RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-13 4.4.0-45-generic #66-Ubuntu SMP Wed Oct 19 14:12:37 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_140 python-lpbuildd_140 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.2 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.5. Syncing the system clock with the buildd NTP service... 7 Nov 02:42:57 ntpdate[1733]: adjust time server 10.211.37.1 offset -0.000029 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11155837', '/home/buildd/filecache-default/94f0b0f826e99ad354ce9a7a99ba3c310ddcc327'] Unpacking chroot for build PACKAGEBUILD-11155837 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11155837'] Mounting chroot for build PACKAGEBUILD-11155837 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11155837', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11155837 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11155837', 'amd64'] Updating debian chroot for build PACKAGEBUILD-11155837 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [92.1 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [95.6 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main amd64 Packages [1237 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [587 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe amd64 Packages [7857 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4562 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 Packages [128 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [64.1 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe amd64 Packages [370 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [204 kB] Fetched 15.5 MB in 4s (3324 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.24 perl-modules-5.24 The following packages will be upgraded: adduser base-files bash binutils cpp-6 diffutils dmsetup g++-6 gcc-6 gcc-6-base grep libapparmor1 libasan3 libasn1-8-heimdal libatomic1 libcc1-0 libcilkrts5 libcurl3-gnutls libdevmapper1.02.1 libgcc-6-dev libgcc1 libgomp1 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libitm1 libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2 liblsan0 liblzma5 libmpx2 libnettle6 libpng16-16 libquadmath0 libroken18-heimdal libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsqlite3-0 libstdc++-6-dev libstdc++6 libsystemd0 libtsan0 libubsan0 libudev1 libwind0-heimdal linux-libc-dev perl perl-base pinentry-curses systemd systemd-sysv tar tzdata ubuntu-keyring xz-utils 68 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 45.6 MB of archives. After this operation, 40.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty/main amd64 base-files amd64 9.6ubuntu6 [55.8 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 bash amd64 4.4-1ubuntu1 [624 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main amd64 diffutils amd64 1:3.5-1 [166 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main amd64 grep amd64 2.26-1 [153 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main amd64 perl-modules-5.24 all 5.24.1~rc3-3 [2661 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main amd64 libperl5.24 amd64 5.24.1~rc3-3 [3466 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main amd64 perl amd64 5.24.1~rc3-3 [237 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main amd64 perl-base amd64 5.24.1~rc3-3 [1341 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 tar amd64 1.29b-1.1 [232 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main amd64 libapparmor1 amd64 2.10.95-4ubuntu5.2 [30.2 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main amd64 liblzma5 amd64 5.2.2-1.2 [91.0 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libselinux1 amd64 2.6-2 [67.8 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main amd64 adduser all 3.113+nmu3ubuntu5 [161 kB] Get:14 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 systemd amd64 232-2 [2357 kB] Get:15 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libsystemd0 amd64 232-2 [210 kB] Get:16 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 systemd-sysv amd64 232-2 [13.3 kB] Get:17 http://ftpmaster.internal/ubuntu zesty/main amd64 libquadmath0 amd64 6.2.0-11ubuntu1 [132 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main amd64 libitm1 amd64 6.2.0-11ubuntu1 [27.8 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main amd64 libcc1-0 amd64 6.2.0-11ubuntu1 [31.1 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main amd64 libgomp1 amd64 6.2.0-11ubuntu1 [73.9 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main amd64 libatomic1 amd64 6.2.0-11ubuntu1 [9146 B] Get:22 http://ftpmaster.internal/ubuntu zesty/main amd64 libasan3 amd64 6.2.0-11ubuntu1 [307 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main amd64 liblsan0 amd64 6.2.0-11ubuntu1 [117 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main amd64 libtsan0 amd64 6.2.0-11ubuntu1 [260 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main amd64 libubsan0 amd64 6.2.0-11ubuntu1 [108 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main amd64 libcilkrts5 amd64 6.2.0-11ubuntu1 [40.8 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main amd64 libmpx2 amd64 6.2.0-11ubuntu1 [11.4 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main amd64 gcc-6-base amd64 6.2.0-11ubuntu1 [17.4 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main amd64 libstdc++6 amd64 6.2.0-11ubuntu1 [401 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main amd64 g++-6 amd64 6.2.0-11ubuntu1 [7381 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main amd64 libstdc++-6-dev amd64 6.2.0-11ubuntu1 [1399 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main amd64 libgcc-6-dev amd64 6.2.0-11ubuntu1 [2307 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main amd64 gcc-6 amd64 6.2.0-11ubuntu1 [7151 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main amd64 cpp-6 amd64 6.2.0-11ubuntu1 [6605 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main amd64 libgcc1 amd64 1:6.2.0-11ubuntu1 [38.0 kB] Get:36 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 binutils amd64 2.27-9ubuntu1 [2418 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main amd64 libsepol1 amd64 2.6-1 [220 kB] Get:38 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libsemanage-common all 2.6-1 [6832 B] Get:39 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libsemanage1 amd64 2.6-1 [82.6 kB] Get:40 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libudev1 amd64 232-2 [56.6 kB] Get:41 http://ftpmaster.internal/ubuntu zesty/main amd64 ubuntu-keyring all 2016.10.27 [16.6 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main amd64 tzdata all 2016i-1 [169 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/main amd64 libdevmapper1.02.1 amd64 2:1.02.133-1ubuntu1 [164 kB] Get:44 http://ftpmaster.internal/ubuntu zesty/main amd64 dmsetup amd64 2:1.02.133-1ubuntu1 [78.8 kB] Get:45 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libroken18-heimdal amd64 1.7~git20160703+dfsg-1 [41.0 kB] Get:46 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libasn1-8-heimdal amd64 1.7~git20160703+dfsg-1 [174 kB] Get:47 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libheimbase1-heimdal amd64 1.7~git20160703+dfsg-1 [29.2 kB] Get:48 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libhcrypto4-heimdal amd64 1.7~git20160703+dfsg-1 [88.0 kB] Get:49 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libwind0-heimdal amd64 1.7~git20160703+dfsg-1 [47.9 kB] Get:50 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libhx509-5-heimdal amd64 1.7~git20160703+dfsg-1 [107 kB] Get:51 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libsqlite3-0 amd64 3.15.1-1 [485 kB] Get:52 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libkrb5-26-heimdal amd64 1.7~git20160703+dfsg-1 [202 kB] Get:53 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libheimntlm0-heimdal amd64 1.7~git20160703+dfsg-1 [15.1 kB] Get:54 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libgssapi3-heimdal amd64 1.7~git20160703+dfsg-1 [96.7 kB] Get:55 http://ftpmaster.internal/ubuntu zesty/main amd64 libhogweed4 amd64 3.3-1 [135 kB] Get:56 http://ftpmaster.internal/ubuntu zesty/main amd64 libnettle6 amd64 3.3-1 [92.4 kB] Get:57 http://ftpmaster.internal/ubuntu zesty/main amd64 libksba8 amd64 1.3.5-2 [92.6 kB] Get:58 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libsasl2-modules-db amd64 2.1.27~72-g88d82a3+dfsg-1 [15.1 kB] Get:59 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libsasl2-2 amd64 2.1.27~72-g88d82a3+dfsg-1 [48.8 kB] Get:60 http://ftpmaster.internal/ubuntu zesty/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu5 [161 kB] Get:61 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libslang2 amd64 2.3.1-4ubuntu1 [422 kB] Get:62 http://ftpmaster.internal/ubuntu zesty/main amd64 pinentry-curses amd64 0.9.7-8 [31.9 kB] Get:63 http://ftpmaster.internal/ubuntu zesty/main amd64 xz-utils amd64 5.2.2-1.2 [83.2 kB] Get:64 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libgssapi-krb5-2 amd64 1.15~beta1-1 [120 kB] Get:65 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libkrb5-3 amd64 1.15~beta1-1 [274 kB] Get:66 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libkrb5support0 amd64 1.15~beta1-1 [31.8 kB] Get:67 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libk5crypto3 amd64 1.15~beta1-1 [83.9 kB] Get:68 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libcurl3-gnutls amd64 7.50.1-1ubuntu2 [188 kB] Get:69 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libpng16-16 amd64 1.6.26-1 [174 kB] Get:70 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 linux-libc-dev amd64 4.8.0-27.29 [856 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 45.6 MB in 7s (5873 kB/s) (Reading database ... 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Setting up libcurl3-gnutls:amd64 (7.50.1-1ubuntu2) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11155837', 'amd64', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=zesty-proposed', '--purge=never', '--nolog', '-A', 'avogadro_1.2.0-1build1.dsc'] Initiating build PACKAGEBUILD-11155837 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-45-generic #66-Ubuntu SMP Wed Oct 19 14:12:37 UTC 2016 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-13.buildd +==============================================================================+ | avogadro 1.2.0-1build1 (amd64) 07 Nov 2016 02:43 | +==============================================================================+ Package: avogadro Version: 1.2.0-1build1 Source Version: 1.2.0-1build1 Distribution: zesty-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/avogadro-XCorJN/avogadro-1.2.0' with '<>' I: NOTICE: Log filtering will replace 'build/avogadro-XCorJN' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11155837/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- avogadro_1.2.0-1build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Pf408H/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Pf408H/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Pf408H/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Pf408H/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Pf408H/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Pf408H/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Pf408H/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: cmake (>> 2.6.0), debhelper (>> 7.0.50~), libboost-python-dev, libeigen3-dev, libgl2ps-dev, libglew-dev, libopenbabel-dev (>> 2.2.0), libqt4-dev (>> 4.5.0), libqt4-opengl-dev, pkg-config, python (>> 2.6.6-3~), python-dev, python-numpy (>> 1:1.4.1-4~), python-sip-dev, qt4-dev-tools, zlib1g-dev Filtered Build-Depends: cmake (>> 2.6.0), debhelper (>> 7.0.50~), libboost-python-dev, libeigen3-dev, libgl2ps-dev, libglew-dev, libopenbabel-dev (>> 2.2.0), libqt4-dev (>> 4.5.0), libqt4-opengl-dev, pkg-config, python (>> 2.6.6-3~), python-dev, python-numpy (>> 1:1.4.1-4~), python-sip-dev, qt4-dev-tools, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-avogadro-dummy' in '/<>/resolver-RX6tbP/apt_archive/sbuild-build-depends-avogadro-dummy.deb'. Ign:1 copy:/<>/resolver-RX6tbP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RX6tbP/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-RX6tbP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RX6tbP/apt_archive ./ Sources [334 B] Get:5 copy:/<>/resolver-RX6tbP/apt_archive ./ Packages [653 B] Fetched 3106 B in 0s (294 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install avogadro build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libaudio2 libblas-common libblas3 libboost-python-dev libboost-python1.62-dev libboost-python1.62.0 libboost1.62-dev libbsd0 libcairo2 libcroco3 libcurl3 libdbus-1-3 libdrm-amdgpu1 libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran3 libgl1-mesa-dev libgl1-mesa-dri libgl1-mesa-glx libgl2ps-dev libgl2ps1 libglapi-mesa libglew-dev libglew2.0 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libice6 libicu57 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp1 liblapack3 liblcms2-2 libllvm3.8 liblzo2-2 libmagic1 libmng2 libmpdec2 libopenbabel-dev libopenbabel4v5 libpciaccess0 libpipeline1 libpixman-1-0 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-sql-sqlite libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 libsigsegv2 libsm6 libtiff5 libtimedate-perl libtool libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi6 libxml2 libxrender1 libxshmfence-dev libxshmfence1 libxt6 libxtst6 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf python python-dev python-minimal python-numpy python-sip python-sip-dev python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal qdbus qt4-dev-tools qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n sip-dev ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-xext-dev x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation codeblocks eclipse ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip nas libboost1.62-doc gccxml libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-serialization1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev libeigen3-doc libmrpt-dev glew-utils liblcms2-utils libopenbabel-doc pciutils libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles libqt4-declarative-shaders qt4-qmlviewer firebird-dev libmysqlclient-dev libpq-dev libsqlite0-dev libsqlite3-dev qt4-doc unixodbc-dev libicu55 libthai0 qt4-qtconfig libtool-doc gfortran | fortran95-compiler gcj-jdk libxcb-doc libxext-doc less www-browser libmail-box-perl python-doc python-tk gfortran python-nose python-numpy-dbg python-numpy-doc python-sip-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.5-venv python3.5-doc qt4-doc-html Recommended packages: curl | wget | lynx-cur dbus libtxc-dxtn-s2tc0 | libtxc-dxtn0 libglib2.0-data shared-mime-info xdg-user-dirs libcups2 qt-at-spi libltdl-dev libx11-doc xml-core libmail-sendmail-perl qt4-designer qt4-doc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libaudio2 libblas-common libblas3 libboost-python-dev libboost-python1.62-dev libboost-python1.62.0 libboost1.62-dev libbsd0 libcairo2 libcroco3 libcurl3 libdbus-1-3 libdrm-amdgpu1 libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran3 libgl1-mesa-dev libgl1-mesa-dri libgl1-mesa-glx libgl2ps-dev libgl2ps1 libglapi-mesa libglew-dev libglew2.0 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libice6 libicu57 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp1 liblapack3 liblcms2-2 libllvm3.8 liblzo2-2 libmagic1 libmng2 libmpdec2 libopenbabel-dev libopenbabel4v5 libpciaccess0 libpipeline1 libpixman-1-0 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-sql-sqlite libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 libsigsegv2 libsm6 libtiff5 libtimedate-perl libtool libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi6 libxml2 libxrender1 libxshmfence-dev libxshmfence1 libxt6 libxtst6 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf python python-dev python-minimal python-numpy python-sip python-sip-dev python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal qdbus qt4-dev-tools qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n sbuild-build-depends-avogadro-dummy sip-dev ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-xext-dev x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 205 newly installed, 0 to remove and 0 not upgraded. Need to get 162 MB of archives. After this operation, 679 MB of additional disk space will be used. Get:1 copy:/<>/resolver-RX6tbP/apt_archive ./ sbuild-build-depends-avogadro-dummy 0.invalid.0 [896 B] Get:2 http://ftpmaster.internal/ubuntu zesty/main amd64 libpython3.5-minimal amd64 3.5.2-7 [530 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main amd64 libexpat1 amd64 2.2.0-1 [70.9 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main amd64 python3.5-minimal amd64 3.5.2-7 [1637 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main amd64 python3-minimal amd64 3.5.1-4 [23.4 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main amd64 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main amd64 libmpdec2 amd64 2.4.2-1 [82.6 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main amd64 libpython3.5-stdlib amd64 3.5.2-7 [2164 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main amd64 python3.5 amd64 3.5.2-7 [173 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main amd64 libpython3-stdlib amd64 3.5.1-4 [6870 B] Get:11 http://ftpmaster.internal/ubuntu 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Get:22 http://ftpmaster.internal/ubuntu zesty/main amd64 man-db amd64 2.7.5-1 [854 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main amd64 cmake-data all 3.6.2-2ubuntu1 [1136 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main amd64 liblzo2-2 amd64 2.08-1.2 [48.7 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main amd64 libicu57 amd64 57.1-4 [7678 kB] Get:26 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libxml2 amd64 2.9.4+dfsg1-2.1 [698 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main amd64 libarchive13 amd64 3.2.1-5 [287 kB] Get:28 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libcurl3 amd64 7.50.1-1ubuntu2 [190 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main amd64 libjsoncpp1 amd64 1.7.4-3 [73.6 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main amd64 cmake amd64 3.6.2-2ubuntu1 [2883 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:32 http://ftpmaster.internal/ubuntu 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1.5.1-0ubuntu1 [113 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:44 http://ftpmaster.internal/ubuntu zesty/main amd64 liblcms2-2 amd64 2.7-1ubuntu1 [137 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main amd64 libmng2 amd64 2.0.2-0ubuntu3 [169 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main amd64 libxdamage1 amd64 1:1.1.4-2 [6946 B] Get:48 http://ftpmaster.internal/ubuntu zesty/main amd64 libxshmfence1 amd64 1.2-1 [5042 B] Get:49 http://ftpmaster.internal/ubuntu zesty/main amd64 libxtst6 amd64 2:1.2.2-1 [14.1 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/main amd64 libxxf86vm1 amd64 1:1.1.4-1 [10.6 kB] Get:51 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libpython2.7-minimal amd64 2.7.12-5 [340 kB] Get:52 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 python2.7-minimal amd64 2.7.12-5 [1324 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http://ftpmaster.internal/ubuntu zesty/main amd64 gettext-base amd64 0.19.8.1-1ubuntu2 [48.7 kB] Get:64 http://ftpmaster.internal/ubuntu zesty/main amd64 libdrm2 amd64 2.4.71-1 [28.1 kB] Get:65 http://ftpmaster.internal/ubuntu zesty/main amd64 libedit2 amd64 3.1-20150325-1ubuntu2 [76.5 kB] Get:66 http://ftpmaster.internal/ubuntu zesty/main amd64 libelf1 amd64 0.166-2ubuntu1 [42.9 kB] Get:67 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libglib2.0-0 amd64 2.50.1-1 [1143 kB] Get:68 http://ftpmaster.internal/ubuntu zesty/main amd64 libsigsegv2 amd64 2.10-5 [14.1 kB] Get:69 http://ftpmaster.internal/ubuntu zesty/main amd64 m4 amd64 1.4.17-5 [195 kB] Get:70 http://ftpmaster.internal/ubuntu zesty/main amd64 autoconf all 2.69-10 [321 kB] Get:71 http://ftpmaster.internal/ubuntu zesty/main amd64 autotools-dev all 20160430.1 [39.6 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] Get:73 http://ftpmaster.internal/ubuntu zesty/main amd64 autopoint all 0.19.8.1-1ubuntu2 [412 kB] Get:74 http://ftpmaster.internal/ubuntu zesty/main amd64 libtool all 2.4.6-2 [194 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main amd64 dh-autoreconf all 12 [15.8 kB] Get:76 http://ftpmaster.internal/ubuntu zesty/main amd64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main amd64 libfile-stripnondeterminism-perl all 0.028-1 [12.5 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:79 http://ftpmaster.internal/ubuntu zesty/main amd64 dh-strip-nondeterminism all 0.028-1 [4820 B] Get:80 http://ftpmaster.internal/ubuntu zesty/main amd64 libcroco3 amd64 0.6.11-2 [81.1 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main amd64 gettext amd64 0.19.8.1-1ubuntu2 [1083 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/main amd64 po-debconf all 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python2.7-dev amd64 2.7.12-5 [273 kB] Get:94 http://ftpmaster.internal/ubuntu zesty/main amd64 python-dev amd64 2.7.11-2 [1166 B] Get:95 http://ftpmaster.internal/ubuntu zesty/main amd64 libpython3.5 amd64 3.5.2-7 [1371 kB] Get:96 http://ftpmaster.internal/ubuntu zesty/main amd64 libpython3.5-dev amd64 3.5.2-7 [37.7 MB] Get:97 http://ftpmaster.internal/ubuntu zesty/main amd64 libpython3-dev amd64 3.5.1-4 [6962 B] Get:98 http://ftpmaster.internal/ubuntu zesty/main amd64 python3.5-dev amd64 3.5.2-7 [413 kB] Get:99 http://ftpmaster.internal/ubuntu zesty/main amd64 python3-dev amd64 3.5.1-4 [1194 B] Get:100 http://ftpmaster.internal/ubuntu zesty/main amd64 libboost-python1.62-dev amd64 1.62.0+dfsg-2 [129 kB] Get:101 http://ftpmaster.internal/ubuntu zesty-proposed/universe amd64 libboost-python-dev amd64 1.62.0.0ubuntu1 [3258 B] Get:102 http://ftpmaster.internal/ubuntu zesty/main amd64 libpixman-1-0 amd64 0.34.0-1 [230 kB] Get:103 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB] Get:104 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B] Get:105 http://ftpmaster.internal/ubuntu zesty/main amd64 libxrender1 amd64 1:0.9.9-2 [18.4 kB] Get:106 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libcairo2 amd64 1.14.6-1.1 [555 kB] Get:107 http://ftpmaster.internal/ubuntu zesty/main amd64 libdrm-amdgpu1 amd64 2.4.71-1 [16.4 kB] Get:108 http://ftpmaster.internal/ubuntu zesty/main amd64 libpciaccess0 amd64 0.13.4-1 [18.1 kB] Get:109 http://ftpmaster.internal/ubuntu zesty/main amd64 libdrm-intel1 amd64 2.4.71-1 [56.5 kB] Get:110 http://ftpmaster.internal/ubuntu zesty/main amd64 libdrm-radeon1 amd64 2.4.71-1 [21.4 kB] Get:111 http://ftpmaster.internal/ubuntu zesty/main amd64 libdrm-nouveau2 amd64 2.4.71-1 [16.2 kB] Get:112 http://ftpmaster.internal/ubuntu zesty/main amd64 libdrm-dev amd64 2.4.71-1 [217 kB] Get:113 http://ftpmaster.internal/ubuntu zesty/main amd64 libgfortran3 amd64 6.2.0-11ubuntu1 [270 kB] Get:114 http://ftpmaster.internal/ubuntu zesty/main amd64 libllvm3.8 amd64 1:3.8.1-12ubuntu1 [10.3 MB] Get:115 http://ftpmaster.internal/ubuntu zesty/main amd64 libgl1-mesa-dri amd64 12.0.3-1ubuntu2 [4362 kB] Get:116 http://ftpmaster.internal/ubuntu zesty/main amd64 libglapi-mesa amd64 12.0.3-1ubuntu2 [22.8 kB] Get:117 http://ftpmaster.internal/ubuntu zesty/main amd64 libx11-xcb1 amd64 2:1.6.3-1ubuntu3 [8872 B] Get:118 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-dri2-0 amd64 1.11.1-1ubuntu1 [6882 B] Get:119 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-dri3-0 amd64 1.11.1-1ubuntu1 [5218 B] Get:120 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-glx0 amd64 1.11.1-1ubuntu1 [20.9 kB] Get:121 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-present0 amd64 1.11.1-1ubuntu1 [5218 B] Get:122 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-sync1 amd64 1.11.1-1ubuntu1 [8324 B] Get:123 http://ftpmaster.internal/ubuntu zesty/main amd64 libxfixes3 amd64 1:5.0.2-1 [10.8 kB] Get:124 http://ftpmaster.internal/ubuntu zesty/main amd64 libgl1-mesa-glx amd64 12.0.3-1ubuntu2 [130 kB] Get:125 http://ftpmaster.internal/ubuntu zesty/universe amd64 libgl2ps1 amd64 1.3.9-4 [36.4 kB] Get:126 http://ftpmaster.internal/ubuntu zesty/universe amd64 libgl2ps-dev amd64 1.3.9-4 [12.2 kB] Get:127 http://ftpmaster.internal/ubuntu zesty/main amd64 xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:128 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-core-dev all 7.0.29-1ubuntu1 [253 kB] Get:129 http://ftpmaster.internal/ubuntu zesty/main amd64 libxau-dev amd64 1:1.0.8-1 [11.1 kB] Get:130 http://ftpmaster.internal/ubuntu zesty/main amd64 libxdmcp-dev amd64 1:1.1.2-1.1 [25.1 kB] Get:131 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-input-dev all 2.3.2-1 [118 kB] Get:132 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-kb-dev all 1.0.7-1 [226 kB] Get:133 http://ftpmaster.internal/ubuntu zesty/main amd64 xtrans-dev all 1.3.5-1 [70.5 kB] Get:134 http://ftpmaster.internal/ubuntu zesty/main amd64 libpthread-stubs0-dev amd64 0.3-4 [4068 B] Get:135 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb1-dev amd64 1.11.1-1ubuntu1 [74.2 kB] Get:136 http://ftpmaster.internal/ubuntu zesty/main amd64 libx11-dev amd64 2:1.6.3-1ubuntu3 [641 kB] Get:137 http://ftpmaster.internal/ubuntu zesty/main amd64 mesa-common-dev amd64 12.0.3-1ubuntu2 [470 kB] Get:138 http://ftpmaster.internal/ubuntu zesty/main amd64 libx11-xcb-dev amd64 2:1.6.3-1ubuntu3 [9710 B] Get:139 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-dri3-dev amd64 1.11.1-1ubuntu1 [5752 B] Get:140 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-randr0 amd64 1.11.1-1ubuntu1 [14.4 kB] Get:141 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-render0-dev amd64 1.11.1-1ubuntu1 [15.3 kB] Get:142 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-randr0-dev amd64 1.11.1-1ubuntu1 [18.2 kB] Get:143 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-xfixes0 amd64 1.11.1-1ubuntu1 [8840 B] Get:144 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-shape0 amd64 1.11.1-1ubuntu1 [5756 B] Get:145 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-shape0-dev amd64 1.11.1-1ubuntu1 [6900 B] Get:146 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-xfixes0-dev amd64 1.11.1-1ubuntu1 [11.2 kB] Get:147 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-sync-dev amd64 1.11.1-1ubuntu1 [10.1 kB] Get:148 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-present-dev amd64 1.11.1-1ubuntu1 [6618 B] Get:149 http://ftpmaster.internal/ubuntu zesty/main amd64 libxshmfence-dev amd64 1.2-1 [3676 B] Get:150 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-dri2-0-dev amd64 1.11.1-1ubuntu1 [8384 B] Get:151 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-glx0-dev amd64 1.11.1-1ubuntu1 [26.9 kB] Get:152 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-xext-dev all 7.3.0-1 [212 kB] Get:153 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-fixes-dev all 1:5.0-2ubuntu2 [14.2 kB] Get:154 http://ftpmaster.internal/ubuntu zesty/main amd64 libxfixes-dev amd64 1:5.0.2-1 [11.0 kB] Get:155 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-damage-dev all 1:1.2.1-2 [8286 B] Get:156 http://ftpmaster.internal/ubuntu zesty/main amd64 libxdamage-dev amd64 1:1.1.4-2 [5028 B] Get:157 http://ftpmaster.internal/ubuntu zesty/main amd64 libxext-dev amd64 2:1.3.3-1 [82.1 kB] Get:158 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-xf86vidmode-dev all 2.3.1-2 [6116 B] Get:159 http://ftpmaster.internal/ubuntu zesty/main amd64 libxxf86vm-dev amd64 1:1.1.4-1 [13.3 kB] Get:160 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-dri2-dev all 2.8-2 [12.6 kB] Get:161 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-gl-dev all 1.4.17-1 [17.9 kB] Get:162 http://ftpmaster.internal/ubuntu zesty/main amd64 libgl1-mesa-dev amd64 12.0.3-1ubuntu2 [4408 B] Get:163 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libglew2.0 amd64 2.0.0-3 [136 kB] Get:164 http://ftpmaster.internal/ubuntu zesty/main amd64 libglu1-mesa amd64 9.0.0-2.1build1 [168 kB] Get:165 http://ftpmaster.internal/ubuntu zesty/main amd64 libglu1-mesa-dev amd64 9.0.0-2.1build1 [206 kB] Get:166 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libglew-dev amd64 2.0.0-3 [120 kB] Get:167 http://ftpmaster.internal/ubuntu zesty/main amd64 liblapack3 amd64 3.6.1-2ubuntu1 [1950 kB] Get:168 http://ftpmaster.internal/ubuntu zesty/universe amd64 libopenbabel4v5 amd64 2.3.2+dfsg-2.4build1 [2664 kB] Get:169 http://ftpmaster.internal/ubuntu zesty/universe amd64 libopenbabel-dev amd64 2.3.2+dfsg-2.4build1 [157 kB] Get:170 http://ftpmaster.internal/ubuntu zesty/main amd64 qtcore4-l10n all 4:4.8.7+dfsg-7ubuntu1 [617 kB] Get:171 http://ftpmaster.internal/ubuntu zesty/main amd64 libqtcore4 amd64 4:4.8.7+dfsg-7ubuntu1 [1552 kB] Get:172 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-xml amd64 4:4.8.7+dfsg-7ubuntu1 [96.1 kB] Get:173 http://ftpmaster.internal/ubuntu zesty/main amd64 libqtdbus4 amd64 4:4.8.7+dfsg-7ubuntu1 [186 kB] Get:174 http://ftpmaster.internal/ubuntu zesty/main amd64 qtchooser amd64 58-gfab25f1-1 [22.6 kB] Get:175 http://ftpmaster.internal/ubuntu zesty/main amd64 qdbus amd64 4:4.8.7+dfsg-7ubuntu1 [30.0 kB] Get:176 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-dbus amd64 4:4.8.7+dfsg-7ubuntu1 [6440 B] Get:177 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-network amd64 4:4.8.7+dfsg-7ubuntu1 [562 kB] Get:178 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-script amd64 4:4.8.7+dfsg-7ubuntu1 [815 kB] Get:179 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-sql amd64 4:4.8.7+dfsg-7ubuntu1 [98.5 kB] Get:180 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-xmlpatterns amd64 4:4.8.7+dfsg-7ubuntu1 [1091 kB] Get:181 http://ftpmaster.internal/ubuntu zesty/main amd64 libtiff5 amd64 4.0.6-3 [145 kB] Get:182 http://ftpmaster.internal/ubuntu zesty/main amd64 libxi6 amd64 2:1.7.6-1 [28.6 kB] Get:183 http://ftpmaster.internal/ubuntu zesty/main amd64 libqtgui4 amd64 4:4.8.7+dfsg-7ubuntu1 [4115 kB] Get:184 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-declarative amd64 4:4.8.7+dfsg-7ubuntu1 [1089 kB] Get:185 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-designer amd64 4:4.8.7+dfsg-7ubuntu1 [3629 kB] Get:186 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-qt3support amd64 4:4.8.7+dfsg-7ubuntu1 [1049 kB] Get:187 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-dev-bin amd64 4:4.8.7+dfsg-7ubuntu1 [1706 kB] Get:188 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-help amd64 4:4.8.7+dfsg-7ubuntu1 [207 kB] Get:189 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-scripttools amd64 4:4.8.7+dfsg-7ubuntu1 [225 kB] Get:190 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-svg amd64 4:4.8.7+dfsg-7ubuntu1 [138 kB] Get:191 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-test amd64 4:4.8.7+dfsg-7ubuntu1 [61.2 kB] Get:192 http://ftpmaster.internal/ubuntu zesty/main amd64 qt4-linguist-tools amd64 4:4.8.7+dfsg-7ubuntu1 [879 kB] Get:193 http://ftpmaster.internal/ubuntu zesty/main amd64 qt4-qmake amd64 4:4.8.7+dfsg-7ubuntu1 [1366 kB] Get:194 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-dev amd64 4:4.8.7+dfsg-7ubuntu1 [853 kB] Get:195 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-opengl amd64 4:4.8.7+dfsg-7ubuntu1 [301 kB] Get:196 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-opengl-dev amd64 4:4.8.7+dfsg-7ubuntu1 [22.8 kB] Get:197 http://ftpmaster.internal/ubuntu zesty/main amd64 libqt4-sql-sqlite amd64 4:4.8.7+dfsg-7ubuntu1 [23.6 kB] Get:198 http://ftpmaster.internal/ubuntu zesty/main amd64 pkg-config amd64 0.29.1-0ubuntu1 [45.0 kB] Get:199 http://ftpmaster.internal/ubuntu zesty/main amd64 python-numpy amd64 1:1.11.1~rc1-1ubuntu1 [1783 kB] Get:200 http://ftpmaster.internal/ubuntu zesty/universe amd64 python-sip amd64 4.18.1+dfsg-1 [71.8 kB] Get:201 http://ftpmaster.internal/ubuntu zesty/universe amd64 sip-dev amd64 4.18.1+dfsg-1 [151 kB] Get:202 http://ftpmaster.internal/ubuntu zesty/universe amd64 python-sip-dev amd64 4.18.1+dfsg-1 [19.9 kB] Get:203 http://ftpmaster.internal/ubuntu zesty/main amd64 qt4-dev-tools amd64 4:4.8.7+dfsg-7ubuntu1 [4015 kB] Get:204 http://ftpmaster.internal/ubuntu zesty/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu5 [168 kB] Get:205 http://ftpmaster.internal/ubuntu zesty/universe amd64 libeigen3-dev all 3.3~beta2-2ubuntu2 [771 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 162 MB in 35s (4624 kB/s) Selecting previously unselected package libpython3.5-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14101 files and directories currently installed.) Preparing to unpack .../0-libpython3.5-minimal_3.5.2-7_amd64.deb ... Unpacking libpython3.5-minimal:amd64 (3.5.2-7) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../1-libexpat1_2.2.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-1) ... Selecting previously unselected package python3.5-minimal. