https://launchpad.net/ubuntu/+source/augustus/3.5.0+dfsg-4build1/+build/27576143 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-002 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:15 UTC 2023 ppc64le Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 19 Dec 15:12:19 ntpdate[1937]: adjust time server 10.211.37.1 offset 0.001718 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27576143 --image-type chroot /home/buildd/filecache-default/d42c54d6e204d222772cc047f01d282d9c30a0e5 Creating target for build PACKAGEBUILD-27576143 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27576143 Starting target for build PACKAGEBUILD-27576143 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27576143 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27576143 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27576143 Updating target for build PACKAGEBUILD-27576143 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [240 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el Packages [1351 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el Packages [15.1 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6031 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [127 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [44.9 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [1054 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [325 kB] Fetched 25.1 MB in 10s (2448 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-powerpc64le-linux-gnu bsdextrautils bsdutils coreutils cpp cpp-13 debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep init init-system-helpers krb5-locales libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgssapi-krb5-2 libidn2-0 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps readline-common systemd systemd-dev systemd-sysv sysvinit-utils tar ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 133 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After this operation, 8879 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl-dev ppc64el 1.3.0-3 [79.2 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.38-3ubuntu1 [2083 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.38-3ubuntu1 [21.0 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-common all 1.3.4+ds-1 [7920 B] Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1 [222 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libgssapi-krb5-2 ppc64el 1.20.1-5build1 [180 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libkrb5-3 ppc64el 1.20.1-5build1 [426 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libk5crypto3 ppc64el 1.20.1-5build1 [106 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libkrb5support0 ppc64el 1.20.1-5build1 [37.5 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libssl3 ppc64el 3.0.10-1ubuntu3 [2130 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc3 ppc64el 1.3.4+ds-1 [98.9 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl2 ppc64el 1.3.0-3 [47.3 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-libc-dev ppc64el 6.6.0-14.14 [1569 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libcc1-0 ppc64el 13.2.0-9ubuntu1 [48.7 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libctf0 ppc64el 2.41.50.20231214-1ubuntu1 [95.4 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libctf-nobfd0 ppc64el 2.41.50.20231214-1ubuntu1 [99.4 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.41.50.20231214-1ubuntu1 [2646 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libbinutils ppc64el 2.41.50.20231214-1ubuntu1 [667 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils-common ppc64el 2.41.50.20231214-1ubuntu1 [230 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils ppc64el 2.41.50.20231214-1ubuntu1 [3096 B] Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-base ppc64el 13.2.0-9ubuntu1 [45.2 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-s1 ppc64el 13.2.0-9ubuntu1 [38.6 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 13.2.0-9ubuntu1 [154 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libitm1 ppc64el 13.2.0-9ubuntu1 [32.2 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libatomic1 ppc64el 13.2.0-9ubuntu1 [10.7 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libasan8 ppc64el 13.2.0-9ubuntu1 [2837 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el liblsan0 ppc64el 13.2.0-9ubuntu1 [1233 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libtsan2 ppc64el 13.2.0-9ubuntu1 [2656 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libubsan1 ppc64el 13.2.0-9ubuntu1 [1134 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libquadmath0 ppc64el 13.2.0-9ubuntu1 [156 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13 ppc64el 13.2.0-9ubuntu1 [11.2 MB] Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++-13-dev ppc64el 13.2.0-9ubuntu1 [2441 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-13-dev ppc64el 13.2.0-9ubuntu1 [1581 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13 ppc64el 13.2.0-9ubuntu1 [19.5 MB] Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13 ppc64el 13.2.0-9ubuntu1 [9747 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++6 ppc64el 13.2.0-9ubuntu1 [871 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g ppc64el 1:1.3.dfsg-3ubuntu1 [72.1 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libsframe1 ppc64el 2.41.50.20231214-1ubuntu1 [15.0 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libzstd1 ppc64el 1.5.5+dfsg2-2 [390 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6 ppc64el 2.38-3ubuntu1 [3245 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el base-files ppc64el 13ubuntu5 [73.9 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el debianutils ppc64el 5.14 [89.5 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el bash ppc64el 5.2.21-2ubuntu1 [959 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el bsdutils ppc64el 1:2.39.2-6ubuntu1 [97.0 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el coreutils ppc64el 9.4-2ubuntu1 [1535 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el diffutils ppc64el 1:3.10-1 [200 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma5 ppc64el 5.4.5-0.1 [158 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libapparmor1 ppc64el 4.0.0~alpha2-0ubuntu7 [53.6 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el libaudit-common all 1:3.1.2-1 [5512 B] Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el libcap-ng0 ppc64el 0.8.3-3 [16.1 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libaudit1 ppc64el 1:3.1.2-1 [51.6 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libblkid1 ppc64el 2.39.2-6ubuntu1 [152 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libkmod2 ppc64el 30+20230601-2ubuntu1 [62.4 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-8-0 ppc64el 10.42-4ubuntu1 [263 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el libselinux1 ppc64el 3.5-1build2 [97.3 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el libmount1 ppc64el 2.39.2-6ubuntu1 [166 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam0g ppc64el 1.5.2-9.1ubuntu1 [72.5 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libseccomp2 ppc64el 2.5.4-2ubuntu1 [61.9 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-sysv ppc64el 255-1ubuntu1 [11.7 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-dev all 255-1ubuntu1 [98.5 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd ppc64el 255-1ubuntu1 [3808 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd-shared ppc64el 255-1ubuntu1 [2335 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el libargon2-1 ppc64el 0~20190702+dfsg-4 [27.1 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el libuuid1 ppc64el 2.39.2-6ubuntu1 [37.8 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el libcryptsetup12 ppc64el 2:2.6.1-5ubuntu1 [347 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el libfdisk1 ppc64el 2.39.2-6ubuntu1 [168 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el mount ppc64el 2.39.2-6ubuntu1 [124 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd0 ppc64el 255-1ubuntu1 [519 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libudev1 ppc64el 255-1ubuntu1 [195 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el libxxhash0 ppc64el 0.8.2-2 [30.4 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libapt-pkg6.0 ppc64el 2.7.7 [1005 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main ppc64el tar ppc64el 1.34+dfsg-1.2ubuntu2 [355 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el dpkg ppc64el 1.22.1ubuntu5 [1467 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el grep ppc64el 3.11-3 [172 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el login ppc64el 1:4.13+dfsg1-3ubuntu1 [204 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el ncurses-bin ppc64el 6.4+20231209-1 [200 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libperl5.36 ppc64el 5.36.0-10ubuntu1 [4849 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el perl ppc64el 5.36.0-10ubuntu1 [235 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main ppc64el perl-base ppc64el 5.36.0-10ubuntu1 [1847 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg2-4 [853 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main ppc64el libgdbm6 ppc64el 1.23-5 [40.6 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el libgdbm-compat4 ppc64el 1.23-5 [6620 B] Get:84 http://ftpmaster.internal/ubuntu noble/main ppc64el util-linux ppc64el 2.39.2-6ubuntu1 [1184 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el libdebconfclient0 ppc64el 0.271ubuntu1 [11.1 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el base-passwd ppc64el 3.6.3 [52.5 kB] Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-bin ppc64el 2.38-3ubuntu1 [745 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main ppc64el ncurses-base all 6.4+20231209-1 [25.2 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main ppc64el sysvinit-utils ppc64el 3.08-3ubuntu1 [35.2 kB] Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt ppc64el 2.7.7 [1392 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt-utils ppc64el 2.7.7 [224 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main ppc64el ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main ppc64el libunistring5 ppc64el 1.1-2 [556 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el libidn2-0 ppc64el 2.3.4-1build1 [67.8 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el libffi8 ppc64el 3.4.4-2 [27.3 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main ppc64el libp11-kit0 ppc64el 0.25.3-2ubuntu2 [304 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main ppc64el libgnutls30 ppc64el 3.8.1-4ubuntu6 [1043 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam-modules-bin ppc64el 1.5.2-9.1ubuntu1 [52.3 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam-modules ppc64el 1.5.2-9.1ubuntu1 [325 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el init ppc64el 1.66ubuntu1 [6190 B] Get:102 http://ftpmaster.internal/ubuntu noble/main ppc64el libsmartcols1 ppc64el 2.39.2-6ubuntu1 [77.1 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main ppc64el uuid-runtime ppc64el 2.39.2-6ubuntu1 [33.4 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main ppc64el libgpg-error-l10n all 1.47-3build1 [8024 B] Get:105 http://ftpmaster.internal/ubuntu noble/main ppc64el libgpg-error0 ppc64el 1.47-3build1 [87.6 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam-runtime all 1.5.2-9.1ubuntu1 [41.5 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main ppc64el libsemanage-common all 3.5-1build1 [9982 B] Get:108 http://ftpmaster.internal/ubuntu noble/main ppc64el libsepol2 ppc64el 3.5-2 [386 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main ppc64el libsemanage2 ppc64el 3.5-1build1 [113 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main ppc64el libncursesw6 ppc64el 6.4+20231209-1 [182 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main ppc64el libtinfo6 ppc64el 6.4+20231209-1 [130 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main ppc64el passwd ppc64el 1:4.13+dfsg1-3ubuntu1 [875 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main ppc64el libproc2-0 ppc64el 2:4.0.4-2ubuntu1 [66.6 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main ppc64el mawk ppc64el 1.3.4.20231126-1 [137 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main ppc64el procps ppc64el 2:4.0.4-2ubuntu1 [733 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main ppc64el krb5-locales all 1.20.1-5build1 [13.7 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main ppc64el readline-common all 8.2-3 [56.2 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main ppc64el libreadline8 ppc64el 8.2-3 [177 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main ppc64el libsqlite3-0 ppc64el 3.44.2-1 [788 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main ppc64el openssl ppc64el 3.0.10-1ubuntu3 [1208 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main ppc64el bash-completion all 1:2.11-8 [180 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main ppc64el bsdextrautils ppc64el 2.39.2-6ubuntu1 [78.2 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main ppc64el libpng16-16 ppc64el 1.6.40-2 [239 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main ppc64el xz-utils ppc64el 5.4.5-0.1 [275 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main ppc64el g++ ppc64el 4:13.2.0-2ubuntu1 [1110 B] Get:126 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc ppc64el 4:13.2.0-2ubuntu1 [5212 B] Get:127 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp ppc64el 4:13.2.0-2ubuntu1 [29.0 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main ppc64el dpkg-dev all 1.22.1ubuntu5 [1147 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main ppc64el libdpkg-perl all 1.22.1ubuntu5 [286 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main ppc64el lto-disabled-list all 44 [12.4 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main ppc64el libfakeroot ppc64el 1.32.2-1 [34.0 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main ppc64el fakeroot ppc64el 1.32.2-1 [69.0 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main ppc64el optipng ppc64el 0.7.7-3 [90.2 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main ppc64el pinentry-curses ppc64el 1.2.1-3ubuntu1 [38.2 kB] Preconfiguring packages ... Fetched 108 MB in 31s (3439 kB/s) (Reading database ... 13550 files and directories currently installed.) Preparing to unpack .../00-libnsl-dev_1.3.0-3_ppc64el.deb ... Unpacking libnsl-dev:ppc64el (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../01-libc6-dev_2.38-3ubuntu1_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../02-libc-dev-bin_2.38-3ubuntu1_ppc64el.deb ... Unpacking libc-dev-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../03-libtirpc-common_1.3.4+ds-1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../04-libtirpc-dev_1.3.4+ds-1_ppc64el.deb ... Unpacking libtirpc-dev:ppc64el (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../05-libgssapi-krb5-2_1.20.1-5build1_ppc64el.deb ... Unpacking libgssapi-krb5-2:ppc64el (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../06-libkrb5-3_1.20.1-5build1_ppc64el.deb ... Unpacking libkrb5-3:ppc64el (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../07-libk5crypto3_1.20.1-5build1_ppc64el.deb ... Unpacking libk5crypto3:ppc64el (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../08-libkrb5support0_1.20.1-5build1_ppc64el.deb ... Unpacking libkrb5support0:ppc64el (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../09-libssl3_3.0.10-1ubuntu3_ppc64el.deb ... Unpacking libssl3:ppc64el (3.0.10-1ubuntu3) over (3.0.10-1ubuntu2) ... Preparing to unpack .../10-libtirpc3_1.3.4+ds-1_ppc64el.deb ... Unpacking libtirpc3:ppc64el (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../11-libnsl2_1.3.0-3_ppc64el.deb ... Unpacking libnsl2:ppc64el (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../12-linux-libc-dev_6.6.0-14.14_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (6.6.0-14.14) over (6.5.0-9.9) ... Preparing to unpack .../13-libcc1-0_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libcc1-0:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../14-libctf0_2.41.50.20231214-1ubuntu1_ppc64el.deb ... Unpacking libctf0:ppc64el (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../15-libctf-nobfd0_2.41.50.20231214-1ubuntu1_ppc64el.deb ... Unpacking libctf-nobfd0:ppc64el (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../16-binutils-powerpc64le-linux-gnu_2.41.50.20231214-1ubuntu1_ppc64el.deb ... Unpacking binutils-powerpc64le-linux-gnu (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../17-libbinutils_2.41.50.20231214-1ubuntu1_ppc64el.deb ... Unpacking libbinutils:ppc64el (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../18-binutils-common_2.41.50.20231214-1ubuntu1_ppc64el.deb ... Unpacking binutils-common:ppc64el (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../19-binutils_2.41.50.20231214-1ubuntu1_ppc64el.deb ... Unpacking binutils (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../20-gcc-13-base_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking gcc-13-base:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Setting up gcc-13-base:ppc64el (13.2.0-9ubuntu1) ... (Reading database ... 13551 files and directories currently installed.) Preparing to unpack .../libgcc-s1_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libgcc-s1:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Setting up libgcc-s1:ppc64el (13.2.0-9ubuntu1) ... (Reading database ... 13551 files and directories currently installed.) Preparing to unpack .../00-libgomp1_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libgomp1:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../01-libitm1_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libitm1:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../02-libatomic1_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libatomic1:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../03-libasan8_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libasan8:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../04-liblsan0_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking liblsan0:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../05-libtsan2_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libtsan2:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../06-libubsan1_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libubsan1:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../07-libquadmath0_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libquadmath0:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../08-g++-13_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking g++-13 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../09-libstdc++-13-dev_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libstdc++-13-dev:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../10-libgcc-13-dev_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libgcc-13-dev:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../11-gcc-13_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking gcc-13 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../12-cpp-13_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking cpp-13 (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../13-libstdc++6_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (13.2.0-9ubuntu1) over (13.2.0-4ubuntu3) ... Setting up libstdc++6:ppc64el (13.2.0-9ubuntu1) ... (Reading database ... 13549 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3ubuntu1_ppc64el.deb ... Unpacking zlib1g:ppc64el (1:1.3.dfsg-3ubuntu1) over (1:1.2.13.dfsg-1ubuntu5) ... Setting up zlib1g:ppc64el (1:1.3.dfsg-3ubuntu1) ... (Reading database ... 13549 files and directories currently installed.) Preparing to unpack .../libsframe1_2.41.50.20231214-1ubuntu1_ppc64el.deb ... Unpacking libsframe1:ppc64el (2.41.50.20231214-1ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../libzstd1_1.5.5+dfsg2-2_ppc64el.deb ... Unpacking libzstd1:ppc64el (1.5.5+dfsg2-2) over (1.5.5+dfsg2-1ubuntu2) ... Setting up libzstd1:ppc64el (1.5.5+dfsg2-2) ... (Reading database ... 13549 files and directories currently installed.) Preparing to unpack .../libc6_2.38-3ubuntu1_ppc64el.deb ... Unpacking libc6:ppc64el (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Setting up libc6:ppc64el (2.38-3ubuntu1) ... (Reading database ... 13549 files and directories currently installed.) Preparing to unpack .../base-files_13ubuntu5_ppc64el.deb ... Unpacking base-files (13ubuntu5) over (13ubuntu3) ... Setting up base-files (13ubuntu5) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 13549 files and directories currently installed.) Preparing to unpack .../debianutils_5.14_ppc64el.deb ... Unpacking debianutils (5.14) over (5.8-1) ... Setting up debianutils (5.14) ... (Reading database ... 