-dev_8.0.22-0ubuntu0.20.10.2_ppc64el.deb ... Unpacking libmysqlclient-dev (8.0.22-0ubuntu0.20.10.2) ... Selecting previously unselected package default-libmysqlclient-dev:ppc64el. Preparing to unpack .../051-default-libmysqlclient-dev_1.0.5ubuntu2_ppc64el.deb ... Unpacking default-libmysqlclient-dev:ppc64el (1.0.5ubuntu2) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../052-icu-devtools_67.1-5_ppc64el.deb ... Unpacking icu-devtools (67.1-5) ... Selecting previously unselected package libsuitesparseconfig5:ppc64el. Preparing to unpack .../053-libsuitesparseconfig5_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libsuitesparseconfig5:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libamd2:ppc64el. Preparing to unpack .../054-libamd2_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libamd2:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libroken18-heimdal:ppc64el. Preparing to unpack .../055-libroken18-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libroken18-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libasn1-8-heimdal:ppc64el. Preparing to unpack .../056-libasn1-8-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libasn1-8-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libbamtools2.5.1:ppc64el. Preparing to unpack .../057-libbamtools2.5.1_2.5.1+dfsg-7build1_ppc64el.deb ... Unpacking libbamtools2.5.1:ppc64el (2.5.1+dfsg-7build1) ... Selecting previously unselected package libbamtools-dev:ppc64el. Preparing to unpack .../058-libbamtools-dev_2.5.1+dfsg-7build1_ppc64el.deb ... Unpacking libbamtools-dev:ppc64el (2.5.1+dfsg-7build1) ... Selecting previously unselected package libblas3:ppc64el. Preparing to unpack .../059-libblas3_3.9.0-3ubuntu1_ppc64el.deb ... Unpacking libblas3:ppc64el (3.9.0-3ubuntu1) ... Selecting previously unselected package libblas-dev:ppc64el. Preparing to unpack .../060-libblas-dev_3.9.0-3ubuntu1_ppc64el.deb ... Unpacking libblas-dev:ppc64el (3.9.0-3ubuntu1) ... Selecting previously unselected package libboost1.74-dev:ppc64el. Preparing to unpack .../061-libboost1.74-dev_1.74.0-3ubuntu2_ppc64el.deb ... Unpacking libboost1.74-dev:ppc64el (1.74.0-3ubuntu2) ... Selecting previously unselected package libboost-regex1.74.0:ppc64el. Preparing to unpack .../062-libboost-regex1.74.0_1.74.0-3ubuntu2_ppc64el.deb ... Unpacking libboost-regex1.74.0:ppc64el (1.74.0-3ubuntu2) ... Selecting previously unselected package libicu-dev:ppc64el. Preparing to unpack .../063-libicu-dev_67.1-5_ppc64el.deb ... Unpacking libicu-dev:ppc64el (67.1-5) ... Selecting previously unselected package libboost-regex1.74-dev:ppc64el. Preparing to unpack .../064-libboost-regex1.74-dev_1.74.0-3ubuntu2_ppc64el.deb ... Unpacking libboost-regex1.74-dev:ppc64el (1.74.0-3ubuntu2) ... Selecting previously unselected package libboost-iostreams1.74.0:ppc64el. Preparing to unpack .../065-libboost-iostreams1.74.0_1.74.0-3ubuntu2_ppc64el.deb ... Unpacking libboost-iostreams1.74.0:ppc64el (1.74.0-3ubuntu2) ... Selecting previously unselected package libboost-iostreams1.74-dev:ppc64el. Preparing to unpack .../066-libboost-iostreams1.74-dev_1.74.0-3ubuntu2_ppc64el.deb ... Unpacking libboost-iostreams1.74-dev:ppc64el (1.74.0-3ubuntu2) ... Selecting previously unselected package libboost-iostreams-dev:ppc64el. Preparing to unpack .../067-libboost-iostreams-dev_1.74.0.3ubuntu2_ppc64el.deb ... Unpacking libboost-iostreams-dev:ppc64el (1.74.0.3ubuntu2) ... Selecting previously unselected package libboost-serialization1.74.0:ppc64el. Preparing to unpack .../068-libboost-serialization1.74.0_1.74.0-3ubuntu2_ppc64el.deb ... Unpacking libboost-serialization1.74.0:ppc64el (1.74.0-3ubuntu2) ... Selecting previously unselected package libboost-serialization1.74-dev:ppc64el. Preparing to unpack .../069-libboost-serialization1.74-dev_1.74.0-3ubuntu2_ppc64el.deb ... Unpacking libboost-serialization1.74-dev:ppc64el (1.74.0-3ubuntu2) ... Selecting previously unselected package libboost-serialization-dev:ppc64el. Preparing to unpack .../070-libboost-serialization-dev_1.74.0.3ubuntu2_ppc64el.deb ... Unpacking libboost-serialization-dev:ppc64el (1.74.0.3ubuntu2) ... Selecting previously unselected package libbrotli1:ppc64el. Preparing to unpack .../071-libbrotli1_1.0.9-2build2_ppc64el.deb ... Unpacking libbrotli1:ppc64el (1.0.9-2build2) ... Selecting previously unselected package libbtf1:ppc64el. Preparing to unpack .../072-libbtf1_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libbtf1:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libbz2-dev:ppc64el. Preparing to unpack .../073-libbz2-dev_1.0.8-4ubuntu2_ppc64el.deb ... Unpacking libbz2-dev:ppc64el (1.0.8-4ubuntu2) ... Selecting previously unselected package libcamd2:ppc64el. Preparing to unpack .../074-libcamd2_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libcamd2:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libccolamd2:ppc64el. Preparing to unpack .../075-libccolamd2_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libccolamd2:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libcolamd2:ppc64el. Preparing to unpack .../076-libcolamd2_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libcolamd2:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libgfortran5:ppc64el. Preparing to unpack .../077-libgfortran5_10.2.1-2ubuntu3_ppc64el.deb ... Unpacking libgfortran5:ppc64el (10.2.1-2ubuntu3) ... Selecting previously unselected package liblapack3:ppc64el. Preparing to unpack .../078-liblapack3_3.9.0-3ubuntu1_ppc64el.deb ... Unpacking liblapack3:ppc64el (3.9.0-3ubuntu1) ... Selecting previously unselected package libmetis5:ppc64el. Preparing to unpack .../079-libmetis5_5.1.0.dfsg-7_ppc64el.deb ... Unpacking libmetis5:ppc64el (5.1.0.dfsg-7) ... Selecting previously unselected package libcholmod3:ppc64el. Preparing to unpack .../080-libcholmod3_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libcholmod3:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libheimbase1-heimdal:ppc64el. Preparing to unpack .../081-libheimbase1-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libheimbase1-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libhcrypto4-heimdal:ppc64el. Preparing to unpack .../082-libhcrypto4-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libhcrypto4-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libwind0-heimdal:ppc64el. Preparing to unpack .../083-libwind0-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libwind0-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libhx509-5-heimdal:ppc64el. Preparing to unpack .../084-libhx509-5-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libhx509-5-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libkrb5-26-heimdal:ppc64el. Preparing to unpack .../085-libkrb5-26-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libkrb5-26-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libheimntlm0-heimdal:ppc64el. Preparing to unpack .../086-libheimntlm0-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libheimntlm0-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libgssapi3-heimdal:ppc64el. Preparing to unpack .../087-libgssapi3-heimdal_7.7.0+dfsg-2_ppc64el.deb ... Unpacking libgssapi3-heimdal:ppc64el (7.7.0+dfsg-2) ... Selecting previously unselected package libsasl2-modules-db:ppc64el. Preparing to unpack .../088-libsasl2-modules-db_2.1.27+dfsg-2ubuntu1_ppc64el.deb ... Unpacking libsasl2-modules-db:ppc64el (2.1.27+dfsg-2ubuntu1) ... Selecting previously unselected package libsasl2-2:ppc64el. Preparing to unpack .../089-libsasl2-2_2.1.27+dfsg-2ubuntu1_ppc64el.deb ... Unpacking libsasl2-2:ppc64el (2.1.27+dfsg-2ubuntu1) ... Selecting previously unselected package libldap-2.4-2:ppc64el. Preparing to unpack .../090-libldap-2.4-2_2.4.53+dfsg-1ubuntu5_ppc64el.deb ... Unpacking libldap-2.4-2:ppc64el (2.4.53+dfsg-1ubuntu5) ... Selecting previously unselected package libnghttp2-14:ppc64el. Preparing to unpack .../091-libnghttp2-14_1.42.0-1_ppc64el.deb ... Unpacking libnghttp2-14:ppc64el (1.42.0-1) ... Selecting previously unselected package librtmp1:ppc64el. Preparing to unpack .../092-librtmp1_2.4+20151223.gitfa8646d.1-2build2_ppc64el.deb ... Unpacking librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build2) ... Selecting previously unselected package libssh-4:ppc64el. Preparing to unpack .../093-libssh-4_0.9.5-1_ppc64el.deb ... Unpacking libssh-4:ppc64el (0.9.5-1) ... Selecting previously unselected package libcurl3-gnutls:ppc64el. Preparing to unpack .../094-libcurl3-gnutls_7.72.0-1ubuntu1_ppc64el.deb ... Unpacking libcurl3-gnutls:ppc64el (7.72.0-1ubuntu1) ... Selecting previously unselected package libcurl4-gnutls-dev:ppc64el. Preparing to unpack .../095-libcurl4-gnutls-dev_7.72.0-1ubuntu1_ppc64el.deb ... Unpacking libcurl4-gnutls-dev:ppc64el (7.72.0-1ubuntu1) ... Selecting previously unselected package libcxsparse3:ppc64el. Preparing to unpack .../096-libcxsparse3_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libcxsparse3:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libdeflate0:ppc64el. Preparing to unpack .../097-libdeflate0_1.6-1_ppc64el.deb ... Unpacking libdeflate0:ppc64el (1.6-1) ... Selecting previously unselected package libdeflate-dev:ppc64el. Preparing to unpack .../098-libdeflate-dev_1.6-1_ppc64el.deb ... Unpacking libdeflate-dev:ppc64el (1.6-1) ... Selecting previously unselected package libgraphblas3:ppc64el. Preparing to unpack .../099-libgraphblas3_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libgraphblas3:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libgslcblas0:ppc64el. Preparing to unpack .../100-libgslcblas0_2.6+dfsg-2_ppc64el.deb ... Unpacking libgslcblas0:ppc64el (2.6+dfsg-2) ... Selecting previously unselected package libgsl25:ppc64el. Preparing to unpack .../101-libgsl25_2.6+dfsg-2_ppc64el.deb ... Unpacking libgsl25:ppc64el (2.6+dfsg-2) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../102-libgsl-dev_2.6+dfsg-2_ppc64el.deb ... Unpacking libgsl-dev (2.6+dfsg-2) ... Selecting previously unselected package libhts3:ppc64el. Preparing to unpack .../103-libhts3_1.11-4_ppc64el.deb ... Unpacking libhts3:ppc64el (1.11-4) ... Selecting previously unselected package liblzma-dev:ppc64el. Preparing to unpack .../104-liblzma-dev_5.2.4-1ubuntu1_ppc64el.deb ... Unpacking liblzma-dev:ppc64el (5.2.4-1ubuntu1) ... Selecting previously unselected package libhts-dev:ppc64el. Preparing to unpack .../105-libhts-dev_1.11-4_ppc64el.deb ... Unpacking libhts-dev:ppc64el (1.11-4) ... Selecting previously unselected package libklu1:ppc64el. Preparing to unpack .../106-libklu1_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libklu1:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package liblapack-dev:ppc64el. Preparing to unpack .../107-liblapack-dev_3.9.0-3ubuntu1_ppc64el.deb ... Unpacking liblapack-dev:ppc64el (3.9.0-3ubuntu1) ... Selecting