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15052 files and directories currently installed.) Preparing to unpack .../00-python3_3.5.1-4_amd64.deb ... Unpacking python3 (3.5.1-4) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../01-libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../02-libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... 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Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+16ubuntu2) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libqt4-test:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up sip-dev (4.18.1+dfsg-1) ... Setting up libx11-data (2:1.6.3-1ubuntu3) ... Setting up libpython2.7-stdlib:amd64 (2.7.12-5) ... Setting up libqt4-xml:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up qt4-linguist-tools (4:4.8.7+dfsg-7ubuntu1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libdbus-1-3:amd64 (1.10.10-1ubuntu2) ... Setting up liblzo2-2:amd64 (2.08-1.2) ... 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Setting up x11proto-input-dev (2.3.2-1) ... Setting up python (2.7.11-2) ... Setting up python-sip (4.18.1+dfsg-1) ... Setting up libtool (2.4.6-2) ... Setting up python3.5 (3.5.2-7) ... Setting up libpython3-stdlib:amd64 (3.5.1-4) ... Setting up libxcb-present0:amd64 (1.11.1-1ubuntu1) ... Setting up libpython-dev:amd64 (2.7.11-2) ... Setting up libfontconfig1:amd64 (2.11.94-0ubuntu2) ... Setting up libxcb-dri2-0:amd64 (1.11.1-1ubuntu1) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libxcb-dri3-0:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-glx0:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-randr0:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-xfixes0:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up libqt4-script:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libpython3.5:amd64 (3.5.2-7) ... Setting up python-dev (2.7.11-2) ... Setting up libdrm-dev:amd64 (2.4.71-1) ... Setting up libx11-6:amd64 (2:1.6.3-1ubuntu3) ... Setting up libgl1-mesa-dri:amd64 (12.0.3-1ubuntu2) ... Setting up libqt4-sql-sqlite:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libpython3.5-dev:amd64 (3.5.2-7) ... Setting up python-numpy (1:1.11.1~rc1-1ubuntu1) ... Setting up qdbus (4:4.8.7+dfsg-7ubuntu1) ... Setting up libxcb-sync1:amd64 (1.11.1-1ubuntu1) ... Setting up python-sip-dev (4.18.1+dfsg-1) ... Setting up x11proto-xext-dev (7.3.0-1) ... Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxcb-shape0:amd64 (1.11.1-1ubuntu1) ... Setting up libxrender1:amd64 (1:0.9.9-2) ... Setting up libxcb1-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-glx0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libx11-dev:amd64 (2:1.6.3-1ubuntu3) ... Setting up libqt4-dbus:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up python3.5-dev (3.5.2-7) ... Setting up libqt4-network:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libxcb-sync-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libaudio2:amd64 (1.9.4-5) ... Setting up fontconfig (2.11.94-0ubuntu2) ... Regenerating fonts cache... done. Setting up libpython3-dev:amd64 (3.5.1-4) ... Setting up libx11-xcb-dev:amd64 (2:1.6.3-1ubuntu3) ... Setting up libxdamage1:amd64 (1:1.1.4-2) ... Setting up mesa-common-dev:amd64 (12.0.3-1ubuntu2) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxfixes3:amd64 (1:5.0.2-1) ... Setting up x11proto-fixes-dev (1:5.0-2ubuntu2) ... Setting up libqt4-xmlpatterns:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libxtst6:amd64 (2:1.2.2-1) ... Setting up libxcb-dri2-0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-render0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up x11proto-damage-dev (1:1.2.1-2) ... Setting up libxcb-dri3-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxext-dev:amd64 (2:1.3.3-1) ... Setting up libxcb-shape0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1) ... Setting up libxxf86vm-dev:amd64 (1:1.1.4-1) ... Setting up libxfixes-dev:amd64 (1:5.0.2-1) ... Setting up libxi6:amd64 (2:1.7.6-1) ... Setting up libcairo2:amd64 (1.14.6-1.1) ... Setting up libxcb-randr0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-xfixes0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxdamage-dev:amd64 (1:1.1.4-2) ... Setting up libgl1-mesa-glx:amd64 (12.0.3-1ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/x86_64-linux-gnu_GL.conf (x86_64-linux-gnu_gl_conf) in auto mode Setting up libgl2ps1 (1.3.9-4) ... Setting up libglew2.0:amd64 (2.0.0-3) ... Setting up libgl2ps-dev (1.3.9-4) ... Setting up libopenbabel4v5 (2.3.2+dfsg-2.4build1) ... Setting up libglu1-mesa:amd64 (9.0.0-2.1build1) ... Setting up libxcb-present-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libopenbabel-dev (2.3.2+dfsg-2.4build1) ... Setting up libgl1-mesa-dev:amd64 (12.0.3-1ubuntu2) ... Setting up libglu1-mesa-dev:amd64 (9.0.0-2.1build1) ... Setting up libglew-dev:amd64 (2.0.0-3) ... Setting up libqtgui4:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up dh-autoreconf (12) ... Setting up python3 (3.5.1-4) ... Setting up libqt4-designer:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-help:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up python3-dev (3.5.1-4) ... Setting up dh-strip-nondeterminism (0.028-1) ... Setting up dh-python (2.20160818) ... Setting up libqt4-svg:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-scripttools:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up libqt4-opengl:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-declarative:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-qt3support:amd64 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libboost-python1.62-dev (1.62.0+dfsg-2) ... Setting up libqt4-dev-bin (4:4.8.7+dfsg-7ubuntu1) ... Setting up qt4-dev-tools (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-dev (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-opengl-dev (4:4.8.7+dfsg-7ubuntu1) ... Setting up libboost-python-dev (1.62.0.0ubuntu1) ... Setting up sbuild-build-depends-avogadro-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... 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libxcb-randr0-dev_1.11.1-1ubuntu1 libxcb-render0_1.11.1-1ubuntu1 libxcb-render0-dev_1.11.1-1ubuntu1 libxcb-shape0_1.11.1-1ubuntu1 libxcb-shape0-dev_1.11.1-1ubuntu1 libxcb-shm0_1.11.1-1ubuntu1 libxcb-sync-dev_1.11.1-1ubuntu1 libxcb-sync1_1.11.1-1ubuntu1 libxcb-xfixes0_1.11.1-1ubuntu1 libxcb-xfixes0-dev_1.11.1-1ubuntu1 libxcb1_1.11.1-1ubuntu1 libxcb1-dev_1.11.1-1ubuntu1 libxdamage-dev_1:1.1.4-2 libxdamage1_1:1.1.4-2 libxdmcp-dev_1:1.1.2-1.1 libxdmcp6_1:1.1.2-1.1 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxfixes-dev_1:5.0.2-1 libxfixes3_1:5.0.2-1 libxi6_2:1.7.6-1 libxml2_2.9.4+dfsg1-2.1 libxrender1_1:0.9.9-2 libxshmfence-dev_1.2-1 libxshmfence1_1.2-1 libxt6_1:1.1.5-1 libxtst6_2:1.2.2-1 libxxf86vm-dev_1:1.1.4-1 libxxf86vm1_1:1.1.4-1 linux-libc-dev_4.8.0-27.29 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mesa-common-dev_12.0.3-1ubuntu2 mime-support_3.60ubuntu1 mount_2.28.2-1ubuntu1 multiarch-support_2.24-3ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu9 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.24.1~rc3-3 perl-base_5.24.1~rc3-3 perl-modules-5.22_5.22.2-3 perl-modules-5.24_5.24.1~rc3-3 pinentry-curses_0.9.7-8 pkg-config_0.29.1-0ubuntu1 pkg-create-dbgsym_0.72 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.11-2 python-dev_2.7.11-2 python-minimal_2.7.11-2 python-numpy_1:1.11.1~rc1-1ubuntu1 python-sip_4.18.1+dfsg-1 python-sip-dev_4.18.1+dfsg-1 python2.7_2.7.12-5 python2.7-dev_2.7.12-5 python2.7-minimal_2.7.12-5 python3_3.5.1-4 python3-dev_3.5.1-4 python3-minimal_3.5.1-4 python3.5_3.5.2-7 python3.5-dev_3.5.2-7 python3.5-minimal_3.5.2-7 qdbus_4:4.8.7+dfsg-7ubuntu1 qt4-dev-tools_4:4.8.7+dfsg-7ubuntu1 qt4-linguist-tools_4:4.8.7+dfsg-7ubuntu1 qt4-qmake_4:4.8.7+dfsg-7ubuntu1 qtchooser_58-gfab25f1-1 qtcore4-l10n_4:4.8.7+dfsg-7ubuntu1 readline-common_7.0-0ubuntu2 sbuild-build-depends-avogadro-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 sip-dev_4.18.1+dfsg-1 systemd_232-2 systemd-sysv_232-2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 tzdata_2016i-1 ubuntu-keyring_2016.10.27 ucf_3.0036 util-linux_2.28.2-1ubuntu1 x11-common_1:7.7+16ubuntu2 x11proto-core-dev_7.0.29-1ubuntu1 x11proto-damage-dev_1:1.2.1-2 x11proto-dri2-dev_2.8-2 x11proto-fixes-dev_1:5.0-2ubuntu2 x11proto-gl-dev_1.4.17-1 x11proto-input-dev_2.3.2-1 x11proto-kb-dev_1.0.7-1 x11proto-xext-dev_7.3.0-1 x11proto-xf86vidmode-dev_2.3.1-2 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Nov 7 02:18:56 2016 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./avogadro_1.2.0-1build1.dsc dpkg-source: info: extracting avogadro in avogadro-1.2.0 dpkg-source: info: unpacking avogadro_1.2.0.orig.tar.gz dpkg-source: info: unpacking avogadro_1.2.0-1build1.debian.tar.xz dpkg-source: info: applying probe-X11-paths-with-find_package.patch dpkg-source: info: applying boost148.patch dpkg-source: info: applying eigen3.patch dpkg-source: info: applying gcc-version.diff dpkg-source: info: applying libmsymfloat.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package avogadro dpkg-buildpackage: info: source version 1.2.0-1build1 dpkg-buildpackage: info: source distribution zesty dpkg-source --before-build avogadro-1.2.0 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 --parallel dh: Compatibility levels before 9 are deprecated (level 7 in use) dh_testdir -O--parallel dh_auto_clean -O--parallel dh_auto_clean: Compatibility levels before 9 are deprecated (level 7 in use) debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean conf.log conf.pri dh_clean: Compatibility levels before 9 are deprecated (level 7 in use) make[1]: Leaving directory '/<>' debian/rules build dh build --with python2 --parallel dh: Compatibility levels before 9 are deprecated (level 7 in use) dh_testdir -O--parallel dh_update_autotools_config -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ -DENABLE_GLSL=ON \ -DENABLE_RPATH=OFF \ -DENABLE_UPDATE_CHECKER=OFF \ -DPYTHON_EXECUTABLE=/usr/bin/python2.7 \ -DPYTHON_LIBRARY=/usr/lib/x86_64-linux-gnu/libpython2.7.so \ -DPYTHON_INCLUDE_DIR=/usr/include/python2.7/ dh_auto_configure: Compatibility levels before 9 are deprecated (level 7 in use) cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DENABLE_GLSL=ON -DENABLE_RPATH=OFF -DENABLE_UPDATE_CHECKER=OFF -DPYTHON_EXECUTABLE=/usr/bin/python2.7 -DPYTHON_LIBRARY=/usr/lib/x86_64-linux-gnu/libpython2.7.so -DPYTHON_INCLUDE_DIR=/usr/include/python2.7/ -- The C compiler identification is GNU 6.2.0 -- The CXX compiler identification is GNU 6.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The build type is None -- Performing Test HAVE_NO_RTTI -- Performing Test HAVE_NO_RTTI - Success -- Performing Test HAVE_RTTI -- Performing Test HAVE_RTTI - Success -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Performing Test COMPILES_WITHOUT_FPERMISSIVE -- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake (found suitable version "4.8.7", minimum required is "4.6.0") -- Found OpenGL: /usr/lib/x86_64-linux-gnu/libGL.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Found X11: /usr/lib/x86_64-linux-gnu/libX11.so -- Found lupdate: /usr/bin/lupdate-qt4 -- Found lrelease: /usr/bin/lrelease-qt4 -- Found lconvert: /usr/bin/lconvert -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Checking for module 'openbabel-2.0>=2.3.0' -- Found openbabel-2.0, version 2.3.2 -- Found OpenBabel 2.3 or later: openbabel -- Found Git revision is: -- Building released version. -- Searching for python dependencies... -- [1/5] Boost Python CMake Warning at /usr/share/cmake-3.6/Modules/FindBoost.cmake:743 (message): Imported targets not available for Boost version 106200 Call Stack (most recent call first): /usr/share/cmake-3.6/Modules/FindBoost.cmake:842 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.6/Modules/FindBoost.cmake:1411 (_Boost_MISSING_DEPENDENCIES) cmake/modules/PythonDeps.cmake:17 (find_package) CMakeLists.txt:269 (include) -- Boost version: 1.62.0 -- Found the following Boost libraries: -- python -- Boost Python found... -- [2/5] Python Libraries -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so -- [3/5] Python Interpreter -- Found PythonInterp: /usr/bin/python2.7 (found version "2.7.12") -- [4/5] Numpy Module -- Numpy headers found -- [5/5] SIP Module -- SIP version 266753 found -- Found SIP: /usr/include/python2.7 -- All python dependencies found - Python support enabled -- GLEW found and GLSL support enabled -- Threaded OpenGL rendering not enabled -- Setting new boost python libraries failed to create symbolic link '/<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro//<>/obj-x86_64-linux-gnu/libavogadro/src/config.h': No such file or directory -- Enabled python terminal -- Found Qt4: /usr/bin/qmake (found suitable version "4.8.7", minimum required is "4.6") -- Linking in static plugins: bsdyengine;navigatetool;elementcolor -- Python site-packages directory: /usr/lib/python2.7/dist-packages -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- docbook tools not found, doc targets disabled -- Configuring done CMake Warning (dev) in libavogadro/src/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "avogadro" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: openbabel;/usr/lib/x86_64-linux-gnu/libQtOpenGL.so;/usr/lib/x86_64-linux-gnu/libQtGui.so;/usr/lib/x86_64-linux-gnu/libQtCore.so;/usr/lib/x86_64-linux-gnu/libGLU.so;/usr/lib/x86_64-linux-gnu/libGL.so;/usr/lib/x86_64-linux-gnu/libGLEW.so;/usr/lib/x86_64-linux-gnu/libpython2.7.so;/usr/lib/x86_64-linux-gnu/libboost_python.so;bsdyengine;navigatetool;elementcolor LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in libavogadro/src/extensions/surfaces/openqube/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "OpenQube" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: $<$>:/usr/lib/x86_64-linux-gnu/libQtCore.so>;$<$:/usr/lib/x86_64-linux-gnu/libQtCore.so>;$<$>:/usr/lib/x86_64-linux-gnu/libQtGui.so>;$<$:/usr/lib/x86_64-linux-gnu/libQtGui.so> LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build -O--parallel dh_auto_build: Compatibility levels before 9 are deprecated (level 7 in use) make -j4 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/symmetry/libmsym /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= [ 0%] Generating qrc_navigatetool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name navigatetool -o /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx /<>/libavogadro/src/tools/navigatetool.qrc [ 1%] Generating moc_elementcolor.cxx [ 1%] Generating ui_bsdysettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx_parameters cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_bsdysettingswidget.h /<>/libavogadro/src/engines/bsdysettingswidget.ui Scanning dependencies of target msym make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Generating moc_bsdyengine.cxx cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/colors /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/character_table.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx_parameters cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/character_table.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c In file included from /usr/include/stdlib.h:24:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c:11: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 1%] Generating moc_navigatetool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx_parameters Scanning dependencies of target elementcolor make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /<>/libavogadro/src/colors/elementcolor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/elementcolor.h:29, from /<>/libavogadro/src/colors/elementcolor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/context.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/context.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/context.c [ 1%] Generating ui_navigatesettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/ui_navigatesettingswidget.h /<>/libavogadro/src/tools/navigatesettingswidget.ui cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= In file included from /usr/include/stdlib.h:24:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/context.c:11: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target bsdyengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /<>/libavogadro/src/engines/bsdyengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/bsdyengine.h:28, from /<>/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target navigatetool make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /<>/libavogadro/src/tools/navigatetool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/tools/navigatetool.h:29, from /<>/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/elements.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/elements.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/elements.c In file included from /usr/include/string.h:25:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/elements.c:11: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/equivalence_set.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/equivalence_set.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c In file included from /usr/include/stdlib.h:24:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:11: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/geometry.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/geometry.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c In file included from /usr/include/math.h:26:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c:11: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/linalg.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/linalg.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c In file included from /usr/include/stdio.h:27:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c:12: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/msym.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/msym.c In file included from /usr/include/stdio.h:27:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/msym.c:11: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym_error.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/msym_error.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c In file included from /usr/include/stdio.h:27:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c:12: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/orbital.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/orbital.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c In file included from /usr/include/stdlib.h:24:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:11: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/permutation.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/permutation.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c In file included from /usr/include/stdlib.h:24:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c:11: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/point_group.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/point_group.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c In file included from /usr/include/math.h:26:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:12: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetrize.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symmetrize.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c In file included from /usr/include/stdlib.h:24:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:11: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/elementcolor.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetry.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symmetry.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c In file included from /usr/include/stdio.h:27:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/symop.h:16, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.h:15, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:11: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symop.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symop.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/symop.c In file included from /usr/include/math.h:26:0, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/symop.c:11: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Linking CXX static library elementcolor.a cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 /usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o /usr/bin/ranlib elementcolor.a [ 3%] Linking C static library libmsym.a cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -P CMakeFiles/msym.dir/cmake_clean_target.cmake make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 3%] Built target elementcolor make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/depend cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -E cmake_link_script CMakeFiles/msym.dir/link.txt --verbose=1 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/crystallography/spglib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/DependInfo.cmake --color= /usr/bin/ar qc libmsym.a CMakeFiles/msym.dir/src/character_table.c.o CMakeFiles/msym.dir/src/context.c.o CMakeFiles/msym.dir/src/elements.c.o CMakeFiles/msym.dir/src/equivalence_set.c.o CMakeFiles/msym.dir/src/geometry.c.o CMakeFiles/msym.dir/src/linalg.c.o CMakeFiles/msym.dir/src/msym.c.o CMakeFiles/msym.dir/src/msym_error.c.o CMakeFiles/msym.dir/src/orbital.c.o CMakeFiles/msym.dir/src/permutation.c.o CMakeFiles/msym.dir/src/point_group.c.o CMakeFiles/msym.dir/src/symmetrize.c.o CMakeFiles/msym.dir/src/symmetry.c.o CMakeFiles/msym.dir/src/symop.c.o /usr/bin/ranlib libmsym.a Scanning dependencies of target spglib make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 3%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/cell.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/cell.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/cell.c [ 3%] Built target msym make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 3%] Generating moc_slaterset.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx_parameters [ 3%] Generating moc_basisset.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx_parameters [ 3%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/debug.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/debug.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/debug.c [ 3%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/hall_symbol.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/hall_symbol.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/hall_symbol.c [ 3%] Generating moc_gaussianset.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces/openqube /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= Scanning dependencies of target OpenQube make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build [ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /<>/libavogadro/src/tools/eyecandy.cpp make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/new:39, from /usr/include/eigen3/Eigen/Core:59, from /<>/libavogadro/src/tools/eyecandy.h:30, from /<>/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/atom.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/atom.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/atom.cpp [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/lattice.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/lattice.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/lattice.c In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/bits/stl_algobase.h:59, from /usr/include/c++/6/vector:60, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.cpp:17: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/mathfunc.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/mathfunc.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/mathfunc.c [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/pointgroup.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/pointgroup.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/pointgroup.c [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/primitive.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/primitive.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/primitive.c [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/refinement.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/refinement.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/refinement.c [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spacegroup.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/spacegroup.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/spacegroup.c [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spg_database.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/spg_database.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/spg_database.c [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spglib.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/spglib.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/spglib.c [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basisset.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basisset.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/basisset.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/new:39, from /usr/include/eigen3/Eigen/Core:59, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/basisset.cpp:17: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/symmetry.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/symmetry.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/symmetry.c [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/kpoint.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/kpoint.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/kpoint.c [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/site_symmetry.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/site_symmetry.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/site_symmetry.c [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/sitesym_database.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/sitesym_database.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/sitesym_database.c [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spglib_f.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/spglib_f.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/spglib_f.c [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spin.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/spin.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/spin.c [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/tetrahedron_method.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/spglib.dir/tetrahedron_method.c.o -c /<>/libavogadro/src/extensions/crystallography/spglib/tetrahedron_method.c [ 6%] Linking C static library libspglib.a cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cmake -P CMakeFiles/spglib.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cmake -E cmake_link_script CMakeFiles/spglib.dir/link.txt --verbose=1 /usr/bin/ar qc libspglib.a CMakeFiles/spglib.dir/cell.c.o CMakeFiles/spglib.dir/debug.c.o CMakeFiles/spglib.dir/hall_symbol.c.o CMakeFiles/spglib.dir/lattice.c.o CMakeFiles/spglib.dir/mathfunc.c.o CMakeFiles/spglib.dir/pointgroup.c.o CMakeFiles/spglib.dir/primitive.c.o CMakeFiles/spglib.dir/refinement.c.o CMakeFiles/spglib.dir/spacegroup.c.o CMakeFiles/spglib.dir/spg_database.c.o CMakeFiles/spglib.dir/spglib.c.o CMakeFiles/spglib.dir/symmetry.c.o CMakeFiles/spglib.dir/kpoint.c.o CMakeFiles/spglib.dir/site_symmetry.c.o CMakeFiles/spglib.dir/sitesym_database.c.o CMakeFiles/spglib.dir/spglib_f.c.o CMakeFiles/spglib.dir/spin.c.o CMakeFiles/spglib.dir/tetrahedron_method.c.o /usr/bin/ranlib libspglib.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 6%] Built target spglib [ 6%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 6%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basissetloader.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basissetloader.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/new:39, from /usr/include/eigen3/Eigen/Core:59, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 6%] Linking CXX static library bsdyengine.a cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 /usr/bin/ar qc bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o /usr/bin/ranlib bsdyengine.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 6%] Built target bsdyengine [ 6%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/swcntbuilder/tubegen /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= Scanning dependencies of target tubegen make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 6%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Bitmap.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/tubegen.dir/Bitmap.c.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/Bitmap.c [ 6%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Core3DMath.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/tubegen.dir/Core3DMath.c.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.c [ 6%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/eprintf.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -w -o CMakeFiles/tubegen.dir/eprintf.c.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.c [ 6%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/ANSR.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.cpp [ 6%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/Cell.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/Cell.cpp [ 6%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/cube.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/cube.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/cube.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/bits/stl_algobase.h:59, from /usr/include/c++/6/vector:60, from /<>/libavogadro/src/extensions/surfaces/openqube/cube.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/cube.cpp:17: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 7%] Linking CXX static library navigatetool.a cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -P CMakeFiles/navigatetool.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 /usr/bin/ar qc navigatetool.a CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o /usr/bin/ranlib navigatetool.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 7%] Built target navigatetool [ 8%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/CrystalCell.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/CrystalCell.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp [ 8%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/diamond.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp [ 8%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessukout.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/new:39, from /usr/include/eigen3/Eigen/Core:59, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/gamessukout.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp:17: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 8%] Generating qrc_pythontool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name pythontool -o /<>/obj-x86_64-linux-gnu/libavogadro/src/qrc_pythontool.cxx /<>/libavogadro/src/pythontool.qrc [ 8%] Generating moc_animation.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_animation.cxx_parameters [ 8%] Generating moc_atom.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_atom.cxx_parameters [ 9%] Generating moc_bond.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_bond.cxx_parameters [ 9%] Generating moc_color.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_color.cxx_parameters [ 9%] Generating moc_colorbutton.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_colorbutton.cxx_parameters [ 9%] Generating moc_cube.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_cube.cxx_parameters [ 9%] Generating moc_dockextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_dockextension.cxx_parameters [ 9%] Generating moc_dockwidget.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_dockwidget.cxx_parameters [ 9%] Generating moc_elementdetail_p.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx_parameters [ 9%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp [ 9%] Generating moc_elementtranslator.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_elementtranslator.cxx_parameters [ 9%] Generating moc_engine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_engine.cxx_parameters [ 9%] Generating moc_extension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_extension.cxx_parameters [ 10%] Generating moc_fragment.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_fragment.cxx_parameters [ 10%] Generating moc_glwidget.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_glwidget.cxx_parameters [ 10%] Generating moc_mesh.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_mesh.cxx_parameters [ 10%] Generating moc_meshgenerator.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_meshgenerator.cxx_parameters [ 10%] Generating moc_molecule.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_molecule.cxx_parameters [ 10%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp [ 10%] Generating moc_moleculefile.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_moleculefile.cxx_parameters [ 10%] Generating moc_periodictablescene_p.