13548 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2ubuntu1_ppc64el.deb ... Unpacking bash (5.2.21-2ubuntu1) over (5.2.15-2ubuntu1) ... Setting up bash (5.2.21-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13548 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.39.2-6ubuntu1_ppc64el.deb ... Unpacking bsdutils (1:2.39.2-6ubuntu1) over (1:2.39.1-4ubuntu2) ... Setting up bsdutils (1:2.39.2-6ubuntu1) ... (Reading database ... 13548 files and directories currently installed.) Preparing to unpack .../coreutils_9.4-2ubuntu1_ppc64el.deb ... Unpacking coreutils (9.4-2ubuntu1) over (9.1-1ubuntu2) ... Setting up coreutils (9.4-2ubuntu1) ... (Reading database ... 13553 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_ppc64el.deb ... Unpacking diffutils (1:3.10-1) over (1:3.8-4) ... Setting up diffutils (1:3.10-1) ... (Reading database ... 13553 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.5-0.1_ppc64el.deb ... Unpacking liblzma5:ppc64el (5.4.5-0.1) over (5.4.1-0.2) ... Setting up liblzma5:ppc64el (5.4.5-0.1) ... (Reading database ... 13553 files and directories currently installed.) Preparing to unpack .../libapparmor1_4.0.0~alpha2-0ubuntu7_ppc64el.deb ... Unpacking libapparmor1:ppc64el (4.0.0~alpha2-0ubuntu7) over (4.0.0~alpha2-0ubuntu5) ... Preparing to unpack .../libaudit-common_1%3a3.1.2-1_all.deb ... Unpacking libaudit-common (1:3.1.2-1) over (1:3.1.1-1) ... Setting up libaudit-common (1:3.1.2-1) ... (Reading database ... 13553 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.3-3_ppc64el.deb ... Unpacking libcap-ng0:ppc64el (0.8.3-3) over (0.8.3-1build2) ... Setting up libcap-ng0:ppc64el (0.8.3-3) ... (Reading database ... 13553 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.2-1_ppc64el.deb ... Unpacking libaudit1:ppc64el (1:3.1.2-1) over (1:3.1.1-1) ... Setting up libaudit1:ppc64el (1:3.1.2-1) ... (Reading database ... 13553 files and directories currently installed.) Preparing to unpack .../libblkid1_2.39.2-6ubuntu1_ppc64el.deb ... Unpacking libblkid1:ppc64el (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up libblkid1:ppc64el (2.39.2-6ubuntu1) ... (Reading database ... 13553 files and directories currently installed.) Preparing to unpack .../libkmod2_30+20230601-2ubuntu1_ppc64el.deb ... Unpacking libkmod2:ppc64el (30+20230601-2ubuntu1) over (30+20230519-1ubuntu3) ... Preparing to unpack .../libpcre2-8-0_10.42-4ubuntu1_ppc64el.deb ... Unpacking libpcre2-8-0:ppc64el (10.42-4ubuntu1) over (10.42-4) ... Setting up libpcre2-8-0:ppc64el (10.42-4ubuntu1) ... (Reading database ... 13553 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-1build2_ppc64el.deb ... Unpacking libselinux1:ppc64el (3.5-1build2) over (3.5-1) ... Setting up libselinux1:ppc64el (3.5-1build2) ... (Reading database ... 13553 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.2-6ubuntu1_ppc64el.deb ... Unpacking libmount1:ppc64el (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up libmount1:ppc64el (2.39.2-6ubuntu1) ... (Reading database ... 13553 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-9.1ubuntu1_ppc64el.deb ... Unpacking libpam0g:ppc64el (1.5.2-9.1ubuntu1) over (1.5.2-6ubuntu1) ... Setting up libpam0g:ppc64el (1.5.2-9.1ubuntu1) ... (Reading database ... 13552 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-2ubuntu1_ppc64el.deb ... Unpacking libseccomp2:ppc64el (2.5.4-2ubuntu1) over (2.5.4-1ubuntu3) ... Setting up libseccomp2:ppc64el (2.5.4-2ubuntu1) ... (Reading database ... 13552 files and directories currently installed.) Preparing to unpack .../systemd-sysv_255-1ubuntu1_ppc64el.deb ... Unpacking systemd-sysv (255-1ubuntu1) over (253.5-1ubuntu6) ... Preparing to unpack .../systemd-dev_255-1ubuntu1_all.deb ... Unpacking systemd-dev (255-1ubuntu1) over (253.5-1ubuntu6) ... Setting up libssl3:ppc64el (3.0.10-1ubuntu3) ... (Reading database ... 13594 files and directories currently installed.) Preparing to unpack .../systemd_255-1ubuntu1_ppc64el.deb ... Unpacking systemd (255-1ubuntu1) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd-shared_255-1ubuntu1_ppc64el.deb ... Unpacking libsystemd-shared:ppc64el (255-1ubuntu1) over (253.5-1ubuntu6) ... Preparing to unpack .../libargon2-1_0~20190702+dfsg-4_ppc64el.deb ... Unpacking libargon2-1:ppc64el (0~20190702+dfsg-4) over (0~20190702+dfsg-3) ... Preparing to unpack .../libuuid1_2.39.2-6ubuntu1_ppc64el.deb ... Unpacking libuuid1:ppc64el (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up libuuid1:ppc64el (2.39.2-6ubuntu1) ... (Reading database ... 13694 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.6.1-5ubuntu1_ppc64el.deb ... Unpacking libcryptsetup12:ppc64el (2:2.6.1-5ubuntu1) over (2:2.6.1-4ubuntu3) ... Preparing to unpack .../libfdisk1_2.39.2-6ubuntu1_ppc64el.deb ... Unpacking libfdisk1:ppc64el (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Preparing to unpack .../mount_2.39.2-6ubuntu1_ppc64el.deb ... Unpacking mount (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Preparing to unpack .../libsystemd0_255-1ubuntu1_ppc64el.deb ... Unpacking libsystemd0:ppc64el (255-1ubuntu1) over (253.5-1ubuntu6) ... Setting up libsystemd0:ppc64el (255-1ubuntu1) ... (Reading database ... 13694 files and directories currently installed.) Preparing to unpack .../libudev1_255-1ubuntu1_ppc64el.deb ... Unpacking libudev1:ppc64el (255-1ubuntu1) over (253.5-1ubuntu6) ... Setting up libudev1:ppc64el (255-1ubuntu1) ... (Reading database ... 13694 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2_ppc64el.deb ... Unpacking libxxhash0:ppc64el (0.8.2-2) over (0.8.1-1) ... Setting up libxxhash0:ppc64el (0.8.2-2) ... (Reading database ... 13694 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.7.7_ppc64el.deb ... Unpacking libapt-pkg6.0:ppc64el (2.7.7) over (2.7.3) ... Setting up libapt-pkg6.0:ppc64el (2.7.7) ... (Reading database ... 13694 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1.2ubuntu2_ppc64el.deb ... Unpacking tar (1.34+dfsg-1.2ubuntu2) over (1.34+dfsg-1.2ubuntu1) ... Setting up tar (1.34+dfsg-1.2ubuntu2) ... (Reading database ... 13694 files and directories currently installed.) Preparing to unpack .../dpkg_1.22.1ubuntu5_ppc64el.deb ... Unpacking dpkg (1.22.1ubuntu5) over (1.22.0ubuntu1) ... Setting up dpkg (1.22.1ubuntu5) ... (Reading database ... 13692 files and directories currently installed.) Preparing to unpack .../grep_3.11-3_ppc64el.deb ... Unpacking grep (3.11-3) over (3.11-2) ... Setting up grep (3.11-3) ... (Reading database ... 13692 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-3ubuntu1_ppc64el.deb ... Unpacking login (1:4.13+dfsg1-3ubuntu1) over (1:4.13+dfsg1-1ubuntu1) ... Setting up login (1:4.13+dfsg1-3ubuntu1) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... 13692 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20231209-1_ppc64el.deb ... Unpacking ncurses-bin (6.4+20231209-1) over (6.4+20230625-2) ... Setting up ncurses-bin (6.4+20231209-1) ... (Reading database ... 13692 files and directories currently installed.) Preparing to unpack .../libperl5.36_5.36.0-10ubuntu1_ppc64el.deb ... Unpacking libperl5.36:ppc64el (5.36.0-10ubuntu1) over (5.36.0-9ubuntu1) ... Preparing to unpack .../perl_5.36.0-10ubuntu1_ppc64el.deb ... Unpacking perl (5.36.0-10ubuntu1) over (5.36.0-9ubuntu1) ... Preparing to unpack .../perl-base_5.36.0-10ubuntu1_ppc64el.deb ... Unpacking perl-base (5.36.0-10ubuntu1) over (5.36.0-9ubuntu1) ... Setting up perl-base (5.36.0-10ubuntu1) ... (Reading database ... 13692 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-10ubuntu1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-10ubuntu1) over (5.36.0-9ubuntu1) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg2-4_ppc64el.deb ... Unpacking libdb5.3:ppc64el (5.3.28+dfsg2-4) over (5.3.28+dfsg2-2) ... Setting up libdb5.3:ppc64el (5.3.28+dfsg2-4) ... (Reading database ... 13692 files and directories currently installed.) Preparing to unpack .../libgdbm6_1.23-5_ppc64el.deb ... Unpacking libgdbm6:ppc64el (1.23-5) over (1.23-3) ... Preparing to unpack .../libgdbm-compat4_1.23-5_ppc64el.deb ... Unpacking libgdbm-compat4:ppc64el (1.23-5) over (1.23-3) ... Preparing to unpack .../util-linux_2.39.2-6ubuntu1_ppc64el.deb ... Unpacking util-linux (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up util-linux (2.39.2-6ubuntu1) ... (Reading database ... 13693 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.271ubuntu1_ppc64el.deb ... Unpacking libdebconfclient0:ppc64el (0.271ubuntu1) over (0.270ubuntu1) ... Setting up libdebconfclient0:ppc64el (0.271ubuntu1) ... (Reading database ... 13693 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.3_ppc64el.deb ... Unpacking base-passwd (3.6.3) over (3.6.1) ... Setting up base-passwd (3.6.3) ... (Reading database ... 13693 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.66ubuntu1_all.deb ... Unpacking init-system-helpers (1.66ubuntu1) over (1.65.2ubuntu1) ... Setting up init-system-helpers (1.66ubuntu1) ... (Reading database ... 13693 files and directories currently installed.) Preparing to unpack .../libc-bin_2.38-3ubuntu1_ppc64el.deb ... Unpacking libc-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Setting up libc-bin (2.38-3ubuntu1) ... (Reading database ... 13693 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20231209-1_all.deb ... Unpacking ncurses-base (6.4+20231209-1) over (6.4+20230625-2) ... Setting up ncurses-base (6.4+20231209-1) ... (Reading database ... 13693 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.08-3ubuntu1_ppc64el.deb ... Unpacking sysvinit-utils (3.08-3ubuntu1) over (3.07-1ubuntu1) ... Setting up sysvinit-utils (3.08-3ubuntu1) ... (Reading database ... 13693 files and directories currently installed.) Preparing to unpack .../archives/apt_2.7.7_ppc64el.deb ... Unpacking apt (2.7.7) over (2.7.3) ... Setting up apt (2.7.7) ... (Reading database ... 13693 files and directories currently installed.) Preparing to unpack .../apt-utils_2.7.7_ppc64el.deb ... Unpacking apt-utils (2.7.7) over (2.7.3) ... Preparing to unpack .../ubuntu-keyring_2023.11.28.1_all.deb ... Unpacking ubuntu-keyring (2023.11.28.1) over (2021.03.26) ... Setting up ubuntu-keyring (2023.11.28.1) ... Selecting previously unselected package libunistring5:ppc64el. (Reading database ... 13693 files and directories currently installed.) Preparing to unpack .../libunistring5_1.1-2_ppc64el.deb ... Unpacking libunistring5:ppc64el (1.1-2) ... Setting up libunistring5:ppc64el (1.1-2) ... (Reading database ... 13698 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.4-1build1_ppc64el.deb ... Unpacking libidn2-0:ppc64el (2.3.4-1build1) over (2.3.4-1) ... Setting up libidn2-0:ppc64el (2.3.4-1build1) ... (Reading database ... 13698 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.4-2_ppc64el.deb ... Unpacking libffi8:ppc64el (3.4.4-2) over (3.4.4-1) ... Setting up libffi8:ppc64el (3.4.4-2) ... (Reading database ... 13698 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-2ubuntu2_ppc64el.deb ... Unpacking libp11-kit0:ppc64el (0.25.3-2ubuntu2) over (0.25.0-4ubuntu1) ... Setting up libp11-kit0:ppc64el (0.25.3-2ubuntu2) ... (Reading database ... 13698 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.8.1-4ubuntu6_ppc64el.deb ... Unpacking libgnutls30:ppc64el (3.8.1-4ubuntu6) over (3.8.1-4ubuntu1) ... Setting up libgnutls30:ppc64el (3.8.1-4ubuntu6) ... (Reading database ... 13699 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-9.1ubuntu1_ppc64el.deb ... Unpacking libpam-modules-bin (1.5.2-9.1ubuntu1) over (1.5.2-6ubuntu1) ... Setting up libpam-modules-bin (1.5.2-9.1ubuntu1) ... (Reading database ... 13698 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-9.1ubuntu1_ppc64el.deb ... Unpacking libpam-modules:ppc64el (1.5.2-9.1ubuntu1) over (1.5.2-6ubuntu1) ... Setting up libpam-modules:ppc64el (1.5.2-9.1ubuntu1) ... Setting up libapparmor1:ppc64el (4.0.0~alpha2-0ubuntu7) ... Setting up libargon2-1:ppc64el (0~20190702+dfsg-4) ... Setting up libcryptsetup12:ppc64el (2:2.6.1-5ubuntu1) ... Setting up libfdisk1:ppc64el (2.39.2-6ubuntu1) ... Setting up libkmod2:ppc64el (30+20230601-2ubuntu1) ... Setting up libsystemd-shared:ppc64el (255-1ubuntu1) ... Setting up systemd-dev (255-1ubuntu1) ... Setting up mount (2.39.2-6ubuntu1) ... Setting up systemd (255-1ubuntu1) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/pstore.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (255-1ubuntu1) ... (Reading database ... 13697 files and directories currently installed.) Preparing to unpack .../init_1.66ubuntu1_ppc64el.deb ... Unpacking init (1.66ubuntu1) over (1.65.2ubuntu1) ... Preparing to unpack .../libsmartcols1_2.39.2-6ubuntu1_ppc64el.deb ... Unpacking libsmartcols1:ppc64el (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up libsmartcols1:ppc64el (2.39.2-6ubuntu1) ... (Reading database ... 13698 files and directories currently installed.) Preparing to unpack .../uuid-runtime_2.39.2-6ubuntu1_ppc64el.deb ... Unpacking uuid-runtime (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Preparing to unpack .../libgpg-error-l10n_1.47-3build1_all.deb ... Unpacking libgpg-error-l10n (1.47-3build1) over (1.47-2) ... Preparing to unpack .../libgpg-error0_1.47-3build1_ppc64el.deb ... Unpacking libgpg-error0:ppc64el (1.47-3build1) over (1.47-2) ... Setting up libgpg-error0:ppc64el (1.47-3build1) ... (Reading database ... 13698 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.2-9.1ubuntu1_all.deb ... Unpacking libpam-runtime (1.5.2-9.1ubuntu1) over (1.5.2-6ubuntu1) ... Setting up libpam-runtime (1.5.2-9.1ubuntu1) ... (Reading database ... 13697 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1build1_all.deb ... Unpacking libsemanage-common (3.5-1build1) over (3.5-1) ... Setting up libsemanage-common (3.5-1build1) ... (Reading database ... 13697 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2_ppc64el.deb ... Unpacking libsepol2:ppc64el (3.5-2) over (3.5-1) ... Setting up libsepol2:ppc64el (3.5-2) ... (Reading database ... 13697 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1build1_ppc64el.deb ... Unpacking libsemanage2:ppc64el (3.5-1build1) over (3.5-1) ... Setting up libsemanage2:ppc64el (3.5-1build1) ... (Reading database ... 13697 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.4+20231209-1_ppc64el.deb ... Unpacking libncursesw6:ppc64el (6.4+20231209-1) over (6.4+20230625-2) ... Preparing to unpack .../libtinfo6_6.4+20231209-1_ppc64el.deb ... Unpacking libtinfo6:ppc64el (6.4+20231209-1) over (6.4+20230625-2) ... Setting up libtinfo6:ppc64el (6.4+20231209-1) ... (Reading database ... 13697 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-3ubuntu1_ppc64el.deb ... Unpacking passwd (1:4.13+dfsg1-3ubuntu1) over (1:4.13+dfsg1-1ubuntu1) ... Setting up passwd (1:4.13+dfsg1-3ubuntu1) ... (Reading database ... 13697 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-2ubuntu1_ppc64el.deb ... Unpacking libproc2-0:ppc64el (2:4.0.4-2ubuntu1) over (2:4.0.3-1ubuntu1) ... Preparing to unpack .../01-mawk_1.3.4.20231126-1_ppc64el.deb ... Unpacking mawk (1.3.4.20231126-1) over (1.3.4.20230730-1) ... Preparing to unpack .../02-procps_2%3a4.0.4-2ubuntu1_ppc64el.deb ... Unpacking procps (2:4.0.4-2ubuntu1) over (2:4.0.3-1ubuntu1) ... Preparing to unpack .../03-krb5-locales_1.20.1-5build1_all.deb ... Unpacking krb5-locales (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../04-readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) over (8.2-1.3) ... Preparing to unpack .../05-libreadline8_8.2-3_ppc64el.deb ... Unpacking libreadline8:ppc64el (8.2-3) over (8.2-1.3) ... Preparing to unpack .../06-libsqlite3-0_3.44.2-1_ppc64el.deb ... Unpacking libsqlite3-0:ppc64el (3.44.2-1) over (3.42.0-1) ... Preparing to unpack .../07-openssl_3.0.10-1ubuntu3_ppc64el.deb ... Unpacking openssl (3.0.10-1ubuntu3) over (3.0.10-1ubuntu2) ... Preparing to unpack .../08-bash-completion_1%3a2.11-8_all.deb ... Unpacking bash-completion (1:2.11-8) over (1:2.11-7) ... Preparing to unpack .../09-bsdextrautils_2.39.2-6ubuntu1_ppc64el.deb ... Unpacking bsdextrautils (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Preparing to unpack .../10-libpng16-16_1.6.40-2_ppc64el.deb ... Unpacking libpng16-16:ppc64el (1.6.40-2) over (1.6.40-1) ... Preparing to unpack .../11-xz-utils_5.4.5-0.1_ppc64el.deb ... Unpacking xz-utils (5.4.5-0.1) over (5.4.1-0.2) ... Preparing to unpack .../12-g++_4%3a13.2.0-2ubuntu1_ppc64el.deb ... Unpacking g++ (4:13.2.0-2ubuntu1) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../13-gcc_4%3a13.2.0-2ubuntu1_ppc64el.deb ... Unpacking gcc (4:13.2.0-2ubuntu1) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../14-cpp_4%3a13.2.0-2ubuntu1_ppc64el.deb ... Unpacking cpp (4:13.2.0-2ubuntu1) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../15-dpkg-dev_1.22.1ubuntu5_all.deb ... Unpacking dpkg-dev (1.22.1ubuntu5) over (1.22.0ubuntu1) ... Preparing to unpack .../16-libdpkg-perl_1.22.1ubuntu5_all.deb ... Unpacking libdpkg-perl (1.22.1ubuntu5) over (1.22.0ubuntu1) ... Preparing to unpack .../17-lto-disabled-list_44_all.deb ... Unpacking lto-disabled-list (44) over (43) ... Preparing to unpack .../18-libfakeroot_1.32.2-1_ppc64el.deb ... Unpacking libfakeroot:ppc64el (1.32.2-1) over (1.32.1-1) ... Preparing to unpack .../19-fakeroot_1.32.2-1_ppc64el.deb ... Unpacking fakeroot (1.32.2-1) over (1.32.1-1) ... Preparing to unpack .../20-optipng_0.7.7-3_ppc64el.deb ... Unpacking optipng (0.7.7-3) over (0.7.7-2build1) ... Preparing to unpack .../21-pinentry-curses_1.2.1-3ubuntu1_ppc64el.deb ... Unpacking pinentry-curses (1.2.1-3ubuntu1) over (1.2.1-1ubuntu1) ... Setting up lto-disabled-list (44) ... Setting up apt-utils (2.7.7) ... Setting up bsdextrautils (2.39.2-6ubuntu1) ... Setting up cpp-13 (13.2.0-9ubuntu1) ... Setting up init (1.66ubuntu1) ... Setting up libtirpc-common (1.3.4+ds-1) ... Setting up libsqlite3-0:ppc64el (3.44.2-1) ... Setting up binutils-common:ppc64el (2.41.50.20231214-1ubuntu1) ... Setting up linux-libc-dev:ppc64el (6.6.0-14.14) ... Setting up libctf-nobfd0:ppc64el (2.41.50.20231214-1ubuntu1) ... Setting up krb5-locales (1.20.1-5build1) ... Setting up libgomp1:ppc64el (13.2.0-9ubuntu1) ... Setting up libsframe1:ppc64el (2.41.50.20231214-1ubuntu1) ... Setting up libfakeroot:ppc64el (1.32.2-1) ... Setting up libkrb5support0:ppc64el (1.20.1-5build1) ... Setting up fakeroot (1.32.2-1) ... Setting up perl-modules-5.36 (5.36.0-10ubuntu1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.4.5-0.1) ... Setting up libquadmath0:ppc64el (13.2.0-9ubuntu1) ... Setting up libproc2-0:ppc64el (2:4.0.4-2ubuntu1) ... Setting up libpng16-16:ppc64el (1.6.40-2) ... Setting up libatomic1:ppc64el (13.2.0-9ubuntu1) ... Setting up libncursesw6:ppc64el (6.4+20231209-1) ... Setting up libk5crypto3:ppc64el (1.20.1-5build1) ... Setting up libubsan1:ppc64el (13.2.0-9ubuntu1) ... Setting up uuid-runtime (2.39.2-6ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up cpp (4:13.2.0-2ubuntu1) ... Setting up libasan8:ppc64el (13.2.0-9ubuntu1) ... Setting up procps (2:4.0.4-2ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20231126-1) ... Setting up libkrb5-3:ppc64el (1.20.1-5build1) ... Setting up libtsan2:ppc64el (13.2.0-9ubuntu1) ... Setting up libbinutils:ppc64el (2.41.50.20231214-1ubuntu1) ... Setting up libc-dev-bin (2.38-3ubuntu1) ... Setting up openssl (3.0.10-1ubuntu3) ... Setting up libgpg-error-l10n (1.47-3build1) ... Setting up readline-common (8.2-3) ... Setting up libcc1-0:ppc64el (13.2.0-9ubuntu1) ... Setting up liblsan0:ppc64el (13.2.0-9ubuntu1) ... Setting up libitm1:ppc64el (13.2.0-9ubuntu1) ... Setting up libgdbm6:ppc64el (1.23-5) ... Setting up libctf0:ppc64el (2.41.50.20231214-1ubuntu1) ... Setting up pinentry-curses (1.2.1-3ubuntu1) ... Setting up libreadline8:ppc64el (8.2-3) ... Setting up optipng (0.7.7-3) ... Setting up libgssapi-krb5-2:ppc64el (1.20.1-5build1) ... Setting up libgdbm-compat4:ppc64el (1.23-5) ... Setting up libgcc-13-dev:ppc64el (13.2.0-9ubuntu1) ... Setting up binutils-powerpc64le-linux-gnu (2.41.50.20231214-1ubuntu1) ... Setting up libperl5.36:ppc64el (5.36.0-10ubuntu1) ... Setting up libtirpc3:ppc64el (1.3.4+ds-1) ... Setting up binutils (2.41.50.20231214-1ubuntu1) ... Setting up perl (5.36.0-10ubuntu1) ... Setting up libtirpc-dev:ppc64el (1.3.4+ds-1) ... Setting up gcc-13 (13.2.0-9ubuntu1) ... Setting up libdpkg-perl (1.22.1ubuntu5) ... Setting up libnsl2:ppc64el (1.3.0-3) ... Setting up gcc (4:13.2.0-2ubuntu1) ... Setting up dpkg-dev (1.22.1ubuntu5) ... Setting up libnsl-dev:ppc64el (1.3.0-3) ... Setting up libc6-dev:ppc64el (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:ppc64el (13.2.0-9ubuntu1) ... Setting up g++-13 (13.2.0-9ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.14) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27576143 ppc64el noble-proposed -c chroot:build-PACKAGEBUILD-27576143 --arch=ppc64el --dist=noble-proposed --nolog augustus_3.5.0+dfsg-4build1.dsc Initiating build PACKAGEBUILD-27576143 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:15 UTC 2023 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-ppc64el-002.buildd +==============================================================================+ | augustus 3.5.0+dfsg-4build1 (ppc64el) Tue, 19 Dec 2023 15:13:28 +0000 | +==============================================================================+ Package: augustus Version: 3.5.0+dfsg-4build1 Source Version: 3.5.0+dfsg-4build1 Distribution: noble-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27576143/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/augustus-H89ODU/resolver-lNklPD' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- augustus_3.5.0+dfsg-4build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/augustus-H89ODU/augustus-3.5.