previously unselected package libldl2:ppc64el. Preparing to unpack .../108-libldl2_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libldl2:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libmongoose2:ppc64el. Preparing to unpack .../109-libmongoose2_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libmongoose2:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libumfpack5:ppc64el. Preparing to unpack .../110-libumfpack5_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libumfpack5:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package librbio2:ppc64el. Preparing to unpack .../111-librbio2_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking librbio2:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libspqr2:ppc64el. Preparing to unpack .../112-libspqr2_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libspqr2:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libsliplu1:ppc64el. Preparing to unpack .../113-libsliplu1_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libsliplu1:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package libsuitesparse-dev:ppc64el. Preparing to unpack .../114-libsuitesparse-dev_1%3a5.8.1+dfsg-2_ppc64el.deb ... Unpacking libsuitesparse-dev:ppc64el (1:5.8.1+dfsg-2) ... Selecting previously unselected package liblpsolve55-dev. Preparing to unpack .../115-liblpsolve55-dev_5.5.2.5-2_ppc64el.deb ... Unpacking liblpsolve55-dev (5.5.2.5-2) ... Selecting previously unselected package libmysql++3v5:ppc64el. Preparing to unpack .../116-libmysql++3v5_3.2.5-2_ppc64el.deb ... Unpacking libmysql++3v5:ppc64el (3.2.5-2) ... Selecting previously unselected package libmysql++-dev:ppc64el. Preparing to unpack .../117-libmysql++-dev_3.2.5-2_ppc64el.deb ... Unpacking libmysql++-dev:ppc64el (3.2.5-2) ... Selecting previously unselected package libncurses-dev:ppc64el. Preparing to unpack .../118-libncurses-dev_6.2+20201114-2_ppc64el.deb ... Unpacking libncurses-dev:ppc64el (6.2+20201114-2) ... Selecting previously unselected package libncurses5-dev:ppc64el. Preparing to unpack .../119-libncurses5-dev_6.2+20201114-2_ppc64el.deb ... Unpacking libncurses5-dev:ppc64el (6.2+20201114-2) ... Selecting previously unselected package libsqlite3-dev:ppc64el. Preparing to unpack .../120-libsqlite3-dev_3.34.0-1_ppc64el.deb ... Unpacking libsqlite3-dev:ppc64el (3.34.0-1) ... Selecting previously unselected package lzma-dev. Preparing to unpack .../121-lzma-dev_9.22-2.2_all.deb ... Unpacking lzma-dev (9.22-2.2) ... Selecting previously unselected package samtools. Preparing to unpack .../122-samtools_1.11-1_ppc64el.deb ... Unpacking samtools (1.11-1) ... Selecting previously unselected package sbuild-build-depends-augustus-dummy. Preparing to unpack .../123-sbuild-build-depends-augustus-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-augustus-dummy (0.invalid.0) ... Setting up media-types (1.0.1ubuntu1) ... Setting up libpipeline1:ppc64el (1.5.3-1) ... Setting up libgraphblas3:ppc64el (1:5.8.1+dfsg-2) ... Setting up mysql-common (5.8+1.0.5ubuntu2) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libmysqlclient21:ppc64el (8.0.22-0ubuntu0.20.10.2) ... Setting up libncurses-dev:ppc64el (6.2+20201114-2) ... Setting up libpsl5:ppc64el (0.21.0-1.1ubuntu1) ... Setting up libboost1.74-dev:ppc64el (1.74.0-3ubuntu2) ... Setting up bsdextrautils (2.36.1-1ubuntu2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:ppc64el (67.1-5) ... Setting up libgslcblas0:ppc64el (2.6+dfsg-2) ... Setting up ruby-power-assert (1.1.7-1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libgsl25:ppc64el (2.6+dfsg-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:ppc64el (0.2.2-1) ... Setting up libboost-iostreams1.74.0:ppc64el (1.74.0-3ubuntu2) ... Setting up libdebhelper-perl (13.3ubuntu4) ... Setting up libbrotli1:ppc64el (1.0.9-2build2) ... Setting up libldl2:ppc64el (1:5.8.1+dfsg-2) ... Setting up libnghttp2-14:ppc64el (1.42.0-1) ... Setting up libmagic1:ppc64el (1:5.39-3) ... Setting up libdeflate0:ppc64el (1.6-1) ... Setting up gettext-base (0.21-3) ... Setting up rubygems-integration (1.17.3) ... Setting up libmetis5:ppc64el (5.1.0.dfsg-7) ... Setting up file (1:5.39-3) ... Setting up libbtf1:ppc64el (1:5.8.1+dfsg-2) ... Setting up libsasl2-modules-db:ppc64el (2.1.27+dfsg-2ubuntu1) ... Setting up ruby-minitest (5.13.0-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:ppc64el (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up libsqlite3-dev:ppc64el (3.34.0-1) ... Setting up ruby-test-unit (3.3.5-1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build2) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libsigsegv2:ppc64el (2.12-3) ... Setting up libboost-regex1.74.0:ppc64el (1.74.0-3ubuntu2) ... Setting up libbamtools2.5.1:ppc64el (2.5.1+dfsg-7build1) ... Setting up libssl-dev:ppc64el (1.1.1f-1ubuntu5) ... Setting up autopoint (0.21-3) ... Setting up icu-devtools (67.1-5) ... Setting up libmysql++3v5:ppc64el (3.2.5-2) ... Setting up libsasl2-2:ppc64el (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:ppc64el (0.9.5-1) ... Setting up libgfortran5:ppc64el (10.2.1-2ubuntu3) ... Setting up libroken18-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up liblzma-dev:ppc64el (5.2.4-1ubuntu1) ... Setting up libboost-serialization1.74.0:ppc64el (1.74.0-3ubuntu2) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-2ubuntu4) ... Setting up libuchardet0:ppc64el (0.0.7-1) ... Setting up libncurses5-dev:ppc64el (6.2+20201114-2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libcxsparse3:ppc64el (1:5.8.1+dfsg-2) ... Setting up libdeflate-dev:ppc64el (1.6-1) ... Setting up mailcap (3.67ubuntu1) ... Setting up libelf1:ppc64el (0.182-2) ... Setting up libicu-dev:ppc64el (67.1-5) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libxml2:ppc64el (2.9.10+dfsg-6.3build1) ... Setting up libsuitesparseconfig5:ppc64el (1:5.8.1+dfsg-2) ... Setting up libblas-dev:ppc64el (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode Setting up libmysqlclient-dev (8.0.22-0ubuntu0.20.10.2) ... Setting up librbio2:ppc64el (1:5.8.1+dfsg-2) ... Setting up libpython3.9-stdlib:ppc64el (3.9.1-1) ... Setting up libpython3-stdlib:ppc64el (3.9.1-1) ... Setting up libheimbase1-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up libbz2-dev:ppc64el (1.0.8-4ubuntu2) ... Setting up default-libmysqlclient-dev:ppc64el (1.0.5ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libamd2:ppc64el (1:5.8.1+dfsg-2) ... Setting up liblapack3:ppc64el (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up gettext (0.21-3) ... Setting up libgsl-dev (2.6+dfsg-2) ... Setting up mime-support (3.66) ... Setting up libcolamd2:ppc64el (1:5.8.1+dfsg-2) ... Setting up libtool (2.4.6-14) ... Setting up libasn1-8-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up m4 (1.4.18-4) ... Setting up libhcrypto4-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libmysql++-dev:ppc64el (3.2.5-2) ... Setting up libsliplu1:ppc64el (1:5.8.1+dfsg-2) ... Setting up libcamd2:ppc64el (1:5.8.1+dfsg-2) ... Setting up libmongoose2:ppc64el (1:5.8.1+dfsg-2) ... Setting up libwind0-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up libbamtools-dev:ppc64el (2.5.1+dfsg-7build1) ... Setting up liblapack-dev:ppc64el (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode Setting up lzma-dev (9.22-2.2) ... Setting up autoconf (2.69-14) ... Setting up libboost-serialization1.74-dev:ppc64el (1.74.0-3ubuntu2) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13+20201015-2) ... Setting up libboost-regex1.74-dev:ppc64el (1.74.0-3ubuntu2) ... Setting up groff-base (1.22.4-5) ... Setting up libklu1:ppc64el (1:5.8.1+dfsg-2) ... Setting up libccolamd2:ppc64el (1:5.8.1+dfsg-2) ... Setting up libcholmod3:ppc64el (1:5.8.1+dfsg-2) ... Setting up python3.9 (3.9.1-1) ... Setting up automake (1:1.16.3-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libspqr2:ppc64el (1:5.8.1+dfsg-2) ... Setting up libhx509-5-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.9.1-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libboost-iostreams1.74-dev:ppc64el (1.74.0-3ubuntu2) ... Setting up libumfpack5:ppc64el (1:5.8.1+dfsg-2) ... Setting up libboost-serialization-dev:ppc64el (1.74.0.3ubuntu2) ... Setting up libkrb5-26-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up libsuitesparse-dev:ppc64el (1:5.8.1+dfsg-2) ... Setting up libboost-iostreams-dev:ppc64el (1.74.0.3ubuntu2) ... Setting up libheimntlm0-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:ppc64el (7.7.0+dfsg-2) ... Setting up liblpsolve55-dev (5.5.2.5-2) ... Setting up libldap-2.4-2:ppc64el (2.4.53+dfsg-1ubuntu5) ... Setting up libcurl3-gnutls:ppc64el (7.72.0-1ubuntu1) ... Setting up libcurl4-gnutls-dev:ppc64el (7.72.0-1ubuntu1) ... Setting up libhts3:ppc64el (1.11-4) ... Setting up libhts-dev:ppc64el (1.11-4) ... Setting up samtools (1.11-1) ... Setting up rake (13.0.1-4) ... Setting up ruby-rubygems (3.2.0~rc.2-5) ... Setting up libruby2.7:ppc64el (2.7.2-3) ... Setting up dh-autoreconf (19) ... Setting up ruby2.7 (2.7.2-3) ... Setting up debhelper (13.3ubuntu4) ... Setting up ruby (1:2.7+2) ... Setting up ruby-asciidoctor (2.0.12-1) ... Setting up asciidoctor (2.0.12-1) ... Setting up sbuild-build-depends-augustus-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-128-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.35.50.20201218-1ubuntu3 dpkg-dev_1.20.5ubuntu3 g++-10_10.2.1-2ubuntu3 gcc-10_10.2.1-2ubuntu3 libc6-dev_2.32-0ubuntu6 libstdc++-10-dev_10.2.1-2ubuntu3 libstdc++6_10.2.1-2ubuntu3 linux-libc-dev_5.8.0-34.37+21.04.1 Package versions: adduser_3.118ubuntu4 advancecomp_2.1-2.1build1 apt_2.1.15 asciidoctor_2.0.12-1 autoconf_2.69-14 automake_1:1.16.3-1ubuntu1 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1-1ubuntu1 binutils_2.35.50.20201218-1ubuntu3 binutils-common_2.35.50.20201218-1ubuntu3 binutils-powerpc64le-linux-gnu_2.35.50.20201218-1ubuntu3 bsdextrautils_2.36.1-1ubuntu2 bsdutils_1:2.36.1-1ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-4ubuntu2 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.1-2ubuntu3 dash_0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 debconf_1.5.74 debhelper_13.3ubuntu4 debianutils_4.11.2 default-libmysqlclient-dev_1.0.5ubuntu2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.5ubuntu3 dpkg-dev_1.20.5ubuntu3 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.7.0-1ubuntu2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.1-2ubuntu3 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.1-2ubuntu3 gcc-10-base_10.2.1-2ubuntu3 gettext_0.21-3 gettext-base_0.21-3 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 icu-devtools_67.1-5 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-9 libamd2_1:5.8.1+dfsg-2 libapparmor1_3.0.0-0ubuntu5 libapt-pkg6.0_2.1.15 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan6_10.2.1-2ubuntu3 