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx_parameters [ 10%] Generating moc_periodictableview.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictableview.cxx_parameters [ 10%] Generating moc_plotwidget.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_plotwidget.cxx_parameters [ 11%] Generating moc_plugin.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_plugin.cxx_parameters [ 11%] Generating moc_pluginmanager.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pluginmanager.cxx_parameters [ 11%] Generating moc_primitive.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_primitive.cxx_parameters [ 11%] Generating moc_protein.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_protein.cxx_parameters [ 11%] Generating moc_readfilethread_p.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx_parameters [ 11%] Generating moc_residue.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_residue.cxx_parameters [ 11%] Generating moc_textmatrixeditor.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx_parameters [ 11%] Generating moc_tool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_tool.cxx_parameters [ 11%] Generating moc_toolgroup.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_toolgroup.cxx_parameters [ 11%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubeGen.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp [ 11%] Generating moc_zmatrix.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_zmatrix.cxx_parameters [ 12%] Generating moc_pythonengine_p.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx_parameters [ 12%] Generating moc_pythonerror.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonerror.cxx_parameters [ 12%] Generating moc_pythonextension_p.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx_parameters [ 12%] Generating moc_pythontool_p.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pythontool_p.cxx_parameters [ 12%] Generating libavogadro_ar.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ar.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.ts Scanning directory '/<>/libavogadro/src'... [ 12%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.qm [ 12%] Generating libavogadro_bg.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/bg.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bg.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bg.ts Scanning directory '/<>/libavogadro/src'... [ 12%] Generating libavogadro_bs.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/bs.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bg.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bg.qm [ 12%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessus.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessus.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /<>/libavogadro/src/extensions/surfaces/openqube/gamessus.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp:17: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.qm [ 12%] Generating libavogadro_ca.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ca.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.qm [ 12%] Generating libavogadro_ca@valencia.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ca@valencia.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts Scanning directory '/<>/libavogadro/src'... [ 13%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/orca.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/orca.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/orca.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qstringlist.h:45, from /usr/include/qt4/QtCore/QStringList:1, from /<>/libavogadro/src/extensions/surfaces/openqube/orca.h:20, from /<>/libavogadro/src/extensions/surfaces/openqube/orca.cpp:17: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.qm [ 14%] Generating libavogadro_cs.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/cs.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_cs.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_cs.ts Scanning directory '/<>/libavogadro/src'... [ 14%] Linking CXX static library libtubegen.a cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 /usr/bin/ar qc libtubegen.a CMakeFiles/tubegen.dir/Bitmap.c.o CMakeFiles/tubegen.dir/Core3DMath.c.o CMakeFiles/tubegen.dir/eprintf.c.o CMakeFiles/tubegen.dir/ANSR.cpp.o CMakeFiles/tubegen.dir/Cell.cpp.o CMakeFiles/tubegen.dir/CrystalCell.cpp.o CMakeFiles/tubegen.dir/diamond.cpp.o CMakeFiles/tubegen.dir/fcc.cpp.o CMakeFiles/tubegen.dir/graphite.cpp.o CMakeFiles/tubegen.dir/TubeGen.cpp.o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o /usr/bin/ranlib libtubegen.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target tubegen [ 14%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /<>/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp:17: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_cs.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_cs.qm [ 14%] Generating libavogadro_da.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/da.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.qm [ 14%] Generating libavogadro_de.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/de.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.qm [ 14%] Generating libavogadro_el.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/el.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.ts [ 14%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianset.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gaussianset.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/new:39, from /usr/include/eigen3/Eigen/Core:59, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.qm [ 14%] Generating libavogadro_en_AU.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/en_AU.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.qm [ 14%] Generating libavogadro_en_CA.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/en_CA.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.ts Scanning directory '/<>/libavogadro/src'... [ 14%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molden.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/molden.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/molden.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/new:39, from /usr/include/eigen3/Eigen/Core:59, from /<>/libavogadro/src/extensions/surfaces/openqube/molden.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/molden.cpp:17: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.qm [ 14%] Generating libavogadro_en_GB.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/en_GB.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.qm [ 14%] Generating libavogadro_es.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/es.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_es.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_es.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_es.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_es.qm [ 14%] Generating libavogadro_et.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/et.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.qm [ 15%] Generating libavogadro_eu.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/eu.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.ts Scanning directory '/<>/libavogadro/src'... [ 15%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molecule.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/molecule.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/molecule.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/new:39, from /usr/include/eigen3/Eigen/Core:59, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.cpp:17: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.qm [ 15%] Generating libavogadro_fi.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/fi.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fi.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fi.ts Scanning directory '/<>/libavogadro/src'... [ 15%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/mopacaux.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/mopacaux.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qtextstream.h:45, from /usr/include/qt4/QtCore/QTextStream:1, from /<>/libavogadro/src/extensions/surfaces/openqube/mopacaux.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp:17: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fi.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fi.qm [ 15%] Generating libavogadro_fr.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/fr.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.ts Scanning directory '/<>/libavogadro/src'... [ 15%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/slaterset.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/slaterset.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/new:39, from /usr/include/eigen3/Eigen/Core:59, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.qm [ 15%] Generating libavogadro_gl.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/gl.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.ts Scanning directory '/<>/libavogadro/src'... [ 15%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_basisset.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/new:39, from /usr/include/eigen3/Eigen/Core:59, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.qm [ 15%] Generating libavogadro_he.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/he.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_he.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_he.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_he.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_he.qm [ 15%] Generating libavogadro_hi.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/hi.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.ts Scanning directory '/<>/libavogadro/src'... [ 15%] Generating libavogadro_hu.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/hu.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.qm [ 15%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/new:39, from /usr/include/eigen3/Eigen/Core:59, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/new:39, from /usr/include/eigen3/Eigen/Core:59, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.qm [ 16%] Generating libavogadro_id.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/id.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.qm [ 16%] Generating libavogadro_it.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/it.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.qm [ 16%] Generating libavogadro_ja.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ja.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.ts [ 17%] Generating libavogadro_kn.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/kn.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.ts [ 17%] Generating libavogadro_ko.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ko.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.qm [ 17%] Generating libavogadro_ms.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ms.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.qm [ 17%] Generating libavogadro_nb.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/nb.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.ts [ 17%] Generating libavogadro_nl.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/nl.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.ts Scanning directory '/<>/libavogadro/src'... Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.qm [ 17%] Generating libavogadro_oc.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/oc.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.qm [ 17%] Generating libavogadro_pl.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/pl.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.ts [ 17%] Generating libavogadro_pt.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/pt.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.qm [ 17%] Generating libavogadro_pt_BR.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/pt_BR.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.qm [ 18%] Generating libavogadro_ru.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ru.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.ts [ 18%] Generating libavogadro_sk.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/sk.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sk.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sk.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.qm [ 18%] Generating libavogadro_sl.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/sl.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.qm [ 18%] Generating libavogadro_sq.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/sq.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sk.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sk.qm [ 18%] Generating libavogadro_sr.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/sr.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sr.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sr.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.qm [ 18%] Generating libavogadro_sv.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/sv.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sv.ts [ 18%] Generating libavogadro_th.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sv.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/th.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sr.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sr.qm [ 18%] Generating libavogadro_tr.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/tr.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_tr.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_tr.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sv.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sv.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.qm [ 18%] Generating libavogadro_ug.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ug.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.ts [ 18%] Generating libavogadro_uk.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/uk.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_uk.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_uk.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_tr.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_tr.qm [ 19%] Generating libavogadro_vi.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/vi.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.qm [ 19%] Generating libavogadro_zh_CN.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/zh_CN.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_uk.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_uk.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts Scanning directory '/<>/libavogadro/src'... [ 19%] Generating libavogadro_zh_TW.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/zh_TW.po -o /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_CN.qm cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts -qm /<>/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_TW.qm cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src /<>/obj-x86_64-linux-gnu/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/bond.cpp.o -c /<>/libavogadro/src/bond.cpp [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/animation.cpp.o -c /<>/libavogadro/src/animation.cpp cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/atom.cpp.o -c /<>/libavogadro/src/atom.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/bond.h:31, from /<>/libavogadro/src/bond.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/atom.h:31, from /<>/libavogadro/src/atom.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/libavogadro/src/global.h:29, from /<>/libavogadro/src/animation.h:29, from /<>/libavogadro/src/animation.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/camera.cpp.o -c /<>/libavogadro/src/camera.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/camera.h:35, from /<>/libavogadro/src/camera.cpp:28: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/color.cpp.o -c /<>/libavogadro/src/color.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/color.h:32, from /<>/libavogadro/src/color.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /<>/libavogadro/src/colorbutton.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colorbutton.h:31, from /<>/libavogadro/src/colorbutton.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/cube.cpp.o -c /<>/libavogadro/src/cube.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/cube.h:29, from /<>/libavogadro/src/cube.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /<>/libavogadro/src/cylinder_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/cylinder_p.h:30, from /<>/libavogadro/src/cylinder_p.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Linking CXX shared library ../../../../../lib/libavogadro_OpenQube.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenQube.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libavogadro_OpenQube.so.0 -o ../../../../../lib/libavogadro_OpenQube.so.0.1.0 CMakeFiles/OpenQube.dir/atom.cpp.o CMakeFiles/OpenQube.dir/basisset.cpp.o CMakeFiles/OpenQube.dir/basissetloader.cpp.o CMakeFiles/OpenQube.dir/cube.cpp.o CMakeFiles/OpenQube.dir/gamessukout.cpp.o CMakeFiles/OpenQube.dir/gamessus.cpp.o CMakeFiles/OpenQube.dir/orca.cpp.o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o CMakeFiles/OpenQube.dir/gaussianset.cpp.o CMakeFiles/OpenQube.dir/molden.cpp.o CMakeFiles/OpenQube.dir/molecule.cpp.o CMakeFiles/OpenQube.dir/mopacaux.cpp.o CMakeFiles/OpenQube.dir/slaterset.cpp.o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -lQtCore -lQtGui cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../../lib/libavogadro_OpenQube.so.0 ../../../../../lib/libavogadro_OpenQube.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target OpenQube make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces/openqube /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/DependInfo.cmake --color= Scanning dependencies of target qube make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 20%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/qube.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/qube.dir/qube.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/qube.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/iostream:38, from /<>/libavogadro/src/extensions/surfaces/openqube/qube.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockextension.cpp.o -c /<>/libavogadro/src/dockextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/plugin.h:29, from /<>/libavogadro/src/extension.h:28, from /<>/libavogadro/src/dockextension.h:28, from /<>/libavogadro/src/dockextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockwidget.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockwidget.cpp.o -c /<>/libavogadro/src/dockwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/libavogadro/src/dockwidget.h:21, from /<>/libavogadro/src/dockwidget.cpp:18: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -c /<>/libavogadro/src/elementdetail_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /<>/libavogadro/src/elementdetail_p.h:29, from /<>/libavogadro/src/elementdetail_p.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementitem_p.cpp.o -c /<>/libavogadro/src/elementitem_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /<>/libavogadro/src/elementitem_p.h:29, from /<>/libavogadro/src/elementitem_p.cpp:28: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Linking CXX executable ../../../../../bin/qube cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 /usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed CMakeFiles/qube.dir/qube.cpp.o -o ../../../../../bin/qube -rdynamic ../../../../../lib/libavogadro_OpenQube.so.0.1.0 -lQtOpenGL -lQtGui -lQtCore -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target qube [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementtranslator.cpp.o -c /<>/libavogadro/src/elementtranslator.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/elementtranslator.h:28, from /<>/libavogadro/src/elementtranslator.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/engine.cpp.o -c /<>/libavogadro/src/engine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engine.h:29, from /<>/libavogadro/src/engine.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/extension.cpp.o -c /<>/libavogadro/src/extension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/plugin.h:29, from /<>/libavogadro/src/extension.h:28, from /<>/libavogadro/src/extension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/fragment.cpp.o -c /<>/libavogadro/src/fragment.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/fragment.h:28, from /<>/libavogadro/src/fragment.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glhit.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glhit.cpp.o -c /<>/libavogadro/src/glhit.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/glhit.h:30, from /<>/libavogadro/src/glhit.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/global.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/global.cpp.o -c /<>/libavogadro/src/global.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/libavogadro/src/global.h:29, from /<>/libavogadro/src/global.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glpainter_p.cpp.o -c /<>/libavogadro/src/glpainter_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/glpainter_p.h:32, from /<>/libavogadro/src/glpainter_p.cpp:31: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glwidget.cpp.o -c /<>/libavogadro/src/glwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/camera.h:35, from /<>/libavogadro/src/glwidget.cpp:32: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/idlist.cpp.o -c /<>/libavogadro/src/idlist.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/idlist.h:28, from /<>/libavogadro/src/idlist.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/mesh.cpp.o -c /<>/libavogadro/src/mesh.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/mesh.h:30, from /<>/libavogadro/src/mesh.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/meshgenerator.cpp.o -c /<>/libavogadro/src/meshgenerator.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/meshgenerator.h:30, from /<>/libavogadro/src/meshgenerator.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /<>/libavogadro/src/mesh.cpp: In constructor ‘Avogadro::Mesh::Mesh(QObject*)’: /<>/libavogadro/src/mesh.cpp:38:30: warning: large integer implicitly truncated to unsigned type [-Woverflow] m_lock(new QReadWriteLock) ^ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/molecule.cpp.o -c /<>/libavogadro/src/molecule.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/molecule.h:29, from /<>/libavogadro/src/molecule.cpp:28: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moleculefile.cpp.o -c /<>/libavogadro/src/moleculefile.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/moleculefile.h:30, from /<>/libavogadro/src/moleculefile.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/navigate.cpp.o -c /<>/libavogadro/src/navigate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/navigate.h:28, from /<>/libavogadro/src/navigate.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /<>/libavogadro/src/neighborlist.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/neighborlist.h:30, from /<>/libavogadro/src/neighborlist.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/painter.cpp.o -c /<>/libavogadro/src/painter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/painter.h:32, from /<>/libavogadro/src/painter.cpp:28: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o -c /<>/libavogadro/src/periodictablescene_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qgraphicsscene.h:45, from /usr/include/qt4/QtGui/QGraphicsScene:1, from /<>/libavogadro/src/periodictablescene_p.h:28, from /<>/libavogadro/src/periodictablescene_p.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/periodictableview.cpp.o -c /<>/libavogadro/src/periodictableview.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/periodictableview.h:28, from /<>/libavogadro/src/periodictableview.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotaxis.cpp.o -c /<>/libavogadro/src/plotaxis.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /<>/libavogadro/src/plotaxis.h:32, from /<>/libavogadro/src/plotaxis.cpp:29: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotobject.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotobject.cpp.o -c /<>/libavogadro/src/plotobject.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /<>/libavogadro/src/plotobject.h:32, from /<>/libavogadro/src/plotobject.cpp:29: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotpoint.cpp.o -c /<>/libavogadro/src/plotpoint.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/plotpoint.h:32, from /<>/libavogadro/src/plotpoint.cpp:29: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotwidget.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotwidget.cpp.o -c /<>/libavogadro/src/plotwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plotaxis.h:32, from /<>/libavogadro/src/plotwidget.h:32, from /<>/libavogadro/src/plotwidget.cpp:29: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plugin.cpp.o -c /<>/libavogadro/src/plugin.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/plugin.h:29, from /<>/libavogadro/src/plugin.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pluginmanager.cpp.o -c /<>/libavogadro/src/pluginmanager.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/pluginmanager.h:30, from /<>/libavogadro/src/pluginmanager.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/primitive.cpp.o -c /<>/libavogadro/src/primitive.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/libavogadro/src/global.h:29, from /<>/libavogadro/src/primitive.h:31, from /<>/libavogadro/src/primitive.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/primitivelist.cpp.o -c /<>/libavogadro/src/primitivelist.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/primitivelist.h:28, from /<>/libavogadro/src/primitivelist.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/protein.cpp.o -c /<>/libavogadro/src/protein.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/protein.h:28, from /<>/libavogadro/src/protein.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/readfilethread_p.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o -c /<>/libavogadro/src/readfilethread_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qthread.h:45, from /usr/include/qt4/QtCore/QThread:1, from /<>/libavogadro/src/readfilethread_p.h:26, from /<>/libavogadro/src/readfilethread_p.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/residue.cpp.o -c /<>/libavogadro/src/residue.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /<>/libavogadro/src/residue.h:29, from /<>/libavogadro/src/residue.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/sphere_p.cpp.o -c /<>/libavogadro/src/sphere_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/sphere_p.h:30, from /<>/libavogadro/src/sphere_p.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o -c /<>/libavogadro/src/textrenderer_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/textrenderer_p.h:31, from /<>/libavogadro/src/textrenderer_p.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o -c /<>/libavogadro/src/textmatrixeditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/textmatrixeditor.h:30, from /<>/libavogadro/src/textmatrixeditor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/tool.cpp.o -c /<>/libavogadro/src/tool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/tool.h:28, from /<>/libavogadro/src/tool.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/toolgroup.cpp.o -c /<>/libavogadro/src/toolgroup.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/toolgroup.h:28, from /<>/libavogadro/src/toolgroup.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/undosequence.cpp.o -c /<>/libavogadro/src/undosequence.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/undosequence.h:28, from /<>/libavogadro/src/undosequence.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/zmatrix.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/zmatrix.cpp.o -c /<>/libavogadro/src/zmatrix.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/libavogadro/src/global.h:29, from /<>/libavogadro/src/zmatrix.h:28, from /<>/libavogadro/src/zmatrix.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o -c /<>/libavogadro/src/pythoninterpreter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/pythoninterpreter.h:28, from /<>/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonscript.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonscript.cpp.o -c /<>/libavogadro/src/pythonscript.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/pythonscript.h:29, from /<>/libavogadro/src/pythonscript.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonerror.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonerror.cpp.o -c /<>/libavogadro/src/pythonerror.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pythonerror.h:28, from /<>/libavogadro/src/pythonerror.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythontool_p.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythontool_p.cpp.o -c /<>/libavogadro/src/pythontool_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/pythontool_p.h:32, from /<>/libavogadro/src/pythontool_p.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o -c /<>/libavogadro/src/pythonengine_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/pythonengine_p.h:32, from /<>/libavogadro/src/pythonengine_p.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /<>/libavogadro/src/pythonextension_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/pythonextension_p.h:33, from /<>/libavogadro/src/pythonextension_p.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_animation.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_animation.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/animation.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_animation.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_atom.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_atom.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_atom.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/atom.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_atom.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_bond.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_bond.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_bond.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/bond.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_bond.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_color.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_color.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_color.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/color.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_color.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_colorbutton.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/colorbutton.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_colorbutton.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_cube.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_cube.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_cube.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/cube.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_cube.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_dockextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/dockextension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_dockextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_dockwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/dockwidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_dockwidget.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/elementdetail_p.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_elementtranslator.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/elementtranslator.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_elementtranslator.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_engine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_engine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_engine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/engine.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_engine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_extension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_extension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_extension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_extension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_fragment.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_fragment.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_fragment.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/fragment.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_fragment.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_glwidget.