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/augustus-H89ODU' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libsqlite3-dev, libboost-iostreams-dev, zlib1g-dev, libgsl-dev, liblpsolve55-dev, libbamtools-dev, libbz2-dev, libhts-dev, libncurses5-dev, libboost-serialization-dev, libssl-dev, libmysql++-dev, asciidoctor, python3, samtools, chrpath, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libsqlite3-dev, libboost-iostreams-dev, zlib1g-dev, libgsl-dev, liblpsolve55-dev, libbamtools-dev, libbz2-dev, libhts-dev, libncurses5-dev, libboost-serialization-dev, libssl-dev, libmysql++-dev, asciidoctor, python3, samtools, chrpath, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [474 B] Get:5 copy:/<>/apt_archive ./ Packages [560 B] Fetched 1991 B in 0s (138 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev chrpath debhelper debugedit default-libmysqlclient-dev dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libamd3 libarchive-zip-perl libbamtools-dev libbamtools2.5.2 libblas-dev libblas3 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost-serialization-dev libboost-serialization1.83-dev libboost-serialization1.83.0 libboost1.83-dev libbrotli1 libbsd0 libbtf2 libbz2-dev libcamd3 libccolamd3 libcholmod5 libcolamd3 libcurl3-gnutls libcurl4-gnutls-dev libcxsparse4 libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgsl-dev libgsl27 libgslcblas0 libhts-dev libhts3 libhtscodecs2 libicu-dev libicu74 libklu2 liblapack-dev liblapack3 libldap2 libldl3 liblpsolve55-dev liblzma-dev libmagic-mgc libmagic1 libmongoose3 libmysql++-dev libmysql++3v5 libmysqlclient-dev libmysqlclient21 libncurses-dev libncurses6 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librbio4 librtmp1 libruby libruby3.1 libsasl2-2 libsasl2-modules-db libspex2 libspqr4 libsqlite3-dev libssh-4 libssl-dev libsub-override-perl libsuitesparse-dev libsuitesparseconfig7 libtool libuchardet0 libumfpack6 libxml2 libyaml-0-2 libzstd-dev m4 man-db media-types mysql-common netbase po-debconf python3 python3-minimal python3.11 python3.11-minimal rake ruby ruby-asciidoctor ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration samtools zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libbamtools-doc liblapack-doc libboost1.83-doc libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph1.83-dev libboost-graph-parallel1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi1.83-dev libboost-mpi-python1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.83-dev libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html icu-doc liblzma-doc libmysql++-doc ncurses-doc sqlite3-doc libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support ri ruby-dev bundler cwltool Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libgraphblas-dev libltdl-dev libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev chrpath debhelper debugedit default-libmysqlclient-dev dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libamd3 libarchive-zip-perl libbamtools-dev libbamtools2.5.2 libblas-dev libblas3 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost-serialization-dev libboost-serialization1.83-dev libboost-serialization1.83.0 libboost1.83-dev libbrotli1 libbsd0 libbtf2 libbz2-dev libcamd3 libccolamd3 libcholmod5 libcolamd3 libcurl3-gnutls libcurl4-gnutls-dev libcxsparse4 libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgsl-dev libgsl27 libgslcblas0 libhts-dev libhts3 libhtscodecs2 libicu-dev libicu74 libklu2 liblapack-dev liblapack3 libldap2 libldl3 liblpsolve55-dev liblzma-dev libmagic-mgc libmagic1 libmongoose3 libmysql++-dev libmysql++3v5 libmysqlclient-dev libmysqlclient21 libncurses-dev libncurses6 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librbio4 librtmp1 libruby libruby3.1 libsasl2-2 libsasl2-modules-db libspex2 libspqr4 libsqlite3-dev libssh-4 libssl-dev libsub-override-perl libsuitesparse-dev libsuitesparseconfig7 libtool libuchardet0 libumfpack6 libxml2 libyaml-0-2 libzstd-dev m4 man-db media-types mysql-common netbase po-debconf python3 python3-minimal python3.11 python3.11-minimal rake ruby ruby-asciidoctor ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration samtools sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 93.1 MB of archives. After this operation, 507 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [774 B] Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libpython3.11-minimal ppc64el 3.11.7-2 [840 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libexpat1 ppc64el 2.5.0-2 [96.2 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el python3.11-minimal ppc64el 3.11.7-2 [2332 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-minimal ppc64el 3.11.4-5ubuntu1 [26.9 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el media-types all 10.1.0 [27.5 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el netbase all 6.4 [13.1 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libpython3.11-stdlib ppc64el 3.11.7-2 [1972 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el python3.11 ppc64el 3.11.7-2 [583 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3-stdlib ppc64el 3.11.4-5ubuntu1 [9560 B] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3 ppc64el 3.11.4-5ubuntu1 [22.9 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libbsd0 ppc64el 0.11.7-4 [56.4 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libelf1 ppc64el 0.190-1 [67.4 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libicu74 ppc64el 74.2-1ubuntu1 [11.3 MB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.3build3 [836 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libyaml-0-2 ppc64el 0.2.5-1 [63.9 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libmagic-mgc ppc64el 1:5.45-2 [307 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libmagic1 ppc64el 1:5.45-2 [106 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el file ppc64el 1:5.45-2 [22.6 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el gettext-base ppc64el 0.21-14 [42.5 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libuchardet0 ppc64el 0.0.8-1 [78.7 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el groff-base ppc64el 1.23.0-3 [1108 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libedit2 ppc64el 3.1-20230828-1 [122 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libncurses6 ppc64el 6.4+20231209-1 [145 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libnghttp2-14 ppc64el 1.58.0-1 [87.6 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libpipeline1 ppc64el 1.5.7-1 [25.8 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libpsl5 ppc64el 0.21.2-1build1 [58.5 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el man-db ppc64el 2.12.0-1 [1268 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el rubygems-integration all 1.18 [5336 B] Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el rake all 13.0.6-3 [61.6 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby-net-telnet all 0.2.0-1 [13.3 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby-webrick all 1.8.1-1 [52.3 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby-xmlrpc all 0.3.2-2 [24.8 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libruby ppc64el 1:3.1 [3940 B] Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby-sdbm ppc64el 1.0.0-5build2 [18.0 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libruby3.1 ppc64el 3.1.2-7ubuntu3 [5534 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby3.1 ppc64el 3.1.2-7ubuntu3 [48.9 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby-rubygems all 3.4.20-1 [238 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby ppc64el 1:3.1 [3476 B] Get:40 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-asciidoctor all 2.0.20-1 [174 kB] Get:41 http://ftpmaster.internal/ubuntu noble/universe ppc64el asciidoctor all 2.0.20-1 [44.2 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el m4 ppc64el 1.4.19-4 [275 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el autoconf all 2.71-3 [339 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el autotools-dev all 20220109.1 [44.9 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el automake all 1:1.16.5-1.3 [558 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el autopoint all 0.21-14 [422 kB] Get:47 http://ftpmaster.internal/ubuntu noble/universe ppc64el chrpath ppc64el 0.16-2 [13.3 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libdebhelper-perl all 13.11.8ubuntu1 [85.9 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el libtool all 2.4.7-7 [166 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libsub-override-perl all 0.10-1 [10.0 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el libdw1 ppc64el 0.190-1 [294 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el debugedit ppc64el 1:5.0-5 [51.1 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el dwz ppc64el 0.15-1 [139 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el gettext ppc64el 0.21-14 [974 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el debhelper all 13.11.8ubuntu1 [940 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el mysql-common all 5.8+1.1.0 [6626 B] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmysqlclient21 ppc64el 8.0.35-1ubuntu2 [1319 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el libssl-dev ppc64el 3.0.10-1ubuntu3 [2630 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el libzstd-dev ppc64el 1.5.5+dfsg2-2 [482 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3ubuntu1 [902 kB] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmysqlclient-dev ppc64el 8.0.35-1ubuntu2 [1694 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main ppc64el default-libmysqlclient-dev ppc64el 1.1.0 [3016 B] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el icu-devtools ppc64el 74.2-1ubuntu1 [246 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el libsuitesparseconfig7 ppc64el 1:7.3.1+dfsg-2 [11.7 kB] Get:71 http://ftpmaster.internal/ubuntu noble/universe ppc64el libamd3 ppc64el 1:7.3.1+dfsg-2 [35.8 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libbamtools2.5.2 ppc64el 2.5.2+dfsg-5 [150 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libbamtools-dev ppc64el 2.5.2+dfsg-5 [291 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.11.0-2build1 [221 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas-dev ppc64el 3.11.0-2build1 [297 kB] Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost1.83-dev ppc64el 1.83.0-1ubuntu3 [10.7 MB] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-regex1.83.0 ppc64el 1.83.0-1ubuntu3 [344 kB] Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libicu-dev ppc64el 74.2-1ubuntu1 [12.5 MB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-regex1.83-dev ppc64el 1.83.0-1ubuntu3 [363 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libboost-iostreams1.83.0 ppc64el 1.83.0-1ubuntu3 [259 kB] Get:81 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libboost-iostreams1.83-dev ppc64el 1.83.0-1ubuntu3 [264 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libboost-iostreams-dev ppc64el 1.83.0.1ubuntu2 [4050 B] Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-serialization1.83.0 ppc64el 1.83.0-1ubuntu3 [345 kB] Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-serialization1.83-dev ppc64el 1.83.0-1ubuntu3 [398 kB] Get:85 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libboost-serialization-dev ppc64el 1.83.0.1ubuntu2 [4278 B] Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el libbrotli1 ppc64el 1.1.0-2 [408 kB] Get:87 http://ftpmaster.internal/ubuntu noble/universe ppc64el libbtf2 ppc64el 1:7.3.1+dfsg-2 [14.4 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-dev ppc64el 1.0.8-5build1 [49.3 kB] Get:89 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcamd3 ppc64el 1:7.3.1+dfsg-2 [29.7 kB] Get:90 http://ftpmaster.internal/ubuntu noble/universe ppc64el libccolamd3 ppc64el 1:7.3.1+dfsg-2 [30.3 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main ppc64el libcolamd3 ppc64el 1:7.3.1+dfsg-2 [20.8 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 13.2.0-9ubuntu1 [557 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.11.0-2build1 [2670 kB] Get:94 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcholmod5 ppc64el 1:7.3.1+dfsg-2 [693 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-4 [22.9 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-4 [65.5 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main ppc64el libldap2 ppc64el 2.6.6+dfsg-1~exp1ubuntu1 [228 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build4 [65.5 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main ppc64el libssh-4 ppc64el 0.10.5-3ubuntu1 [238 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main ppc64el libcurl3-gnutls ppc64el 8.4.0-2ubuntu1 [411 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main ppc64el libcurl4-gnutls-dev ppc64el 8.4.0-2ubuntu1 [519 kB] Get:102 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcxsparse4 ppc64el 1:7.3.1+dfsg-2 [98.7 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.18-1 [58.4 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate-dev ppc64el 1.18-1 [65.8 kB] Get:105 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgslcblas0 ppc64el 2.7.1+dfsg-6ubuntu1 [85.3 kB] Get:106 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgsl27 ppc64el 2.7.1+dfsg-6ubuntu1 [1064 kB] Get:107 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgsl-dev ppc64el 2.7.1+dfsg-6ubuntu1 [1400 kB] Get:108 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] Get:109 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma-dev ppc64el 5.4.5-0.1 [204 kB] Get:111 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts-dev ppc64el 1.18+ds-1 [6252 kB] Get:112 http://ftpmaster.internal/ubuntu noble/universe ppc64el libklu2 ppc64el 1:7.3.1+dfsg-2 [97.9 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack-dev ppc64el 3.11.0-2build1 [5734 kB] Get:114 http://ftpmaster.internal/ubuntu noble/universe ppc64el libldl3 ppc64el 1:7.3.1+dfsg-2 [13.9 kB] Get:115 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmongoose3 ppc64el 1:7.3.1+dfsg-2 [41.8 kB] Get:116 http://ftpmaster.internal/ubuntu noble/universe ppc64el libumfpack6 ppc64el 1:7.3.1+dfsg-2 [317 kB] Get:117 http://ftpmaster.internal/ubuntu noble/universe ppc64el librbio4 ppc64el 1:7.3.1+dfsg-2 [34.9 kB] Get:118 http://ftpmaster.internal/ubuntu noble/universe ppc64el libspqr4 ppc64el 1:7.3.1+dfsg-2 [182 kB] Get:119 http://ftpmaster.internal/ubuntu noble/universe ppc64el libspex2 ppc64el 1:7.3.1+dfsg-2 [40.0 kB] Get:120 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsuitesparse-dev ppc64el 1:7.3.1+dfsg-2 [1738 kB] Get:121 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblpsolve55-dev ppc64el 5.5.2.5-2build3 [532 kB] Get:122 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmysql++3v5 ppc64el 3.2.5-2.1 [114 kB] Get:123 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmysql++-dev ppc64el 3.2.5-2.1 [96.4 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main ppc64el libncurses-dev ppc64el 6.4+20231209-1 [483 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main ppc64el libsqlite3-dev ppc64el 3.44.2-1 [1007 kB] Get:126 http://ftpmaster.internal/ubuntu noble/universe ppc64el samtools ppc64el 1.19-1 [666 kB] Preconfiguring packages ... Fetched 93.1 MB in 24s (3898 kB/s) Selecting previously unselected package libpython3.11-minimal:ppc64el. (Reading database ... 13722 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.7-2_ppc64el.deb ... Unpacking libpython3.11-minimal:ppc64el (3.11.7-2) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../libexpat1_2.5.0-2_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.7-2_ppc64el.deb ... Unpacking python3.11-minimal (3.11.7-2) ... Setting up libpython3.11-minimal:ppc64el (3.11.7-2) ... Setting up libexpat1:ppc64el (2.5.0-2) ... Setting up python3.11-minimal (3.11.7-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 14036 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.4-5ubuntu1_ppc64el.deb ... Unpacking python3-minimal (3.11.4-5ubuntu1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libpython3.11-stdlib:ppc64el. Preparing to unpack .../3-libpython3.11-stdlib_3.11.7-2_ppc64el.deb ... Unpacking libpython3.11-stdlib:ppc64el (3.11.7-2) ... Selecting previously unselected package python3.11. Preparing to unpack .../4-python3.11_3.11.7-2_ppc64el.deb ... Unpacking python3.11 (3.11.7-2) ... Selecting previously unselected package libpython3-stdlib:ppc64el. Preparing to unpack .../5-libpython3-stdlib_3.11.4-5ubuntu1_ppc64el.deb ... Unpacking libpython3-stdlib:ppc64el (3.11.4-5ubuntu1) ... Setting up python3-minimal (3.11.4-5ubuntu1) ... Selecting previously unselected package python3. (Reading database ... 14470 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.4-5ubuntu1_ppc64el.deb ... Unpacking python3 (3.11.4-5ubuntu1) ... Selecting previously unselected package libbsd0:ppc64el. Preparing to unpack .../001-libbsd0_0.11.7-4_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.11.7-4) ... Selecting previously unselected package libelf1:ppc64el. Preparing to unpack .../002-libelf1_0.190-1_ppc64el.deb ... Unpacking libelf1:ppc64el (0.190-1) ... Selecting previously unselected package libicu74:ppc64el. Preparing to unpack .../003-libicu74_74.2-1ubuntu1_ppc64el.deb ... Unpacking libicu74:ppc64el (74.2-1ubuntu1) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../004-libxml2_2.9.14+dfsg-1.3build3_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.14+dfsg-1.3build3) ... Selecting previously unselected package libyaml-0-2:ppc64el. Preparing to unpack .../005-libyaml-0-2_0.2.5-1_ppc64el.deb ... Unpacking libyaml-0-2:ppc64el (0.2.5-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.45-2_ppc64el.deb ... Unpacking libmagic-mgc (1:5.45-2) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../007-libmagic1_1%3a5.45-2_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.45-2) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.45-2_ppc64el.deb ... Unpacking file (1:5.45-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.21-14_ppc64el.deb ... Unpacking gettext-base (0.21-14) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../010-libuchardet0_0.0.8-1_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.8-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.23.0-3_ppc64el.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package libedit2:ppc64el. Preparing to unpack .../012-libedit2_3.1-20230828-1_ppc64el.deb ... Unpacking libedit2:ppc64el (3.1-20230828-1) ... Selecting previously unselected package libncurses6:ppc64el. Preparing to unpack .../013-libncurses6_6.4+20231209-1_ppc64el.deb ... Unpacking libncurses6:ppc64el (6.4+20231209-1) ... Selecting previously unselected package libnghttp2-14:ppc64el. Preparing to unpack .../014-libnghttp2-14_1.58.0-1_ppc64el.deb ... Unpacking libnghttp2-14:ppc64el (1.58.0-1) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../015-libpipeline1_1.5.7-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.7-1) ... Selecting previously unselected package libpsl5:ppc64el. Preparing to unpack .../016-libpsl5_0.21.2-1build1_ppc64el.deb ... Unpacking libpsl5:ppc64el (0.21.2-1build1) ... Selecting previously unselected package man-db. Preparing to unpack .../017-man-db_2.12.0-1_ppc64el.deb ... Unpacking man-db (2.12.0-1) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../018-rubygems-integration_1.18_all.deb ... Unpacking rubygems-integration (1.18) ... Selecting previously unselected package rake. Preparing to unpack .../019-rake_13.0.6-3_all.deb ... Unpacking rake (13.0.6-3) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../020-ruby-net-telnet_0.2.0-1_all.deb ... Unpacking ruby-net-telnet (0.2.0-1) ... Selecting previously unselected package ruby-webrick. Preparing to unpack .../021-ruby-webrick_1.8.1-1_all.deb ... Unpacking ruby-webrick (1.8.1-1) ... Selecting previously unselected package ruby-xmlrpc. Preparing to unpack .../022-ruby-xmlrpc_0.3.2-2_all.deb ... Unpacking ruby-xmlrpc (0.3.2-2) ... Selecting previously unselected package libruby:ppc64el. Preparing to unpack .../023-libruby_1%3a3.1_ppc64el.deb ... Unpacking libruby:ppc64el (1:3.1) ... Selecting previously unselected package ruby-sdbm:ppc64el. Preparing to unpack .../024-ruby-sdbm_1.0.0-5build2_ppc64el.deb ... Unpacking ruby-sdbm:ppc64el (1.0.0-5build2) ... Selecting previously unselected package libruby3.1:ppc64el. Preparing to unpack .../025-libruby3.1_3.1.2-7ubuntu3_ppc64el.deb ... Unpacking libruby3.1:ppc64el (3.1.2-7ubuntu3) ... Selecting previously unselected package ruby3.1. Preparing to unpack .../026-ruby3.1_3.1.2-7ubuntu3_ppc64el.deb ... Unpacking ruby3.1 (3.1.2-7ubuntu3) ... Selecting previously unselected package ruby-rubygems. Preparing to unpack .../027-ruby-rubygems_3.4.20-1_all.deb ... Unpacking ruby-rubygems (3.4.20-1) ... Selecting previously unselected package ruby. Preparing to unpack .../028-ruby_1%3a3.1_ppc64el.deb ... Unpacking ruby (1:3.1) ... Selecting previously unselected package ruby-asciidoctor. Preparing to unpack .../029-ruby-asciidoctor_2.0.20-1_all.deb ... Unpacking ruby-asciidoctor (2.0.20-1) ... Selecting previously unselected package asciidoctor. Preparing to unpack .../030-asciidoctor_2.0.20-1_all.deb ... Unpacking asciidoctor (2.0.20-1) ... Selecting previously unselected package m4. Preparing to unpack .../031-m4_1.4.19-4_ppc64el.