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.3-7.1 libatomic1_10.2.1-2ubuntu3 libattr1_1:2.4.48-6 libaudit-common_1:2.8.5-3ubuntu3 libaudit1_1:2.8.5-3ubuntu3 libbamtools-dev_2.5.1+dfsg-7build1 libbamtools2.5.1_2.5.1+dfsg-7build1 libbinutils_2.35.50.20201218-1ubuntu3 libblas-dev_3.9.0-3ubuntu1 libblas3_3.9.0-3ubuntu1 libblkid1_2.36.1-1ubuntu2 libboost-iostreams-dev_1.74.0.3ubuntu2 libboost-iostreams1.74-dev_1.74.0-3ubuntu2 libboost-iostreams1.74.0_1.74.0-3ubuntu2 libboost-regex1.74-dev_1.74.0-3ubuntu2 libboost-regex1.74.0_1.74.0-3ubuntu2 libboost-serialization-dev_1.74.0.3ubuntu2 libboost-serialization1.74-dev_1.74.0-3ubuntu2 libboost-serialization1.74.0_1.74.0-3ubuntu2 libboost1.74-dev_1.74.0-3ubuntu2 libbrotli1_1.0.9-2build2 libbtf1_1:5.8.1+dfsg-2 libbz2-1.0_1.0.8-4ubuntu2 libbz2-dev_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu6 libc-dev-bin_2.32-0ubuntu6 libc6_2.32-0ubuntu6 libc6-dev_2.32-0ubuntu6 libcamd2_1:5.8.1+dfsg-2 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1 libcc1-0_10.2.1-2ubuntu3 libccolamd2_1:5.8.1+dfsg-2 libcholmod3_1:5.8.1+dfsg-2 libcolamd2_1:5.8.1+dfsg-2 libcom-err2_1.45.6-1ubuntu1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.4-1ubuntu1 libctf-nobfd0_2.35.50.20201218-1ubuntu3 libctf0_2.35.50.20201218-1ubuntu3 libcurl3-gnutls_7.72.0-1ubuntu1 libcurl4-gnutls-dev_7.72.0-1ubuntu1 libcxsparse3_1:5.8.1+dfsg-2 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.255ubuntu1 libdebhelper-perl_13.3ubuntu4 libdeflate-dev_1.6-1 libdeflate0_1.6-1 libdevmapper1.02.1_2:1.02.167-1ubuntu4 libdpkg-perl_1.20.5ubuntu3 libelf1_0.182-2 libexpat1_2.2.10-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.3-1.1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.1-2ubuntu3 libgcc-s1_10.2.1-2ubuntu3 libgcrypt20_1.8.7-2ubuntu1 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.1-2ubuntu3 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.1-2ubuntu3 libgpg-error0_1.38-2 libgraphblas3_1:5.8.1+dfsg-2 libgsl-dev_2.6+dfsg-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libgssapi-krb5-2_1.17-10ubuntu1 libgssapi3-heimdal_7.7.0+dfsg-2 libhcrypto4-heimdal_7.7.0+dfsg-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.6-2 libhts-dev_1.11-4 libhts3_1.11-4 libhx509-5-heimdal_7.7.0+dfsg-2 libicu-dev_67.1-5 libicu67_67.1-5 libidn2-0_2.3.0-4 libip4tc2_1.8.5-3ubuntu4 libisl22_0.22.1-1 libisl23_0.23-1 libitm1_10.2.1-2ubuntu3 libjson-c5_0.15-1 libk5crypto3_1.17-10ubuntu1 libkeyutils1_1.6.1-2ubuntu1 libklu1_1:5.8.1+dfsg-2 libkmod2_27+20200310-2ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.17-10ubuntu1 libkrb5support0_1.17-10ubuntu1 liblapack-dev_3.9.0-3ubuntu1 liblapack3_3.9.0-3ubuntu1 libldap-2.4-2_2.4.53+dfsg-1ubuntu5 libldl2_1:5.8.1+dfsg-2 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblpsolve55-dev_5.5.2.5-2 liblsan0_10.2.1-2ubuntu3 liblz4-1_1.9.3-0ubuntu1 liblzma-dev_5.2.4-1ubuntu1 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmetis5_5.1.0.dfsg-7 libmongoose2_1:5.8.1+dfsg-2 libmount1_2.36.1-1ubuntu2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmysql++-dev_3.2.5-2 libmysql++3v5_3.2.5-2 libmysqlclient-dev_8.0.22-0ubuntu0.20.10.2 libmysqlclient21_8.0.22-0ubuntu0.20.10.2 libncurses-dev_6.2+20201114-2 libncurses5-dev_6.2+20201114-2 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.35-2ubuntu1 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libperl5.32_5.32.0-6 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libpsl5_0.21.0-1.1ubuntu1 libpython3-stdlib_3.9.1-1 libpython3.9-minimal_3.9.1-1 libpython3.9-stdlib_3.9.1-1 libquadmath0_10.2.1-2ubuntu3 librbio2_1:5.8.1+dfsg-2 libreadline8_8.1-1 libroken18-heimdal_7.7.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libruby2.7_2.7.2-3 libsasl2-2_2.1.27+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27+dfsg-2ubuntu1 libseccomp2_2.4.3-1ubuntu6 libselinux1_3.1-2build2 libsemanage-common_3.1-1build2 libsemanage1_3.1-1build2 libsepol1_3.1-1 libsigsegv2_2.12-3 libsliplu1_1:5.8.1+dfsg-2 libsmartcols1_2.36.1-1ubuntu2 libspqr2_1:5.8.1+dfsg-2 libsqlite3-0_3.34.0-1 libsqlite3-dev_3.34.0-1 libss2_1.45.6-1ubuntu1 libssh-4_0.9.5-1 libssl-dev_1.1.1f-1ubuntu5 libssl1.1_1.1.1f-1ubuntu5 libstdc++-10-dev_10.2.1-2ubuntu3 libstdc++6_10.2.1-2ubuntu3 libsub-override-perl_0.09-2 libsuitesparse-dev_1:5.8.1+dfsg-2 libsuitesparseconfig5_1:5.8.1+dfsg-2 libsystemd0_247.1-4ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-14 libtsan0_10.2.1-2ubuntu3 libubsan1_10.2.1-2ubuntu3 libuchardet0_0.0.7-1 libudev1_247.1-4ubuntu1 libumfpack5_1:5.8.1+dfsg-2 libunistring2_0.9.10-4 libuuid1_2.36.1-1ubuntu2 libwind0-heimdal_7.7.0+dfsg-2 libxml2_2.9.10+dfsg-6.3build1 libxxhash0_0.8.0-1 libyaml-0-2_0.2.2-1 libzstd1_1.4.8+dfsg-1 linux-libc-dev_5.8.0-34.37+21.04.1 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu7 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 lzma-dev_9.22-2.2 m4_1.4.18-4 mailcap_3.67ubuntu1 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_1.0.1ubuntu1 mime-support_3.66 mount_2.36.1-1ubuntu2 mysql-common_5.8+1.0.5ubuntu2 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 openssl_1.1.1f-1ubuntu5 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu7 patch_2.7.6-6 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 python3_3.9.1-1 python3-minimal_3.9.1-1 python3.9_3.9.1-1 python3.9-minimal_3.9.1-1 rake_13.0.1-4 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 ruby_1:2.7+2 ruby-asciidoctor_2.0.12-1 ruby-minitest_5.13.0-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.7-1 ruby-rubygems_3.2.0~rc.2-5 ruby-test-unit_3.3.5-1 ruby-xmlrpc_0.3.0-2 ruby2.7_2.7.2-3 rubygems-integration_1.17.3 samtools_1.11-1 sbuild-build-depends-augustus-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_247.1-4ubuntu1 systemd-sysv_247.1-4ubuntu1 systemd-timesyncd_247.1-4ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.32+dfsg-1 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36.1-1ubuntu2 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Jan 3 15:35:33 2021 UTC gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./augustus_3.4.0+dfsg2-2.dsc dpkg-source: info: extracting augustus in /<>/augustus-3.4.0+dfsg2 dpkg-source: info: unpacking augustus_3.4.0+dfsg2.orig.tar.xz dpkg-source: info: unpacking augustus_3.4.0+dfsg2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying search_config_path dpkg-source: info: applying set_installdir dpkg-source: info: applying interpreter_paths.patch dpkg-source: info: applying switch_cgp_testing_off.patch dpkg-source: info: applying disable-compare.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20761513 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20761513 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20761513 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package augustus dpkg-buildpackage: info: source version 3.4.0+dfsg2-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/augustus-3.4.0+dfsg2' /usr/bin/make -C auxprogs/bam2hints clean make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/bam2hints' rm -f bam2hints.o bam2hints ../../bin/bam2hints make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/bam2hints' /usr/bin/make -C auxprogs/homGeneMapping clean make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/homGeneMapping' cd src; make clean make[3]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/homGeneMapping/src' rm -f homGeneMapping gene.o genome.o sqliteDB.o rm -f ../../../bin/homGeneMapping make[3]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/homGeneMapping/src' cd ../..; tests/auxprogs/homGeneMapping/test_homGeneMapping.py --clean make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/homGeneMapping' /usr/bin/make -C auxprogs/joingenes clean make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/joingenes' rm -rf *.o joingenes; rm -rf ../../bin/joingenes make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/joingenes' /usr/bin/make -C auxprogs/aln2wig clean make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/aln2wig' rm -f aln2wig aln2wig.o; rm -f ../../bin/aln2wig make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/aln2wig' /usr/bin/make -C auxprogs/bam2wig clean make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/bam2wig' rm -f bam2wig bam2wig.o bam2wig rm -f ../../bin/bam2wig cd ../..; tests/auxprogs/bam2wig/test_bam2wig.py --clean make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/bam2wig' /usr/bin/make -C auxprogs/compileSpliceCands clean make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/compileSpliceCands' rm -f compileSpliceCands compileSpliceCands.o ../../bin/compileSpliceCands list.o make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/compileSpliceCands' /usr/bin/make -C auxprogs/filterBam clean make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/filterBam' (cd src; make clean;) make[3]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/filterBam/src' rm -f *~ filterBam.o MatePairs.o getReferenceName.o initOptions.o SingleAlignment.o printElapsedTime.o sumMandIOperations.o sumDandIOperations.o PairednessCoverage.o rm -f filterBam rm -f ../../../bin/filterBam make[3]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/filterBam/src' make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/filterBam' rm -rf bin rm -f debian/*substvars rm -f debian/mansrc/*.1 find . -name "__pycache__" | xargs -r rm -r find src -name "*.o" | xargs -r rm find auxprogs -name "*.o" | xargs -r rm rm -f auxprogs/utrrnaseq/Debug/utrrnaseq src/augustus src/etraining src/fastBlockSearch src/getSeq src/load2db src/load2sqlitedb src/pp_simScore src/prepareAlign make[1]: Leaving directory '/<>/augustus-3.4.0+dfsg2' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>/augustus-3.4.0+dfsg2' mkdir -p bin /usr/bin/make -C auxprogs/aln2wig make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/aln2wig' cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -ansi -pedantic -O2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -c aln2wig.c In file included from /usr/include/string.h:519, from aln2wig.c:15: In function ‘strncpy’, inlined from ‘main’ at aln2wig.c:454:6: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4095 bytes from a string of length 4095 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at aln2wig.c:460:6: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4095 bytes from a string of length 4095 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at aln2wig.c:327:6: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4095 bytes from a string of length 4095 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at aln2wig.c:334:6: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4095 bytes from a string of length 4095 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -Wall -Wno-sign-compare -ansi -pedantic -O2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o aln2wig aln2wig.o mkdir -p ../../bin cp aln2wig ../../bin make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/aln2wig' /usr/bin/make -C auxprogs/bam2hints make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/bam2hints' g++ -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c bam2hints.cc -o bam2hints.o -I/usr/include/bamtools g++ -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o bam2hints bam2hints.o -lbamtools -lz mkdir -p ../../bin cp bam2hints ../../bin make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/bam2hints' /usr/bin/make -C auxprogs/bam2wig make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/bam2wig' cc -Wall -O2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bam2wig.c -o bam2wig.o -I/usr/include/htslib cc -Wall -O2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now bam2wig.o -o bam2wig -lhts -lz -lpthread mkdir -p ../../bin cp bam2wig ../../bin/bam2wig make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/bam2wig' /usr/bin/make -C auxprogs/compileSpliceCands make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/compileSpliceCands' cc -Wall -pedantic -ansi -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c compileSpliceCands.c In file included from /usr/include/string.h:519, from compileSpliceCands.c:12: In function ‘strncat’, inlined from ‘getChromosome’ at compileSpliceCands.c:216:2: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin_strncat’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compileSpliceCands.c: In function ‘getChromosome’: compileSpliceCands.c:216:2: note: length computed here 216 | strncat(checkstring,chromosomename,strlen(chromosomename)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from compileSpliceCands.c:12: In function ‘strncpy’, inlined from ‘parseLine’ at compileSpliceCands.c:292:2: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compileSpliceCands.c: In function ‘parseList’: compileSpliceCands.c:344:35: warning: ‘left’ may be used uninitialized in this function [-Wmaybe-uninitialized] 344 | findPossibleSpliceSites(left->name,actualChromosome,left->startPos-maxSpliceSiteDiff,left->endPos+maxSpliceSiteDiff,right->startPos-maxSpliceSiteDiff,right->startPos+maxSpliceSiteDiff,left->strand,right->strand); | ~~~~^~~~~~ compileSpliceCands.c: In function ‘main’: compileSpliceCands.c:563:3: warning: ‘chromosomeLength’ may be used uninitialized in this function [-Wmaybe-uninitialized] 563 | parseList(&L,actualChromosome,chromosomeLength,oldname,maxSpliceSiteDiff,threshold,maxIntronLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o list.o list.c cc -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o compileSpliceCands compileSpliceCands.o list.o cp compileSpliceCands ../../bin/compileSpliceCands make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/compileSpliceCands' /usr/bin/make -C auxprogs/filterBam make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/filterBam' (cd src;make) make[3]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/filterBam/src' g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c filterBam.cc -o filterBam.o -I/usr/include/bamtools -Iheaders -I./bamtools In file included from /usr/include/bamtools/api/BamReader.h:14, from filterBam.cc:14: /usr/include/bamtools/api/BamAlignment.h: In function ‘BamTools::BamAlignment& BamTools::BamAlignment::operator=(const BamTools::BamAlignment&)’: /usr/include/bamtools/api/BamAlignment.h:33:18: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 33 | class API_EXPORT BamAlignment | ^~~~~~~~~~~~ g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/MatePairs.cc -o MatePairs.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/getReferenceName.cc -o getReferenceName.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/initOptions.cc -o initOptions.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/SingleAlignment.cc -o SingleAlignment.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/printElapsedTime.cc -o printElapsedTime.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/sumMandIOperations.cc -o sumMandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/sumDandIOperations.cc -o sumDandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/PairednessCoverage.cc -o PairednessCoverage.o -I/usr/include/bamtools -Iheaders -I./bamtools functions/PairednessCoverage.cc: In copy constructor ‘PairednessCoverage::PairednessCoverage(const PairednessCoverage&)’: functions/PairednessCoverage.cc:47:1: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 47 | PairednessCoverage::PairednessCoverage(const PairednessCoverage ©in) // Copy constructor to handle pass by value. | ^~~~~~~~~~~~~~~~~~ g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now filterBam.o MatePairs.o getReferenceName.o initOptions.o SingleAlignment.o printElapsedTime.o sumMandIOperations.o sumDandIOperations.o PairednessCoverage.o -o filterBam -lbamtools -lz filterBam compiled with BAMTOOLS=/usr/include/bamtools mkdir -p ../../../bin mv filterBam ../../../bin/filterBam make[3]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/filterBam/src' make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/filterBam' /usr/bin/make -C auxprogs/homGeneMapping/src make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/homGeneMapping/src' g++ -c -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST -DM_SQLITE -o gene.o gene.cc -I../include g++ -c -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST -DM_SQLITE -o genome.o genome.cc -I../include g++ -c -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST -DM_SQLITE -o sqliteDB.o sqliteDB.cc -I../include g++ -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST -DM_SQLITE -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o homGeneMapping main.cc gene.o genome.o sqliteDB.o -I../include -lsqlite3 mkdir -p ../../../bin/ cp homGeneMapping ../../../bin/homGeneMapping make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/homGeneMapping/src' /usr/bin/make -C auxprogs/joingenes make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/joingenes' g++ -c -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 joingenes.cpp In file included from joingenes.cpp:10: jg_transcript.h: In member function ‘void Transcript::exontoutr()’: jg_transcript.h:460:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 460 | void exontoutr(){ | ^~~~~~~~~ g++ -c -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 jg_transcript.cpp In file included from jg_transcript.cpp:1: jg_transcript.h: In function ‘std::__cxx11::list<_Tp, _Alloc>& std::__cxx11::list<_Tp, _Alloc>::operator=(const std::__cxx11::list<_Tp, _Alloc>&) [with _Tp = Exon; _Alloc = std::allocator]’: jg_transcript.h:50:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 50 | class Exon{ | ^~~~ g++ -c -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 jg_ios.cpp In file included from /usr/include/string.h:519, from jg_transcript.h:5, from jg_ios.cpp:1: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘void load(std::unordered_map, Gene*>&, std::string&, int&, std::unordered_map, bool>&, Properties&)’ at jg_ios.cpp:251:14: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:91:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output may be truncated copying 1014 bytes from a string of length 1023 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘void load(std::unordered_map, Gene*>&, std::string&, int&, std::unordered_map, bool>&, Properties&)’ at jg_ios.cpp:79:14: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:91:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output may be truncated copying 1014 bytes from a string of length 1023 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘void load(std::unordered_map, Gene*>&, std::string&, int&, std::unordered_map, bool>&, Properties&)’ at jg_ios.cpp:148:9: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:91:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 300 equals destination size [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ jg_ios.cpp: In function ‘void load(std::unordered_map, Gene*>&, std::string&, int&, std::unordered_map, bool>&, Properties&)’: jg_ios.cpp:48:6: note: the layout of aggregates containing vectors with 4-byte alignment has changed in GCC 5 48 | void load(unordered_map &geneMap, string &filename, int &priority, unordered_map &taxaMap, Properties &properties) | ^~~~ g++ -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now joingenes.o jg_transcript.o jg_ios.o -o joingenes mkdir -p ../../bin/ cp joingenes ../../bin/ make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/joingenes' dh_auto_build make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/augustus-3.4.0+dfsg2' mkdir -p bin cd src && make make[3]: Entering directory '/<>/augustus-3.4.0+dfsg2/src' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o genbank.o genbank.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o properties.o properties.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o pp_profile.o pp_profile.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o pp_hitseq.o pp_hitseq.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o pp_scoring.o pp_scoring.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ In file included from pp_scoring.cc:10: ../include/pp_scoring.hh: In member function ‘virtual void PP::SingleTargetExonScorer::addMatches(int, int)’: ../include/pp_scoring.hh:540:15: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 540 | virtual void addMatches(int beginOfBioExon, int endOfBioExon) { | ^~~~~~~~~~ In file included from /usr/include/boost/iostreams/detail/adapter/range_adapter.hpp:24, from /usr/include/boost/iostreams/detail/push.hpp:19, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from ../include/genbank.hh:20, from genbank.cc:10: /usr/include/boost/throw_exception.hpp: In member function ‘void boost::wrapexcept::rethrow() const [with E = boost::iostreams::gzip_error]’: /usr/include/boost/throw_exception.hpp:154:18: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 154 | virtual void rethrow() const BOOST_OVERRIDE | ^~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o statemodel.o statemodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o namgene.o namgene.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o types.o types.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o gene.o gene.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o evaluation.o evaluation.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ namgene.cc: In member function ‘int NAMGene::tryFindCutEndPoint(StatePath*, int, int, std::__cxx11::list*, bool)’: namgene.cc:1144:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1144 | int NAMGene::tryFindCutEndPoint(StatePath *condensedExamPath, int examIntervalStart, int examIntervalEnd, list *groupGaps, bool onlyInternalIR){ | ^~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o motif.o motif.