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_glwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/glwidget.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_glwidget.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_mesh.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_mesh.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_mesh.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/mesh.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_mesh.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_meshgenerator.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/meshgenerator.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_meshgenerator.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_molecule.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_molecule.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_molecule.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/molecule.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_molecule.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_moleculefile.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/moleculefile.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_moleculefile.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qgraphicsscene.h:45, from /usr/include/qt4/QtGui/QGraphicsScene:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/periodictablescene_p.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictableview.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/periodictableview.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictableview.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_plotwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plotaxis.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/plotwidget.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_plotwidget.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plugin.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_plugin.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_plugin.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_plugin.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pluginmanager.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/pluginmanager.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pluginmanager.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_primitive.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_primitive.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_primitive.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_protein.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_protein.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_protein.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/protein.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_protein.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qthread.h:45, from /usr/include/qt4/QtCore/QThread:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/readfilethread_p.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_residue.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_residue.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/residue.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_residue.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/textmatrixeditor.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_tool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_tool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_tool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/tool.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_tool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_toolgroup.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/toolgroup.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_toolgroup.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_zmatrix.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/zmatrix.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_zmatrix.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonerror.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonerror.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonerror.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:33, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pythontool_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/pythontool_p.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/moc_pythontool_p.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/qrc_pythontool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-x86_64-linux-gnu/libavogadro/src/qrc_pythontool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 29%] Linking CXX shared library ../../lib/libavogadro.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libavogadro.so.1 -o ../../lib/libavogadro.so.1.2.0 CMakeFiles/avogadro.dir/animation.cpp.o CMakeFiles/avogadro.dir/atom.cpp.o CMakeFiles/avogadro.dir/bond.cpp.o CMakeFiles/avogadro.dir/camera.cpp.o CMakeFiles/avogadro.dir/color.cpp.o CMakeFiles/avogadro.dir/colorbutton.cpp.o CMakeFiles/avogadro.dir/cube.cpp.o CMakeFiles/avogadro.dir/cylinder_p.cpp.o CMakeFiles/avogadro.dir/dockextension.cpp.o CMakeFiles/avogadro.dir/dockwidget.cpp.o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o CMakeFiles/avogadro.dir/elementitem_p.cpp.o CMakeFiles/avogadro.dir/elementtranslator.cpp.o CMakeFiles/avogadro.dir/engine.cpp.o CMakeFiles/avogadro.dir/extension.cpp.o CMakeFiles/avogadro.dir/fragment.cpp.o CMakeFiles/avogadro.dir/glhit.cpp.o CMakeFiles/avogadro.dir/global.cpp.o CMakeFiles/avogadro.dir/glpainter_p.cpp.o CMakeFiles/avogadro.dir/glwidget.cpp.o CMakeFiles/avogadro.dir/idlist.cpp.o CMakeFiles/avogadro.dir/mesh.cpp.o CMakeFiles/avogadro.dir/meshgenerator.cpp.o CMakeFiles/avogadro.dir/molecule.cpp.o CMakeFiles/avogadro.dir/moleculefile.cpp.o CMakeFiles/avogadro.dir/navigate.cpp.o CMakeFiles/avogadro.dir/neighborlist.cpp.o CMakeFiles/avogadro.dir/painter.cpp.o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o CMakeFiles/avogadro.dir/periodictableview.cpp.o CMakeFiles/avogadro.dir/plotaxis.cpp.o CMakeFiles/avogadro.dir/plotobject.cpp.o CMakeFiles/avogadro.dir/plotpoint.cpp.o CMakeFiles/avogadro.dir/plotwidget.cpp.o CMakeFiles/avogadro.dir/plugin.cpp.o CMakeFiles/avogadro.dir/pluginmanager.cpp.o CMakeFiles/avogadro.dir/primitive.cpp.o CMakeFiles/avogadro.dir/primitivelist.cpp.o CMakeFiles/avogadro.dir/protein.cpp.o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o CMakeFiles/avogadro.dir/residue.cpp.o CMakeFiles/avogadro.dir/sphere_p.cpp.o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o CMakeFiles/avogadro.dir/tool.cpp.o CMakeFiles/avogadro.dir/toolgroup.cpp.o CMakeFiles/avogadro.dir/undosequence.cpp.o CMakeFiles/avogadro.dir/zmatrix.cpp.o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o CMakeFiles/avogadro.dir/pythonscript.cpp.o CMakeFiles/avogadro.dir/pythonerror.cpp.o CMakeFiles/avogadro.dir/pythontool_p.cpp.o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o CMakeFiles/avogadro.dir/moc_animation.cxx.o CMakeFiles/avogadro.dir/moc_atom.cxx.o CMakeFiles/avogadro.dir/moc_bond.cxx.o CMakeFiles/avogadro.dir/moc_color.cxx.o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o CMakeFiles/avogadro.dir/moc_cube.cxx.o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o CMakeFiles/avogadro.dir/moc_engine.cxx.o CMakeFiles/avogadro.dir/moc_extension.cxx.o CMakeFiles/avogadro.dir/moc_fragment.cxx.o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o CMakeFiles/avogadro.dir/moc_mesh.cxx.o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o CMakeFiles/avogadro.dir/moc_molecule.cxx.o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o CMakeFiles/avogadro.dir/moc_plugin.cxx.o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o CMakeFiles/avogadro.dir/moc_primitive.cxx.o CMakeFiles/avogadro.dir/moc_protein.cxx.o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o CMakeFiles/avogadro.dir/moc_residue.cxx.o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o CMakeFiles/avogadro.dir/moc_tool.cxx.o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -lopenbabel -lQtOpenGL -lQtGui -lQtCore -lGLU -lGL -lGLEW -lpython2.7 -lboost_python engines/bsdyengine.a tools/navigatetool.a colors/elementcolor.a -lopenbabel -lQtGui -lQtCore -lGLU -lGL cd /<>/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/cmake -E cmake_symlink_library ../../lib/libavogadro.so.1.2.0 ../../lib/libavogadro.so.1 ../../lib/libavogadro.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target avogadro make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Generating moc_forceengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx_parameters [ 29%] Generating ui_sticksettingswidget.h [ 29%] Generating ui_axessettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_axessettingswidget.h /<>/libavogadro/src/engines/axessettingswidget.ui cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_sticksettingswidget.h /<>/libavogadro/src/engines/sticksettingswidget.ui [ 29%] Generating ui_cartoonsettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_cartoonsettingswidget.h /<>/libavogadro/src/engines/cartoonsettingswidget.ui [ 29%] Generating moc_stickengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx_parameters [ 29%] Generating moc_axesengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx_parameters [ 30%] Generating moc_cartoonengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= Scanning dependencies of target forceengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /<>/libavogadro/src/engines/forceengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/forceengine.h:28, from /<>/libavogadro/src/engines/forceengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target axesengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build Scanning dependencies of target stickengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /<>/libavogadro/src/engines/axesengine.cpp [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /<>/libavogadro/src/engines/stickengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/axesengine.h:28, from /<>/libavogadro/src/engines/axesengine.cpp:28: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/stickengine.h:29, from /<>/libavogadro/src/engines/stickengine.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target cartoonengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /<>/libavogadro/src/engines/cartoonengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/cartoonengine.h:29, from /<>/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Linking CXX shared module ../../../lib/forceengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target forceengine [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /<>/libavogadro/src/engines/cartoonmeshgenerator.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/cartoonmeshgenerator.h:41, from /<>/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Linking CXX shared module ../../../lib/axesengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target axesengine make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Generating ui_ringsettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_ringsettingswidget.h /<>/libavogadro/src/engines/ringsettingswidget.ui [ 32%] Generating moc_ringengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= Scanning dependencies of target ringengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /<>/libavogadro/src/engines/ringengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/ringengine.h:28, from /<>/libavogadro/src/engines/ringengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 32%] Linking CXX shared module ../../../lib/stickengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target stickengine make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Generating ui_spheresettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_spheresettingswidget.h /<>/libavogadro/src/engines/spheresettingswidget.ui [ 32%] Generating moc_sphereengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= Scanning dependencies of target sphereengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /<>/libavogadro/src/engines/sphereengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/sphereengine.h:30, from /<>/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Generating ui_hbondsettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_hbondsettingswidget.h /<>/libavogadro/src/engines/hbondsettingswidget.ui [ 33%] Generating moc_hbondengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= Scanning dependencies of target hbondengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /<>/libavogadro/src/engines/hbondengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/hbondengine.h:29, from /<>/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 33%] Linking CXX shared module ../../../lib/ringengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target ringengine make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Generating ui_dipolesettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_dipolesettingswidget.h /<>/libavogadro/src/engines/dipolesettingswidget.ui [ 33%] Generating moc_dipoleengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= Scanning dependencies of target dipoleengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /<>/libavogadro/src/engines/dipoleengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/dipoleengine.h:29, from /<>/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 33%] Linking CXX shared module ../../../lib/cartoonengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target cartoonengine make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Generating ui_wiresettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_wiresettingswidget.h /<>/libavogadro/src/engines/wiresettingswidget.ui [ 33%] Generating moc_wireengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= Scanning dependencies of target wireengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /<>/libavogadro/src/engines/wireengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/wireengine.h:29, from /<>/libavogadro/src/engines/wireengine.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 33%] Linking CXX shared module ../../../lib/sphereengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target sphereengine make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Generating moc_polygonengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= Scanning dependencies of target polygonengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /<>/libavogadro/src/engines/polygonengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/polygonengine.h:28, from /<>/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 34%] Linking CXX shared module ../../../lib/hbondengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 34%] Built target hbondengine make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 34%] Generating ui_qtaimsettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_qtaimsettingswidget.h /<>/libavogadro/src/engines/qtaimsettingswidget.ui [ 34%] Generating moc_qtaimengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= Scanning dependencies of target qtaimengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /<>/libavogadro/src/engines/qtaimengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/qtaimengine.h:29, from /<>/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 34%] Linking CXX shared module ../../../lib/dipoleengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 34%] Built target dipoleengine [ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 34%] Linking CXX shared module ../../../lib/polygonengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 34%] Built target polygonengine make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Generating moc_simplewireengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= Scanning dependencies of target simplewireengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /<>/libavogadro/src/engines/simplewireengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/simplewireengine.h:28, from /<>/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Linking CXX shared module ../../../lib/wireengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 36%] Generating ui_ribbonsettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_ribbonsettingswidget.h /<>/libavogadro/src/engines/ribbonsettingswidget.ui [ 36%] Generating moc_ribbonengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx_parameters make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target wireengine make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 36%] Generating ui_surfacesettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_surfacesettingswidget.h /<>/libavogadro/src/engines/surfacesettingswidget.ui [ 36%] Generating moc_surfaceengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build Scanning dependencies of target ribbonengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 36%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /<>/libavogadro/src/engines/surfaceengine.cpp [ 36%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /<>/libavogadro/src/engines/ribbonengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/ribbonengine.h:28, from /<>/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/surfaceengine.h:30, from /<>/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Linking CXX shared module ../../../lib/simplewireengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target simplewireengine [ 36%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Linking CXX shared module ../../../lib/qtaimengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target qtaimengine [ 37%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Generating ui_labelsettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_labelsettingswidget.h /<>/libavogadro/src/engines/labelsettingswidget.ui [ 37%] Generating moc_labelengine.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= [ 37%] Linking CXX shared module ../../../lib/ribbonengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: Scanning dependencies of target labelengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /<>/libavogadro/src/engines/labelengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/labelengine.h:31, from /<>/libavogadro/src/engines/labelengine.cpp:28: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 38%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target ribbonengine make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 38%] Generating qrc_selectrotatetool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name selectrotatetool -o /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx /<>/libavogadro/src/tools/selectrotatetool.qrc [ 38%] Generating moc_selectrotatetool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target selectrotatetool make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /<>/libavogadro/src/tools/selectrotatetool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /<>/libavogadro/src/tools/selectrotatetool.h:33, from /<>/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 39%] Linking CXX shared module ../../../lib/surfaceengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 39%] Built target surfaceengine make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 39%] Generating qrc_bondcentrictool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name bondcentrictool -o /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx /<>/libavogadro/src/tools/bondcentrictool.qrc [ 39%] Generating moc_bondcentrictool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx_parameters [ 39%] Generating moc_skeletontree.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= Scanning dependencies of target bondcentrictool make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /<>/libavogadro/src/tools/bondcentrictool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/tools/skeletontree.h:35, from /<>/libavogadro/src/tools/bondcentrictool.h:34, from /<>/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /<>/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/tools/skeletontree.h:35, from /<>/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Linking CXX shared module ../../../lib/labelengine.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 40%] Built target labelengine [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Generating qrc_autorotatetool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name autorotatetool -o /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx /<>/libavogadro/src/tools/autorotatetool.qrc [ 40%] Generating moc_autorotatetool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target autorotatetool make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /<>/libavogadro/src/tools/autorotatetool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/tools/autorotatetool.h:28, from /<>/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Generating qrc_drawtool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name drawtool -o /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx /<>/libavogadro/src/tools/drawtool.qrc [ 40%] Generating moc_drawtool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= Scanning dependencies of target drawtool make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /<>/libavogadro/src/tools/drawtool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /<>/libavogadro/src/tools/drawtool.h:30, from /<>/libavogadro/src/tools/drawtool.cpp:30: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Linking CXX shared module ../../../lib/selectrotatetool.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 40%] Built target selectrotatetool [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /<>/libavogadro/src/tools/drawcommand.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/tools/drawcommand.h:31, from /<>/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /<>/libavogadro/src/tools/drawcommand.cpp: In constructor ‘Avogadro::AddBondDrawCommandPrivate::AddBondDrawCommandPrivate()’: /<>/libavogadro/src/tools/drawcommand.cpp:533:53: warning: large integer implicitly truncated to unsigned type [-Woverflow] postCommandEnd(0) {} ^ /<>/libavogadro/src/tools/drawcommand.cpp:533:53: warning: large integer implicitly truncated to unsigned type [-Woverflow] [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Linking CXX shared module ../../../lib/autorotatetool.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 40%] Built target autorotatetool [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Generating qrc_manipulatetool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name manipulatetool -o /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx /<>/libavogadro/src/tools/manipulatetool.qrc [ 40%] Generating moc_manipulatetool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx_parameters [ 40%] Generating ui_manipulatesettingswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/ui_manipulatesettingswidget.h /<>/libavogadro/src/tools/manipulatesettingswidget.ui cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= Scanning dependencies of target manipulatetool make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /<>/libavogadro/src/tools/manipulatetool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/tools/manipulatetool.h:27, from /<>/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Generating qrc_autoopttool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name autoopttool -o /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx /<>/libavogadro/src/tools/autoopttool.qrc [ 40%] Generating moc_autoopttool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= Scanning dependencies of target autoopttool make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /<>/libavogadro/src/tools/autoopttool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/tools/autoopttool.h:28, from /<>/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Linking CXX shared module ../../../lib/bondcentrictool.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 40%] Built target bondcentrictool [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/drawtool.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Linking CXX shared module ../../../lib/drawtool.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 40%] Built target drawtool make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Generating qrc_clickmeasuretool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name clickmeasuretool -o /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx /<>/libavogadro/src/tools/clickmeasuretool.qrc [ 41%] Generating moc_clickmeasuretool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= Scanning dependencies of target clickmeasuretool make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /<>/libavogadro/src/tools/clickmeasuretool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/tools/clickmeasuretool.h:31, from /<>/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /<>/libavogadro/src/tools/eyecandy.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/new:39, from /usr/include/eigen3/Eigen/Core:59, from /<>/libavogadro/src/tools/eyecandy.h:30, from /<>/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Linking CXX shared module ../../../lib/autoopttool.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target autoopttool [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /<>/libavogadro/src/tools/moveatomcommand.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/tools/moveatomcommand.h:30, from /<>/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Generating qrc_aligntool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name aligntool -o /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx /<>/libavogadro/src/tools/aligntool.qrc [ 42%] Generating moc_aligntool.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= Scanning dependencies of target aligntool make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/aligntool.cpp.o -c /<>/libavogadro/src/tools/aligntool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /<>/libavogadro/src/tools/aligntool.h:28, from /<>/libavogadro/src/tools/aligntool.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/aligntool.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Linking CXX shared module ../../../lib/clickmeasuretool.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Generating ui_insertfragmentdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_insertfragmentdialog.h /<>/libavogadro/src/extensions/insertfragmentdialog.ui [ 42%] Generating moc_insertfragmentextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters [ 42%] Generating moc_insertfragmentdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters [ 42%] Generating moc_sortfiltertreeproxymodel.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Scanning dependencies of target insertfragmentextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build [ 42%] Built target clickmeasuretool [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /<>/libavogadro/src/extensions/insertfragmentextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/insertfragmentextension.h:25, from /<>/libavogadro/src/extensions/insertfragmentextension.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Generating ui_insertdnadialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_insertdnadialog.h /<>/libavogadro/src/extensions/insertdnadialog.ui [ 42%] Generating moc_insertdnaextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertdnaextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -c /<>/libavogadro/src/extensions/insertdnaextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/insertdnaextension.h:22, from /<>/libavogadro/src/extensions/insertdnaextension.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 43%] Linking CXX shared module ../../../lib/manipulatetool.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 43%] Built target manipulatetool [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /<>/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/extensions/insertcommand.h:29, from /<>/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 44%] Linking CXX shared module ../../../lib/aligntool.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 44%] Built target aligntool [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertdnaextension.h:22, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 44%] Generating moc_selectextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= Scanning dependencies of target selectextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /<>/libavogadro/src/extensions/selectextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/selectextension.h:26, from /<>/libavogadro/src/extensions/selectextension.cpp:24: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /<>/libavogadro/src/extensions/insertfragmentdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/extensions/insertfragmentdialog.h:28, from /<>/libavogadro/src/extensions/insertfragmentdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx [ 44%] Linking CXX shared module ../../../lib/insertdnaextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/selectextension.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 44%] Built target insertdnaextension [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /<>/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/extensions/insertcommand.h:29, from /<>/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] Generating qrc_cartesianextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name cartesianextension -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx /<>/libavogadro/src/extensions/cartesianextension.qrc [ 45%] Generating moc_cartesianextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx_parameters [ 45%] Generating ui_cartesianeditor.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_cartesianeditor.h /<>/libavogadro/src/extensions/cartesianeditor.ui cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= Scanning dependencies of target cartesianextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o -c /<>/libavogadro/src/extensions/cartesianextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/cartesianextension.h:26, from /<>/libavogadro/src/extensions/cartesianextension.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 45%] Linking CXX shared module ../../../lib/selectextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] Generating ui_shaderdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_shaderdialog.h /<>/libavogadro/src/extensions/shaderdialog.ui make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 45%] Generating moc_shaderextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx_parameters [ 45%] Built target selectextension [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /<>/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, from /<>/libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, from /<>/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= Scanning dependencies of target shaderextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/shaderextension.cpp.o -c /<>/libavogadro/src/extensions/shaderextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/shaderextension.h:28, from /<>/libavogadro/src/extensions/shaderextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/cartesianextension.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/shaderextension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 45%] Linking CXX shared module ../../../lib/insertfragmentextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 45%] Built target insertfragmentextension make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] Generating moc_hydrogensextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= Scanning dependencies of target hydrogensextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /<>/libavogadro/src/extensions/hydrogensextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/hydrogensextension.h:26, from /<>/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Linking CXX shared module ../../../lib/cartesianextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target cartesianextension [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Generating moc_gl2psextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= Scanning dependencies of target gl2psextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o -c /<>/libavogadro/src/extensions/gl2psextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/gl2psextension.h:26, from /<>/libavogadro/src/extensions/gl2psextension.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Linking CXX shared module ../../../lib/shaderextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lGLEW -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target shaderextension make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Generating ui_pythonterminalwidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_pythonterminalwidget.h /<>/libavogadro/src/extensions/pythonterminalwidget.ui [ 46%] Generating moc_pythonterminal.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters [ 46%] Generating moc_highlighter.