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../032-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../033-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../034-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../035-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package chrpath. Preparing to unpack .../036-chrpath_0.16-2_ppc64el.deb ... Unpacking chrpath (0.16-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../037-libdebhelper-perl_13.11.8ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.11.8ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../038-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../039-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../040-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../041-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../042-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../043-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libdw1:ppc64el. Preparing to unpack .../044-libdw1_0.190-1_ppc64el.deb ... Unpacking libdw1:ppc64el (0.190-1) ... Selecting previously unselected package debugedit. Preparing to unpack .../045-debugedit_1%3a5.0-5_ppc64el.deb ... Unpacking debugedit (1:5.0-5) ... Selecting previously unselected package dwz. Preparing to unpack .../046-dwz_0.15-1_ppc64el.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../047-gettext_0.21-14_ppc64el.deb ... Unpacking gettext (0.21-14) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../048-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../049-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../050-debhelper_13.11.8ubuntu1_all.deb ... Unpacking debhelper (13.11.8ubuntu1) ... Selecting previously unselected package mysql-common. Preparing to unpack .../051-mysql-common_5.8+1.1.0_all.deb ... Unpacking mysql-common (5.8+1.1.0) ... Selecting previously unselected package libmysqlclient21:ppc64el. Preparing to unpack .../052-libmysqlclient21_8.0.35-1ubuntu2_ppc64el.deb ... Unpacking libmysqlclient21:ppc64el (8.0.35-1ubuntu2) ... Selecting previously unselected package libssl-dev:ppc64el. Preparing to unpack .../053-libssl-dev_3.0.10-1ubuntu3_ppc64el.deb ... Unpacking libssl-dev:ppc64el (3.0.10-1ubuntu3) ... Selecting previously unselected package libzstd-dev:ppc64el. Preparing to unpack .../054-libzstd-dev_1.5.5+dfsg2-2_ppc64el.deb ... Unpacking libzstd-dev:ppc64el (1.5.5+dfsg2-2) ... Selecting previously unselected package zlib1g-dev:ppc64el. Preparing to unpack .../055-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_ppc64el.deb ... Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ... Selecting previously unselected package libmysqlclient-dev. Preparing to unpack .../056-libmysqlclient-dev_8.0.35-1ubuntu2_ppc64el.deb ... Unpacking libmysqlclient-dev (8.0.35-1ubuntu2) ... Selecting previously unselected package default-libmysqlclient-dev:ppc64el. Preparing to unpack .../057-default-libmysqlclient-dev_1.1.0_ppc64el.deb ... Unpacking default-libmysqlclient-dev:ppc64el (1.1.0) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../058-icu-devtools_74.2-1ubuntu1_ppc64el.deb ... Unpacking icu-devtools (74.2-1ubuntu1) ... Selecting previously unselected package libsuitesparseconfig7:ppc64el. Preparing to unpack .../059-libsuitesparseconfig7_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libsuitesparseconfig7:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package libamd3:ppc64el. Preparing to unpack .../060-libamd3_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libamd3:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package libbamtools2.5.2:ppc64el. Preparing to unpack .../061-libbamtools2.5.2_2.5.2+dfsg-5_ppc64el.deb ... Unpacking libbamtools2.5.2:ppc64el (2.5.2+dfsg-5) ... Selecting previously unselected package libbamtools-dev:ppc64el. Preparing to unpack .../062-libbamtools-dev_2.5.2+dfsg-5_ppc64el.deb ... Unpacking libbamtools-dev:ppc64el (2.5.2+dfsg-5) ... Selecting previously unselected package libblas3:ppc64el. Preparing to unpack .../063-libblas3_3.11.0-2build1_ppc64el.deb ... Unpacking libblas3:ppc64el (3.11.0-2build1) ... Selecting previously unselected package libblas-dev:ppc64el. Preparing to unpack .../064-libblas-dev_3.11.0-2build1_ppc64el.deb ... Unpacking libblas-dev:ppc64el (3.11.0-2build1) ... Selecting previously unselected package libboost1.83-dev:ppc64el. Preparing to unpack .../065-libboost1.83-dev_1.83.0-1ubuntu3_ppc64el.deb ... Unpacking libboost1.83-dev:ppc64el (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-regex1.83.0:ppc64el. Preparing to unpack .../066-libboost-regex1.83.0_1.83.0-1ubuntu3_ppc64el.deb ... Unpacking libboost-regex1.83.0:ppc64el (1.83.0-1ubuntu3) ... Selecting previously unselected package libicu-dev:ppc64el. Preparing to unpack .../067-libicu-dev_74.2-1ubuntu1_ppc64el.deb ... Unpacking libicu-dev:ppc64el (74.2-1ubuntu1) ... Selecting previously unselected package libboost-regex1.83-dev:ppc64el. Preparing to unpack .../068-libboost-regex1.83-dev_1.83.0-1ubuntu3_ppc64el.deb ... Unpacking libboost-regex1.83-dev:ppc64el (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-iostreams1.83.0:ppc64el. Preparing to unpack .../069-libboost-iostreams1.83.0_1.83.0-1ubuntu3_ppc64el.deb ... Unpacking libboost-iostreams1.83.0:ppc64el (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-iostreams1.83-dev:ppc64el. Preparing to unpack .../070-libboost-iostreams1.83-dev_1.83.0-1ubuntu3_ppc64el.deb ... Unpacking libboost-iostreams1.83-dev:ppc64el (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-iostreams-dev:ppc64el. Preparing to unpack .../071-libboost-iostreams-dev_1.83.0.1ubuntu2_ppc64el.deb ... Unpacking libboost-iostreams-dev:ppc64el (1.83.0.1ubuntu2) ... Selecting previously unselected package libboost-serialization1.83.0:ppc64el. Preparing to unpack .../072-libboost-serialization1.83.0_1.83.0-1ubuntu3_ppc64el.deb ... Unpacking libboost-serialization1.83.0:ppc64el (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-serialization1.83-dev:ppc64el. Preparing to unpack .../073-libboost-serialization1.83-dev_1.83.0-1ubuntu3_ppc64el.deb ... Unpacking libboost-serialization1.83-dev:ppc64el (1.83.0-1ubuntu3) ... Selecting previously unselected package libboost-serialization-dev:ppc64el. Preparing to unpack .../074-libboost-serialization-dev_1.83.0.1ubuntu2_ppc64el.deb ... Unpacking libboost-serialization-dev:ppc64el (1.83.0.1ubuntu2) ... Selecting previously unselected package libbrotli1:ppc64el. Preparing to unpack .../075-libbrotli1_1.1.0-2_ppc64el.deb ... Unpacking libbrotli1:ppc64el (1.1.0-2) ... Selecting previously unselected package libbtf2:ppc64el. Preparing to unpack .../076-libbtf2_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libbtf2:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package libbz2-dev:ppc64el. Preparing to unpack .../077-libbz2-dev_1.0.8-5build1_ppc64el.deb ... Unpacking libbz2-dev:ppc64el (1.0.8-5build1) ... Selecting previously unselected package libcamd3:ppc64el. Preparing to unpack .../078-libcamd3_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libcamd3:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package libccolamd3:ppc64el. Preparing to unpack .../079-libccolamd3_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libccolamd3:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package libcolamd3:ppc64el. Preparing to unpack .../080-libcolamd3_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libcolamd3:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package libgfortran5:ppc64el. Preparing to unpack .../081-libgfortran5_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libgfortran5:ppc64el (13.2.0-9ubuntu1) ... Selecting previously unselected package liblapack3:ppc64el. Preparing to unpack .../082-liblapack3_3.11.0-2build1_ppc64el.deb ... Unpacking liblapack3:ppc64el (3.11.0-2build1) ... Selecting previously unselected package libcholmod5:ppc64el. Preparing to unpack .../083-libcholmod5_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libcholmod5:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package libsasl2-modules-db:ppc64el. Preparing to unpack .../084-libsasl2-modules-db_2.1.28+dfsg1-4_ppc64el.deb ... Unpacking libsasl2-modules-db:ppc64el (2.1.28+dfsg1-4) ... Selecting previously unselected package libsasl2-2:ppc64el. Preparing to unpack .../085-libsasl2-2_2.1.28+dfsg1-4_ppc64el.deb ... Unpacking libsasl2-2:ppc64el (2.1.28+dfsg1-4) ... Selecting previously unselected package libldap2:ppc64el. Preparing to unpack .../086-libldap2_2.6.6+dfsg-1~exp1ubuntu1_ppc64el.deb ... Unpacking libldap2:ppc64el (2.6.6+dfsg-1~exp1ubuntu1) ... Selecting previously unselected package librtmp1:ppc64el. Preparing to unpack .../087-librtmp1_2.4+20151223.gitfa8646d.1-2build4_ppc64el.deb ... Unpacking librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build4) ... Selecting previously unselected package libssh-4:ppc64el. Preparing to unpack .../088-libssh-4_0.10.5-3ubuntu1_ppc64el.deb ... Unpacking libssh-4:ppc64el (0.10.5-3ubuntu1) ... Selecting previously unselected package libcurl3-gnutls:ppc64el. Preparing to unpack .../089-libcurl3-gnutls_8.4.0-2ubuntu1_ppc64el.deb ... Unpacking libcurl3-gnutls:ppc64el (8.4.0-2ubuntu1) ... Selecting previously unselected package libcurl4-gnutls-dev:ppc64el. Preparing to unpack .../090-libcurl4-gnutls-dev_8.4.0-2ubuntu1_ppc64el.deb ... Unpacking libcurl4-gnutls-dev:ppc64el (8.4.0-2ubuntu1) ... Selecting previously unselected package libcxsparse4:ppc64el. Preparing to unpack .../091-libcxsparse4_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libcxsparse4:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package libdeflate0:ppc64el. Preparing to unpack .../092-libdeflate0_1.18-1_ppc64el.deb ... Unpacking libdeflate0:ppc64el (1.18-1) ... Selecting previously unselected package libdeflate-dev:ppc64el. Preparing to unpack .../093-libdeflate-dev_1.18-1_ppc64el.deb ... Unpacking libdeflate-dev:ppc64el (1.18-1) ... Selecting previously unselected package libgslcblas0:ppc64el. Preparing to unpack .../094-libgslcblas0_2.7.1+dfsg-6ubuntu1_ppc64el.deb ... Unpacking libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu1) ... Selecting previously unselected package libgsl27:ppc64el. Preparing to unpack .../095-libgsl27_2.7.1+dfsg-6ubuntu1_ppc64el.deb ... Unpacking libgsl27:ppc64el (2.7.1+dfsg-6ubuntu1) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../096-libgsl-dev_2.7.1+dfsg-6ubuntu1_ppc64el.deb ... Unpacking libgsl-dev (2.7.1+dfsg-6ubuntu1) ... Selecting previously unselected package libhtscodecs2:ppc64el. Preparing to unpack .../097-libhtscodecs2_1.6.0-1_ppc64el.deb ... Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... Selecting previously unselected package libhts3:ppc64el. Preparing to unpack .../098-libhts3_1.18+ds-1_ppc64el.deb ... Unpacking libhts3:ppc64el (1.18+ds-1) ... Selecting previously unselected package liblzma-dev:ppc64el. Preparing to unpack .../099-liblzma-dev_5.4.5-0.1_ppc64el.deb ... Unpacking liblzma-dev:ppc64el (5.4.5-0.1) ... Selecting previously unselected package libhts-dev:ppc64el. Preparing to unpack .../100-libhts-dev_1.18+ds-1_ppc64el.deb ... Unpacking libhts-dev:ppc64el (1.18+ds-1) ... Selecting previously unselected package libklu2:ppc64el. Preparing to unpack .../101-libklu2_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libklu2:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package liblapack-dev:ppc64el. Preparing to unpack .../102-liblapack-dev_3.11.0-2build1_ppc64el.deb ... Unpacking liblapack-dev:ppc64el (3.11.0-2build1) ... Selecting previously unselected package libldl3:ppc64el. Preparing to unpack .../103-libldl3_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libldl3:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package libmongoose3:ppc64el. Preparing to unpack .../104-libmongoose3_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libmongoose3:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package libumfpack6:ppc64el. Preparing to unpack .../105-libumfpack6_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libumfpack6:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package librbio4:ppc64el. Preparing to unpack .../106-librbio4_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking librbio4:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package libspqr4:ppc64el. Preparing to unpack .../107-libspqr4_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libspqr4:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package libspex2:ppc64el. Preparing to unpack .../108-libspex2_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libspex2:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package libsuitesparse-dev:ppc64el. Preparing to unpack .../109-libsuitesparse-dev_1%3a7.3.1+dfsg-2_ppc64el.deb ... Unpacking libsuitesparse-dev:ppc64el (1:7.3.1+dfsg-2) ... Selecting previously unselected package liblpsolve55-dev. Preparing to unpack .../110-liblpsolve55-dev_5.5.2.5-2build3_ppc64el.deb ... Unpacking liblpsolve55-dev (5.5.2.5-2build3) ... Selecting previously unselected package libmysql++3v5:ppc64el. Preparing to unpack .../111-libmysql++3v5_3.2.5-2.1_ppc64el.deb ... Unpacking libmysql++3v5:ppc64el (3.2.5-2.1) ... Selecting previously unselected package libmysql++-dev:ppc64el. Preparing to unpack .../112-libmysql++-dev_3.2.5-2.1_ppc64el.deb ... Unpacking libmysql++-dev:ppc64el (3.2.5-2.1) ... Selecting previously unselected package libncurses-dev:ppc64el. Preparing to unpack .../113-libncurses-dev_6.4+20231209-1_ppc64el.deb ... Unpacking libncurses-dev:ppc64el (6.4+20231209-1) ... Selecting previously unselected package libsqlite3-dev:ppc64el. Preparing to unpack .../114-libsqlite3-dev_3.44.2-1_ppc64el.deb ... Unpacking libsqlite3-dev:ppc64el (3.44.2-1) ... Selecting previously unselected package samtools. Preparing to unpack .../115-samtools_1.19-1_ppc64el.deb ... Unpacking samtools (1.19-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../116-sbuild-build-depends-main-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libhtscodecs2:ppc64el (1.6.0-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:ppc64el (1.5.7-1) ... Setting up mysql-common (5.8+1.1.0) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libmysqlclient21:ppc64el (8.0.35-1ubuntu2) ... Setting up libboost1.83-dev:ppc64el (1.83.0-1ubuntu3) ... Setting up libpsl5:ppc64el (0.21.2-1build1) ... Setting up libzstd-dev:ppc64el (1.5.5+dfsg2-2) ... Setting up libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu1) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:ppc64el (0.2.5-1) ... Setting up libboost-regex1.83.0:ppc64el (1.83.0-1ubuntu3) ... Setting up libdebhelper-perl (13.11.8ubuntu1) ... Setting up libbrotli1:ppc64el (1.1.0-2) ... Setting up libcxsparse4:ppc64el (1:7.3.1+dfsg-2) ... Setting up libnghttp2-14:ppc64el (1.58.0-1) ... Setting up libmagic1:ppc64el (1:5.45-2) ... Setting up libdeflate0:ppc64el (1.18-1) ... Setting up gettext-base (0.21-14) ... Setting up libgsl27:ppc64el (2.7.1+dfsg-6ubuntu1) ... Setting up m4 (1.4.19-4) ... Setting up rubygems-integration (1.18) ... Setting up libldl3:ppc64el (1:7.3.1+dfsg-2) ... Setting up file (1:5.45-2) ... Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg1-4) ... Setting up libboost-serialization1.83.0:ppc64el (1.83.0-1ubuntu3) ... Setting up libbtf2:ppc64el (1:7.3.1+dfsg-2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:ppc64el (3.11.0-2build1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up libsqlite3-dev:ppc64el (3.44.2-1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libboost-iostreams1.83.0:ppc64el (1.83.0-1ubuntu3) ... Setting up libncurses6:ppc64el (6.4+20231209-1) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up libssl-dev:ppc64el (3.0.10-1ubuntu3) ... Setting up autopoint (0.21-14) ... Setting up libmysql++3v5:ppc64el (3.2.5-2.1) ... Setting up libbamtools2.5.2:ppc64el (2.5.2+dfsg-5) ... Setting up libsasl2-2:ppc64el (2.1.28+dfsg1-4) ... Setting up libssh-4:ppc64el (0.10.5-3ubuntu1) ... Setting up libgfortran5:ppc64el (13.2.0-9ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up ruby-webrick (1.8.1-1) ... Setting up liblzma-dev:ppc64el (5.4.5-0.1) ... Setting up libicu74:ppc64el (74.2-1ubuntu1) ... Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ... Setting up libuchardet0:ppc64el (0.0.8-1) ... Setting up libsuitesparseconfig7:ppc64el (1:7.3.1+dfsg-2) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libbsd0:ppc64el (0.11.7-4) ... Setting up libdeflate-dev:ppc64el (1.18-1) ... Setting up libelf1:ppc64el (0.190-1) ... Setting up ruby-xmlrpc (0.3.2-2) ... Setting up libxml2:ppc64el (2.9.14+dfsg-1.3build3) ... Setting up libldap2:ppc64el (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up chrpath (0.16-2) ... Setting up libblas-dev:ppc64el (3.11.0-2build1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode Setting up libmysqlclient-dev (8.0.35-1ubuntu2) ... Setting up libbz2-dev:ppc64el (1.0.8-5build1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up default-libmysqlclient-dev:ppc64el (1.1.0) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:ppc64el (0.190-1) ... Setting up liblapack3:ppc64el (3.11.0-2build1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up libncurses-dev:ppc64el (6.4+20231209-1) ... Setting up gettext (0.21-14) ... Setting up libgsl-dev (2.7.1+dfsg-6ubuntu1) ... Setting up libamd3:ppc64el (1:7.3.1+dfsg-2) ... Setting up libtool (2.4.7-7) ... Setting up libcolamd3:ppc64el (1:7.3.1+dfsg-2) ... Setting up libpython3.11-stdlib:ppc64el (3.11.7-2) ... Setting up libedit2:ppc64el (3.1-20230828-1) ... Setting up libboost-serialization1.83-dev:ppc64el (1.83.0-1ubuntu3) ... Setting up libcurl3-gnutls:ppc64el (8.4.0-2ubuntu1) ... Setting up libcurl4-gnutls-dev:ppc64el (8.4.0-2ubuntu1) ... Setting up libcamd3:ppc64el (1:7.3.1+dfsg-2) ... Setting up libmongoose3:ppc64el (1:7.3.1+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libmysql++-dev:ppc64el (3.2.5-2.1) ... Setting up dh-autoreconf (20) ... Setting up librbio4:ppc64el (1:7.3.1+dfsg-2) ... Setting up libbamtools-dev:ppc64el (2.5.2+dfsg-5) ... Setting up liblapack-dev:ppc64el (3.11.0-2build1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode Setting up icu-devtools (74.2-1ubuntu1) ... Setting up libboost-serialization-dev:ppc64el (1.83.0.1ubuntu2) ... Setting up libccolamd3:ppc64el (1:7.3.1+dfsg-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up debugedit (1:5.0-5) ... Setting up libicu-dev:ppc64el (74.2-1ubuntu1) ... Setting up libpython3-stdlib:ppc64el (3.11.4-5ubuntu1) ... Setting up python3.11 (3.11.7-2) ... Setting up libcholmod5:ppc64el (1:7.3.1+dfsg-2) ... Setting up libhts3:ppc64el (1.18+ds-1) ... Setting up libspex2:ppc64el (1:7.3.1+dfsg-2) ... Setting up libspqr4:ppc64el (1:7.3.1+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:ppc64el (1.18+ds-1) ... Setting up python3 (3.11.4-5ubuntu1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up samtools (1.19-1) ... Setting up libklu2:ppc64el (1:7.3.1+dfsg-2) ... Setting up libboost-regex1.83-dev:ppc64el (1.83.0-1ubuntu3) ... Setting up libumfpack6:ppc64el (1:7.3.1+dfsg-2) ... Setting up libsuitesparse-dev:ppc64el (1:7.3.1+dfsg-2) ... Setting up libboost-iostreams1.83-dev:ppc64el (1.83.0-1ubuntu3) ... Setting up debhelper (13.11.8ubuntu1) ... Setting up libboost-iostreams-dev:ppc64el (1.83.0.1ubuntu2) ... Setting up liblpsolve55-dev (5.5.2.5-2build3) ... Setting up libruby:ppc64el (1:3.1) ... Setting up ruby-rubygems (3.4.20-1) ... Setting up ruby (1:3.1) ... Setting up ruby-asciidoctor (2.0.20-1) ... Setting up rake (13.0.6-3) ... Setting up asciidoctor (2.0.20-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up ruby-sdbm:ppc64el (1.0.0-5build2) ... Setting up libruby3.1:ppc64el (3.1.2-7ubuntu3) ... Setting up ruby3.1 (3.1.2-7ubuntu3) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for systemd (255-1ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:15 UTC 2023 ppc64el (ppc64le) Toolchain package versions: binutils_2.41.50.20231214-1ubuntu1 dpkg-dev_1.22.1ubuntu5 g++-13_13.2.0-9ubuntu1 gcc-13_13.2.0-9ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.7 