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ In file included from gene.cc:8: ../include/gene.hh: In member function ‘void StatePath::pushIntron(int, int, int, bool)’: ../include/gene.hh:133:17: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 133 | framemod(0) | ^ evaluation.cc: In member function ‘void Evaluation::evaluateOnUTRLevel(Transcript*, Transcript*)’: evaluation.cc:539:6: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 539 | void Evaluation::evaluateOnUTRLevel(Transcript* const predictedGeneList, Transcript* const annotatedGeneList){ | ^~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o geneticcode.o geneticcode.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o hints.o hints.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o extrinsicinfo.o extrinsicinfo.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ In file included from /usr/include/string.h:519, from /usr/include/c++/10/cstring:42, from ../include/types.hh:34, from ../include/hints.hh:12, from hints.cc:10: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘std::istream& operator>>(std::istream&, Feature&)’ at hints.cc:82:9: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:91:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output may be truncated copying 1014 bytes from a string of length 1023 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o projectio.o projectio.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o intronmodel.o intronmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o exonmodel.o exonmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ In file included from ../include/extrinsicinfo.hh:15, from extrinsicinfo.cc:10: ../include/hints.hh: In copy constructor ‘Feature::Feature(const Feature&)’: ../include/hints.hh:60:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 60 | class Feature { | ^~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o igenicmodel.o igenicmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ intronmodel.cc: In static member function ‘static void IntronModel::updateToLocalGC(int, int)’: intronmodel.cc:495:6: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 495 | void IntronModel::updateToLocalGC(int from, int to){ | ^~~~~~~~~~~ exonmodel.cc: In static member function ‘static void ExonModel::updateToLocalGC(int, int)’: exonmodel.cc:878:6: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 878 | void ExonModel::updateToLocalGC(int from, int to){ | ^~~~~~~~~ igenicmodel.cc: In static member function ‘static void IGenicModel::updateToLocalGC(int, int)’: igenicmodel.cc:69:6: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 69 | void IGenicModel::updateToLocalGC(int from, int to){ | ^~~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o utrmodel.o utrmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o merkmal.o merkmal.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o vitmatrix.o vitmatrix.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o lldouble.o lldouble.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o mea.o mea.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ utrmodel.cc: In static member function ‘static void UtrModel::updateToLocalGC(int, int)’: utrmodel.cc:768:6: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 768 | void UtrModel::updateToLocalGC(int from, int to){ | ^~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o graph.o graph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ mea.cc: In function ‘void addIntronToGene(Transcript*, Node*, Node*)’: mea.cc:242:6: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 242 | void addIntronToGene(Transcript* tx, Node* predExon, Node* succExon){ | ^~~~~~~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o meaPath.o meaPath.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ graph.cc: In member function ‘State* Node::getIntron(Node*)’: graph.cc:1264:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1264 | State* Node::getIntron(Node* succ){ | ^~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o exoncand.o exoncand.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o randseqaccess.o randseqaccess.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o fasta.o fasta.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o ncmodel.o ncmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o parser/parse.o parser/parse.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o scanner/lex.o scanner/lex.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o genomicMSA.o genomicMSA.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o geneMSA.o geneMSA.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ In file included from ../include/gene.hh:14, from ../include/randseqaccess.hh:12, from randseqaccess.cc:10: ../include/hints.hh: In copy constructor ‘Feature::Feature(const Feature&)’: ../include/hints.hh:60:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 60 | class Feature { | ^~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o contTimeMC.o contTimeMC.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o codonevo.o codonevo.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o compgenepred.o compgenepred.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o phylotree.o phylotree.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ In file included from /usr/include/c++/10/vector:72, from ../include/types.hh:36, from ../include/geneticcode.hh:12, from geneMSA.cc:10: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair >, cumValues>&}; _Tp = std::pair, cumValues>; _Alloc = std::allocator, cumValues> >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o orthograph.o orthograph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o orthoexon.o orthoexon.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o alignment.o alignment.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ orthograph.cc: In member function ‘void OrthoGraph::buildGeneList(std::vector*>&)’: orthograph.cc:22:6: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 22 | void OrthoGraph::buildGeneList(vector< list* > &genelist) { | ^~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o speciesgraph.o speciesgraph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o codonMSA.o codonMSA.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ speciesgraph.cc: In member function ‘Node* SpeciesGraph::addNode(ExonCandidate*)’: speciesgraph.cc:217:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 217 | Node* SpeciesGraph::addNode(ExonCandidate *exon){ | ^~~~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o train_logReg_param.o train_logReg_param.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o tokenizer.o tokenizer.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o sqliteDB.o sqliteDB.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o commontrain.o commontrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o igenictrain.o igenictrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o introntrain.o introntrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o exontrain.o exontrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ In file included from ../include/statemodel.hh:14, from ../include/igenicmodel.hh:11, from igenictrain.cc:10: ../include/merkmal.hh: In static member function ‘static void IGenicModel::storeGCPars(int)’: ../include/merkmal.hh:50:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 50 | class MMGroup { | ^~~~~~~ In file included from ../include/statemodel.hh:14, from ../include/intronmodel.hh:11, from introntrain.cc:8: ../include/merkmal.hh: In static member function ‘static void IntronModel::storeGCPars(int)’: ../include/merkmal.hh:50:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 50 | class MMGroup { | ^~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o utrtrain.o utrtrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ In file included from ../include/statemodel.hh:14, from ../include/exonmodel.hh:11, from exontrain.cc:8: ../include/merkmal.hh: In static member function ‘static void ExonModel::storeGCPars(int)’: ../include/merkmal.hh:50:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 50 | class MMGroup { | ^~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o dummy.o dummy.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o prepareAlign pp_prepare_align.cc g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -o pp_fastBlockSearcher.o pp_fastBlockSearcher.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ In file included from ../include/statemodel.hh:14, from ../include/utrmodel.hh:11, from utrtrain.cc:10: ../include/merkmal.hh: In static member function ‘static void UtrModel::storeGCPars(int)’: ../include/merkmal.hh:50:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 50 | class MMGroup { | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o pp_simScore pp_simscore.cc fasta.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o load2db load2db.cc fasta.o hints.o types.o properties.o lldouble.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 cp prepareAlign ../bin/ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o getSeq getSeq.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o dummy.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o load2sqlitedb load2sqlitedb.cc fasta.o hints.o types.o properties.o lldouble.o sqliteDB.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 cp load2sqlitedb ../bin/ echo "-Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE" > cxxflags g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o dummy.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 cp load2db ../bin/ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o etraining etraining.cc commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 cp pp_simScore ../bin/ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastBlockSearch fastBlockSearch.cc pp_fastBlockSearcher.