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= Scanning dependencies of target pythonterminal make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /<>/libavogadro/src/extensions/pythonterminal.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/libavogadro/src/extensions/pythonterminal.h:30, from /<>/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Generating ui_vrmldialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_vrmldialog.h /<>/libavogadro/src/extensions/vrmldialog.ui /<>/libavogadro/src/extensions/vrmldialog.ui: Warning: Buddy assignment: 'dimX' is not a valid widget. [ 46%] Generating moc_vrmlextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx_parameters [ 46%] Generating moc_vrmldialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= Scanning dependencies of target vrmlextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o -c /<>/libavogadro/src/extensions/vrmlextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/vrmldialog.h:30, from /<>/libavogadro/src/extensions/vrmlextension.h:28, from /<>/libavogadro/src/extensions/vrmlextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Linking CXX shared module ../../../lib/hydrogensextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target hydrogensextension [ 46%] Building C object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o -c /<>/libavogadro/src/extensions/gl2ps/gl2ps.c In file included from /usr/include/stdio.h:27:0, from /<>/libavogadro/src/extensions/gl2ps/gl2ps.h:39, from /<>/libavogadro/src/extensions/gl2ps/gl2ps.c:36: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Generating moc_propextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx_parameters [ 46%] Generating __/tools/moc_skeletontree.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters [ 46%] Generating moc_propmodel.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= Scanning dependencies of target propextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /<>/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/tools/skeletontree.h:35, from /<>/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o -c /<>/libavogadro/src/extensions/vrmlpainter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/extensions/vrmlpainter.h:4, from /<>/libavogadro/src/extensions/vrmlpainter.cpp:3: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gl2psextension.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Linking CXX shared module ../../../lib/gl2psextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/gl2psextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/gl2psextension.so CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target gl2psextension [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /<>/libavogadro/src/extensions/highlighter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /<>/libavogadro/src/extensions/highlighter.h:22, from /<>/libavogadro/src/extensions/highlighter.cpp:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Generating ui_insertpeptidedialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_insertpeptidedialog.h /<>/libavogadro/src/extensions/insertpeptidedialog.ui [ 47%] Generating moc_insertpeptideextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertpeptideextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /<>/libavogadro/src/extensions/insertpeptideextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/insertpeptideextension.h:25, from /<>/libavogadro/src/extensions/insertpeptideextension.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /<>/libavogadro/src/extensions/propmodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/cmath:41, from /usr/include/c++/6/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /<>/libavogadro/src/extensions/propmodel.h:26, from /<>/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -c /<>/libavogadro/src/extensions/vrmldialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/vrmldialog.h:30, from /<>/libavogadro/src/extensions/vrmldialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /<>/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/extensions/insertcommand.h:29, from /<>/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmlextension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 48%] Linking CXX shared module ../../../lib/pythonterminal.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propextension.cpp.o -c /<>/libavogadro/src/extensions/propextension.cpp /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lpython2.7 -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/cmath:41, from /usr/include/c++/6/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /<>/libavogadro/src/extensions/propmodel.h:26, from /<>/libavogadro/src/extensions/propextension.h:25, from /<>/libavogadro/src/extensions/propextension.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 48%] Built target pythonterminal [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 49%] Generating moc_h2methylextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= Scanning dependencies of target h2methylextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o -c /<>/libavogadro/src/extensions/h2methylextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/h2methylextension.h:26, from /<>/libavogadro/src/extensions/h2methylextension.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Linking CXX shared module ../../../lib/vrmlextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vrmlextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/vrmlextension.so CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: [ 50%] Linking CXX shared module ../../../lib/insertpeptideextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: [ 50%] Built target vrmlextension make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Generating moc_invertchiralextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= Scanning dependencies of target invertchiralextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -c /<>/libavogadro/src/extensions/invertchiralextension.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/invertchiralextension.h:25, from /<>/libavogadro/src/extensions/invertchiralextension.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Built target insertpeptideextension [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:35, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/cmath:41, from /usr/include/c++/6/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Linking CXX shared module ../../../lib/h2methylextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target h2methylextension [ 51%] Linking CXX shared module ../../../lib/invertchiralextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/cmath:41, from /usr/include/c++/6/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target invertchiralextension make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Generating ui_conformersearchdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_conformersearchdialog.h /<>/libavogadro/src/extensions/conformersearchdialog.ui [ 51%] Generating moc_forcefieldextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters [ 51%] Generating moc_forcefielddialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters [ 51%] Generating moc_constraintsdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters [ 51%] Generating moc_constraintsmodel.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters [ 51%] Generating moc_conformersearchdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx_parameters [ 51%] Generating ui_forcefielddialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_forcefielddialog.h /<>/libavogadro/src/extensions/forcefielddialog.ui [ 52%] Generating ui_constraintsdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_constraintsdialog.h /<>/libavogadro/src/extensions/constraintsdialog.ui make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 52%] Generating moc_networkfetchextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= Scanning dependencies of target networkfetchextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o -c /<>/libavogadro/src/extensions/networkfetchextension.cpp Scanning dependencies of target forcefieldextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/networkfetchextension.h:28, from /<>/libavogadro/src/extensions/networkfetchextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /<>/libavogadro/src/extensions/forcefieldextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/forcefielddialog.h:25, from /<>/libavogadro/src/extensions/forcefieldextension.h:26, from /<>/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /<>/libavogadro/src/extensions/forcefielddialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/forcefielddialog.h:25, from /<>/libavogadro/src/extensions/forcefielddialog.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Linking CXX shared module ../../../lib/propextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 52%] Built target propextension [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/networkfetchextension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /<>/libavogadro/src/extensions/constraintsdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/bits/stl_algobase.h:59, from /usr/include/c++/6/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /<>/libavogadro/src/extensions/constraintsmodel.h:26, from /<>/libavogadro/src/extensions/constraintsdialog.h:25, from /<>/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 52%] Generating ui_molecularpropdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_molecularpropdialog.h /<>/libavogadro/src/extensions/molecularpropdialog.ui [ 52%] Generating moc_molecularpropextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters [ 52%] Linking CXX shared module ../../../lib/networkfetchextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= Scanning dependencies of target molecularpropextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -c /<>/libavogadro/src/extensions/molecularpropextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/molecularpropextension.h:25, from /<>/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 52%] Built target networkfetchextension [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /<>/libavogadro/src/extensions/constraintsmodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/bits/stl_algobase.h:59, from /usr/include/c++/6/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /<>/libavogadro/src/extensions/constraintsmodel.h:26, from /<>/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /<>/libavogadro/src/extensions/conformersearchdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/conformersearchdialog.h:25, from /<>/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Linking CXX shared module ../../../lib/molecularpropextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 52%] Built target molecularpropextension [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/bits/stl_algobase.h:59, from /usr/include/c++/6/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/bits/stl_algobase.h:59, from /usr/include/c++/6/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 53%] Generating qrc_animationextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name animationextension -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx /<>/libavogadro/src/extensions/animationextension.qrc [ 53%] Generating moc_animationextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx_parameters [ 53%] Generating moc_animationdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx_parameters [ 54%] Generating ui_animationdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_animationdialog.h /<>/libavogadro/src/extensions/animationdialog.ui cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= Scanning dependencies of target animationextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /<>/libavogadro/src/extensions/animationextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/animationextension.h:25, from /<>/libavogadro/src/extensions/animationextension.cpp:24: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 54%] Generating ui_povraydialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_povraydialog.h /<>/libavogadro/src/extensions/povraydialog.ui [ 54%] Generating moc_povrayextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx_parameters [ 54%] Generating moc_povraydialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= Scanning dependencies of target povrayextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /<>/libavogadro/src/extensions/povrayextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/povraydialog.h:30, from /<>/libavogadro/src/extensions/povrayextension.h:28, from /<>/libavogadro/src/extensions/povrayextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 54%] Generating ui_fileimportdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h /<>/libavogadro/src/extensions/fileimportdialog.ui [ 54%] Generating moc_fileimportextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= Scanning dependencies of target fileimportextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o -c /<>/libavogadro/src/extensions/fileimportextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h:12, from /<>/libavogadro/src/extensions/fileimportextension.h:28, from /<>/libavogadro/src/extensions/fileimportextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 54%] Linking CXX shared module ../../../lib/forcefieldextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 54%] Built target forcefieldextension [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /<>/libavogadro/src/extensions/animationdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/animationdialog.h:25, from /<>/libavogadro/src/extensions/animationdialog.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /<>/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/extensions/povpainter.h:28, from /<>/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 55%] Generating ui_supercelldialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h /<>/libavogadro/src/extensions/supercelldialog.ui [ 55%] Generating moc_supercellextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx_parameters [ 55%] Generating moc_supercelldialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= Scanning dependencies of target supercellextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/supercellextension.cpp.o -c /<>/libavogadro/src/extensions/supercellextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/supercellextension.h:29, from /<>/libavogadro/src/extensions/supercellextension.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /<>/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/extensions/povpainter.h:28, from /<>/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h:12, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 55%] Linking CXX shared module ../../../lib/fileimportextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 55%] Built target fileimportextension make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 56%] Generating ui_symmetrydialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/ui_symmetrydialog.h /<>/libavogadro/src/extensions/symmetry/symmetrydialog.ui [ 56%] Generating moc_symmetryextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/symmetry /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= Scanning dependencies of target symmetryextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 56%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o -c /<>/libavogadro/src/extensions/symmetry/symmetryextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/symmetry/symmetryextension.h:25, from /<>/libavogadro/src/extensions/symmetry/symmetryextension.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /<>/libavogadro/src/extensions/supercelldialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, from /<>/libavogadro/src/extensions/supercelldialog.h:23, from /<>/libavogadro/src/extensions/supercelldialog.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /<>/libavogadro/src/extensions/povraydialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/povraydialog.h:30, from /<>/libavogadro/src/extensions/povraydialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercellextension.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /<>/libavogadro/src/extensions/trajvideomaker.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/trajvideomaker.h:25, from /<>/libavogadro/src/extensions/trajvideomaker.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercelldialog.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/../../../../../libavogadro/src/extensions/symmetry/symmetryextension.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Linking CXX shared module ../../../lib/supercellextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 56%] Built target supercellextension [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 56%] Generating ui_ceviewoptionswidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceviewoptionswidget.h /<>/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.ui [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Generating moc_crystallographyextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx_parameters [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 57%] Generating moc_crystalpastedialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx_parameters [ 57%] Generating ui/moc_ceabstractdockwidget.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx_parameters [ 58%] Generating ui/moc_ceabstracteditor.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx_parameters [ 59%] Linking CXX shared module ../../../lib/animationextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: [ 59%] Generating ui/moc_cecoordinateeditor.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx_parameters [ 59%] Generating ui/moc_cematrixeditor.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx_parameters [ 59%] Generating ui/moc_ceparametereditor.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx_parameters [ 59%] Generating ui/moc_ceslabbuilder.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx_parameters [ 59%] Generating ui/moc_cetranslatewidget.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx_parameters make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 59%] Generating ui/moc_ceviewoptionswidget.cxx [ 59%] Built target animationextension cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx_parameters make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 59%] Generating ui_vibrationwidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_vibrationwidget.h /<>/libavogadro/src/extensions/spectra/vibrationwidget.ui [ 59%] Generating moc_vibrationextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx_parameters [ 59%] Generating ui_crystalpastedialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_crystalpastedialog.h /<>/libavogadro/src/extensions/crystallography/crystalpastedialog.ui [ 59%] Generating ui_cecoordinateeditor.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_cecoordinateeditor.h /<>/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.ui [ 59%] Generating ui_cematrixeditor.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_cematrixeditor.h /<>/libavogadro/src/extensions/crystallography/ui/cematrixeditor.ui [ 59%] Generating moc_vibrationwidget.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx_parameters [ 60%] Generating ui_ceparametereditor.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceparametereditor.h /<>/libavogadro/src/extensions/crystallography/ui/ceparametereditor.ui [ 60%] Linking CXX shared module ../../../../lib/symmetryextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/cmake -E cmake_link_script CMakeFiles/symmetryextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/symmetryextension.so CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL libmsym/libmsym.a -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: [ 60%] Generating ui_ceslabbuilder.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceslabbuilder.h /<>/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.ui [ 60%] Generating ui_cetranslatewidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_cetranslatewidget.h /<>/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.ui cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/crystallography /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/spectra /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= Scanning dependencies of target vibrationextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /<>/libavogadro/src/extensions/spectra/vibrationextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /<>/libavogadro/src/extensions/spectra/vibrationextension.h:26, from /<>/libavogadro/src/extensions/spectra/vibrationextension.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target symmetryextension make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Generating ui_tab_cd.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_cd.h /<>/libavogadro/src/extensions/spectra/tab_cd.ui [ 61%] Generating moc_spectraextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx_parameters Scanning dependencies of target crystallographyextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/avospglib.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -c /<>/libavogadro/src/extensions/crystallography/avospglib.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/new:39, from /usr/include/eigen3/Eigen/Core:59, from /<>/libavogadro/src/extensions/crystallography/avospglib.h:23, from /<>/libavogadro/src/extensions/crystallography/avospglib.cpp:18: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 61%] Generating moc_spectradialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx_parameters [ 62%] Generating moc_spectratype.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx_parameters [ 62%] Generating moc_abstract_ir.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx_parameters [ 62%] Generating moc_ir.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx_parameters [ 62%] Generating moc_nmr.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx_parameters [ 62%] Generating moc_dos.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx_parameters [ 62%] Generating moc_uv.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx_parameters [ 62%] Generating moc_cd.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx_parameters [ 62%] Generating moc_raman.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx_parameters [ 62%] Generating ui_spectradialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_spectradialog.h /<>/libavogadro/src/extensions/spectra/spectradialog.ui [ 63%] Generating ui_tab_ir_raman.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_ir_raman.h /<>/libavogadro/src/extensions/spectra/tab_ir_raman.ui [ 63%] Generating ui_tab_nmr.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_nmr.h /<>/libavogadro/src/extensions/spectra/tab_nmr.ui [ 63%] Generating ui_tab_dos.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_dos.h /<>/libavogadro/src/extensions/spectra/tab_dos.ui [ 63%] Generating ui_tab_uv.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_uv.h /<>/libavogadro/src/extensions/spectra/tab_uv.ui cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/spectra /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= Scanning dependencies of target spectraextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectraextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /<>/libavogadro/src/extensions/spectra/spectraextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/libavogadro/src/extensions/spectra/spectraextension.h:25, from /<>/libavogadro/src/extensions/spectra/spectraextension.cpp:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Linking CXX shared module ../../../lib/povrayextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 63%] Built target povrayextension [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /<>/libavogadro/src/extensions/spectra/spectradialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/libavogadro/src/extensions/spectra/spectradialog.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ceundo.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /<>/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /<>/libavogadro/src/extensions/crystallography/ceundo.h:26, from /<>/libavogadro/src/extensions/crystallography/ceundo.cpp:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 63%] Generating ui_surfacedialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /<>/libavogadro/src/extensions/surfaces/surfacedialog.ui [ 63%] Generating moc_surfaceextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx_parameters [ 63%] Generating moc_surfacedialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx_parameters [ 63%] Generating moc_vdwsurface.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters [ 63%] Generating qtiocompressor/moc_qtiocompressor.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /<>/libavogadro/src/extensions/surfaces/surfaceextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /<>/libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /<>/libavogadro/src/extensions/surfaces/surfaceextension.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -c /<>/libavogadro/src/extensions/spectra/vibrationwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /<>/libavogadro/src/extensions/spectra/vibrationwidget.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -c /<>/libavogadro/src/extensions/crystallography/crystallographyextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /<>/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /<>/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /<>/libavogadro/src/extensions/surfaces/surfacedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /<>/libavogadro/src/extensions/surfaces/surfacedialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationextension.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /<>/libavogadro/src/extensions/spectra/spectratype.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/spectra/spectratype.h:24, from /<>/libavogadro/src/extensions/spectra/spectratype.cpp:21: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /<>/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /<>/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -c /<>/libavogadro/src/extensions/spectra/abstract_ir.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /<>/libavogadro/src/extensions/spectra/abstract_ir.cpp:21: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Linking CXX shared module ../../../../lib/vibrationextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 63%] Built target vibrationextension [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -c /<>/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /<>/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /<>/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /<>/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /<>/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/ir.cpp.o -c /<>/libavogadro/src/extensions/spectra/ir.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /<>/libavogadro/src/extensions/spectra/ir.h:23, from /<>/libavogadro/src/extensions/spectra/ir.cpp:21: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 64%] Generating ui_orbitalsettingsdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h /<>/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.ui [ 64%] Generating moc_orbitalextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx_parameters [ 64%] Generating moc_orbitalsettingsdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx_parameters [ 64%] Generating moc_orbitaltablemodel.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx_parameters [ 64%] Generating moc_orbitalwidget.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx_parameters [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:18: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Generating moc_htmldelegate.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx_parameters [ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx [ 64%] Generating ui_orbitalwidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /<>/libavogadro/src/extensions/surfaces/orbitalwidget.ui cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target orbitalextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -c /<>/libavogadro/src/extensions/surfaces/orbitalextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /<>/libavogadro/src/extensions/surfaces/orbitalextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/nmr.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/nmr.cpp.o -c /<>/libavogadro/src/extensions/spectra/nmr.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /<>/libavogadro/src/extensions/spectra/nmr.h:23, from /<>/libavogadro/src/extensions/spectra/nmr.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:18: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 66%] Linking CXX shared module ../../../../lib/surfaceextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: [ 66%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:18: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /<>/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, from /<>/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 66%] Built target surfaceextension [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /<>/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /<>/libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, from /<>/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/dos.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/dos.cpp.o -c /<>/libavogadro/src/extensions/spectra/dos.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /<>/libavogadro/src/extensions/spectra/dos.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 67%] Generating ui_swcntbuilderwidget.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui [ 67%] Generating moc_swcntbuilderextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx_parameters [ 67%] Generating moc_swcntbuilderwidget.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx_parameters [ 67%] Generating moc_avotubegen.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/swcntbuilder /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /<>/libavogadro/src/extensions/surfaces/orbitalwidget.cpp Scanning dependencies of target swcntbuilderextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/libavogadro/src/extensions/surfaces/orbitalwidget.h:22, from /<>/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 67%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -c /<>/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/extensions/insertcommand.h:29, from /<>/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, from /<>/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp:18: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /<>/libavogadro/src/extensions/spectra/uv.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /<>/libavogadro/src/extensions/spectra/uv.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /<>/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /<>/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, from /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:18: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp:18: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /<>/libavogadro/src/extensions/spectra/cd.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /<>/libavogadro/src/extensions/spectra/cd.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, from /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /<>/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /<>/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /<>/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /<>/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /<>/libavogadro/src/extensions/surfaces/htmldelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, from /usr/include/qt4/QtGui/QStyledItemDelegate:1, from /<>/libavogadro/src/extensions/surfaces/htmldelegate.h:22, from /<>/libavogadro/src/extensions/surfaces/htmldelegate.cpp:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, from /<>/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:18: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/raman.cpp.o -c /<>/libavogadro/src/extensions/spectra/raman.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /<>/libavogadro/src/extensions/spectra/raman.