apt-utils_2.7.7 asciidoctor_2.0.20-1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13ubuntu5 base-passwd_3.6.3 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41.50.20231214-1ubuntu1 binutils-common_2.41.50.20231214-1ubuntu1 binutils-powerpc64le-linux-gnu_2.41.50.20231214-1ubuntu1 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 chrpath_0.16-2 coreutils_9.4-2ubuntu1 cpp_4:13.2.0-2ubuntu1 cpp-13_13.2.0-9ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.8ubuntu1 debianutils_5.14 debugedit_1:5.0-5 default-libmysqlclient-dev_1.1.0 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.1ubuntu5 dpkg-dev_1.22.1ubuntu5 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-2ubuntu1 g++-13_13.2.0-9ubuntu1 gcc_4:13.2.0-2ubuntu1 gcc-13_13.2.0-9ubuntu1 gcc-13-base_13.2.0-9ubuntu1 gettext_0.21-14 gettext-base_0.21-14 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 icu-devtools_74.2-1ubuntu1 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-5build1 libacl1_2.3.1-3 libamd3_1:7.3.1+dfsg-2 libapparmor1_4.0.0~alpha2-0ubuntu7 libapt-pkg6.0_2.7.7 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4 libasan8_13.2.0-9ubuntu1 libassuan0_2.5.6-1 libatomic1_13.2.0-9ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbamtools-dev_2.5.2+dfsg-5 libbamtools2.5.2_2.5.2+dfsg-5 libbinutils_2.41.50.20231214-1ubuntu1 libblas-dev_3.11.0-2build1 libblas3_3.11.0-2build1 libblkid1_2.39.2-6ubuntu1 libboost-iostreams-dev_1.83.0.1ubuntu2 libboost-iostreams1.83-dev_1.83.0-1ubuntu3 libboost-iostreams1.83.0_1.83.0-1ubuntu3 libboost-regex1.83-dev_1.83.0-1ubuntu3 libboost-regex1.83.0_1.83.0-1ubuntu3 libboost-serialization-dev_1.83.0.1ubuntu2 libboost-serialization1.83-dev_1.83.0-1ubuntu3 libboost-serialization1.83.0_1.83.0-1ubuntu3 libboost1.83-dev_1.83.0-1ubuntu3 libbrotli1_1.1.0-2 libbsd0_0.11.7-4 libbtf2_1:7.3.1+dfsg-2 libbz2-1.0_1.0.8-5build1 libbz2-dev_1.0.8-5build1 libc-bin_2.38-3ubuntu1 libc-dev-bin_2.38-3ubuntu1 libc6_2.38-3ubuntu1 libc6-dev_2.38-3ubuntu1 libcamd3_1:7.3.1+dfsg-2 libcap-ng0_0.8.3-3 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-9ubuntu1 libccolamd3_1:7.3.1+dfsg-2 libcholmod5_1:7.3.1+dfsg-2 libcolamd3_1:7.3.1+dfsg-2 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-5ubuntu1 libctf-nobfd0_2.41.50.20231214-1ubuntu1 libctf0_2.41.50.20231214-1ubuntu1 libcurl3-gnutls_8.4.0-2ubuntu1 libcurl4-gnutls-dev_8.4.0-2ubuntu1 libcxsparse4_1:7.3.1+dfsg-2 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271ubuntu1 libdebhelper-perl_13.11.8ubuntu1 libdeflate-dev_1.18-1 libdeflate0_1.18-1 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdpkg-perl_1.22.1ubuntu5 libdw1_0.190-1 libedit2_3.1-20230828-1 libelf1_0.190-1 libexpat1_2.5.0-2 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.2-1 libfdisk1_2.39.2-6ubuntu1 libffi8_3.4.4-2 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-9ubuntu1 libgcc-s1_13.2.0-9ubuntu1 libgcrypt20_1.10.2-3ubuntu1 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgfortran5_13.2.0-9ubuntu1 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.1-4ubuntu6 libgomp1_13.2.0-9ubuntu1 libgpg-error-l10n_1.47-3build1 libgpg-error0_1.47-3build1 libgpm2_1.20.7-10build1 libgsl-dev_2.7.1+dfsg-6ubuntu1 libgsl27_2.7.1+dfsg-6ubuntu1 libgslcblas0_2.7.1+dfsg-6ubuntu1 libgssapi-krb5-2_1.20.1-5build1 libhogweed6_3.9.1-2 libhts-dev_1.18+ds-1 libhts3_1.18+ds-1 libhtscodecs2_1.6.0-1 libicu-dev_74.2-1ubuntu1 libicu74_74.2-1ubuntu1 libidn2-0_2.3.4-1build1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libitm1_13.2.0-9ubuntu1 libjansson4_2.14-2 libjson-c5_0.17-1 libk5crypto3_1.20.1-5build1 libkeyutils1_1.6.3-2 libklu2_1:7.3.1+dfsg-2 libkmod2_30+20230601-2ubuntu1 libkrb5-3_1.20.1-5build1 libkrb5support0_1.20.1-5build1 liblapack-dev_3.11.0-2build1 liblapack3_3.11.0-2build1 libldap2_2.6.6+dfsg-1~exp1ubuntu1 libldl3_1:7.3.1+dfsg-2 liblocale-gettext-perl_1.07-6 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblpsolve55-dev_5.5.2.5-2build3 liblsan0_13.2.0-9ubuntu1 liblz4-1_1.9.4-1 liblzma-dev_5.4.5-0.1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmongoose3_1:7.3.1+dfsg-2 libmount1_2.39.2-6ubuntu1 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libmysql++-dev_3.2.5-2.1 libmysql++3v5_3.2.5-2.1 libmysqlclient-dev_8.0.35-1ubuntu2 libmysqlclient21_8.0.35-1ubuntu2 libncurses-dev_6.4+20231209-1 libncurses6_6.4+20231209-1 libncursesw6_6.4+20231209-1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnss-nis_3.1-0ubuntu6 libnss-nisplus_1.3-0ubuntu6 libp11-kit0_0.25.3-2ubuntu2 libpam-modules_1.5.2-9.1ubuntu1 libpam-modules-bin_1.5.2-9.1ubuntu1 libpam-runtime_1.5.2-9.1ubuntu1 libpam0g_1.5.2-9.1ubuntu1 libpcre2-8-0_10.42-4ubuntu1 libperl5.36_5.36.0-10ubuntu1 libpipeline1_1.5.7-1 libpng16-16_1.6.40-2 libproc2-0_2:4.0.4-2ubuntu1 libpsl5_0.21.2-1build1 libpython3-stdlib_3.11.4-5ubuntu1 libpython3.11-minimal_3.11.7-2 libpython3.11-stdlib_3.11.7-2 libquadmath0_13.2.0-9ubuntu1 librbio4_1:7.3.1+dfsg-2 libreadline8_8.2-3 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libruby_1:3.1 libruby3.1_3.1.2-7ubuntu3 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2ubuntu1 libselinux1_3.5-1build2 libsemanage-common_3.5-1build1 libsemanage2_3.5-1build1 libsepol2_3.5-2 libsframe1_2.41.50.20231214-1ubuntu1 libsmartcols1_2.39.2-6ubuntu1 libspex2_1:7.3.1+dfsg-2 libspqr4_1:7.3.1+dfsg-2 libsqlite3-0_3.44.2-1 libsqlite3-dev_3.44.2-1 libss2_1.47.0-2ubuntu1 libssh-4_0.10.5-3ubuntu1 libssl-dev_3.0.10-1ubuntu3 libssl3_3.0.10-1ubuntu3 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 libsub-override-perl_0.10-1 libsuitesparse-dev_1:7.3.1+dfsg-2 libsuitesparseconfig7_1:7.3.1+dfsg-2 libsystemd-shared_255-1ubuntu1 libsystemd0_255-1ubuntu1 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan2_13.2.0-9ubuntu1 libubsan1_13.2.0-9ubuntu1 libuchardet0_0.0.8-1 libudev1_255-1ubuntu1 libumfpack6_1:7.3.1+dfsg-2 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.2-6ubuntu1 libxml2_2.9.14+dfsg-1.3build3 libxxhash0_0.8.2-2 libyaml-0-2_0.2.5-1 libzstd-dev_1.5.5+dfsg2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.0-14.14 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-3ubuntu1 logsave_1.47.0-2ubuntu1 lto-disabled-list_44 m4_1.4.19-4 make_4.3-4.1build1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 media-types_10.1.0 mount_2.39.2-6ubuntu1 mysql-common_5.8+1.1.0 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 netbase_6.4 openssl_3.0.10-1ubuntu3 optipng_0.7.7-3 passwd_1:4.13+dfsg1-3ubuntu1 patch_2.7.6-7build2 perl_5.36.0-10ubuntu1 perl-base_5.36.0-10ubuntu1 perl-modules-5.36_5.36.0-10ubuntu1 pinentry-curses_1.2.1-3ubuntu1 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-2ubuntu1 psmisc_23.6-1 python3_3.11.4-5ubuntu1 python3-minimal_3.11.4-5ubuntu1 python3.11_3.11.7-2 python3.11-minimal_3.11.7-2 rake_13.0.6-3 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 ruby_1:3.1 ruby-asciidoctor_2.0.20-1 ruby-net-telnet_0.2.0-1 ruby-rubygems_3.4.20-1 ruby-sdbm_1.0.0-5build2 ruby-webrick_1.8.1-1 ruby-xmlrpc_0.3.2-2 ruby3.1_3.1.2-7ubuntu3 rubygems-integration_1.18 samtools_1.19-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 systemd_255-1ubuntu1 systemd-dev_255-1ubuntu1 systemd-sysv_255-1ubuntu1 sysvinit-utils_3.08-3ubuntu1 tar_1.34+dfsg-1.2ubuntu2 tzdata_2023c-9ubuntu1 ubuntu-keyring_2023.11.28.1 usrmerge_35ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3ubuntu1 zlib1g-dev_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: augustus Binary: augustus, augustus-data, augustus-doc Architecture: any all Version: 3.5.0+dfsg-4build1 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: https://bioinf.uni-greifswald.de/augustus/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/augustus Vcs-Git: https://salsa.debian.org/med-team/augustus.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libsqlite3-dev, libboost-iostreams-dev, zlib1g-dev, libgsl-dev, liblpsolve55-dev, libbamtools-dev, libbz2-dev, libhts-dev, libncurses5-dev, libboost-serialization-dev, libssl-dev, libmysql++-dev, asciidoctor, python3, samtools, chrpath Package-List: augustus deb science optional arch=any augustus-data deb science optional arch=all augustus-doc deb doc optional arch=all Checksums-Sha1: a926ee500e46fc39c81376be09bbcca055b8a8ad 151813456 augustus_3.5.0+dfsg.orig.tar.xz 6a8da6627837382c9cd2a353b0dca83e6e07552a 20332 augustus_3.5.0+dfsg-4build1.debian.tar.xz Checksums-Sha256: 30a2a5200e7201a28383bebb98350eab9e043e38d0f7b825a1c8a614a6e68dc8 151813456 augustus_3.5.0+dfsg.orig.tar.xz 5ca71587bcf5ac1a84d1038e18c9a115ca76c92237c482b21949f6553fb68e3d 20332 augustus_3.5.0+dfsg-4build1.debian.tar.xz Files: 11cc56baea3047c128e2da42f7cf9dd0 151813456 augustus_3.5.0+dfsg.orig.tar.xz ce7122b3d11ece2520c82f0084e174e7 20332 augustus_3.5.0+dfsg-4build1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEVovyKmYzfL/Jprm3LIPbyOm9DjcFAmWBsBYACgkQLIPbyOm9 DjcDAA/9F51YRrUgYtM2RoGDlXSH46Q7Hf2sk4c4s/e76uNgssgOAJKVAfM/BNNu 6UPcpjd2bN3cOjj9iLnxIhMufbAV1r6x1O1NCM6NEhMhEqjnQPR0Qo9FJz909wDE RZlO7BmIY1xDBScjMWFkviqPEaG2WFTxfHUGIL4doOpOba8EKzWdfxNp/jOV0I2B Wad7vj5Jx2L3bOkRNYnrv4YHdabTjYEAw1Z0Kmbi9oSvOeCZ8i0QKXpnTMg5HInY IDWyPo9fn/5Hg2uRDvFaOvD6qjPTqcZSqY6kcpkxj+ruJ26jhUjlvW/A464Yg0Ms wYIZQhJDeIT0BalcXKByfU0IY3g5CKerj/byolhYzOSSieEko1LEi3WTUpW9XQnx JvOysl1NWqvGIZWxChZRN1EusAY3iLA7RNhXAQXBoFdw4FIf9KDmPqx23KCh55/2 M6F8drZYzM1N2wQUKZxS525XhAey8Kyz3Mt2jKqTMEBPl7941oq3T9oVZVAd6Avo LbHcusoa6eoQYKp43mBZ/wvN5ZwPeKGi0P7Hw3X6e8xzBVH++X9UrwcZnQh0G5tw /EmJOEW8nw9vYpJyw8jfbUrmSxNHjmpczy7K99rryt0PcXliLUToiTk39/YhkeJX Wr0X3Ri4VDRx/opGkDzfeQZcl4xGfrAnlhUVTZNbggh0j16IoYk= =vfrI -----END PGP SIGNATURE----- gpgv: Signature made Tue Dec 19 15:00:38 2023 UTC gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./augustus_3.5.0+dfsg-4build1.dsc: no acceptable signature found dpkg-source: info: extracting augustus in /<> dpkg-source: info: unpacking augustus_3.5.0+dfsg.orig.tar.xz dpkg-source: info: unpacking augustus_3.5.0+dfsg-4build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying search_config_path dpkg-source: info: applying set_installdir dpkg-source: info: applying interpreter_paths.patch dpkg-source: info: applying switch_cgp_testing_off.patch dpkg-source: info: applying disable-compare.patch dpkg-source: info: applying s390x-disable-filterbam-tests.patch dpkg-source: info: applying cstdint.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27576143 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27576143 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27576143 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package augustus dpkg-buildpackage: info: source version 3.5.0+dfsg-4build1 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' /usr/bin/make -C auxprogs/bam2hints clean make[2]: Entering directory '/<>/auxprogs/bam2hints' rm -f bam2hints.o bam2hints ../../bin/bam2hints make[2]: Leaving directory '/<>/auxprogs/bam2hints' /usr/bin/make -C auxprogs/homGeneMapping clean make[2]: Entering directory '/<>/auxprogs/homGeneMapping' cd src; make clean make[3]: Entering directory '/<>/auxprogs/homGeneMapping/src' rm -f homGeneMapping gene.o genome.o sqliteDB.o rm -f ../../../bin/homGeneMapping make[3]: Leaving directory '/<>/auxprogs/homGeneMapping/src' if [ -n /usr/bin/python3 ] ; then cd ../../tests/short && ./execute_test.py --clean homGeneMapping ; fi make[2]: Leaving directory '/<>/auxprogs/homGeneMapping' /usr/bin/make -C auxprogs/joingenes clean make[2]: Entering directory '/<>/auxprogs/joingenes' rm -f *.o joingenes ../../bin/joingenes make[2]: Leaving directory '/<>/auxprogs/joingenes' /usr/bin/make -C auxprogs/aln2wig clean make[2]: Entering directory '/<>/auxprogs/aln2wig' rm -f aln2wig aln2wig.o ../../bin/aln2wig make[2]: Leaving directory '/<>/auxprogs/aln2wig' /usr/bin/make -C auxprogs/bam2wig clean make[2]: Entering directory '/<>/auxprogs/bam2wig' rm -f bam2wig.o bam2wig rm -f ../../bin/bam2wig if [ -n /usr/bin/python3 ] ; then cd ../../tests/short && ./execute_test.py --clean bam2wig ; fi make[2]: Leaving directory '/<>/auxprogs/bam2wig' /usr/bin/make -C auxprogs/compileSpliceCands clean make[2]: Entering directory '/<>/auxprogs/compileSpliceCands' rm -f compileSpliceCands *.o ../../bin/compileSpliceCands make[2]: Leaving directory '/<>/auxprogs/compileSpliceCands' /usr/bin/make -C auxprogs/filterBam clean make[2]: Entering directory '/<>/auxprogs/filterBam' (cd src; make clean;) make[3]: Entering directory '/<>/auxprogs/filterBam/src' rm -f *~ filterBam.o initOptions.o printElapsedTime.o MatePairs.o PairednessCoverage.o BamToolsAccess.o rm -f filterBam rm -f ../../../bin/filterBam make[3]: Leaving directory '/<>/auxprogs/filterBam/src' make[2]: Leaving directory '/<>/auxprogs/filterBam' /usr/bin/make -C auxprogs/utrrnaseq clean make[2]: Entering directory '/<>/auxprogs/utrrnaseq' rm -rf build/test *.gff rm -rf build/Compute_UTRs.o build/Coord_Transform.o build/Genomic_Data.o build/Splice_Sites.o build/Supporting_Methods.o build/Test.o build/UTRs.o build/main.o build/Compute_UTRs.d build/Coord_Transform.d build/Genomic_Data.d build/Splice_Sites.d build/Supporting_Methods.d build/Test.d build/UTRs.d build/main.d build utrrnaseq make[2]: Leaving directory '/<>/auxprogs/utrrnaseq' rm -rf bin rm -f debian/*substvars rm -f debian/mansrc/*.1 find . -name "__pycache__" | xargs -r rm -r find src -name "*.o" | xargs -r rm find tests -name "*.sam.bam" | xargs -r rm find auxprogs -name "*.o" | xargs -r rm rm -rf tests/short/examples/results \ tests/short/auxprogs/bam2hints/tmp/ \ tests/short/auxprogs/bam2hints/result_files/ \ tests/short/auxprogs/filterbam/result_files/ rm -f auxprogs/utrrnaseq/Debug/utrrnaseq \ src/augustus \ src/cxxflags \ src/etraining \ src/fastBlockSearch \ src/getSeq \ src/load2db \ src/load2sqlitedb \ src/pp_simScore \ src/prepareAlign make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' mkdir -p bin /usr/bin/make -C auxprogs/aln2wig make[2]: Entering directory '/<>/auxprogs/aln2wig' cc -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-sign-compare -ansi -pedantic -O2 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -c aln2wig.c cc -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-sign-compare -ansi -pedantic -O2 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o aln2wig aln2wig.o mkdir -p ../../bin cp -f aln2wig ../../bin make[2]: Leaving directory '/<>/auxprogs/aln2wig' /usr/bin/make -C auxprogs/bam2hints make[2]: Entering directory '/<>/auxprogs/bam2hints' g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -O3 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I/usr/include/bamtools -c bam2hints.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -O3 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -L/usr/lib -Wl,-rpath,/usr/lib -I/usr/include/bamtools -o bam2hints bam2hints.o -lbamtools -lz mkdir -p ../../bin cp -f bam2hints ../../bin make[2]: Leaving directory '/<>/auxprogs/bam2hints' /usr/bin/make -C auxprogs/bam2wig make[2]: Entering directory '/<>/auxprogs/bam2wig' cc -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -O2 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I/usr/include/htslib -I/usr/local/include/htslib/ -c bam2wig.c cc -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -O2 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o bam2wig bam2wig.o -lhts -lz -lpthread mkdir -p ../../bin cp -f bam2wig ../../bin/bam2wig make[2]: Leaving directory '/<>/auxprogs/bam2wig' /usr/bin/make -C auxprogs/compileSpliceCands make[2]: Entering directory '/<>/auxprogs/compileSpliceCands' cc -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -pedantic -ansi -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -c compileSpliceCands.c compileSpliceCands.c: In function ‘getChromosome’: compileSpliceCands.c:216:9: warning: ‘__strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 216 | strncat(checkstring,chromosomename,strlen(chromosomename)); | ^ compileSpliceCands.c:216:9: note: length computed here 216 | strncat(checkstring,chromosomename,strlen(chromosomename)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compileSpliceCands.c: In function ‘parseLine’: compileSpliceCands.c:292:9: warning: ‘strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 292 | strncpy(d->name,tokens[0],LINEBUFFER); | ^ compileSpliceCands.c: In function ‘parseList’: compileSpliceCands.c:333:69: warning: ‘left’ may be used uninitialized [-Wmaybe-uninitialized] 333 | isCandidate = ((right->averageCoverage>=left->averageCoverage*threshold) || | ~~~~^~~~~~~~~~~~~~~~~ compileSpliceCands.c:314:14: note: ‘left’ was declared here 314 | Data left; | ^~~~ compileSpliceCands.c: In function ‘main’: compileSpliceCands.c:563:17: warning: ‘chromosomeLength’ may be used uninitialized [-Wmaybe-uninitialized] 563 | parseList(&L,actualChromosome,chromosomeLength,oldname,maxSpliceSiteDiff,threshold,maxIntronLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compileSpliceCands.c:416:18: note: ‘chromosomeLength’ was declared here 416 | long int chromosomeLength; | ^~~~~~~~~~~~~~~~ cc -Wall -pedantic -ansi -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c -o list.o list.c cc -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -pedantic -ansi -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o compileSpliceCands compileSpliceCands.o list.o compileSpliceCands.c: In function ‘getChromosome’: compileSpliceCands.c:216:9: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 216 | strncat(checkstring,chromosomename,strlen(chromosomename)); | ^ compileSpliceCands.c:216:9: note: length computed here 216 | strncat(checkstring,chromosomename,strlen(chromosomename)); | ^ cp -f compileSpliceCands ../../bin/compileSpliceCands make[2]: Leaving directory '/<>/auxprogs/compileSpliceCands' /usr/bin/make -C auxprogs/filterBam make[2]: Entering directory '/<>/auxprogs/filterBam' (cd src;make) make[3]: Entering directory '/<>/auxprogs/filterBam/src' g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wextra -Wpedantic -std=c++11 -O3 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I./headers -I/usr/include/bamtools -c filterBam.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wextra -Wpedantic -std=c++11 -O3 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I./headers -I/usr/include/bamtools -c functions/initOptions.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wextra -Wpedantic -std=c++11 -O3 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I./headers -I/usr/include/bamtools -c functions/printElapsedTime.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wextra -Wpedantic -std=c++11 -O3 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I./headers -I/usr/include/bamtools -c functions/MatePairs.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wextra -Wpedantic -std=c++11 -O3 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I./headers -I/usr/include/bamtools -c functions/PairednessCoverage.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wextra -Wpedantic -std=c++11 -O3 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I./headers -I/usr/include/bamtools -c BamToolsAccess.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wextra -Wpedantic -std=c++11 -O3 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -L/usr/lib -Wl,-rpath,/usr/lib -o filterBam filterBam.o initOptions.o printElapsedTime.o MatePairs.o PairednessCoverage.o BamToolsAccess.o -lbamtools -lz mkdir -p ../../../bin mv filterBam ../../../bin/filterBam make[3]: Leaving directory '/<>/auxprogs/filterBam/src' make[2]: Leaving directory '/<>/auxprogs/filterBam' /usr/bin/make -C auxprogs/homGeneMapping/src make[2]: Entering directory '/<>/auxprogs/homGeneMapping/src' g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DBOOST -DM_SQLITE -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -c gene.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DBOOST -DM_SQLITE -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -c genome.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DBOOST -DM_SQLITE -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -c sqliteDB.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DBOOST -DM_SQLITE -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I../include -o homGeneMapping main.cc gene.o genome.o sqliteDB.o -lsqlite3 mkdir -p ../../../bin/ cp -f homGeneMapping ../../../bin/homGeneMapping make[2]: Leaving directory '/<>/auxprogs/homGeneMapping/src' /usr/bin/make -C auxprogs/joingenes make[2]: Entering directory '/<>/auxprogs/joingenes' g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -std=gnu++0x -O2 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -c joingenes.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -std=gnu++0x -O2 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -c jg_transcript.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -std=gnu++0x -O2 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -c jg_ios.