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 cp getSeq ../bin/ cp fastBlockSearch ../bin/ cp etraining ../bin/ cp augustus ../bin/ make[3]: Leaving directory '/<>/augustus-3.4.0+dfsg2/src' cd auxprogs && make make[3]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs' cd aln2wig; make; make[4]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/aln2wig' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[4]: 'aln2wig' is up to date. make[4]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/aln2wig' cd bam2hints; make; make[4]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/bam2hints' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[4]: 'bam2hints' is up to date. make[4]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/bam2hints' cd compileSpliceCands; make; make[4]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/compileSpliceCands' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[4]: 'compileSpliceCands' is up to date. make[4]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/compileSpliceCands' cd filterBam; make; make[4]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/filterBam' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. (cd src;make) make[5]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/filterBam/src' g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.4.0+dfsg2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now filterBam.o MatePairs.o getReferenceName.o initOptions.o SingleAlignment.o printElapsedTime.o sumMandIOperations.o sumDandIOperations.o PairednessCoverage.o -o filterBam -lbamtools -lz filterBam compiled with BAMTOOLS=/usr/include/bamtools mkdir -p ../../../bin mv filterBam ../../../bin/filterBam make[5]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/filterBam/src' make[4]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/filterBam' cd homGeneMapping; make; make[4]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/homGeneMapping' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. (cd src; make) make[5]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/homGeneMapping/src' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/homGeneMapping/src' make[4]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/homGeneMapping' cd joingenes; make; make[4]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/joingenes' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/joingenes' cd utrrnaseq/Debug; make all; make[4]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/utrrnaseq/Debug' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. Building file: ../src/Compute_UTRs.cpp Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Compute_UTRs.d" -MT"src/Compute_UTRs.o" -o "src/Compute_UTRs.o" "../src/Compute_UTRs.cpp" Finished building: ../src/Compute_UTRs.cpp Building file: ../src/Coord_Transform.cpp Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Coord_Transform.d" -MT"src/Coord_Transform.o" -o "src/Coord_Transform.o" "../src/Coord_Transform.cpp" Finished building: ../src/Coord_Transform.cpp Building file: ../src/Genomic_Data.cpp Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Genomic_Data.d" -MT"src/Genomic_Data.o" -o "src/Genomic_Data.o" "../src/Genomic_Data.cpp" Finished building: ../src/Genomic_Data.cpp Building file: ../src/Splice_Sites.cpp Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Splice_Sites.d" -MT"src/Splice_Sites.o" -o "src/Splice_Sites.o" "../src/Splice_Sites.cpp" Finished building: ../src/Splice_Sites.cpp Building file: ../src/Supporting_Methods.cpp Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Supporting_Methods.d" -MT"src/Supporting_Methods.o" -o "src/Supporting_Methods.o" "../src/Supporting_Methods.cpp" Finished building: ../src/Supporting_Methods.cpp Building file: ../src/Test.cpp Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Test.d" -MT"src/Test.o" -o "src/Test.o" "../src/Test.cpp" Finished building: ../src/Test.cpp Building file: ../src/UTRs.cpp Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/UTRs.d" -MT"src/UTRs.o" -o "src/UTRs.o" "../src/UTRs.cpp" Finished building: ../src/UTRs.cpp Building file: ../src/main.cpp Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/main.d" -MT"src/main.o" -o "src/main.o" "../src/main.cpp" Finished building: ../src/main.cpp Building target: utrrnaseq Invoking: GCC C++ Linker g++ -o "utrrnaseq" ./src/Compute_UTRs.o ./src/Coord_Transform.o ./src/Genomic_Data.o ./src/Splice_Sites.o ./src/Supporting_Methods.o ./src/Test.o ./src/UTRs.o ./src/main.o Finished building target: utrrnaseq make[4]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/utrrnaseq/Debug' cd bam2wig; make; make[4]: Entering directory '/<>/augustus-3.4.0+dfsg2/auxprogs/bam2wig' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[4]: 'bam2wig' is up to date. make[4]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs/bam2wig' make[3]: Leaving directory '/<>/augustus-3.4.0+dfsg2/auxprogs' make[2]: Leaving directory '/<>/augustus-3.4.0+dfsg2' asciidoctor -a docdate='' -b manpage --destination-dir=debian/mansrc/ mansrc/*adoc make[1]: Leaving directory '/<>/augustus-3.4.0+dfsg2' dh_auto_test -a make -j4 test make[1]: Entering directory '/<>/augustus-3.4.0+dfsg2' cd tests/examples && ./testcases.py --html test_utr_on (__main__.TestAugustus) ... ok test_hints_MPE (__main__.TestAugustus) ... ok test_training_new_species (__main__.TestAugustus) ... ok test_ab_initio_prediction (__main__.TestAugustus) ... ok test_format_and_error_out (__main__.TestAugustus) ... ok test_cgp (__main__.TestAugustus) ... ok test_cgp_sqlite (__main__.TestAugustus) ... ok test_cgp_sqlite_hints (__main__.TestAugustus) ... ok ---------------------------------------------------------------------- Ran 8 tests in 451.776s OK Removing generated test files... ---------------------------------------------------------------------- Executing small test suite ---------------------------------------------------------------------- Creating SQLite database for cgp test cases... tests/auxprogs/bam2wig/test_bam2wig.py --html test_bam2wig (__main__.TestBam2Wig) ... ok test_bam2wig_region (__main__.TestBam2Wig) ... ok ---------------------------------------------------------------------- Ran 2 tests in 0.019s OK make[1]: Leaving directory '/<>/augustus-3.4.0+dfsg2' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>/augustus-3.4.0+dfsg2' mkdir -p debian/augustus/usr/bin install bin/* debian/augustus/usr/bin install auxprogs/bam2wig/bam2wig \ debian/augustus/usr/bin install auxprogs/compileSpliceCands/compileSpliceCands \ debian/augustus/usr/bin install auxprogs/homGeneMapping/src/homGeneMapping \ debian/augustus/usr/bin install auxprogs/joingenes/joingenes \ debian/augustus/usr/bin mkdir -p debian/augustus/usr/share/augustus cp -r scripts debian/augustus/usr/share/augustus chmod -R -x debian/augustus/usr/share/augustus/scripts/* rm -rf debian/augustus/usr/share/augustus/scripts/*.patch \ debian/augustus/usr/share/augustus/scripts/executeTestCGP.py \ debian/augustus/usr/share/augustus/scripts/*.txt chmod +x debian/augustus/usr/share/augustus/scripts/checkUTR \ debian/augustus/usr/share/augustus/scripts/*.pl* mkdir -p debian/augustus-doc/usr/share/doc/augustus cp README* debian/augustus-doc/usr/share/doc/augustus cp docs/*.txt debian/augustus-doc/usr/share/doc/augustus cp docs/RUNNING* debian/augustus-doc/usr/share/doc/augustus cp docs/README* debian/augustus-doc/usr/share/doc/augustus cp docs/EXONCAND-MSAS-CGP.md \ debian/augustus-doc/usr/share/doc/augustus cp -r docs/tutorial \ debian/augustus-doc/usr/share/doc/augustus cp -r docs/tutorial-cgp \ debian/augustus-doc/usr/share/doc/augustus mkdir -p debian/augustus-data/usr/share/augustus cp -r config debian/augustus-data/usr/share/augustus find debian/augustus-data/usr/share/augustus \ -type f -exec chmod -x {} \; make[1]: Leaving directory '/<>/augustus-3.4.0+dfsg2' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>/augustus-3.4.0+dfsg2' dh_installchangelogs -k docs/HISTORY.TXT make[1]: Leaving directory '/<>/augustus-3.4.0+dfsg2' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>/augustus-3.4.0+dfsg2' dh_compress -Xtutorial make[1]: Leaving directory '/<>/augustus-3.4.0+dfsg2' dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package augustus: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package augustus: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing augustus (in debian/augustus); do_strip: , oemstrip: pkgstriptranslations: processing augustus-dbgsym (in debian/.debhelper/augustus/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/augustus/DEBIAN/control, package augustus, directory debian/augustus .. removing usr/share/doc/augustus/changelog.gz pkgstripfiles: processing control file: debian/.debhelper/augustus/dbgsym-root/DEBIAN/control, package augustus-dbgsym, directory debian/.debhelper/augustus/dbgsym-root dpkg-deb: building package 'augustus-dbgsym' in 'debian/.debhelper/scratch-space/build-augustus/augustus-dbgsym_3.4.0+dfsg2-2_ppc64el.deb'. pkgstripfiles: Truncating usr/share/doc/augustus/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package augustus ... pkgstripfiles: No PNG files. dpkg-deb: building package 'augustus' in '../augustus_3.4.0+dfsg2-2_ppc64el.deb'. Renaming augustus-dbgsym_3.4.0+dfsg2-2_ppc64el.deb to augustus-dbgsym_3.4.0+dfsg2-2_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../augustus_3.4.0+dfsg2-2_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-01-03T23:39:15Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ augustus_3.4.0+dfsg2-2_ppc64el.changes: --------------------------------------- Format: 1.8 Date: Sun, 03 Jan 2021 16:10:48 +0100 Source: augustus Binary: augustus Architecture: ppc64el Version: 3.4.0+dfsg2-2 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: augustus - gene prediction in eukaryotic genomes Changes: augustus (3.4.0+dfsg2-2) unstable; urgency=medium . * Fix dversionmangle to allow for +dfsgX suffixes. * Run tests without --compare. This hopefully fixes FTBFS due to different results on different platforms, not matching the reference. Checksums-Sha1: 35a7e196ea03244820ed939dfcacf36c69435e0e 39520024 augustus-dbgsym_3.4.0+dfsg2-2_ppc64el.ddeb 3e9e3b86d9dc5af1f1219cf22aa73d4edf02a1c9 9536 augustus_3.4.0+dfsg2-2_ppc64el.buildinfo 85ff07e0815badfce5ee71f1e84a0443e6245423 1985996 augustus_3.4.0+dfsg2-2_ppc64el.deb Checksums-Sha256: 5e3c6897226771f24104a7842667cdb3c660d44e90d20eaeb97492ee1ad276ad 39520024 augustus-dbgsym_3.4.0+dfsg2-2_ppc64el.ddeb 7a1be8b01b8124abc121fb3707eb81bf31eed94535dd312e2a4800a12259cd0b 9536 augustus_3.4.0+dfsg2-2_ppc64el.buildinfo 469c27c56315f69162f1543557e9a3acd6d6729d4968d255880aafeee990ebe8 1985996 augustus_3.4.0+dfsg2-2_ppc64el.deb Files: dd23a3add810627a9480f71df9700984 39520024 debug optional augustus-dbgsym_3.4.0+dfsg2-2_ppc64el.ddeb 5033183757565cdc2c492f32f2869cf5 9536 science optional augustus_3.4.0+dfsg2-2_ppc64el.buildinfo 765815289708b550f9e17993b6fadfdc 1985996 science optional augustus_3.4.0+dfsg2-2_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: augustus Binary: augustus augustus-dbgsym Architecture: ppc64el Version: 3.4.0+dfsg2-2 Checksums-Md5: dd23a3add810627a9480f71df9700984 39520024 augustus-dbgsym_3.4.0+dfsg2-2_ppc64el.ddeb 765815289708b550f9e17993b6fadfdc 1985996 augustus_3.4.0+dfsg2-2_ppc64el.deb Checksums-Sha1: 35a7e196ea03244820ed939dfcacf36c69435e0e 39520024 augustus-dbgsym_3.4.0+dfsg2-2_ppc64el.ddeb 85ff07e0815badfce5ee71f1e84a0443e6245423 1985996 augustus_3.4.0+dfsg2-2_ppc64el.deb Checksums-Sha256: 5e3c6897226771f24104a7842667cdb3c660d44e90d20eaeb97492ee1ad276ad 39520024 augustus-dbgsym_3.4.0+dfsg2-2_ppc64el.ddeb 469c27c56315f69162f1543557e9a3acd6d6729d4968d255880aafeee990ebe8 1985996 augustus_3.4.0+dfsg2-2_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Sun, 