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:22, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Linking CXX shared module ../../../../lib/swcntbuilderextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL tubegen/libtubegen.a -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target swcntbuilderextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 68%] Generating ui_lammpsinputdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_lammpsinputdialog.h /<>/libavogadro/src/extensions/quantuminput/lammpsinputdialog.ui [ 68%] Generating moc_inputfileextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx_parameters [ 68%] Generating moc_inputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters [ 68%] Generating moc_abinitinputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx_parameters [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx [ 68%] Generating moc_daltoninputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx_parameters In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Generating moc_gamessukinputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx_parameters [ 68%] Generating moc_gaussianinputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx_parameters [ 68%] Generating moc_molproinputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx_parameters [ 69%] Generating moc_mopacinputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx_parameters [ 69%] Generating moc_nwcheminputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx_parameters [ 69%] Generating moc_psi4inputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx_parameters [ 69%] Generating moc_qcheminputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx_parameters [ 69%] Generating moc_teracheminputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx_parameters [ 69%] Generating moc_lammpsinputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx_parameters [ 69%] Generating ui_abinitinputdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_abinitinputdialog.h /<>/libavogadro/src/extensions/quantuminput/abinitinputdialog.ui [ 69%] Generating ui_gaussianinputdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gaussianinputdialog.h /<>/libavogadro/src/extensions/quantuminput/gaussianinputdialog.ui [ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, from /<>/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp:18: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Generating ui_daltoninputdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_daltoninputdialog.h /<>/libavogadro/src/extensions/quantuminput/daltoninputdialog.ui [ 70%] Generating ui_gamessukinputdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessukinputdialog.h /<>/libavogadro/src/extensions/quantuminput/gamessukinputdialog.ui [ 70%] Generating ui_molproinputdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_molproinputdialog.h /<>/libavogadro/src/extensions/quantuminput/molproinputdialog.ui [ 70%] Generating ui_mopacinputdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_mopacinputdialog.h /<>/libavogadro/src/extensions/quantuminput/mopacinputdialog.ui [ 70%] Generating ui_nwcheminputdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_nwcheminputdialog.h /<>/libavogadro/src/extensions/quantuminput/nwcheminputdialog.ui [ 70%] Generating ui_psi4inputdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_psi4inputdialog.h /<>/libavogadro/src/extensions/quantuminput/psi4inputdialog.ui [ 70%] Generating ui_qcheminputdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_qcheminputdialog.h /<>/libavogadro/src/extensions/quantuminput/qcheminputdialog.ui [ 70%] Generating ui_teracheminputdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_teracheminputdialog.h /<>/libavogadro/src/extensions/quantuminput/teracheminputdialog.ui cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/quantuminput /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= Scanning dependencies of target inputfileextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/inputfileextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/quantuminput/inputfileextension.h:28, from /<>/libavogadro/src/extensions/quantuminput/inputfileextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:24, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, from /usr/include/qt4/QtGui/QStyledItemDelegate:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/htmldelegate.h:22, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Linking CXX shared module ../../../../lib/orbitalextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target orbitalextension [ 72%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Generating ui_gamessefpmatchdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /<>/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui [ 73%] Generating moc_gamessextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx_parameters [ 73%] Generating moc_gamessinputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx_parameters [ 73%] Generating moc_gamesshighlighter.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx_parameters [ 73%] Generating moc_gamessefpmatchdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx_parameters [ 73%] Generating ui_gamessinputdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /<>/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/quantuminput /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= Scanning dependencies of target gamessextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 73%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qprocess.h:45, from /usr/include/qt4/QtCore/QProcess:1, from /<>/libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gamessextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /<>/libavogadro/src/extensions/quantuminput/gamessextension.h:26, from /<>/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/nmr.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, from /<>/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp:10: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /<>/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_dos.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/dos.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_uv.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/uv.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, from /<>/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_cd.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/cd.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/raman.h:24, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/iostream:38, from /<>/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, from /<>/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qprocess.h:45, from /usr/include/qt4/QtCore/QProcess:1, from /<>/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, from /<>/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Linking CXX shared module ../../../../lib/spectraextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 76%] Built target spectraextension [ 76%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /<>/libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, from /<>/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, from /<>/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Linking CXX shared module ../../../../lib/crystallographyextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL spglib/libspglib.a -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 76%] Built target crystallographyextension make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 76%] Generating ui_orcaspectra.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h /<>/libavogadro/src/extensions/orca/orcaspectra.ui [ 76%] Generating moc_orcaextension.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx_parameters [ 76%] Generating moc_orcainputdialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx_parameters [ 76%] Generating moc_orcaanalysedialog.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx_parameters [ 76%] Generating moc_orcaspectra.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx_parameters [ 76%] Generating ui_orcainputdialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcainputdialog.h /<>/libavogadro/src/extensions/orca/orcainputdialog.ui /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget2'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget3'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget4'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget5'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget6'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget7'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget8'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget9'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget10'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget11'. [ 76%] Generating ui_orcaanalysedialog.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaanalysedialog.h /<>/libavogadro/src/extensions/orca/orcaanalysedialog.ui /<>/libavogadro/src/extensions/orca/orcaanalysedialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/orca /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= Scanning dependencies of target orcaextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 76%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaextension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaextension.cpp.o -c /<>/libavogadro/src/extensions/orca/orcaextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/extensions/orca/orcaextension.h:29, from /<>/libavogadro/src/extensions/orca/orcaextension.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -c /<>/libavogadro/src/extensions/orca/orcainputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/orca/orcainputdialog.h:28, from /<>/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessextension.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, from /<>/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 76%] Generating ui_residuecolorsettings.h cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/ui_residuecolorsettings.h /<>/libavogadro/src/colors/residuecolorsettings.ui [ 76%] Generating moc_residuecolor.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/colors /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= Scanning dependencies of target residuecolor make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 77%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/residuecolor.cpp.o -c /<>/libavogadro/src/colors/residuecolor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/residuecolor.h:28, from /<>/libavogadro/src/colors/residuecolor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/residuecolor.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, from /<>/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Linking CXX shared module ../../../lib/residuecolor.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target residuecolor make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Generating moc_atomindexcolor.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/colors /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= Scanning dependencies of target atomindexcolor make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /<>/libavogadro/src/colors/atomindexcolor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/atomindexcolor.h:28, from /<>/libavogadro/src/colors/atomindexcolor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -c /<>/libavogadro/src/extensions/orca/orcaanalysedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, from /<>/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/atomindexcolor.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Linking CXX shared module ../../../lib/atomindexcolor.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target atomindexcolor make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Generating moc_smartscolor.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/colors /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= Scanning dependencies of target smartscolor make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/smartscolor.cpp.o -c /<>/libavogadro/src/colors/smartscolor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/smartscolor.h:28, from /<>/libavogadro/src/colors/smartscolor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Linking CXX shared module ../../../../lib/gamessextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/gamessextension.so CMakeFiles/gamessextension.dir/inputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target gamessextension make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Generating moc_chargecolor.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/colors /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= Scanning dependencies of target chargecolor make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/chargecolor.cpp.o -c /<>/libavogadro/src/colors/chargecolor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/chargecolor.h:28, from /<>/libavogadro/src/colors/chargecolor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/smartscolor.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/chargecolor.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Linking CXX shared module ../../../lib/smartscolor.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/smartscolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/smartscolor.so CMakeFiles/smartscolor.dir/smartscolor.cpp.o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: [ 79%] Linking CXX shared module ../../../lib/chargecolor.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target smartscolor make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Generating moc_distancecolor.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/colors /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= Scanning dependencies of target distancecolor make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/distancecolor.cpp.o -c /<>/libavogadro/src/colors/distancecolor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/distancecolor.h:28, from /<>/libavogadro/src/colors/distancecolor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target chargecolor make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Generating moc_customcolor.cxx cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/colors /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= Scanning dependencies of target customcolor make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /<>/libavogadro/src/colors/customcolor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/customcolor.h:28, from /<>/libavogadro/src/colors/customcolor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 80%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/customcolor.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 80%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaspectra.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -c /<>/libavogadro/src/extensions/orca/orcaspectra.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, from /<>/libavogadro/src/extensions/orca/orcaspectra.h:26, from /<>/libavogadro/src/extensions/orca/orcaspectra.cpp:24: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 81%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/distancecolor.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 81%] Linking CXX shared module ../../../lib/customcolor.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target customcolor make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Generating moleculelist.moc cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/libavogadro/src/python/moleculelist.moc_parameters cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/python /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/python /<>/obj-x86_64-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, from /<>/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target python-module make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 82%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/animation.cpp.o -c /<>/libavogadro/src/python/animation.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /<>/libavogadro/src/python/animation.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 82%] Linking CXX shared module ../../../lib/distancecolor.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 82%] Built target distancecolor [ 82%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/atom.cpp.o -c /<>/libavogadro/src/python/atom.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/atom.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 82%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcadata.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcadata.cpp.o -c /<>/libavogadro/src/extensions/orca/orcadata.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/orca/orcadata.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 82%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaextension.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 82%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcainputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 82%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/bond.cpp.o -c /<>/libavogadro/src/python/bond.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/bond.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 82%] Generating avogadro_zh_TW.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/zh_TW.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.qm [ 82%] Generating aboutdialog.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/aboutdialog.moc_parameters [ 82%] Generating addenginedialog.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/addenginedialog.moc_parameters [ 82%] Generating application.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/application.moc_parameters [ 82%] Generating detachedview.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/detachedview.moc_parameters [ 82%] Generating enginecolorswidget.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/enginecolorswidget.moc_parameters [ 82%] Generating engineitemdelegate.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/engineitemdelegate.moc_parameters [ 82%] Generating engineitemmodel.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/engineitemmodel.moc_parameters [ 82%] Generating enginelistview.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/enginelistview.moc_parameters [ 82%] Generating engineprimitiveswidget.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/engineprimitiveswidget.moc_parameters [ 83%] Generating engineviewwidget.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/engineviewwidget.moc_parameters [ 83%] Generating flattabwidget.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/flattabwidget.moc_parameters [ 83%] Generating glgraphicsview.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/glgraphicsview.moc_parameters [ 83%] Generating importdialog.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/importdialog.moc_parameters [ 83%] Generating mainwindow.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/mainwindow.moc_parameters [ 83%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputfileextension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 83%] Generating pluginitemmodel.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/pluginitemmodel.moc_parameters [ 83%] Generating pluginlistview.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/pluginlistview.moc_parameters [ 83%] Generating pluginsettings.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/pluginsettings.moc_parameters [ 83%] Generating primitiveitemmodel.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/primitiveitemmodel.moc_parameters [ 84%] Generating primitivetreeview.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/primitivetreeview.moc_parameters [ 84%] Generating projecttreeeditor.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/projecttreeeditor.moc_parameters [ 84%] Generating projecttreemodel.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/projecttreemodel.moc_parameters [ 84%] Generating projecttreemodeldelegate.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/projecttreemodeldelegate.moc_parameters [ 84%] Generating savedialog.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/savedialog.moc_parameters [ 84%] Generating settingsdialog.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/settingsdialog.moc_parameters [ 84%] Generating atomdelegate.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/atomdelegate.moc_parameters [ 84%] Generating bonddelegate.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/bonddelegate.moc_parameters [ 84%] Generating labeldelegate.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/labeldelegate.moc_parameters [ 84%] Generating moleculedelegate.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/moleculedelegate.moc_parameters [ 85%] Generating residuedelegate.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/residuedelegate.moc_parameters [ 85%] Generating selectiondelegate.moc cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/<>/obj-x86_64-linux-gnu/avogadro/src/selectiondelegate.moc_parameters [ 85%] Generating ui_addenginedialog.h cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/avogadro/src/ui_addenginedialog.h /<>/avogadro/src/addenginedialog.ui [ 85%] Generating ui_enginecolorswidget.h cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/avogadro/src/ui_enginecolorswidget.h /<>/avogadro/src/enginecolorswidget.ui [ 85%] Generating ui_engineprimitiveswidget.h cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h /<>/avogadro/src/engineprimitiveswidget.ui [ 85%] Generating ui_importdialog.h cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/avogadro/src/ui_importdialog.h /<>/avogadro/src/importdialog.ui [ 85%] Generating ui_mainwindow.h cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/avogadro/src/ui_mainwindow.h /<>/avogadro/src/mainwindow.ui [ 85%] Generating ui_pluginsettings.h cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/avogadro/src/ui_pluginsettings.h /<>/avogadro/src/pluginsettings.ui [ 85%] Generating ui_projecttreeeditor.h cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/avogadro/src/ui_projecttreeeditor.h /<>/avogadro/src/projecttreeeditor.ui [ 86%] Generating ui_settingsdialog.h cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /<>/obj-x86_64-linux-gnu/avogadro/src/ui_settingsdialog.h /<>/avogadro/src/settingsdialog.ui [ 86%] Generating qrc_avogadro.cxx cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name avogadro -o /<>/obj-x86_64-linux-gnu/avogadro/src/qrc_avogadro.cxx /<>/avogadro/src/avogadro.qrc [ 86%] Generating avogadro_af.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/af.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_af.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_af.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_af.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_af.qm [ 86%] Generating avogadro_ar.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ar.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ar.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ar.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ar.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ar.qm [ 86%] Generating avogadro_bg.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/bg.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_bg.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_bg.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_bg.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_bg.qm [ 86%] Generating avogadro_ca.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ca.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.qm [ 86%] Generating avogadro_ca@valencia.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ca@valencia.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.qm [ 86%] Generating avogadro_cs.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/cs.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.qm [ 86%] Generating avogadro_da.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/da.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_da.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_da.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_da.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_da.qm [ 86%] Generating avogadro_de.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/de.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_de.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_de.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_de.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_de.qm [ 87%] Generating avogadro_el.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/el.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_el.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_el.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_el.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_el.qm [ 87%] Generating avogadro_en_AU.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/en_AU.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.qm [ 87%] Generating avogadro_en_CA.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/en_CA.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.qm [ 87%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaanalysedialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 87%] Generating avogadro_en_GB.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/en_GB.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.qm [ 87%] Generating avogadro_es.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/es.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.qm [ 87%] Generating avogadro_et.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/et.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_et.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_et.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_et.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_et.qm [ 87%] Generating avogadro_eu.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/eu.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.qm [ 87%] Generating avogadro_fi.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/fi.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_fi.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_fi.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_fi.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_fi.qm [ 87%] Generating avogadro_fr.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/fr.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.qm [ 88%] Generating avogadro_fr_CA.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/fr_CA.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr_CA.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr_CA.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr_CA.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr_CA.qm [ 88%] Generating avogadro_gl.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/gl.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.qm [ 88%] Generating avogadro_he.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/he.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.qm [ 88%] Generating avogadro_hi.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/hi.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.qm [ 88%] Generating avogadro_hr.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/hr.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.qm [ 88%] Generating avogadro_hu.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/hu.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.qm [ 88%] Generating avogadro_id.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/id.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.ts [ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.ts cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx Scanning directory '/<>/avogadro/src'... In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.qm [ 88%] Generating avogadro_it.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/it.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.qm [ 88%] Generating avogadro_ja.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ja.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.qm [ 89%] Generating avogadro_kn.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/kn.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_kn.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_kn.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_kn.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_kn.qm [ 89%] Generating avogadro_ko.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ko.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.qm [ 89%] Generating avogadro_ms.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ms.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.qm [ 89%] Generating avogadro_nb.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/nb.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.qm [ 89%] Generating avogadro_nl.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/nl.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_nl.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_nl.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_nl.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_nl.qm [ 89%] Generating avogadro_oc.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/oc.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.qm [ 89%] Generating avogadro_pl.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/pl.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.qm [ 89%] Generating avogadro_pt.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/pt.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt.qm [ 89%] Generating avogadro_pt_BR.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/pt_BR.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.qm [ 89%] Generating avogadro_ru.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ru.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ru.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ru.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ru.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ru.qm [ 90%] Generating avogadro_sk.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/sk.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.qm [ 90%] Generating avogadro_sl.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/sl.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sl.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sl.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sl.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sl.qm [ 90%] Generating avogadro_sq.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/sq.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.qm [ 90%] Generating avogadro_sr.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/sr.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sr.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sr.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sr.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sr.qm [ 90%] Generating avogadro_sv.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/sv.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.qm [ 90%] Generating avogadro_ta.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ta.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.qm [ 90%] Generating avogadro_te.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/te.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.qm [ 90%] Generating avogadro_th.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/th.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_th.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_th.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_th.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_th.qm [ 90%] Generating avogadro_tr.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/tr.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.qm [ 91%] Generating avogadro_ug.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ug.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.qm [ 91%] Generating avogadro_uk.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/uk.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_uk.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_uk.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_uk.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_uk.qm [ 91%] Generating avogadro_vi.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/vi.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.qm [ 91%] Generating avogadro_zh_CN.qm cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/zh_CN.po -o /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.ts cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.ts -qm /<>/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.qm cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/avogadro/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/avogadro/src /<>/obj-x86_64-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro-app make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -c /<>/avogadro/src/aboutdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/avogadro/src/aboutdialog.h:23, from /<>/avogadro/src/aboutdialog.cpp:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qprocess.h:45, from /usr/include/qt4/QtCore/QProcess:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaspectra.h:26, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -c /<>/avogadro/src/addenginedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-x86_64-linux-gnu/avogadro/src/ui_addenginedialog.h:12, from /<>/avogadro/src/addenginedialog.h:28, from /<>/avogadro/src/addenginedialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/camera.cpp.o -c /<>/libavogadro/src/python/camera.