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -std=gnu++0x -O2 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o joingenes joingenes.o jg_transcript.o jg_ios.o mkdir -p ../../bin/ cp -f joingenes ../../bin/ make[2]: Leaving directory '/<>/auxprogs/joingenes' dh_auto_build make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>' mkdir -p bin mkdir -p bin cd src && make cd auxprogs && make make[3]: Entering directory '/<>/src' make[3]: Entering directory '/<>/auxprogs' cd aln2wig; make; make[4]: Entering directory '/<>/auxprogs/aln2wig' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[4]: 'aln2wig' is up to date. make[4]: Leaving directory '/<>/auxprogs/aln2wig' g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o genbank.o genbank.cc cd bam2hints; make; g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o properties.o properties.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o pp_profile.o pp_profile.cc make[4]: Entering directory '/<>/auxprogs/bam2hints' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/auxprogs/bam2hints' cd compileSpliceCands; make; make[4]: Entering directory '/<>/auxprogs/compileSpliceCands' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/auxprogs/compileSpliceCands' cd filterBam; make; make[4]: Entering directory '/<>/auxprogs/filterBam' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. (cd src;make) make[5]: Entering directory '/<>/auxprogs/filterBam/src' g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wextra -Wpedantic -std=c++11 -O3 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -L/usr/lib -Wl,-rpath,/usr/lib -o filterBam filterBam.o initOptions.o printElapsedTime.o MatePairs.o PairednessCoverage.o BamToolsAccess.o -lbamtools -lz mkdir -p ../../../bin mv filterBam ../../../bin/filterBam make[5]: Leaving directory '/<>/auxprogs/filterBam/src' make[4]: Leaving directory '/<>/auxprogs/filterBam' cd homGeneMapping; make; make[4]: Entering directory '/<>/auxprogs/homGeneMapping' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. (cd src; make) make[5]: Entering directory '/<>/auxprogs/homGeneMapping/src' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/<>/auxprogs/homGeneMapping/src' make[4]: Leaving directory '/<>/auxprogs/homGeneMapping' cd joingenes; make; make[4]: Entering directory '/<>/auxprogs/joingenes' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/auxprogs/joingenes' cd utrrnaseq; make; make[4]: Entering directory '/<>/auxprogs/utrrnaseq' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mkdir -p build Building file: src/Compute_UTRs.cpp Invoking: GCC C++ Compiler: g++ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -O0 -pedantic -fmessage-length=0 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -c -MMD -MP -MF"build/Compute_UTRs.d" -MT"build/Compute_UTRs.o" -o "build/Compute_UTRs.o" "src/Compute_UTRs.cpp" src/Compute_UTRs.cpp: In function ‘compute_UTRs(std::__cxx11::basic_string, std::allocator >)’: src/Compute_UTRs.cpp:142:18: warning: ‘chrom_pos’ may be used uninitialized [-Wmaybe-uninitialized] 142 | unsigned chrom_pos; //position for fixedStep only | ^~~~~~~~~ src/Compute_UTRs.cpp:251:69: warning: ‘step’ may be used uninitialized [-Wmaybe-uninitialized] 251 | for (int i = 0; i < (int)step; ++i) { | ^~~~~~~~~ src/Compute_UTRs.cpp:143:18: note: ‘step’ was declared here 143 | unsigned step; //Step for fixedStep only | ^~~~ src/Compute_UTRs.cpp:199:141: warning: ‘idx_former_scaff’ may be used uninitialized [-Wmaybe-uninitialized] 199 | const Genomic_Data::Scaff_plus_Gen_Data& curr_scaff = Genomic_Data::get_all_genes()[idx_former_scaff]; | ^ src/Compute_UTRs.cpp:150:18: note: ‘idx_former_scaff’ was declared here 150 | unsigned idx_former_scaff; | ^~~~~~~~~~~~~~~~ Finished building: src/Compute_UTRs.cpp Building file: src/Coord_Transform.cpp Invoking: GCC C++ Compiler: g++ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -O0 -pedantic -fmessage-length=0 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -c -MMD -MP -MF"build/Coord_Transform.d" -MT"build/Coord_Transform.o" -o "build/Coord_Transform.o" "src/Coord_Transform.cpp" g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o pp_hitseq.o pp_hitseq.cc src/Coord_Transform.cpp:25:59: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 25 | template struct finding_intron_greater_s : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from src/flex_vec.hpp:8, from src/Coord_Transform.cpp:5: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/Coord_Transform.cpp:33:58: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | template struct finding_intron_lesser_s : binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/Coord_Transform.cpp:41:59: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | template struct finding_intron_greater_e : binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/Coord_Transform.cpp:49:58: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 49 | template struct finding_intron_lesser_e : binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/Coord_Transform.cpp: In constructor ‘Coord_Transform::Coord_Transform(unsigned int, int, unsigned int, unsigned int, unsigned int, unsigned int, std::vector*)’: src/Coord_Transform.cpp:77:56: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_greater_s; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 77 | bind2nd(finding_intron_greater_s(), i)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ src/Coord_Transform.cpp:81:56: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_greater_e; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 81 | bind2nd(finding_intron_greater_e(), i)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ src/Coord_Transform.cpp:89:56: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_lesser_e; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 89 | bind2nd(finding_intron_lesser_e(), i)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ src/Coord_Transform.cpp:93:56: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_lesser_s; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 93 | bind2nd(finding_intron_lesser_s(), i)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ src/Coord_Transform.cpp: In member function ‘Coord_Transform::Coord_Transform(unsigned int, int, unsigned int, unsigned int, unsigned int, unsigned int, std::vector >*)’: src/Coord_Transform.cpp:148:70: warning: ‘skip_end’ may be used uninitialized [-Wmaybe-uninitialized] 148 | if (skip_start*dir > skip_end*dir) { | ~~~~~~~~^~~~ src/Coord_Transform.cpp:65:13: note: ‘skip_end’ was declared here 65 | int skip_end; //normally end position + W for this next intron | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o pp_scoring.o pp_scoring.cc Finished building: src/Coord_Transform.cpp Building file: src/Genomic_Data.cpp Invoking: GCC C++ Compiler: g++ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -O0 -pedantic -fmessage-length=0 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -c -MMD -MP -MF"build/Genomic_Data.d" -MT"build/Genomic_Data.o" -o "build/Genomic_Data.o" "src/Genomic_Data.cpp" g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o statemodel.o statemodel.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o namgene.o namgene.cc Finished building: src/Genomic_Data.cpp Building file: src/Splice_Sites.cpp Invoking: GCC C++ Compiler: g++ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -O0 -pedantic -fmessage-length=0 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -c -MMD -MP -MF"build/Splice_Sites.d" -MT"build/Splice_Sites.o" -o "build/Splice_Sites.o" "src/Splice_Sites.cpp" g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o types.o types.cc Finished building: src/Splice_Sites.cpp Building file: src/Supporting_Methods.cpp Invoking: GCC C++ Compiler: g++ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -O0 -pedantic -fmessage-length=0 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -c -MMD -MP -MF"build/Supporting_Methods.d" -MT"build/Supporting_Methods.o" -o "build/Supporting_Methods.o" "src/Supporting_Methods.cpp" g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o gene.o gene.cc Finished building: src/Supporting_Methods.cpp Building file: src/Test.cpp Invoking: GCC C++ Compiler: g++ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -O0 -pedantic -fmessage-length=0 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -c -MMD -MP -MF"build/Test.d" -MT"build/Test.o" -o "build/Test.o" "src/Test.cpp" Finished building: src/Test.cpp Building file: src/UTRs.cpp Invoking: GCC C++ Compiler: g++ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -O0 -pedantic -fmessage-length=0 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -c -MMD -MP -MF"build/UTRs.d" -MT"build/UTRs.o" -o "build/UTRs.o" "src/UTRs.cpp" src/UTRs.cpp:83:9: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 83 | binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from src/Genomic_Data.hpp:8, from src/UTRs.cpp:5: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/UTRs.cpp:92:9: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 92 | binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/UTRs.cpp:100:59: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 100 | template struct finding_intron_greater_s : binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/UTRs.cpp:108:58: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 108 | template struct finding_intron_lesser_s : binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/UTRs.cpp:116:59: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 116 | template struct finding_intron_greater_e : binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/UTRs.cpp:124:58: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 124 | template struct finding_intron_lesser_e : binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/UTRs.cpp:133:49: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 133 | template struct finding_repeat : binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/UTRs.cpp: In static member function ‘static unsigned int UTRs::get_max_pos(unsigned int, int, unsigned int, unsigned int, std::vector*)’: src/UTRs.cpp:181:64: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_coding_region_greater; _Tp = unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 181 | bind2nd(finding_coding_region_greater(), pos)) : | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ src/UTRs.cpp:183:65: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_coding_region_lesser; _Tp = unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 183 | bind2nd(finding_coding_region_lesser(), pos)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ src/UTRs.cpp: In static member function ‘static bool UTRs::repeat_in_UTR(unsigned int, unsigned int, std::vector*)’: src/UTRs.cpp:196:63: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_repeat; _Tp = unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 196 | it = find_if(repeats->begin(), repeats->end(), bind2nd(finding_repeat(), start)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ src/UTRs.cpp: In static member function ‘static std::vector UTRs::find_introns_in_range(unsigned int, unsigned int, int, std::vector*)’: src/UTRs.cpp:233:79: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_greater_s; _Tp = unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 233 | it = find_if(introns->begin(), introns->end(), bind2nd(finding_intron_greater_s(), start)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ src/UTRs.cpp:240:79: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_greater_e; _Tp = unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 240 | it = find_if(introns->begin(), introns->end(), bind2nd(finding_intron_greater_e(), start)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ src/UTRs.cpp:252:93: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_lesser_e; _Tp = unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 252 | it = find_if(reverse_introns.begin(), reverse_introns.end(), bind2nd(finding_intron_lesser_e(), start)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ src/UTRs.cpp:259:93: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_lesser_s; _Tp = unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 259 | it = find_if(reverse_introns.begin(), reverse_introns.end(), bind2nd(finding_intron_lesser_s(), start)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o evaluation.o evaluation.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o motif.o motif.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o geneticcode.o geneticcode.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o hints.o hints.cc Finished building: src/UTRs.cpp Building file: src/main.cpp Invoking: GCC C++ Compiler: g++ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -O0 -pedantic -fmessage-length=0 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -c -MMD -MP -MF"build/main.d" -MT"build/main.o" -o "build/main.o" "src/main.cpp" g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o extrinsicinfo.o extrinsicinfo.cc Finished building: src/main.cpp Building target: utrrnaseq Invoking: GCC C++ Linker g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -O0 -pedantic -fmessage-length=0 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o utrrnaseq build/Compute_UTRs.o build/Coord_Transform.o build/Genomic_Data.o build/Splice_Sites.o build/Supporting_Methods.o build/Test.o build/UTRs.o build/main.o g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o projectio.o projectio.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o intronmodel.o intronmodel.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o exonmodel.o exonmodel.cc Finished building target: utrrnaseq make[4]: Leaving directory '/<>/auxprogs/utrrnaseq' cd bam2wig; make; make[4]: Entering directory '/<>/auxprogs/bam2wig' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/auxprogs/bam2wig' make[3]: Leaving directory '/<>/auxprogs' g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o igenicmodel.o igenicmodel.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o utrmodel.o utrmodel.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o merkmal.o merkmal.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o vitmatrix.o vitmatrix.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o lldouble.o lldouble.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o mea.o mea.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o graph.o graph.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o meaPath.o meaPath.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o exoncand.o exoncand.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o randseqaccess.o randseqaccess.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o fasta.o fasta.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o ncmodel.o ncmodel.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o parser/parse.o parser/parse.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o scanner/lex.o scanner/lex.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o genomicMSA.o genomicMSA.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o geneMSA.o geneMSA.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o contTimeMC.o contTimeMC.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o codonevo.o codonevo.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o compgenepred.o compgenepred.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o phylotree.o phylotree.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o orthograph.o orthograph.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o orthoexon.o orthoexon.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o alignment.o alignment.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o speciesgraph.o speciesgraph.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o codonMSA.o codonMSA.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o train_logReg_param.o train_logReg_param.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o tokenizer.o tokenizer.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o sqliteDB.o sqliteDB.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o commontrain.o commontrain.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o igenictrain.o igenictrain.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o introntrain.o introntrain.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o exontrain.o exontrain.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o utrtrain.o utrtrain.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o dummy.o dummy.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o prepareAlign pp_prepare_align.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o pp_fastBlockSearcher.o pp_fastBlockSearcher.cc g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I../include -I/usr/include/lpsolve -I/usr/include/mysql -o pp_simScore pp_simscore.cc fasta.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I../include -I/usr/include/lpsolve -I/usr/include/mysql -o load2db load2db.cc fasta.o hints.o types.o properties.o lldouble.o -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 cp -f prepareAlign ../bin/ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I../include -I/usr/include/lpsolve -I/usr/include/mysql -o getSeq getSeq.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o dummy.o -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I../include -I/usr/include/lpsolve -I/usr/include/mysql -o load2sqlitedb load2sqlitedb.cc fasta.o hints.o types.o properties.o lldouble.o sqliteDB.o -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 cp -f load2sqlitedb ../bin/ echo "-Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE" > cxxflags g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I../include -I/usr/include/lpsolve -I/usr/include/mysql -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o dummy.o -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 pp_simscore.cc: In member function ‘__ct_base ’: pp_simscore.cc:33:30: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 33 | row = new Cell[length]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ extrinsicinfo.cc: In member function ‘__ct_base ’: extrinsicinfo.cc:1992:38: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 1992 | sourceKey = new string[numSources]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ cp -f load2db ../bin/ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I../include -I/usr/include/lpsolve -I/usr/include/mysql -o etraining etraining.cc commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 cp -f pp_simScore ../bin/ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I../include -I/usr/include/lpsolve -I/usr/include/mysql -o fastBlockSearch fastBlockSearch.cc pp_fastBlockSearcher.