03 Jan 2021 23:39:14 +0000 Build-Path: /<>/augustus-3.4.0+dfsg2 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: asciidoctor (= 2.0.12-1), autoconf (= 2.69-14), automake (= 1:1.16.3-1ubuntu1), autopoint (= 0.21-3), autotools-dev (= 20180224.1+nmu1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1-1ubuntu1), binutils (= 2.35.50.20201218-1ubuntu3), binutils-common (= 2.35.50.20201218-1ubuntu3), binutils-powerpc64le-linux-gnu (= 2.35.50.20201218-1ubuntu3), bsdextrautils (= 2.36.1-1ubuntu2), bsdutils (= 1:2.36.1-1ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), ca-certificates (= 20200601), coreutils (= 8.32-4ubuntu2), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.1-2ubuntu3), dash (= 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1), debconf (= 1.5.74), debhelper (= 13.3ubuntu4), debianutils (= 4.11.2), default-libmysqlclient-dev (= 1.0.5ubuntu2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu3), dpkg-dev (= 1.20.5ubuntu3), dwz (= 0.13+20201015-2), file (= 1:5.39-3), findutils (= 4.7.0-1ubuntu2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.1-2ubuntu3), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.1-2ubuntu3), gcc-10-base (= 10.2.1-2ubuntu3), gettext (= 0.21-3), gettext-base (= 0.21-3), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hostname (= 3.23), icu-devtools (= 67.1-5), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-9), libamd2 (= 1:5.8.1+dfsg-2), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.1-2ubuntu3), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 10.2.1-2ubuntu3), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:2.8.5-3ubuntu3), libaudit1 (= 1:2.8.5-3ubuntu3), libbamtools-dev (= 2.5.1+dfsg-7build1), libbamtools2.5.1 (= 2.5.1+dfsg-7build1), libbinutils (= 2.35.50.20201218-1ubuntu3), libblas-dev (= 3.9.0-3ubuntu1), libblas3 (= 3.9.0-3ubuntu1), libblkid1 (= 2.36.1-1ubuntu2), libboost-iostreams-dev (= 1.74.0.3ubuntu2), libboost-iostreams1.74-dev (= 1.74.0-3ubuntu2), libboost-iostreams1.74.0 (= 1.74.0-3ubuntu2), libboost-regex1.74-dev (= 1.74.0-3ubuntu2), libboost-regex1.74.0 (= 1.74.0-3ubuntu2), libboost-serialization-dev (= 1.74.0.3ubuntu2), libboost-serialization1.74-dev (= 1.74.0-3ubuntu2), libboost-serialization1.74.0 (= 1.74.0-3ubuntu2), libboost1.74-dev (= 1.74.0-3ubuntu2), libbrotli1 (= 1.0.9-2build2), libbtf1 (= 1:5.8.1+dfsg-2), libbz2-1.0 (= 1.0.8-4ubuntu2), libbz2-dev (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu6), libc-dev-bin (= 2.32-0ubuntu6), libc6 (= 2.32-0ubuntu6), libc6-dev (= 2.32-0ubuntu6), libcamd2 (= 1:5.8.1+dfsg-2), libcap-ng0 (= 0.7.9-2.2build1), libcap2 (= 1:2.44-1), libcc1-0 (= 10.2.1-2ubuntu3), libccolamd2 (= 1:5.8.1+dfsg-2), libcholmod3 (= 1:5.8.1+dfsg-2), libcolamd2 (= 1:5.8.1+dfsg-2), libcom-err2 (= 1.45.6-1ubuntu1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.35.50.20201218-1ubuntu3), libctf0 (= 2.35.50.20201218-1ubuntu3), libcurl3-gnutls (= 7.72.0-1ubuntu1), libcurl4-gnutls-dev (= 7.72.0-1ubuntu1), libcxsparse3 (= 1:5.8.1+dfsg-2), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.255ubuntu1), libdebhelper-perl (= 13.3ubuntu4), libdeflate-dev (= 1.6-1), libdeflate0 (= 1.6-1), libdpkg-perl (= 1.20.5ubuntu3), libelf1 (= 0.182-2), libexpat1 (= 2.2.10-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.1-2ubuntu3), libgcc-s1 (= 10.2.1-2ubuntu3), libgcrypt20 (= 1.8.7-2ubuntu1), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgfortran5 (= 10.2.1-2ubuntu3), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgnutls30 (= 3.6.15-4ubuntu2), libgomp1 (= 10.2.1-2ubuntu3), libgpg-error0 (= 1.38-2), libgraphblas3 (= 1:5.8.1+dfsg-2), libgsl-dev (= 2.6+dfsg-2), libgsl25 (= 2.6+dfsg-2), libgslcblas0 (= 2.6+dfsg-2), libgssapi-krb5-2 (= 1.17-10ubuntu1), libgssapi3-heimdal (= 7.7.0+dfsg-2), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.6-2), libhts-dev (= 1.11-4), libhts3 (= 1.11-4), libhx509-5-heimdal (= 7.7.0+dfsg-2), libicu-dev (= 67.1-5), libicu67 (= 67.1-5), libidn2-0 (= 2.3.0-4), libisl23 (= 0.23-1), libitm1 (= 10.2.1-2ubuntu3), libk5crypto3 (= 1.17-10ubuntu1), libkeyutils1 (= 1.6.1-2ubuntu1), libklu1 (= 1:5.8.1+dfsg-2), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.17-10ubuntu1), libkrb5support0 (= 1.17-10ubuntu1), liblapack-dev (= 3.9.0-3ubuntu1), liblapack3 (= 3.9.0-3ubuntu1), libldap-2.4-2 (= 2.4.53+dfsg-1ubuntu5), libldl2 (= 1:5.8.1+dfsg-2), liblpsolve55-dev (= 5.5.2.5-2), liblsan0 (= 10.2.1-2ubuntu3), liblz4-1 (= 1.9.3-0ubuntu1), liblzma-dev (= 5.2.4-1ubuntu1), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmetis5 (= 5.1.0.dfsg-7), libmongoose2 (= 1:5.8.1+dfsg-2), libmount1 (= 2.36.1-1ubuntu2), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libmysql++-dev (= 3.2.5-2), libmysql++3v5 (= 3.2.5-2), libmysqlclient-dev (= 8.0.22-0ubuntu0.20.10.2), libmysqlclient21 (= 8.0.22-0ubuntu0.20.10.2), libncurses-dev (= 6.2+20201114-2), libncurses5-dev (= 6.2+20201114-2), libncurses6 (= 6.2+20201114-2), libncursesw6 (= 6.2+20201114-2), libnettle8 (= 3.6-2), libnghttp2-14 (= 1.42.0-1), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre2-8-0 (= 10.35-2ubuntu1), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-6), libpipeline1 (= 1.5.3-1), libpsl5 (= 0.21.0-1.1ubuntu1), libpython3-stdlib (= 3.9.1-1), libpython3.9-minimal (= 3.9.1-1), libpython3.9-stdlib (= 3.9.1-1), libquadmath0 (= 10.2.1-2ubuntu3), librbio2 (= 1:5.8.1+dfsg-2), libreadline8 (= 8.1-1), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libruby2.7 (= 2.7.2-3), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libseccomp2 (= 2.4.3-1ubuntu6), libselinux1 (= 3.1-2build2), libsigsegv2 (= 2.12-3), libsliplu1 (= 1:5.8.1+dfsg-2), libsmartcols1 (= 2.36.1-1ubuntu2), libspqr2 (= 1:5.8.1+dfsg-2), libsqlite3-0 (= 3.34.0-1), libsqlite3-dev (= 3.34.0-1), libssh-4 (= 0.9.5-1), libssl-dev (= 1.1.1f-1ubuntu5), libssl1.1 (= 1.1.1f-1ubuntu5), libstdc++-10-dev (= 10.2.1-2ubuntu3), libstdc++6 (= 10.2.1-2ubuntu3), libsub-override-perl (= 0.09-2), libsuitesparse-dev (= 1:5.8.1+dfsg-2), libsuitesparseconfig5 (= 1:5.8.1+dfsg-2), libsystemd0 (= 247.1-4ubuntu1), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtool (= 2.4.6-14), libtsan0 (= 10.2.1-2ubuntu3), libubsan1 (= 10.2.1-2ubuntu3), libuchardet0 (= 0.0.7-1), libudev1 (= 247.1-4ubuntu1), libumfpack5 (= 1:5.8.1+dfsg-2), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-1ubuntu2), libwind0-heimdal (= 7.7.0+dfsg-2), libxml2 (= 2.9.10+dfsg-6.3build1), libyaml-0-2 (= 0.2.2-1), libzstd1 (= 1.4.8+dfsg-1), linux-libc-dev (= 5.8.0-34.37+21.04.1), login (= 1:4.8.1-1ubuntu7), lsb-base (= 11.1.0ubuntu2), lzma-dev (= 9.22-2.2), m4 (= 1.4.18-4), mailcap (= 3.67ubuntu1), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), media-types (= 1.0.1ubuntu1), mime-support (= 3.66), mysql-common (= 5.8+1.0.5ubuntu2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), openssl (= 1.1.1f-1ubuntu5), patch (= 2.7.6-6), perl (= 5.32.0-6), perl-base (= 5.32.0-6), perl-modules-5.32 (= 5.32.0-6), po-debconf (= 1.0.21+nmu1), python3 (= 3.9.1-1), python3-minimal (= 3.9.1-1), python3.9 (= 3.9.1-1), python3.9-minimal (= 3.9.1-1), rake (= 13.0.1-4), readline-common (= 8.1-1), rpcsvc-proto (= 1.4.2-0ubuntu4), ruby (= 1:2.7+2), ruby-asciidoctor (= 2.0.12-1), ruby-minitest (= 5.13.0-1), ruby-net-telnet (= 0.1.1-2), ruby-power-assert (= 1.1.7-1), ruby-rubygems (= 3.2.0~rc.2-5), ruby-test-unit (= 3.3.5-1), ruby-xmlrpc (= 0.3.0-2), ruby2.7 (= 2.7.2-3), rubygems-integration (= 1.17.3), samtools (= 1.11-1), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.32+dfsg-1), tzdata (= 2020d-1ubuntu1), util-linux (= 2.36.1-1ubuntu2), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609686648" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ augustus_3.4.0+dfsg2-2_ppc64el.deb ---------------------------------- new Debian package, version 2.0. size 1985996 bytes: control archive=4988 bytes. 1610 bytes, 24 lines control 10236 bytes, 137 lines md5sums Package: augustus Version: 3.4.0+dfsg2-2 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 13178 Depends: libbamtools2.5.1 (>= 2.5.1+dfsg), libboost-iostreams1.74.0 (>= 1.74.0), libc6 (>= 2.29), libcolamd2 (>= 1:4.5.2), libgcc-s1 (>= 4.2), libgsl25 (>= 2.6), libhts3 (>= 1.10), libmysql++3v5 (>= 3.2.5-1~), libmysqlclient21 (>= 8.0.11), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 9), augustus-data Recommends: samtools Suggests: cdbfasta, diamond-aligner, libfile-which-perl, libparallel-forkmanager-perl, libyaml-perl, libdbd-mysql-perl, python3-biopython Section: science Priority: optional Homepage: https://bioinf.uni-greifswald.de/augustus/ Description: gene prediction in eukaryotic genomes AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes. drwxr-xr-x root/root 0 2021-01-03 15:10 ./ drwxr-xr-x root/root 0 2021-01-03 15:10 ./usr/ drwxr-xr-x root/root 0 2021-01-03 15:10 ./usr/bin/ -rwxr-xr-x root/root 67752 2021-01-03 15:10 ./usr/bin/aln2wig -rwxr-xr-x root/root 3354776 2021-01-03 15:10 ./usr/bin/augustus -rwxr-xr-x root/root 68736 2021-01-03 15:10 ./usr/bin/bam2hints -rwxr-xr-x root/root 67752 2021-01-03 15:10 ./usr/bin/bam2wig -rwxr-xr-x root/root 67848 2021-01-03 15:10 ./usr/bin/compileSpliceCands -rwxr-xr-x root/root 3551384 2021-01-03 15:10 ./usr/bin/etraining -rwxr-xr-x root/root 399928 2021-01-03 15:10 ./usr/bin/fastBlockSearch -rwxr-xr-x root/root 264584 2021-01-03 15:10 ./usr/bin/filterBam -rwxr-xr-x root/root 3289512 2021-01-03 15:10 ./usr/bin/getSeq -rwxr-xr-x root/root 199472 2021-01-03 15:10 ./usr/bin/homGeneMapping -rwxr-xr-x root/root 199008 2021-01-03 15:10 ./usr/bin/joingenes -rwxr-xr-x root/root 268792 2021-01-03 15:10 ./usr/bin/load2db -rwxr-xr-x root/root 268872 2021-01-03 15:10 ./usr/bin/load2sqlitedb -rwxr-xr-x root/root 400280 2021-01-03 15:10 ./usr/bin/pp_simScore -rwxr-xr-x root/root 67960 2021-01-03 15:10 ./usr/bin/prepareAlign drwxr-xr-x root/root 0 2021-01-03 15:10 ./usr/share/ drwxr-xr-x root/root 0 2021-01-03 15:10 ./usr/share/augustus/ drwxr-xr-x root/root 0 2021-01-03 15:10 ./usr/share/augustus/scripts/ -rw-r--r-- root/root 12674 2021-01-03 15:10 ./usr/share/augustus/scripts/README.autoAug -rw-r--r-- root/root 12247 2021-01-03 15:10 ./usr/share/augustus/scripts/SplicedAlignment.pm -rwxr-xr-x root/root 20552 2021-01-03 15:10 ./usr/share/augustus/scripts/aa2nonred.pl -rwxr-xr-x root/root 3510 2021-01-03 15:10 ./usr/share/augustus/scripts/add_name_to_gff3.pl -rw-r--r-- root/root 24576 2021-01-03 15:10 ./usr/share/augustus/scripts/augustify.py -rwxr-xr-x root/root 3022 2021-01-03 15:10 ./usr/share/augustus/scripts/augustus2browser.pl -rwxr-xr-x root/root 389 2021-01-03 15:10 ./usr/share/augustus/scripts/augustus2gbrowse.pl -rwxr-xr-x root/root 54522 2021-01-03 15:10 ./usr/share/augustus/scripts/autoAug.pl -rwxr-xr-x root/root 23383 2021-01-03 15:10 ./usr/share/augustus/scripts/autoAugPred.pl -rwxr-xr-x root/root 45628 2021-01-03 15:10 ./usr/share/augustus/scripts/autoAugTrain.pl -rw-r--r-- root/root 12830 2021-01-03 15:10 ./usr/share/augustus/scripts/bamToWig.py -rwxr-xr-x root/root 3370 2021-01-03 15:10 ./usr/share/augustus/scripts/bedgraph2wig.pl -rwxr-xr-x root/root 4724 2021-01-03 15:10 ./usr/share/augustus/scripts/blat2gbrowse.pl -rwxr-xr-x root/root 32708 2021-01-03 15:10 ./usr/share/augustus/scripts/blat2hints.pl -rwxr-xr-x root/root 11321 2021-01-03 15:10 ./usr/share/augustus/scripts/block2prfl.pl -rwxr-xr-x root/root 2233 2021-01-03 15:10 ./usr/share/augustus/scripts/cegma2gff.pl -rwxr-xr-x root/root 3843 2021-01-03 15:10 ./usr/share/augustus/scripts/checkParamArchive.pl -rwxr-xr-x root/root 1151 2021-01-03 15:10 ./usr/share/augustus/scripts/checkUTR -rwxr-xr-x root/root 535 2021-01-03 15:10 ./usr/share/augustus/scripts/cleanDOSfasta.pl -rwxr-xr-x root/root 7558 2021-01-03 15:10 ./usr/share/augustus/scripts/clusterAndSplitGenes.pl -rwxr-xr-x root/root 1653 2021-01-03 15:10 ./usr/share/augustus/scripts/compare_masking.pl -rwxr-xr-x root/root 2364 2021-01-03 15:10 ./usr/share/augustus/scripts/computeFlankingRegion.pl -rwxr-xr-x root/root 7247 2021-01-03 15:10 ./usr/share/augustus/scripts/createAugustusJoblist.pl -rwxr-xr-x root/root 3244 2021-01-03 15:10 ./usr/share/augustus/scripts/del_from_prfl.pl -rwxr-xr-x root/root 9675 2021-01-03 15:10 ./usr/share/augustus/scripts/evalCGP.pl -rwxr-xr-x root/root 13247 2021-01-03 15:10 ./usr/share/augustus/scripts/eval_dualdecomp.pl -rwxr-xr-x root/root 3397 2021-01-03 15:10 ./usr/share/augustus/scripts/eval_multi_gtf.pl -rwxr-xr-x root/root 3043 2021-01-03 15:10 ./usr/share/augustus/scripts/exonerate2hints.pl -rwxr-xr-x root/root 1301 2021-01-03 15:10 ./usr/share/augustus/scripts/exoniphyDb2hints.pl -rw-r--r-- root/root 4617 2021-01-03 15:10 ./usr/share/augustus/scripts/extractAnno.py -rwxr-xr-x root/root 507 2021-01-03 15:10 ./usr/share/augustus/scripts/extractTranscriptEnds.pl -rwxr-xr-x root/root 446 2021-01-03 15:10 ./usr/share/augustus/scripts/filter-ppx.pl -rwxr-xr-x root/root 850 2021-01-03 15:10 ./usr/share/augustus/scripts/filterGenes.pl -rwxr-xr-x root/root 1071 2021-01-03 15:10 ./usr/share/augustus/scripts/filterGenesIn.pl -rwxr-xr-x root/root 2911 2021-01-03 15:10 ./usr/share/augustus/scripts/filterGenesIn_mRNAname.pl -rwxr-xr-x root/root 1716 2021-01-03 15:10 ./usr/share/augustus/scripts/filterGenesOut_mRNAname.pl -rwxr-xr-x root/root 1122 2021-01-03 15:10 ./usr/share/augustus/scripts/filterInFrameStopCodons.pl -rwxr-xr-x root/root 2923 2021-01-03 15:10 ./usr/share/augustus/scripts/filterMaf.pl -rwxr-xr-x root/root 17619 2021-01-03 15:10 ./usr/share/augustus/scripts/filterPSL.pl -rwxr-xr-x root/root 4465 2021-01-03 15:10 ./usr/share/augustus/scripts/filterShrimp.pl -rwxr-xr-x root/root 2081 2021-01-03 15:10 ./usr/share/augustus/scripts/filterSpliceHints.pl -rwxr-xr-x root/root 1649 2021-01-03 15:10 ./usr/share/augustus/scripts/findGffNamesInFasta.pl -rw-r--r-- root/root 39199 2021-01-03 15:10 ./usr/share/augustus/scripts/fix_in_frame_stop_codon_genes.py -rwxr-xr-x root/root 3632 2021-01-03 15:10 ./usr/share/augustus/scripts/fix_joingenes_gtf.pl -rwxr-xr-x root/root 3098 2021-01-03 15:10 ./usr/share/augustus/scripts/gbSmallDNA2gff.pl -rw-r--r-- root/root 8078 2021-01-03 15:10 ./usr/share/augustus/scripts/gbrowse.conf -rwxr-xr-x root/root 3769 2021-01-03 15:10 ./usr/share/augustus/scripts/gbrowseold2gff3.pl -rwxr-xr-x root/root 7642 2021-01-03 15:10 ./usr/share/augustus/scripts/getAnnoFasta.pl -rw-r--r-- root/root 11503 2021-01-03 15:10 ./usr/share/augustus/scripts/getAnnoFastaFromJoingenes.py -rwxr-xr-x root/root 2038 2021-01-03 15:10 ./usr/share/augustus/scripts/getLinesMatching.pl -rwxr-xr-x root/root 2138 2021-01-03 15:10 ./usr/share/augustus/scripts/get_loci_from_gb.pl -rwxr-xr-x root/root 19123 2021-01-03 15:10 ./usr/share/augustus/scripts/gff2gbSmallDNA.pl -rw-r--r-- root/root 1758 2021-01-03 15:10 ./usr/share/augustus/scripts/gff2ps_mycustom -rwxr-xr-x root/root 4074 2021-01-03 15:10 ./usr/share/augustus/scripts/gffGetmRNA.pl -rwxr-xr-x root/root 3109 2021-01-03 15:10 ./usr/share/augustus/scripts/gp2othergp.pl -rwxr-xr-x root/root 7019 2021-01-03 15:10 ./usr/share/augustus/scripts/gtf2aa.pl -rwxr-xr-x root/root 9915 2021-01-03 15:10 ./usr/share/augustus/scripts/gtf2bed.pl -rwxr-xr-x root/root 15592 2021-01-03 15:10 ./usr/share/augustus/scripts/gtf2gff.pl -rwxr-xr-x root/root 2833 2021-01-03 15:10 ./usr/share/augustus/scripts/gth2gtf.pl -rwxr-xr-x root/root 12923 2021-01-03 15:10 ./usr/share/augustus/scripts/hal2maf_split.pl -rw-r--r-- root/root 9809 2021-01-03 15:10 ./usr/share/augustus/scripts/helpMod.pm -rwxr-xr-x root/root 1427 2021-01-03 15:10 ./usr/share/augustus/scripts/joinPeptides.pl -rwxr-xr-x root/root 9060 2021-01-03 15:10 ./usr/share/augustus/scripts/join_aug_pred.pl -rwxr-xr-x root/root 2665 2021-01-03 15:10 ./usr/share/augustus/scripts/join_mult_hints.pl -rwxr-xr-x root/root 3469 2021-01-03 15:10 ./usr/share/augustus/scripts/maf2conswig.pl -rwxr-xr-x root/root 468 2021-01-03 15:10 ./usr/share/augustus/scripts/makeMatchLists.pl -rwxr-xr-x root/root 16749 2021-01-03 15:10 ./usr/share/augustus/scripts/makeUtrTrainingSet.pl -rwxr-xr-x root/root 1658 2021-01-03 15:10 ./usr/share/augustus/scripts/maskNregions.pl -rwxr-xr-x root/root 1701 2021-01-03 15:10 ./usr/share/augustus/scripts/merge_masking.pl -rwxr-xr-x root/root 2490 2021-01-03 15:10 ./usr/share/augustus/scripts/moveParameters.pl -rwxr-xr-x root/root 20704 2021-01-03 15:10 ./usr/share/augustus/scripts/msa2prfl.pl -rwxr-xr-x root/root 7720 2021-01-03 15:10 ./usr/share/augustus/scripts/new_species.pl -rwxr-xr-x root/root 7092 2021-01-03 15:10 ./usr/share/augustus/scripts/opt_init_and_term_probs.pl -rwxr-xr-x root/root 85334 2021-01-03 15:10 ./usr/share/augustus/scripts/optimize_augustus.pl -rwxr-xr-x root/root 3606 2021-01-03 15:10 ./usr/share/augustus/scripts/parseSim4Output.pl -rwxr-xr-x root/root 17132 2021-01-03 15:10 ./usr/share/augustus/scripts/partition_gtf2gb.pl -rwxr-xr-x root/root 2108 2021-01-03 15:10 ./usr/share/augustus/scripts/pasapolyA2hints.pl -rwxr-xr-x root/root 3369 2021-01-03 15:10 ./usr/share/augustus/scripts/peptides2alternatives.pl -rwxr-xr-x root/root 6792 2021-01-03 15:10 ./usr/share/augustus/scripts/peptides2hints.pl -rwxr-xr-x root/root 2761 2021-01-03 15:10 ./usr/share/augustus/scripts/phastconsDB2hints.pl -rwxr-xr-x root/root 2330 2021-01-03 15:10 ./usr/share/augustus/scripts/polyA2hints.pl -rwxr-xr-x root/root 10582 2021-01-03 15:10 ./usr/share/augustus/scripts/prints2prfl.pl -rwxr-xr-x root/root 8032 2021-01-03 15:10 ./usr/share/augustus/scripts/pslMap.pl -rwxr-xr-x root/root 1971 2021-01-03 15:10 ./usr/share/augustus/scripts/randomSplit.pl -rwxr-xr-x root/root 1946 2021-01-03 15:10 ./usr/share/augustus/scripts/retroDB2hints.pl -rwxr-xr-x root/root 1403 2021-01-03 15:10 ./usr/share/augustus/scripts/rmRedundantHints.pl -rwxr-xr-x root/root 723 2021-01-03 15:10 ./usr/share/augustus/scripts/runAllSim4.pl -rwxr-xr-x root/root 4992 2021-01-03 15:10 ./usr/share/augustus/scripts/samMap.pl -rwxr-xr-x root/root 1159 2021-01-03 15:10 ./usr/share/augustus/scripts/scipiogff2gff.pl -rwxr-xr-x root/root 2221 2021-01-03 15:10 ./usr/share/augustus/scripts/setStopCodonFreqs.pl -rwxr-xr-x root/root 1215 2021-01-03 15:10 ./usr/share/augustus/scripts/simpleFastaHeaders.pl -rwxr-xr-x root/root 2598 2021-01-03 15:10 ./usr/share/augustus/scripts/simplifyFastaHeaders.pl -rwxr-xr-x root/root 2099 2021-01-03 15:10 ./usr/share/augustus/scripts/splitMfasta.pl -rwxr-xr-x root/root 861 2021-01-03 15:10 ./usr/share/augustus/scripts/split_wiggle.pl -rwxr-xr-x root/root 2158 2021-01-03 15:10 ./usr/share/augustus/scripts/summarizeACGTcontent.pl -rwxr-xr-x root/root 19253 2021-01-03 15:10 ./usr/share/augustus/scripts/transMap2hints.pl -rwxr-xr-x root/root 1965 2021-01-03 15:10 ./usr/share/augustus/scripts/uniquePeptides.pl -rwxr-xr-x root/root 2395 2021-01-03 15:10 ./usr/share/augustus/scripts/utrgff2gbrowse.pl -rw-r--r-- root/root 6352 2021-01-03 15:10 ./usr/share/augustus/scripts/webserver-results.head -rw-r--r-- root/root 1033 2021-01-03 15:10 ./usr/share/augustus/scripts/webserver-results.tail -rwxr-xr-x root/root 1602 2021-01-03 15:10 ./usr/share/augustus/scripts/weedMaf.pl -rwxr-xr-x root/root 5374 2021-01-03 15:10 ./usr/share/augustus/scripts/wig2hints.pl -rwxr-xr-x root/root 2881 2021-01-03 15:10 ./usr/share/augustus/scripts/wigchoose.pl -rwxr-xr-x root/root 14137 2021-01-03 15:10 ./usr/share/augustus/scripts/writeResultsPage.pl -rwxr-xr-x root/root 10061 2021-01-03 15:10 ./usr/share/augustus/scripts/yaml2gff.1.4.pl drwxr-xr-x root/root 0 2021-01-03 15:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-01-03 15:10 ./usr/share/doc/augustus/ lrwxrwxrwx root/root 0 2021-01-03 15:10 ./usr/share/doc/augustus/HISTORY.TXT.gz -> changelog.gz -rw-r--r-- root/root 1377 2021-01-03 15:10 ./usr/share/doc/augustus/changelog.Debian.gz -rw-r--r-- root/root 3366 2020-12-28 21:22 ./usr/share/doc/augustus/copyright drwxr-xr-x root/root 0 2021-01-03 15:10 ./usr/share/man/ drwxr-xr-x root/root 0 2021-01-03 15:10 ./usr/share/man/man1/ -rw-r--r-- root/root 602 2021-01-03 15:10 ./usr/share/man/man1/aln2wig.1.gz -rw-r--r-- root/root 1692 2021-01-03 15:10 ./usr/share/man/man1/augustus.1.gz -rw-r--r-- root/root 1537 2021-01-03 15:10 ./usr/share/man/man1/bam2hints.1.gz -rw-r--r-- root/root 788 2021-01-03 15:10 ./usr/share/man/man1/bam2wig.1.gz -rw-r--r-- root/root 842 2021-01-03 15:10 ./usr/share/man/man1/compileSpliceCands.1.gz -rw-r--r-- root/root 720 2021-01-03 15:10 ./usr/share/man/man1/etraining.1.gz -rw-r--r-- root/root 1348 2021-01-03 15:10 ./usr/share/man/man1/fastBlockSearch.1.gz -rw-r--r-- root/root 1751 2021-01-03 15:10 ./usr/share/man/man1/filterBam.1.gz -rw-r--r-- root/root 1251 2021-01-03 15:10 ./usr/share/man/man1/getSeq.1.gz -rw-r--r-- root/root 1850 2021-01-03 15:10 ./usr/share/man/man1/homGeneMapping.1.gz -rw-r--r-- root/root 2043 2021-01-03 15:10 ./usr/share/man/man1/joingenes.1.gz -rw-r--r-- root/root 1253 2021-01-03 15:10 ./usr/share/man/man1/load2db.1.gz -rw-r--r-- root/root 1434 2021-01-03 15:10 ./usr/share/man/man1/load2sqlitedb.1.gz -rw-r--r-- root/root 2294 2021-01-03 15:10 ./usr/share/man/man1/pp_simScore.1.gz -rw-r--r-- root/root 679 2021-01-03 15:10 ./usr/share/man/man1/prepareAlign.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: n/a Build-Time: 678 Distribution: hirsute-proposed Host Architecture: ppc64el Install-Time: 29 Job: augustus_3.4.0+dfsg2-2.dsc Machine Architecture: ppc64el Package: augustus Package-Time: 720 Source-Version: 3.4.0+dfsg2-2 Space: n/a Status: successful Version: 3.4.0+dfsg2-2 -------------------------------------------------------------------------------- Finished at 2021-01-03T23:39:15Z Build needed 00:12:00, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20761513 Scanning for processes to kill in build PACKAGEBUILD-20761513