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/camera.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/application.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/application.cpp.o -c /<>/avogadro/src/application.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qcoreapplication.h:45, from /usr/include/qt4/QtGui/qapplication.h:45, from /usr/include/qt4/QtGui/QApplication:1, from /<>/avogadro/src/application.h:25, from /<>/avogadro/src/application.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Linking CXX shared module ../../../../lib/orcaextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orcaextension.so CMakeFiles/orcaextension.dir/orcaextension.cpp.o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o CMakeFiles/orcaextension.dir/orcadata.cpp.o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target orcaextension [ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/detachedview.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/detachedview.cpp.o -c /<>/avogadro/src/detachedview.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/avogadro/src/detachedview.h:28, from /<>/avogadro/src/detachedview.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/color.cpp.o -c /<>/libavogadro/src/python/color.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/color.cpp:3: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qprocess.h:45, from /usr/include/qt4/QtCore/QProcess:1, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/editcommands.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/editcommands.cpp.o -c /<>/avogadro/src/editcommands.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/avogadro/src/editcommands.h:28, from /<>/avogadro/src/editcommands.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o -c /<>/avogadro/src/enginecolorswidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-x86_64-linux-gnu/avogadro/src/ui_enginecolorswidget.h:12, from /<>/avogadro/src/enginecolorswidget.h:28, from /<>/avogadro/src/enginecolorswidget.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o -c /<>/avogadro/src/engineitemdelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, from /usr/include/qt4/QtGui/QStyledItemDelegate:1, from /<>/avogadro/src/engineitemdelegate.h:28, from /<>/avogadro/src/engineitemdelegate.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/cube.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/cube.cpp.o -c /<>/libavogadro/src/python/cube.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/cube.cpp:3: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -c /<>/avogadro/src/engineitemmodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtCore/QModelIndex:1, from /<>/avogadro/src/engineitemmodel.h:29, from /<>/avogadro/src/engineitemmodel.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginelistview.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -c /<>/avogadro/src/enginelistview.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qframe.h:45, from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, from /usr/include/qt4/QtGui/qabstractitemview.h:45, from /usr/include/qt4/QtGui/qlistview.h:45, from /usr/include/qt4/QtGui/QListView:1, from /<>/avogadro/src/enginelistview.h:25, from /<>/avogadro/src/enginelistview.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -c /<>/avogadro/src/engineprimitiveswidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-x86_64-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h:12, from /<>/avogadro/src/engineprimitiveswidget.h:27, from /<>/avogadro/src/engineprimitiveswidget.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -c /<>/avogadro/src/engineviewwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/avogadro/src/engineviewwidget.h:28, from /<>/avogadro/src/engineviewwidget.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/eigen.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/eigen.cpp.o -c /<>/libavogadro/src/python/eigen.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /<>/libavogadro/src/python/eigen.cpp:4: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1777:0, from /usr/include/python2.7/numpy/ndarrayobject.h:18, from /usr/include/python2.7/numpy/arrayobject.h:4, from /<>/libavogadro/src/python/eigen.cpp:5: /usr/include/python2.7/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ [ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -c /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/elementtranslator.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/elementtranslator.cpp.o -c /<>/libavogadro/src/python/elementtranslator.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/elementtranslator.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -c /<>/avogadro/src/flattabwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/avogadro/src/flattabwidget.h:26, from /<>/avogadro/src/flattabwidget.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Linking CXX shared module ../../../../lib/inputfileextension.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -c /<>/avogadro/src/glgraphicsview.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qmetatype.h:45, from /usr/include/qt4/QtGui/qgraphicsview.h:45, from /usr/include/qt4/QtGui/QGraphicsView:1, from /<>/avogadro/src/glgraphicsview.h:28, from /<>/avogadro/src/glgraphicsview.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target inputfileextension [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/importdialog.cpp.o -c /<>/avogadro/src/importdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-x86_64-linux-gnu/avogadro/src/ui_importdialog.h:12, from /<>/avogadro/src/importdialog.h:28, from /<>/avogadro/src/importdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/engine.cpp.o -c /<>/libavogadro/src/python/engine.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/engine.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/main.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/main.cpp.o -c /<>/avogadro/src/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/main.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/mainwindow.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -c /<>/avogadro/src/mainwindow.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/avogadro/src/mainwindow.cpp:24: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -c /<>/avogadro/src/pluginitemmodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, from /<>/avogadro/src/pluginitemmodel.h:29, from /<>/avogadro/src/pluginitemmodel.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/extension.cpp.o -c /<>/libavogadro/src/python/extension.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/extension.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/fragment.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/fragment.cpp.o -c /<>/libavogadro/src/python/fragment.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/fragment.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -c /<>/avogadro/src/pluginlistview.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, from /<>/avogadro/src/pluginlistview.h:27, from /<>/avogadro/src/pluginlistview.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -c /<>/avogadro/src/pluginsettings.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, from /<>/avogadro/src/pluginlistview.h:27, from /<>/avogadro/src/pluginsettings.h:25, from /<>/avogadro/src/pluginsettings.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/glwidget.cpp.o -c /<>/libavogadro/src/python/glwidget.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/glwidget.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/main.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/main.cpp.o -c /<>/libavogadro/src/python/main.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/python2.7/Python.h:19, from /<>/libavogadro/src/python/main.cpp:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/mesh.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/mesh.cpp.o -c /<>/libavogadro/src/python/mesh.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/mesh.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -c /<>/avogadro/src/primitiveitemmodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtCore/QAbstractItemModel:1, from /<>/avogadro/src/primitiveitemmodel.h:28, from /<>/avogadro/src/primitiveitemmodel.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /<>/libavogadro/src/python/glwidget.cpp: In function ‘void export_GLWidget()’: /<>/libavogadro/src/python/glwidget.cpp:53:55: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] class_ >("GLWidget") ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/detail/prologue.hpp:17, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/glwidget.cpp:2: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -c /<>/avogadro/src/primitivetreeview.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qframe.h:45, from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, from /usr/include/qt4/QtGui/qabstractitemview.h:45, from /usr/include/qt4/QtGui/qtreeview.h:45, from /usr/include/qt4/QtGui/QTreeView:1, from /<>/avogadro/src/primitivetreeview.h:25, from /<>/avogadro/src/primitivetreeview.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/meshgenerator.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/meshgenerator.cpp.o -c /<>/libavogadro/src/python/meshgenerator.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/meshgenerator.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -c /<>/avogadro/src/projecttreeeditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projecttreeeditor.h:47, from /<>/avogadro/src/projecttreeeditor.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -c /<>/avogadro/src/projecttreeitem.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projecttreeitem.h:28, from /<>/avogadro/src/projecttreeitem.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/molecule.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/molecule.cpp.o -c /<>/libavogadro/src/python/molecule.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/molecule.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -c /<>/avogadro/src/projecttreemodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projecttreemodel.h:28, from /<>/avogadro/src/projecttreemodel.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -c /<>/avogadro/src/projecttreemodeldelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projecttreemodeldelegate.h:25, from /<>/avogadro/src/projecttreemodeldelegate.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculefile.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculefile.cpp.o -c /<>/libavogadro/src/python/moleculefile.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/moleculefile.cpp:3: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/savedialog.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/savedialog.cpp.o -c /<>/avogadro/src/savedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/qdir.h:45, from /usr/include/qt4/QtGui/qfiledialog.h:45, from /usr/include/qt4/QtGui/QFileDialog:1, from /<>/avogadro/src/savedialog.h:25, from /<>/avogadro/src/savedialog.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -c /<>/avogadro/src/settingsdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-x86_64-linux-gnu/avogadro/src/ui_settingsdialog.h:12, from /<>/avogadro/src/settingsdialog.h:28, from /<>/avogadro/src/settingsdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculelist.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculelist.cpp.o -c /<>/libavogadro/src/python/moleculelist.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/python2.7/Python.h:19, from /<>/libavogadro/src/python/moleculelist.cpp:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /<>/libavogadro/src/python/molecule.cpp: In function ‘void export_Molecule()’: /<>/libavogadro/src/python/molecule.cpp:88:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr >("Molecule", no_init) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/detail/prologue.hpp:17, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/molecule.cpp:2: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -c /<>/avogadro/src/projectdelegates/atomdelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projectdelegates/atomdelegate.h:25, from /<>/avogadro/src/projectdelegates/atomdelegate.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -c /<>/avogadro/src/projectdelegates/bonddelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projectdelegates/bonddelegate.h:25, from /<>/avogadro/src/projectdelegates/bonddelegate.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/navigate.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/navigate.cpp.o -c /<>/libavogadro/src/python/navigate.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/navigate.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -c /<>/avogadro/src/projectdelegates/labeldelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projectdelegates/labeldelegate.h:25, from /<>/avogadro/src/projectdelegates/labeldelegate.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/neighborlist.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/neighborlist.cpp.o -c /<>/libavogadro/src/python/neighborlist.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/neighborlist.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -c /<>/avogadro/src/projectdelegates/moleculedelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projectdelegates/moleculedelegate.h:25, from /<>/avogadro/src/projectdelegates/moleculedelegate.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painter.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/painter.cpp.o -c /<>/libavogadro/src/python/painter.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/painter.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -c /<>/avogadro/src/projectdelegates/residuedelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projectdelegates/residuedelegate.h:25, from /<>/avogadro/src/projectdelegates/residuedelegate.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painterdevice.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/painterdevice.cpp.o -c /<>/libavogadro/src/python/painterdevice.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/painterdevice.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -c /<>/avogadro/src/projectdelegates/selectiondelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projectdelegates/selectiondelegate.h:25, from /<>/avogadro/src/projectdelegates/selectiondelegate.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/periodictableview.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/periodictableview.cpp.o -c /<>/libavogadro/src/python/periodictableview.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/periodictableview.cpp:3: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-x86_64-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/<>/obj-x86_64-linux-gnu/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -c /<>/obj-x86_64-linux-gnu/avogadro/src/qrc_avogadro.cxx In file included from /usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h:502, from /usr/include/c++/6/utility:68, from /usr/include/c++/6/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-x86_64-linux-gnu/avogadro/src/qrc_avogadro.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/plugin.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/plugin.cpp.o -c /<>/libavogadro/src/python/plugin.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/plugin.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Linking CXX executable ../../bin/avogadro cd /<>/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro-app.dir/link.txt --verbose=1 /usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o CMakeFiles/avogadro-app.dir/application.cpp.o CMakeFiles/avogadro-app.dir/detachedview.cpp.o CMakeFiles/avogadro-app.dir/editcommands.cpp.o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o CMakeFiles/avogadro-app.dir/importdialog.cpp.o CMakeFiles/avogadro-app.dir/main.cpp.o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o CMakeFiles/avogadro-app.dir/savedialog.cpp.o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -o ../../bin/avogadro -rdynamic -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lopenbabel ../../lib/libavogadro.so.1.2.0 -lX11 -lboost_python -lX11 -lboost_python -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target avogadro-app [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/pluginmanager.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/pluginmanager.cpp.o -c /<>/libavogadro/src/python/pluginmanager.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/pluginmanager.cpp:3: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitive.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/primitive.cpp.o -c /<>/libavogadro/src/python/primitive.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/primitive.cpp:3: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitivelist.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/primitivelist.cpp.o -c /<>/libavogadro/src/python/primitivelist.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/primitivelist.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qlist.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/qlist.cpp.o -c /<>/libavogadro/src/python/qlist.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/qlist.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qstring.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/qstring.cpp.o -c /<>/libavogadro/src/python/qstring.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/python2.7/Python.h:19, from /<>/libavogadro/src/python/qstring.cpp:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/residue.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/residue.cpp.o -c /<>/libavogadro/src/python/residue.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/residue.cpp:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/sip.cpp.o -c /<>/libavogadro/src/python/sip.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/sip.cpp:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/std_vector.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/std_vector.cpp.o -c /<>/libavogadro/src/python/std_vector.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/std_vector.cpp:3: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/swig.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/swig.cpp.o -c /<>/libavogadro/src/python/swig.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/swig.cpp:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/tool.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/tool.cpp.o -c /<>/libavogadro/src/python/tool.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/tool.cpp:3: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/toolgroup.cpp.o cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/toolgroup.cpp.o -c /<>/libavogadro/src/python/toolgroup.cpp In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h:34, from /usr/include/python2.7/Python.h:19, from /<>/libavogadro/src/python/toolgroup.cpp:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Linking CXX shared module ../../../lib/Avogadro.so cd /<>/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/python-module.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/Avogadro.so CMakeFiles/python-module.dir/animation.cpp.o CMakeFiles/python-module.dir/atom.cpp.o CMakeFiles/python-module.dir/bond.cpp.o CMakeFiles/python-module.dir/camera.cpp.o CMakeFiles/python-module.dir/color.cpp.o CMakeFiles/python-module.dir/cube.cpp.o CMakeFiles/python-module.dir/eigen.cpp.o CMakeFiles/python-module.dir/elementtranslator.cpp.o CMakeFiles/python-module.dir/engine.cpp.o CMakeFiles/python-module.dir/extension.cpp.o CMakeFiles/python-module.dir/fragment.cpp.o CMakeFiles/python-module.dir/glwidget.cpp.o CMakeFiles/python-module.dir/main.cpp.o CMakeFiles/python-module.dir/mesh.cpp.o CMakeFiles/python-module.dir/meshgenerator.cpp.o CMakeFiles/python-module.dir/molecule.cpp.o CMakeFiles/python-module.dir/moleculefile.cpp.o CMakeFiles/python-module.dir/moleculelist.cpp.o 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/<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target spglib make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/elementcolor.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces/openqube /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= [ 5%] Built target elementcolor make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/swcntbuilder/tubegen /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build [ 6%] Built target tubegen make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 7%] Built target bsdyengine make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/navigatetool.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 8%] Built target navigatetool make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src /<>/obj-x86_64-linux-gnu/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target OpenQube make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces/openqube /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target qube make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/CMakeFiles/avogadro.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target avogadro make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/forceengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target forceengine make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/axesengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/stickengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target axesengine make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= [ 30%] Built target stickengine make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build [ 31%] Built target cartoonengine make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ringengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target ringengine make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/hbondengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/sphereengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build [ 32%] Built target hbondengine make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= [ 33%] Built target sphereengine make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target dipoleengine make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/wireengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build [ 34%] Built target wireengine make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/polygonengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build [ 35%] Built target polygonengine make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target simplewireengine make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/engines /<>/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target qtaimengine make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target ribbonengine make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build [ 37%] Built target surfaceengine make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/labelengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target labelengine make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 39%] Built target selectrotatetool make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 39%] Built target autorotatetool make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/drawtool.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 40%] Built target bondcentrictool make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend [ 40%] Built target drawtool make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/tools /<>/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autoopttool.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 41%] Built target autoopttool make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build [ 42%] Built target manipulatetool make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/aligntool.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target aligntool make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 43%] Built target clickmeasuretool make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/selectextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 43%] Built target selectextension make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend [ 44%] Built target insertdnaextension make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= [ 44%] Built target cartesianextension make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 45%] Built target insertfragmentextension make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 45%] Built target gl2psextension make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend [ 45%] Built target shaderextension make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend [ 46%] Built target hydrogensextension make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target pythonterminal make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 48%] Built target insertpeptideextension make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend [ 49%] Built target h2methylextension make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target vrmlextension make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/propextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target propextension make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target invertchiralextension make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target networkfetchextension make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target molecularpropextension make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target fileimportextension make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/animationextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend [ 53%] Built target animationextension make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/symmetry /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build [ 54%] Built target povrayextension make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 56%] Built target forcefieldextension make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/crystallography /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/spectra /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 57%] Built target supercellextension make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 58%] Built target symmetryextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/spectra /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 59%] Built target vibrationextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 60%] Built target surfaceextension make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/swcntbuilder /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 63%] Built target orbitalextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend [ 64%] Built target swcntbuilderextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/quantuminput /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/quantuminput /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target crystallographyextension make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/orca /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca /<>/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target spectraextension make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/colors /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/residuecolor.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target residuecolor make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/colors /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 75%] Built target gamessextension make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/colors /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build [ 75%] Built target atomindexcolor make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/colors /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/smartscolor.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 75%] Built target smartscolor make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/colors /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/chargecolor.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 75%] Built target chargecolor make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/colors /<>/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/distancecolor.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 76%] Built target distancecolor make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/python /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/libavogadro/src/python /<>/obj-x86_64-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/customcolor.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target customcolor make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/avogadro/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/avogadro/src /<>/obj-x86_64-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target orcaextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 83%] Built target inputfileextension make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/python/CMakeFiles/python-module.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target python-module make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/src/CMakeFiles/avogadro-app.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target avogadro-app make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/avogadro/AvogadroConfig.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/AvogadroConfigVersion.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/AvogadroUse.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/cmake/FindEigen2.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/cmake/FindEigen3.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/cmake/FindGLEW.cmake -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbamides -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbamides/urea.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/dihydroxyacetone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-mannose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-allose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-galactose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-arabinose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glucose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-gulose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribulose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-altrose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylulose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-tagatose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-psicose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-idose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrulose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-threose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-sorbose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glyceraldehyde.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-lyxose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-talose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-fructose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-indole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/furan.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/nicotinic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/pyridine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_3-oxazole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/benzothiophene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/isonicotinic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/picolinic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-pyrazole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/isonicotinamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_2-thiazole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/benzofuran.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_2-oxazole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-pyrrole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/thiophene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/picolinamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/nicotinamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_3-thiazole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3_5-triene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5-triene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_4-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/Z-cyclooctene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclopenta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclopentene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/Z-cycloheptene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5_7-tetraene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_4-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-isoleucine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-4-nitrophenylalanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-leucine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tryptophan.