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lmysqlclient -lmysqlpp -lsqlite3 cp -f getSeq ../bin/ motif.cc: In member function ‘operator=.isra’: motif.cc:246:39: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 246 | windowProbs = new vector[n]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ motif.cc:247:37: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 247 | windowCounts = new vector[n]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ motif.cc: In member function ‘__ct_base ’: motif.cc:265:39: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 265 | windowProbs = new vector[n]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ motif.cc:266:37: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 266 | windowCounts = new vector[n]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ cp -f fastBlockSearch ../bin/ motif.cc: In member function ‘setProperties.constprop’: motif.cc:460:26: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 460 | zus = new BaseCount[n]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘assign’, inlined from ‘viterbiAndForward.constprop’ at namgene.cc:178:17: ../include/vitmatrix.hh:696:43: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 696 | data = new ViterbiColumnType[count]; | ^ /usr/include/c++/13/new: In member function ‘viterbiAndForward.constprop’: /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘assign’, inlined from ‘viterbiAndForward.constprop’ at namgene.cc:180:21: ../include/vitmatrix.hh:696:43: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 696 | data = new ViterbiColumnType[count]; | ^ /usr/include/c++/13/new: In member function ‘viterbiAndForward.constprop’: /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc: In function ‘init’: utrmodel.cc:264:56: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 264 | GCttsMotif = new Motif[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:262:57: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 262 | GCtataMotif = new Motif[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:260:60: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 260 | GCtssMotifTATA = new Motif[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:258:56: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 258 | GCtssMotif = new Motif[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:256:71: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 256 | GCtssup_emiprobs = new vector[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:254:66: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 254 | GCutr3_emiprobs = new PatMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:252:66: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 252 | GCutr5_emiprobs = new PatMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:250:70: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 250 | GCutr5init_emiprobs = new PatMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ exonmodel.cc: In function ‘init’: exonmodel.cc:396:67: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 396 | GCemiprobs = new FramedPatMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ exonmodel.cc:380:73: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 380 | GCtransInitBinProbs = new BinnedMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ exonmodel.cc:378:62: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 378 | GCtransInitMotif = new Motif[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ exonmodel.cc:376:69: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 376 | GCPls = new Matrix >[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ intronmodel.cc: In function ‘init’: intronmodel.cc:166:61: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 166 | GCemiprobs = new PatMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ intronmodel.cc:164:56: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 164 | GCassMotif = new Motif[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ intronmodel.cc: In function ‘init’: intronmodel.cc:166:61: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 166 | GCemiprobs = new PatMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ intronmodel.cc:164:56: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 164 | GCassMotif = new Motif[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ igenicmodel.cc: In function ‘init’: igenicmodel.cc:52:61: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 52 | GCemiprobs = new PatMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ igenicmodel.cc:54:69: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 54 | GCPls = new vector >[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ cp -f etraining ../bin/ motif.cc: In member function ‘read’: motif.cc:399:37: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 399 | windowProbs = new vector[n]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘assign’, inlined from ‘viterbiAndForward’ at namgene.cc:178:17: ../include/vitmatrix.hh:696:43: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 696 | data = new ViterbiColumnType[count]; | ^ /usr/include/c++/13/new: In member function ‘viterbiAndForward’: /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘setProperties’, inlined from ‘__ct ’ at ../include/motif.hh:138:15, inlined from ‘computeStairs’ at motif.cc:544:24: motif.cc:460:26: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 460 | zus = new BaseCount[n]; | ^ /usr/include/c++/13/new: In member function ‘computeStairs’: /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ ../include/vitmatrix.hh: In member function ‘assign’: ../include/vitmatrix.hh:696:43: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 696 | data = new ViterbiColumnType[count]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ extrinsicinfo.cc: In member function ‘__ct_base ’: extrinsicinfo.cc:1992:38: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 1992 | sourceKey = new string[numSources]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ exonmodel.cc: In function ‘init’: exonmodel.cc:396:67: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 396 | GCemiprobs = new FramedPatMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ exonmodel.cc:380:73: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 380 | GCtransInitBinProbs = new BinnedMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ exonmodel.cc:378:62: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 378 | GCtransInitMotif = new Motif[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ exonmodel.cc:376:69: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 376 | GCPls = new Matrix >[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ igenicmodel.cc: In function ‘init’: igenicmodel.cc:52:61: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 52 | GCemiprobs = new PatMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ igenicmodel.cc:54:69: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 54 | GCPls = new vector >[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc: In function ‘init’: utrmodel.cc:264:56: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 264 | GCttsMotif = new Motif[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:262:57: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 262 | GCtataMotif = new Motif[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:260:60: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 260 | GCtssMotifTATA = new Motif[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:258:56: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 258 | GCtssMotif = new Motif[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:256:71: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 256 | GCtssup_emiprobs = new vector[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:254:66: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 254 | GCutr3_emiprobs = new PatMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:252:66: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 252 | GCutr5_emiprobs = new PatMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ utrmodel.cc:250:70: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 250 | GCutr5init_emiprobs = new PatMMGroup[Constant::decomp_num_steps]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ cp -f augustus ../bin/ make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' asciidoctor -a docdate='' -b manpage --destination-dir=debian/mansrc/ mansrc/*adoc make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 test make[1]: Entering directory '/<>' mkdir -p bin mkdir -p bin cd src && make cd auxprogs && make make[2]: Entering directory '/<>/auxprogs' cd aln2wig; make; make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/auxprogs/aln2wig' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: 'aln2wig' is up to date. make[3]: Leaving directory '/<>/auxprogs/aln2wig' cd bam2hints; make; make[3]: Entering directory '/<>/auxprogs/bam2hints' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/auxprogs/bam2hints' echo "-Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wdate-time -D_FORTIFY_SOURCE=3 -DZIPINPUT -DCOMPGENEPRED -DM_MYSQL -DM_SQLITE" > cxxflags cd compileSpliceCands; make; make[2]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/auxprogs/compileSpliceCands' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/auxprogs/compileSpliceCands' cd filterBam; make; make[3]: Entering directory '/<>/auxprogs/filterBam' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. (cd src;make) make[4]: Entering directory '/<>/auxprogs/filterBam/src' g++ -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wextra -Wpedantic -std=c++11 -O3 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/augustus-3.5.0+dfsg-4build1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -L/usr/lib -Wl,-rpath,/usr/lib -o filterBam filterBam.o initOptions.o printElapsedTime.o MatePairs.o PairednessCoverage.o BamToolsAccess.o -lbamtools -lz mkdir -p ../../../bin mv filterBam ../../../bin/filterBam make[4]: Leaving directory '/<>/auxprogs/filterBam/src' make[3]: Leaving directory '/<>/auxprogs/filterBam' cd homGeneMapping; make; make[3]: Entering directory '/<>/auxprogs/homGeneMapping' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. (cd src; make) make[4]: Entering directory '/<>/auxprogs/homGeneMapping/src' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/auxprogs/homGeneMapping/src' make[3]: Leaving directory '/<>/auxprogs/homGeneMapping' cd joingenes; make; make[3]: Entering directory '/<>/auxprogs/joingenes' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/auxprogs/joingenes' cd utrrnaseq; make; make[3]: Entering directory '/<>/auxprogs/utrrnaseq' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mkdir -p build make[3]: Leaving directory '/<>/auxprogs/utrrnaseq' cd bam2wig; make; make[3]: Entering directory '/<>/auxprogs/bam2wig' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/auxprogs/bam2wig' make[2]: Leaving directory '/<>/auxprogs' If you run make test on a non-AMD64 architecture or a non-Linux system (like macOS), most tests will run without the --compare option! cd tests/short && ./execute_test.py examples test_utr_on (examples.test_examples.TestExamples.test_utr_on) ... ok test_hints_MPE (examples.test_examples.TestExamples.test_hints_MPE) ... ok test_training_new_species (examples.test_examples.TestExamples.test_training_new_species) ... ok test_ab_initio_prediction (examples.test_examples.TestExamples.test_ab_initio_prediction) ... ok test_format_and_error_out (examples.test_examples.TestExamples.test_format_and_error_out) ... ok test_cgp (examples.test_examples.TestExamples.test_cgp) ... ok test_cgp_sqlite (examples.test_examples.TestExamples.test_cgp_sqlite) ... ok test_cgp_sqlite_hints (examples.test_examples.TestExamples.test_cgp_sqlite_hints) ... ok ---------------------------------------------------------------------- Ran 8 tests in 365.170s OK Removing generated test files... ---------------------------------------------------------------------- Executing small test suite ---------------------------------------------------------------------- Creating SQLite database for cgp test cases... cd tests/short && ./execute_test.py --html bam2hints test_bam2hints (auxprogs.bam2hints.test_bam2hints.TestBam2Hints.test_bam2hints) ... ok test_bam2hints_pipes (auxprogs.bam2hints.test_bam2hints.TestBam2Hints.test_bam2hints_pipes) ... ok ---------------------------------------------------------------------- Ran 2 tests in 0.051s OK cd tests/short && ./execute_test.py --html bam2wig test_bam2wig (auxprogs.bam2wig.test_bam2wig.TestBam2Wig.test_bam2wig) ... ok test_bam2wig_region (auxprogs.bam2wig.test_bam2wig.TestBam2Wig.test_bam2wig_region) ... ok ---------------------------------------------------------------------- Ran 2 tests in 0.046s OK cd tests/short && ./execute_test.py --html filterbam test_no_options (auxprogs.filterbam.test_filterbam.TestFilterBam.test_no_options) ... ok test_no_minId_no_minCover (auxprogs.filterbam.test_filterbam.TestFilterBam.test_no_minId_no_minCover) ... ok test_no_minId (auxprogs.filterbam.test_filterbam.TestFilterBam.test_no_minId) ... ok test_no_minCover (auxprogs.filterbam.test_filterbam.TestFilterBam.test_no_minCover) ... ok test_minCover99 (auxprogs.filterbam.test_filterbam.TestFilterBam.test_minCover99) ... ok test_uniq (auxprogs.filterbam.test_filterbam.TestFilterBam.test_uniq) ... ok test_uniqThresh (auxprogs.filterbam.test_filterbam.TestFilterBam.test_uniqThresh) ... ok test_best (auxprogs.filterbam.test_filterbam.TestFilterBam.test_best) ... ok test_noIntrons (auxprogs.filterbam.test_filterbam.TestFilterBam.test_noIntrons) ... ok test_noIntrons_insertLimit (auxprogs.filterbam.test_filterbam.TestFilterBam.test_noIntrons_insertLimit) ... ok test_not_paired (auxprogs.filterbam.test_filterbam.TestFilterBam.test_not_paired) ... ok test_paired (auxprogs.filterbam.test_filterbam.TestFilterBam.test_paired) ... ok test_paired_pairwiseAlignments (auxprogs.filterbam.test_filterbam.TestFilterBam.test_paired_pairwiseAlignments) ... ok test_pairwiseAlignments_2 (auxprogs.filterbam.test_filterbam.TestFilterBam.test_pairwiseAlignments_2) ... ok test_paired_maxIntronLen (auxprogs.filterbam.test_filterbam.TestFilterBam.test_paired_maxIntronLen) ... ok test_paired_pairBedFile (auxprogs.filterbam.test_filterbam.TestFilterBam.test_paired_pairBedFile) ... ok test_commonGeneFile (auxprogs.filterbam.test_filterbam.TestFilterBam.test_commonGeneFile) ... ok test_calmd_seq_with_equalsigns_no_options (auxprogs.filterbam.test_filterbam.TestFilterBam.test_calmd_seq_with_equalsigns_no_options) ... ok test_calmd_no_options (auxprogs.filterbam.test_filterbam.TestFilterBam.test_calmd_no_options) ... ok test_calmd_seq_with_equalsigns_uniq (auxprogs.filterbam.test_filterbam.TestFilterBam.test_calmd_seq_with_equalsigns_uniq) ... ok test_calmd_uniq (auxprogs.filterbam.test_filterbam.TestFilterBam.test_calmd_uniq) ... ok test_calmd_seq_with_equalsigns_best (auxprogs.filterbam.test_filterbam.TestFilterBam.test_calmd_seq_with_equalsigns_best) ... ok test_calmd_best (auxprogs.filterbam.test_filterbam.TestFilterBam.test_calmd_best) ... ok test_calmd_seq_with_equalsigns_paired_pairwiseAlignments (auxprogs.filterbam.test_filterbam.TestFilterBam.test_calmd_seq_with_equalsigns_paired_pairwiseAlignments) ... ok test_calmd_paired_pairwiseAlignments (auxprogs.filterbam.test_filterbam.TestFilterBam.test_calmd_paired_pairwiseAlignments) ... ok ---------------------------------------------------------------------- Ran 25 tests in 0.715s OK make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' mkdir -p debian/augustus/usr/bin install bin/* debian/augustus/usr/bin install auxprogs/bam2wig/bam2wig \ debian/augustus/usr/bin install auxprogs/compileSpliceCands/compileSpliceCands \ debian/augustus/usr/bin install auxprogs/homGeneMapping/src/homGeneMapping \ debian/augustus/usr/bin install auxprogs/joingenes/joingenes \ debian/augustus/usr/bin mkdir -p debian/augustus/usr/share/augustus cp -r scripts debian/augustus/usr/share/augustus chmod -R -x debian/augustus/usr/share/augustus/scripts/* rm -rf debian/augustus/usr/share/augustus/scripts/*.patch \ debian/augustus/usr/share/augustus/scripts/executeTestCGP.py \ debian/augustus/usr/share/augustus/scripts/*.txt chmod +x debian/augustus/usr/share/augustus/scripts/checkUTR \ debian/augustus/usr/share/augustus/scripts/*.pl* mkdir -p debian/augustus-doc/usr/share/doc/augustus cp README* debian/augustus-doc/usr/share/doc/augustus cp docs/*.txt debian/augustus-doc/usr/share/doc/augustus cp docs/RUNNING* debian/augustus-doc/usr/share/doc/augustus cp docs/README* debian/augustus-doc/usr/share/doc/augustus cp docs/EXONCAND-MSAS-CGP.md \ debian/augustus-doc/usr/share/doc/augustus cp -r docs/tutorial \ debian/augustus-doc/usr/share/doc/augustus cp -r docs/tutorial-cgp \ debian/augustus-doc/usr/share/doc/augustus mkdir -p debian/augustus-data/usr/share/augustus cp -r config debian/augustus-data/usr/share/augustus find debian/augustus-data/usr/share/augustus \ -type f -exec chmod -x {} \; make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' chrpath -d debian/*/usr/bin/bam2hints chrpath -d debian/*/usr/bin/filterBam dh_install make[1]: Leaving directory '/<>' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs -k docs/HISTORY.TXT make[1]: Leaving directory '/<>' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -Xtutorial make[1]: Leaving directory '/<>' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/augustus/usr/bin/load2sqlitedb: Unknown DWARF DW_FORM_0x1f20 246c7716fd9212f4af1cdb26ae9f16ccaa37f1cd debugedit: debian/augustus/usr/bin/compileSpliceCands: Unknown DWARF DW_FORM_0x1f21 668da9d691a182f3bbabbe94b8c22678bfbe45cb debugedit: debian/augustus/usr/bin/load2db: Unknown DWARF DW_FORM_0x1f20 e65e4f23cd71841dec62810e202ce91628af96db debugedit: debian/augustus/usr/bin/getSeq: Unknown DWARF DW_FORM_0x1f21 2e305232cec0bdbea85b2463738d967c731298eb debugedit: debian/augustus/usr/bin/prepareAlign: Unknown DWARF DW_FORM_0x1f20 826a539b1c384072d1bbbe3203b38754e64f4c12 debugedit: debian/augustus/usr/bin/etraining: Unknown DWARF DW_FORM_0x1f21 a2bfce2b346fde8064b308d91824d237ba8a6672 debugedit: debian/augustus/usr/bin/joingenes: Unknown DWARF DW_FORM_0x1f21 30c5dc7f52045081b11a644129e2438d052b0707 debugedit: debian/augustus/usr/bin/homGeneMapping: Unknown DWARF DW_FORM_0x1f20 16c171f8d4bc2a0fcc3317c4370c44852dff82d6 debugedit: debian/augustus/usr/bin/filterBam: Unknown DWARF DW_FORM_0x1f20 9fe5fce18cbcd38dd7085c5575c7cfd88345f955 debugedit: debian/augustus/usr/bin/fastBlockSearch: Unknown DWARF DW_FORM_0x1f20 3d9d33da7703041db8ad87c7e9d2dfd2ca9f290e debugedit: debian/augustus/usr/bin/bam2wig: Unknown DWARF DW_FORM_0x1f20 be2a74a0ab6b7d25f1b7f3cab17f4dd4110a597f debugedit: debian/augustus/usr/bin/aln2wig: Unknown DWARF DW_FORM_0x1f20 66588c7e1a175cdb10f42d91a4333e523d99645e debugedit: debian/augustus/usr/bin/pp_simScore: Unknown DWARF DW_FORM_0x1f20 1487971ea26f0f97cf1d000ef10d565705321972 debugedit: debian/augustus/usr/bin/augustus: Unknown DWARF DW_FORM_0x1f21 0b2869d0808a9ad413495be8a264b4d13e2e8d26 debugedit: debian/augustus/usr/bin/bam2hints: Unknown DWARF DW_FORM_0x1f20 7745a8c7a105a64d22bf9b2fb79d2b45bb25790e dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package augustus: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package augustus: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing augustus-dbgsym (in debian/.debhelper/augustus/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing augustus (in debian/augustus); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/augustus/dbgsym-root/DEBIAN/control, package augustus-dbgsym, directory debian/.debhelper/augustus/dbgsym-root dpkg-deb: building package 'augustus-dbgsym' in 'debian/.debhelper/scratch-space/build-augustus/augustus-dbgsym_3.5.0+dfsg-4build1_ppc64el.deb'. pkgstripfiles: processing control file: debian/augustus/DEBIAN/control, package augustus, directory debian/augustus .. removing usr/share/doc/augustus/changelog.gz pkgstripfiles: Running PNG optimization (using 4 cpus) for package augustus ... pkgstripfiles: No PNG files. dpkg-deb: building package 'augustus' in '../augustus_3.5.0+dfsg-4build1_ppc64el.deb'. Renaming augustus-dbgsym_3.5.0+dfsg-4build1_ppc64el.deb to augustus-dbgsym_3.5.0+dfsg-4build1_ppc64el.ddeb dpkg-genbuildinfo --build=any -O../augustus_3.5.0+dfsg-4build1_ppc64el.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../augustus_3.5.0+dfsg-4build1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-12-19T15:24:29Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ augustus_3.5.0+dfsg-4build1_ppc64el.changes: -------------------------------------------- Format: 1.8 Date: Tue, 19 Dec 2023 15:46:05 +0100 Source: augustus Binary: augustus Built-For-Profiles: noudeb Architecture: ppc64el Version: 3.5.0+dfsg-4build1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: augustus - gene prediction in eukaryotic genomes Changes: augustus (3.5.0+dfsg-4build1) noble; urgency=medium . * No-change rebuild for boost defaults change. Checksums-Sha1: 7c0f19716e344bc4d1f59a289ddee4837796f9ba 18231686 augustus-dbgsym_3.5.0+dfsg-4build1_ppc64el.ddeb 20a44b483555d6fdc825440bfe2f08e679556da3 9273 augustus_3.5.0+dfsg-4build1_ppc64el.buildinfo 270c149062981c855011cca77f96c8678f410024 1941150 augustus_3.5.0+dfsg-4build1_ppc64el.deb Checksums-Sha256: 9032a778f214f6e34f446ef9efd34e9b16a1d38163d6a1d17b667cb80a0bb4e0 18231686 augustus-dbgsym_3.5.0+dfsg-4build1_ppc64el.ddeb 1a009d30037ef84a6c7d01dd3b488e64181d5b47fadbb561cde8f6bf5052bca8 9273 augustus_3.5.0+dfsg-4build1_ppc64el.buildinfo ef8bf546a13a2679ac96bdd5f3a4f8370ef55e4c2f8e7caf2905da5049a156f6 1941150 augustus_3.5.0+dfsg-4build1_ppc64el.deb Files: 598e9e1097c3603e5c4b6e09aed2abcd 18231686 debug optional augustus-dbgsym_3.5.0+dfsg-4build1_ppc64el.ddeb 6b58bd1c656da135c2d154e544c140de 9273 science optional augustus_3.5.0+dfsg-4build1_ppc64el.buildinfo 6c33cf708fad94a2fd28aa3d471cfb92 1941150 science optional augustus_3.5.0+dfsg-4build1_ppc64el.deb /<>/augustus_3.5.0+dfsg-4build1_ppc64el.changes.new could not be renamed to /<>/augustus_3.5.0+dfsg-4build1_ppc64el.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: augustus Binary: augustus augustus-dbgsym Architecture: ppc64el Version: 3.5.0+dfsg-4build1 Checksums-Md5: 598e9e1097c3603e5c4b6e09aed2abcd 18231686 augustus-dbgsym_3.5.0+dfsg-4build1_ppc64el.ddeb 6c33cf708fad94a2fd28aa3d471cfb92 1941150 augustus_3.5.0+dfsg-4build1_ppc64el.deb Checksums-Sha1: 7c0f19716e344bc4d1f59a289ddee4837796f9ba 18231686 augustus-dbgsym_3.5.0+dfsg-4build1_ppc64el.ddeb 270c149062981c855011cca77f96c8678f410024 1941150 augustus_3.5.0+dfsg-4build1_ppc64el.deb Checksums-Sha256: 9032a778f214f6e34f446ef9efd34e9b16a1d38163d6a1d17b667cb80a0bb4e0 18231686 augustus-dbgsym_3.5.0+dfsg-4build1_ppc64el.ddeb ef8bf546a13a2679ac96bdd5f3a4f8370ef55e4c2f8e7caf2905da5049a156f6 1941150 augustus_3.5.0+dfsg-4build1_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Tue, 19 Dec 2023 15:24:28 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: asciidoctor (= 2.0.20-1), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13ubuntu5), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), binutils (= 2.41.50.20231214-1ubuntu1), binutils-common (= 2.41.50.20231214-1ubuntu1), binutils-powerpc64le-linux-gnu (= 2.41.50.20231214-1ubuntu1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), ca-certificates (= 20230311ubuntu1), chrpath (= 0.16-2), coreutils (= 9.4-2ubuntu1), cpp (= 4:13.2.0-2ubuntu1), cpp-13 (= 13.2.0-9ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.8ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), default-libmysqlclient-dev (= 1.1.0), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1ubuntu5), dpkg-dev (= 1.22.1ubuntu5), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2ubuntu1), g++-13 (= 13.2.0-9ubuntu1), gcc (= 4:13.2.0-2ubuntu1), gcc-13 (= 13.2.0-9ubuntu1), gcc-13-base (= 13.2.0-9ubuntu1), gettext (= 0.21-14), gettext-base (= 0.21-14), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), icu-devtools (= 74.2-1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libamd3 (= 1:7.3.1+dfsg-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-9ubuntu1), libatomic1 (= 13.2.0-9ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbamtools-dev (= 2.5.2+dfsg-5), libbamtools2.5.2 (= 2.5.2+dfsg-5), libbinutils (= 2.41.50.20231214-1ubuntu1), libblas-dev (= 3.11.0-2build1), libblas3 (= 3.11.0-2build1), libblkid1 (= 2.39.2-6ubuntu1), libboost-iostreams-dev (= 1.83.0.1ubuntu2), libboost-iostreams1.83-dev (= 1.83.0-1ubuntu3), libboost-iostreams1.83.0 (= 1.83.0-1ubuntu3), libboost-regex1.83-dev (= 1.83.0-1ubuntu3), libboost-regex1.83.0 (= 1.83.0-1ubuntu3), libboost-serialization-dev (= 1.83.0.1ubuntu2), libboost-serialization1.83-dev (= 1.83.0-1ubuntu3), libboost-serialization1.83.0 (= 1.83.0-1ubuntu3), libboost1.83-dev (= 1.83.0-1ubuntu3), libbrotli1 (= 1.1.0-2), libbsd0 (= 0.11.7-4), libbtf2 (= 1:7.3.1+dfsg-2), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcamd3 (= 1:7.3.1+dfsg-2), libcap-ng0 (= 0.8.3-3), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-9ubuntu1), libccolamd3 (= 1:7.3.1+dfsg-2), libcholmod5 (= 1:7.3.1+dfsg-2), libcolamd3 (= 1:7.3.1+dfsg-2), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41.50.20231214-1ubuntu1), libctf0 (= 2.41.50.20231214-1ubuntu1), libcurl3-gnutls (= 8.4.0-2ubuntu1), libcurl4-gnutls-dev (= 8.4.0-2ubuntu1), libcxsparse4 (= 1:7.3.1+dfsg-2), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.11.8ubuntu1), libdeflate-dev (= 1.18-1), libdeflate0 (= 1.18-1), libdpkg-perl (= 1.22.1ubuntu5), libdw1 (= 0.190-1), libedit2 (= 3.1-20230828-1), libelf1 (= 0.190-1), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-2), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-9ubuntu1), libgcc-s1 (= 13.2.0-9ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgfortran5 (= 13.2.0-9ubuntu1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.1-4ubuntu6), libgomp1 (= 13.2.0-9ubuntu1), libgpg-error0 (= 1.47-3build1), libgsl-dev (= 2.7.1+dfsg-6ubuntu1), libgsl27 (= 2.7.1+dfsg-6ubuntu1), libgslcblas0 (= 2.7.1+dfsg-6ubuntu1), libgssapi-krb5-2 (= 1.20.1-5build1), libhogweed6 (= 3.9.1-2), libhts-dev (= 1.18+ds-1), libhts3 (= 1.18+ds-1), libhtscodecs2 (= 1.6.0-1), libicu-dev (= 74.2-1ubuntu1), libicu74 (= 74.2-1ubuntu1), libidn2-0 (= 2.3.4-1build1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-9ubuntu1), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libklu2 (= 1:7.3.1+dfsg-2), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), liblapack-dev (= 3.11.0-2build1), liblapack3 (= 3.11.0-2build1), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), libldl3 (= 1:7.3.1+dfsg-2), liblpsolve55-dev (= 5.5.2.5-2build3), liblsan0 (= 13.2.0-9ubuntu1), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.5-0.1), liblzma5 (= 5.4.5-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmongoose3 (= 1:7.3.1+dfsg-2), libmount1 (= 2.39.2-6ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libmysql++-dev (= 3.2.5-2.1), libmysql++3v5 (= 3.2.5-2.1), libmysqlclient-dev (= 8.0.35-1ubuntu2), libmysqlclient21 (= 8.0.35-1ubuntu2), libncurses-dev (= 6.4+20231209-1), libncurses6 (= 6.4+20231209-1), libncursesw6 (= 6.4+20231209-1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.58.0-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libp11-kit0 (= 0.25.3-2ubuntu2), libpam-modules (= 1.5.2-9.1ubuntu1), libpam-modules-bin (= 1.5.2-9.1ubuntu1), libpam-runtime (= 1.5.2-9.1ubuntu1), libpam0g (= 1.5.2-9.1ubuntu1), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.36 (= 5.36.0-10ubuntu1), libpipeline1 (= 1.5.7-1), libpsl5 (= 0.21.2-1build1), libpython3-stdlib (= 3.11.4-5ubuntu1), libpython3.11-minimal (= 3.11.7-2), libpython3.11-stdlib (= 3.11.7-2), libquadmath0 (= 13.2.0-9ubuntu1), librbio4 (= 1:7.3.1+dfsg-2), libreadline8 (= 8.2-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libruby (= 1:3.1), libruby3.1 (= 3.1.2-7ubuntu3), libsasl2-2 (= 2.1.28+dfsg1-4), libsasl2-modules-db (= 2.1.28+dfsg1-4), libseccomp2 (= 2.5.4-2ubuntu1), libselinux1 (= 3.5-1build2), libsframe1 (= 2.41.50.20231214-1ubuntu1), libsmartcols1 (= 2.39.2-6ubuntu1), libspex2 (= 1:7.3.1+dfsg-2), libspqr4 (= 1:7.3.1+dfsg-2), libsqlite3-0 (= 3.44.2-1), libsqlite3-dev (= 3.44.2-1), libssh-4 (= 0.10.5-3ubuntu1), libssl-dev (= 3.0.10-1ubuntu3), libssl3 (= 3.0.10-1ubuntu3), libstdc++-13-dev (= 13.2.0-9ubuntu1), libstdc++6 (= 13.2.0-9ubuntu1), libsub-override-perl (= 0.10-1), libsuitesparse-dev (= 1:7.3.1+dfsg-2), libsuitesparseconfig7 (= 1:7.3.1+dfsg-2), libsystemd0 (= 255-1ubuntu1), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-9ubuntu1), libubsan1 (= 13.2.0-9ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255-1ubuntu1), libumfpack6 (= 1:7.3.1+dfsg-2), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-6ubuntu1), libxml2 (= 2.9.14+dfsg-1.3build3), libyaml-0-2 (= 0.2.5-1), libzstd-dev (= 1.5.5+dfsg2-2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.0-14.14), login (= 1:4.13+dfsg1-3ubuntu1), lto-disabled-list (= 44), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), media-types (= 10.1.0), mysql-common (= 5.8+1.1.0), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), netbase (= 6.4), openssl (= 3.0.10-1ubuntu3), patch (= 2.7.6-7build2), perl (= 5.36.0-10ubuntu1), perl-base (= 5.36.0-10ubuntu1), perl-modules-5.36 (= 5.36.0-10ubuntu1), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.4-5ubuntu1), python3-minimal (= 3.11.4-5ubuntu1), python3.11 (= 3.11.7-2), python3.11-minimal (= 3.11.7-2), rake (= 13.0.6-3), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.2-0ubuntu6), ruby (= 1:3.1), ruby-asciidoctor (= 2.0.20-1), ruby-net-telnet (= 0.2.0-1), ruby-rubygems (= 3.4.20-1), ruby-sdbm (= 1.0.0-5build2), ruby-webrick (= 1.8.1-1), ruby-xmlrpc (= 0.3.2-2), ruby3.1 (= 3.1.2-7ubuntu3), rubygems-integration (= 1.18), samtools (= 1.19-1), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-3ubuntu1), tar (= 1.34+dfsg-1.2ubuntu2), tzdata (= 2023c-9ubuntu1), util-linux (= 2.39.2-6ubuntu1), xz-utils (= 5.4.5-0.1), zlib1g (= 1:1.3.dfsg-3ubuntu1), zlib1g-dev (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1702997165" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ augustus_3.5.0+dfsg-4build1_ppc64el.deb --------------------------------------- new Debian package, version 2.0. size 1941150 bytes: control archive=5104 bytes. 1619 bytes, 24 lines control 10479 bytes, 140 lines md5sums Package: augustus Version: 3.5.0+dfsg-4build1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 7974 Depends: libbamtools2.5.2 (>= 2.5.2+dfsg), libboost-iostreams1.83.0 (>= 1.83.0), libc6 (>= 2.38), libcolamd3 (>= 1:7.0.1), libgcc-s1 (>= 4.2), libgsl27 (>= 2.7.1), libhts3 (>= 1.17), libmysql++3v5 (>= 3.2.5-1~), libmysqlclient21 (>= 8.0.11), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 13.1), augustus-data Recommends: samtools Suggests: cdbfasta, diamond-aligner, libfile-which-perl, libparallel-forkmanager-perl, libyaml-perl, libdbd-mysql-perl, python3-biopython Section: science Priority: optional Homepage: https://bioinf.uni-greifswald.de/augustus/ Description: gene prediction in eukaryotic genomes AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes. drwxr-xr-x root/root 0 2023-12-19 14:46 ./ drwxr-xr-x root/root 0 2023-12-19 14:46 ./usr/ drwxr-xr-x root/root 0 2023-12-19 14:46 ./usr/bin/ -rwxr-xr-x root/root 67752 2023-12-19 14:46 ./usr/bin/aln2wig -rwxr-xr-x root/root 2629352 2023-12-19 14:46 ./usr/bin/augustus -rwxr-xr-x root/root 68736 2023-12-19 14:46 ./usr/bin/bam2hints -rwxr-xr-x root/root 67752 2023-12-19 14:46 ./usr/bin/bam2wig -rwxr-xr-x root/root 67848 2023-12-19 14:46 ./usr/bin/compileSpliceCands -rwxr-xr-x root/root 2037144 2023-12-19 14:46 ./usr/bin/etraining -rwxr-xr-x root/root 199112 2023-12-19 14:46 ./usr/bin/fastBlockSearch -rwxr-xr-x root/root 264560 2023-12-19 14:46 ./usr/bin/filterBam -rwxr-xr-x root/root 922296 2023-12-19 14:46 ./usr/bin/getSeq -rwxr-xr-x root/root 199480 2023-12-19 14:46 ./usr/bin/homGeneMapping -rwxr-xr-x root/root 199016 2023-12-19 14:46 ./usr/bin/joingenes -rwxr-xr-x root/root 133680 2023-12-19 14:46 ./usr/bin/load2db -rwxr-xr-x root/root 68224 2023-12-19 14:46 ./usr/bin/load2sqlitedb -rwxr-xr-x root/root 199480 2023-12-19 14:46 ./usr/bin/pp_simScore -rwxr-xr-x root/root 67968 2023-12-19 14:46 ./usr/bin/prepareAlign drwxr-xr-x root/root 0 2023-12-19 14:46 ./usr/share/ drwxr-xr-x root/root 0 2023-12-19 14:46 ./usr/share/augustus/ drwxr-xr-x root/root 0 2023-12-19 14:46 ./usr/share/augustus/scripts/ -rw-r--r-- root/root 12670 2023-12-19 14:46 ./usr/share/augustus/scripts/README.autoAug -rw-r--r-- root/root 12247 2023-12-19 14:46 ./usr/share/augustus/scripts/SplicedAlignment.pm -rwxr-xr-x root/root 20552 2023-12-19 14:46 ./usr/share/augustus/scripts/aa2nonred.pl -rwxr-xr-x root/root 3524 2023-12-19 14:46 ./usr/share/augustus/scripts/add_name_to_gff3.pl -rw-r--r-- root/root 27830 2023-12-19 14:46 ./usr/share/augustus/scripts/augustify.py -rwxr-xr-x root/root 3022 2023-12-19 14:46 ./usr/share/augustus/scripts/augustus2browser.pl -rwxr-xr-x root/root 389 2023-12-19 14:46 ./usr/share/augustus/scripts/augustus2gbrowse.pl -rwxr-xr-x root/root 54522 2023-12-19 14:46 ./usr/share/augustus/scripts/autoAug.pl -rwxr-xr-x root/root 23383 2023-12-19 14:46 ./usr/share/augustus/scripts/autoAugPred.pl -rwxr-xr-x root/root 45628 2023-12-19 14:46 ./usr/share/augustus/scripts/autoAugTrain.pl -rw-r--r-- root/root 12830 2023-12-19 14:46 ./usr/share/augustus/scripts/bamToWig.py -rwxr-xr-x root/root 3370 2023-12-19 14:46 ./usr/share/augustus/scripts/bedgraph2wig.pl -rwxr-xr-x root/root 4724 2023-12-19 14:46 ./usr/share/augustus/scripts/blat2gbrowse.pl -rwxr-xr-x root/root 32708 2023-12-19 14:46 ./usr/share/augustus/scripts/blat2hints.pl -rwxr-xr-x root/root 11321 2023-12-19 14:46 ./usr/share/augustus/scripts/block2prfl.pl -rwxr-xr-x root/root 2233 2023-12-19 14:46 ./usr/share/augustus/scripts/cegma2gff.pl -rwxr-xr-x root/root 3843 2023-12-19 14:46 ./usr/share/augustus/scripts/checkParamArchive.pl -rwxr-xr-x root/root 1151 2023-12-19 14:46 ./usr/share/augustus/scripts/checkUTR -rwxr-xr-x root/root 535 2023-12-19 14:46 ./usr/share/augustus/scripts/cleanDOSfasta.pl -rwxr-xr-x root/root 7558 2023-12-19 14:46 ./usr/share/augustus/scripts/clusterAndSplitGenes.pl -rwxr-xr-x root/root 1653 2023-12-19 14:46 ./usr/share/augustus/scripts/compare_masking.pl -rwxr-xr-x root/root 2364 2023-12-19 14:46 ./usr/share/augustus/scripts/computeFlankingRegion.pl -rwxr-xr-x root/root 7504 2023-12-19 14:46 ./usr/share/augustus/scripts/createAugustusJoblist.pl -rwxr-xr-x root/root 3244 2023-12-19 14:46 ./usr/share/augustus/scripts/del_from_prfl.pl -rwxr-xr-x root/root 9675 2023-12-19 14:46 ./usr/share/augustus/scripts/evalCGP.pl -rwxr-xr-x root/root 13247 2023-12-19 14:46 ./usr/share/augustus/scripts/eval_dualdecomp.pl -rwxr-xr-x root/root 3397 2023-12-19 14:46 ./usr/share/augustus/scripts/eval_multi_gtf.pl -rwxr-xr-x root/root 3043 2023-12-19 14:46 ./usr/share/augustus/scripts/exonerate2hints.pl -rwxr-xr-x root/root 1301 2023-12-19 14:46 ./usr/share/augustus/scripts/exoniphyDb2hints.pl -rw-r--r-- root/root 4609 2023-12-19 14:46 ./usr/share/augustus/scripts/extractAnno.py -rwxr-xr-x root/root 507 2023-12-19 14:46 ./usr/share/augustus/scripts/extractTranscriptEnds.pl -rwxr-xr-x root/root 446 2023-12-19 14:46 ./usr/share/augustus/scripts/filter-ppx.pl -rwxr-xr-x root/root 850 2023-12-19 14:46 ./usr/share/augustus/scripts/filterGenes.pl -rwxr-xr-x root/root 1071 2023-12-19 14:46 ./usr/share/augustus/scripts/filterGenesIn.pl -rwxr-xr-x root/root 2911 2023-12-19 14:46 ./usr/share/augustus/scripts/filterGenesIn_mRNAname.pl -rwxr-xr-x root/root 1716 2023-12-19 14:46 ./usr/share/augustus/scripts/filterGenesOut_mRNAname.pl -rwxr-xr-x root/root 1122 2023-12-19 14:46 ./usr/share/augustus/scripts/filterInFrameStopCodons.pl -rwxr-xr-x root/root 2923 2023-12-19 14:46 ./usr/share/augustus/scripts/filterMaf.pl -rwxr-xr-x root/root 17619 2023-12-19 14:46 ./usr/share/augustus/scripts/filterPSL.pl -rwxr-xr-x root/root 4465 2023-12-19 14:46 ./usr/share/augustus/scripts/filterShrimp.pl -rwxr-xr-x root/root 2081 2023-12-19 14:46 ./usr/share/augustus/scripts/filterSpliceHints.pl -rwxr-xr-x root/root 1649 2023-12-19 14:46 ./usr/share/augustus/scripts/findGffNamesInFasta.pl -rw-r--r-- root/root 4320 2023-12-19 14:46 ./usr/share/augustus/scripts/findRepetitiveProtSeqs.py -rw-r--r-- root/root 39199 2023-12-19 14:46 ./usr/share/augustus/scripts/fix_in_frame_stop_codon_genes.py -rwxr-xr-x root/root 3632 2023-12-19 14:46 ./usr/share/augustus/scripts/fix_joingenes_gtf.pl -rwxr-xr-x root/root 3098 2023-12-19 14:46 ./usr/share/augustus/scripts/gbSmallDNA2gff.pl -rw-r--r-- root/root 8078 2023-12-19 14:46 ./usr/share/augustus/scripts/gbrowse.conf -rwxr-xr-x root/root 3769 2023-12-19 14:46 ./usr/share/augustus/scripts/gbrowseold2gff3.pl -rwxr-xr-x root/root 7642 2023-12-19 14:46 ./usr/share/augustus/scripts/getAnnoFasta.pl -rw-r--r-- root/root 11651 2023-12-19 14:46 ./usr/share/augustus/scripts/getAnnoFastaFromJoingenes.py -rwxr-xr-x root/root 2038 2023-12-19 14:46 ./usr/share/augustus/scripts/getLinesMatching.pl -rwxr-xr-x root/root 2138 2023-12-19 14:46 ./usr/share/augustus/scripts/get_loci_from_gb.pl -rwxr-xr-x root/root 19301 2023-12-19 14:46 ./usr/share/augustus/scripts/gff2gbSmallDNA.pl -rw-r--r-- root/root 1758 2023-12-19 14:46 ./usr/share/augustus/scripts/gff2ps_mycustom -rwxr-xr-x root/root 4074 2023-12-19 14:46 ./usr/share/augustus/scripts/gffGetmRNA.pl -rwxr-xr-x root/root 3109 2023-12-19 14:46 ./usr/share/augustus/scripts/gp2othergp.pl -rwxr-xr-x root/root 7019 2023-12-19 14:46 ./usr/share/augustus/scripts/gtf2aa.pl -rwxr-xr-x root/root 9915 2023-12-19 14:46 ./usr/share/augustus/scripts/gtf2bed.pl -rwxr-xr-x root/root 15592 2023-12-19 14:46 ./usr/share/augustus/scripts/gtf2gff.pl -rwxr-xr-x root/root 2833 2023-12-19 14:46 ./usr/share/augustus/scripts/gth2gtf.pl -rwxr-xr-x root/root 12923 2023-12-19 14:46 ./usr/share/augustus/scripts/hal2maf_split.pl -rw-r--r-- root/root 9809 2023-12-19 14:46 ./usr/share/augustus/scripts/helpMod.pm -rwxr-xr-x root/root 1427 2023-12-19 14:46 ./usr/share/augustus/scripts/joinPeptides.pl -rwxr-xr-x root/root 9059 2023-12-19 14:46 ./usr/share/augustus/scripts/join_aug_pred.pl -rwxr-xr-x root/root 2665 2023-12-19 14:46 ./usr/share/augustus/scripts/join_mult_hints.pl -rwxr-xr-x root/root 3469 2023-12-19 14:46 ./usr/share/augustus/scripts/maf2conswig.pl -rwxr-xr-x root/root 468 2023-12-19 14:46 ./usr/share/augustus/scripts/makeMatchLists.pl -rwxr-xr-x root/root 16749 2023-12-19 14:46 ./usr/share/augustus/scripts/makeUtrTrainingSet.pl -rwxr-xr-x root/root 1658 2023-12-19 14:46 ./usr/share/augustus/scripts/maskNregions.pl -rwxr-xr-x root/root 1701 2023-12-19 14:46 ./usr/share/augustus/scripts/merge_masking.pl -rwxr-xr-x root/root 2490 2023-12-19 14:46 ./usr/share/augustus/scripts/moveParameters.pl -rwxr-xr-x root/root 20704 2023-12-19 14:46 ./usr/share/augustus/scripts/msa2prfl.pl -rwxr-xr-x root/root 7720 2023-12-19 14:46 ./usr/share/augustus/scripts/new_species.pl -rwxr-xr-x root/root 7092 2023-12-19 14:46 ./usr/share/augustus/scripts/opt_init_and_term_probs.pl -rwxr-xr-x root/root 85358 2023-12-19 14:46 ./usr/share/augustus/scripts/optimize_augustus.pl -rwxr-xr-x root/root 3606 2023-12-19 14:46 ./usr/share/augustus/scripts/parseSim4Output.pl -rwxr-xr-x root/root 17132 2023-12-19 14:46 ./usr/share/augustus/scripts/partition_gtf2gb.pl -rwxr-xr-x root/root 2108 2023-12-19 14:46 ./usr/share/augustus/scripts/pasapolyA2hints.pl -rwxr-xr-x root/root 3369 2023-12-19 14:46 ./usr/share/augustus/scripts/peptides2alternatives.pl -rwxr-xr-x root/root 6792 2023-12-19 14:46 ./usr/share/augustus/scripts/peptides2hints.pl -rwxr-xr-x root/root 2761 2023-12-19 14:46 ./usr/share/augustus/scripts/phastconsDB2hints.pl -rwxr-xr-x root/root 2330 2023-12-19 14:46 ./usr/share/augustus/scripts/polyA2hints.pl -rwxr-xr-x root/root 10582 2023-12-19 14:46 ./usr/share/augustus/scripts/prints2prfl.pl -rwxr-xr-x root/root 8032 2023-12-19 14:46 ./usr/share/augustus/scripts/pslMap.pl -rwxr-xr-x root/root 1971 2023-12-19 14:46 ./usr/share/augustus/scripts/randomSplit.pl -rwxr-xr-x root/root 1901 2023-12-19 14:46 ./usr/share/augustus/scripts/rename_species.pl -rwxr-xr-x root/root 1946 2023-12-19 14:46 ./usr/share/augustus/scripts/retroDB2hints.pl -rwxr-xr-x root/root 1403 2023-12-19 14:46 ./usr/share/augustus/scripts/rmRedundantHints.pl -rwxr-xr-x root/root 723 2023-12-19 14:46 ./usr/share/augustus/scripts/runAllSim4.pl -rwxr-xr-x root/root 4992 2023-12-19 14:46 ./usr/share/augustus/scripts/samMap.pl -rwxr-xr-x root/root 1159 2023-12-19 14:46 ./usr/share/augustus/scripts/scipiogff2gff.pl -rwxr-xr-x root/root 2221 2023-12-19 14:46 ./usr/share/augustus/scripts/setStopCodonFreqs.pl -rwxr-xr-x root/root 1215 2023-12-19 14:46 ./usr/share/augustus/scripts/simpleFastaHeaders.pl -rwxr-xr-x root/root 2606 2023-12-19 14:46 ./usr/share/augustus/scripts/simplifyFastaHeaders.pl -rwxr-xr-x root/root 2099 2023-12-19 14:46 ./usr/share/augustus/scripts/splitMfasta.pl -rwxr-xr-x root/root 861 2023-12-19 14:46 ./usr/share/augustus/scripts/split_wiggle.pl -rw-r--r-- root/root 5901 2023-12-19 14:46 ./usr/share/augustus/scripts/stringtie2fa.py -rwxr-xr-x root/root 2158 2023-12-19 14:46 ./usr/share/augustus/scripts/summarizeACGTcontent.pl -rwxr-xr-x root/root 19253 2023-12-19 14:46 ./usr/share/augustus/scripts/transMap2hints.pl -rwxr-xr-x root/root 1965 2023-12-19 14:46 ./usr/share/augustus/scripts/uniquePeptides.pl -rwxr-xr-x root/root 2395 2023-12-19 14:46 ./usr/share/augustus/scripts/utrgff2gbrowse.pl -rw-r--r-- root/root 6352 2023-12-19 14:46 ./usr/share/augustus/scripts/webserver-results.head -rw-r--r-- root/root 1033 2023-12-19 14:46 ./usr/share/augustus/scripts/webserver-results.tail -rwxr-xr-x root/root 1602 2023-12-19 14:46 ./usr/share/augustus/scripts/weedMaf.pl -rwxr-xr-x root/root 5374 2023-12-19 14:46 ./usr/share/augustus/scripts/wig2hints.pl -rwxr-xr-x root/root 2881 2023-12-19 14:46 ./usr/share/augustus/scripts/wigchoose.pl -rwxr-xr-x root/root 14137 2023-12-19 14:46 ./usr/share/augustus/scripts/writeResultsPage.pl -rwxr-xr-x root/root 10061 2023-12-19 14:46 ./usr/share/augustus/scripts/yaml2gff.1.4.pl drwxr-xr-x root/root 0 2023-12-19 14:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-19 14:46 ./usr/share/doc/augustus/ lrwxrwxrwx root/root 0 2023-12-19 14:46 ./usr/share/doc/augustus/HISTORY.TXT.gz -> changelog.gz -rw-r--r-- root/root 1478 2023-12-19 14:46 ./usr/share/doc/augustus/changelog.Debian.gz -rw-r--r-- root/root 2741 2022-11-06 01:02 ./usr/share/doc/augustus/copyright drwxr-xr-x root/root 0 2023-12-19 14:46 ./usr/share/man/ drwxr-xr-x root/root 0 2023-12-19 14:46 ./usr/share/man/man1/ -rw-r--r-- root/root 601 2023-12-19 14:46 ./usr/share/man/man1/aln2wig.1.gz -rw-r--r-- root/root 1759 2023-12-19 14:46 ./usr/share/man/man1/augustus.1.gz -rw-r--r-- root/root 1643 2023-12-19 14:46 ./usr/share/man/man1/bam2hints.1.gz -rw-r--r-- root/root 793 2023-12-19 14:46 ./usr/share/man/man1/bam2wig.1.gz -rw-r--r-- root/root 840 2023-12-19 14:46 ./usr/share/man/man1/compileSpliceCands.1.gz -rw-r--r-- root/root 722 2023-12-19 14:46 ./usr/share/man/man1/etraining.1.gz -rw-r--r-- root/root 1348 2023-12-19 14:46 ./usr/share/man/man1/fastBlockSearch.1.gz -rw-r--r-- root/root 1901 2023-12-19 14:46 ./usr/share/man/man1/filterBam.1.gz -rw-r--r-- root/root 1251 2023-12-19 14:46 ./usr/share/man/man1/getSeq.1.gz -rw-r--r-- root/root 1853 2023-12-19 14:46 ./usr/share/man/man1/homGeneMapping.1.gz -rw-r--r-- root/root 2042 2023-12-19 14:46 ./usr/share/man/man1/joingenes.1.gz -rw-r--r-- root/root 1255 2023-12-19 14:46 ./usr/share/man/man1/load2db.1.gz -rw-r--r-- root/root 1434 2023-12-19 14:46 ./usr/share/man/man1/load2sqlitedb.1.gz -rw-r--r-- root/root 2295 2023-12-19 14:46 ./usr/share/man/man1/pp_simScore.1.gz -rw-r--r-- root/root 678 2023-12-19 14:46 ./usr/share/man/man1/prepareAlign.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 1592048 Build-Time: 608 Distribution: noble-proposed Host Architecture: ppc64el Install-Time: 40 Job: augustus_3.5.0+dfsg-4build1.dsc Machine Architecture: ppc64el Package: augustus Package-Time: 661 Source-Version: 3.5.0+dfsg-4build1 Space: 1592048 Status: successful Version: 3.5.0+dfsg-4build1 -------------------------------------------------------------------------------- Finished at 2023-12-19T15:24:29Z Build needed 00:11:01, 1592048k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27576143 Scanning for processes to kill in build PACKAGEBUILD-27576143