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-proline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-threonine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-proline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-valine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-leucine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-histidine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-asparagine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-serine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-arginine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-allo-isoleucine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-methionine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-threonine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-histidine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-phenylalanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-cysteine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tryptophan.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-alanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-lysine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-asparagine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-allo-threonine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-aspartic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-phenylalanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-alanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-methionine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-lysine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tyrosine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-glutamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-isoleucine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tyrosine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-aspartic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-glutamic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-serine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-arginine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-valine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-cysteine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/glycine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/water.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/2-aminopropane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/triethylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/ethylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/triethylenediamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/diethylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/methylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/trimethylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/piperazine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/tert-butylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/azepane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/piperidine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/1H-azepine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/S-sec-butylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/ammonia.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/dimethylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/pyrrolidine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkynes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkynes/acetylene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkynes/propyne.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amides -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amides/oxamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amides/acetamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amides/N_N-dimethylformamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amides/N_N-dimethylacetamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amides/ethyl_carbamate.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ligands -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ligands/Cp-cyclopentadienyl.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclopentane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclononane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cubane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/abietic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-chair.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/adamantane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/trans-decahydronaphthalene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cis-decahydronaphthalene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclobutane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphor.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/norbornane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclodecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cycloheptane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-twist-boat.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclopropane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclooctane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nitriles -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nitriles/acetonitrile.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nitriles/isobutyronitrile.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nitriles/1_1_1-trichloroacetonitrile.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nitriles/propionitrile.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nitriles/butyronitrile.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C20.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C30.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C78.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C26.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C24.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C180.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C60-buckminsterfullerene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/PCBM.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C76.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C36.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C28.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C80.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C240.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C32.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C50.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C70.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/PC70BM.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/hexane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/hexadecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/tridecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/butane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/octane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/methane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/dodecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/eicosane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/undecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/heptane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/pentadecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/propane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/tetracosane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/ethane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/pentane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/nonane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/2-methylpropane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/tetradecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/decane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ketones -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ketones/cyclohexanone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ketones/butanone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ketones/methyl_vinyl_ketone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ketones/p-benzoquinone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ketones/acetone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nucleobases -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nucleobases/cytosine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nucleobases/thymine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nucleobases/adenine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nucleobases/uracil.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nucleobases/guanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-pent-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/2-methylbut-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/hept-1-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/propene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-3-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-pent-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hex-3-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/pent-1-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-3-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/but-1-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hex-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hex-3-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/ethene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-but-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/hex-1-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/2-methylbuta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-3-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/3E-penta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-4-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/oct-1-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-3-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/3Z_3-ethylhepta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hex-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-4-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-but-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/3Z-penta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/5-square-pyramidal.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-planar.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/4-planar.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-pyramidal.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/6-octahedral.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/5-trigonal-bipyramidal.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/4-tetrahedral.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/decanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/myristic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/oleic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/octanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linoleic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/lauric_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linolenic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/hexanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/arachidonic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/cervonic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/stearic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/pentanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/palmitic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/steroids -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/steroids/testosterone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/steroids/estradiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/steroids/cholesterol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-fluorene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/1_10-phenanthroline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/1H-indole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/7H-purine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/1_8-naphthyridine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/anthracene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/coumarin.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/caffeine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/aniline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-carbazole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/chromone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/phthalimide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-xanthene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/benzoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/benzothiophene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/cinnoline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/acridine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/quinoline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/2H-chromene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/anisole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/benzene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/toluene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/nitrobenzene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/4H-chromene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/phenanthrene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/naphthalene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/quinazoline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/benzaldehyde.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/benzofuran.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthylene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/isoquinoline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/1H-indene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/phenol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthenequinone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/tetralin.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/benzoyl_chloride.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/uric_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/sulfoxides -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/sulfoxides/dimethyl_sulfoxide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/methanethiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/ethane-1_2-dithiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/pentane-1-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/2-methylproprane-2-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/hexane-1-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/R_butane-2-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/butane-1-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-2-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-1-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/octane-1-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/ethanethiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/heptane-1-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/diisopropylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/di-tert-butylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydrofuran.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/dimethylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/1_4-dioxane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/dipropylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/dibutylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/ethylmethylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/diethylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydropyran.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aldehydes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aldehydes/acetaldehyde.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aldehydes/formaldehyde.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/macrocycles -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/macrocycles/porphin.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/macrocycles/phthalocyanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclohexanol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/2-aminoethanol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/methanol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-2-ol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/propane-1_2_3-triol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/ethanol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/but-2-yne-1_4-diol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-1-ol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/ethane-1_2-diol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclopentanol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butenedioic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-malic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-malic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-lactic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/butanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/oxalic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2-dichloroacetic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/formic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/acetic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trifluoroacetic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-lactic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/isobutyric_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trichloroacetic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/citric_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-tartaric_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/propanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-tartaric_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-ascorbic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-talopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-arabinopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-xylopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-idopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-ribopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-ribopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-galactopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-tagatopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-rhamnopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-idopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-glucopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fructopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-lyxopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-arabinopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-gulopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-allopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-lyxopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-galactopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-ribopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-ribopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucuronopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-gulopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-fucopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-allopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-xylopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-mannopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galacturonopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-talopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-psicopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-arabinopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-xylopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fucopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-sorbopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-mannopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-fucopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-rhamnopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-xylopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galactopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-arabinopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-tagatopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-lyxopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-rhamnopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-lyxopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/builder -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-tyr.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-sec.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-cys.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-val.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-cys.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-pro.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-thr.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-his.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-tyr.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-leu.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-ser.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-met.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-ser.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-arg.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-lys.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-glu.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-ile.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-asp.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-glu.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-his.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-trp.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-ala.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-leu.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-asn.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-asn.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-trp.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-val.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-ala.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-met.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-asp.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-gln.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-pro.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-ile.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-lys.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/gly.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-gln.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-arg.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-phe.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-phe.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-thr.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-pyl.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ATN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RTE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AST.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/STO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MTW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ACO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ASV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IWW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SAF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/TER.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/UWY.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/FAU.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MFI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MTN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/NON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SBN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/NES.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/OFF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/DFT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/FER.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SOD.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MOR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IWR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/DFO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LIT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SBT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ITH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MWW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SOF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SIV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MTT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MER.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/NAB.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/TUN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BEA.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ABW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BRE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/WEN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/NSI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/GME.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LTL.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/PUN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ERI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MOZ.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/GIS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/UEI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IHW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFG.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SZR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ISV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RWR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MFS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EDI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/UOS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/VSV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BCT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ATO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CHI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SVR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SAS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/HEU.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AET.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RRO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/UOZ.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IWV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MEP.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LOV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LTN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CLO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SSY.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/USI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/TON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AWW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/GOO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/THO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AHT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EMT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/JBW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RSN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SGT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IRR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SAO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/PON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CAS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SSF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/OSI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/DOH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EZT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BSV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IFR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BEC.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/FRA.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/STW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ITE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IWS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SAT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/STT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AEL.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/STI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AEI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EUO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MEI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CAN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AEN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MSO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/PHI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LEV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/PAR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MTF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BOG.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/YUG.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IMF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RWY.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ESV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/VNI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ATT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ZON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BPH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LIO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MAR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/NAT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CGS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MAZ.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LTA.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/DAC.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CGF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFG.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/WEI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ATV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/VET.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/JRY.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/UFI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ANA.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SAV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MEL.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CZP.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ITV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ETR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/OWE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RHO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/GIU.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/NPO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MRE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/GON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MSE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/APC.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/UTL.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MVY.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LOS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CFI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AWO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/PAU.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SOS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/KFI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BIK.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ZSM-5.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EPI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LAU.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFY.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/FAR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFX.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/APD.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/OBW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ATS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/DON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/OSO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/DDR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/TOL.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EAB.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/STF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BOF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/TSC.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CHA.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CDO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RUT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ITW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SBE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RTH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LTF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ITR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/VFI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SBS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/AuCu-Tetraauricupride.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/BiPd-Sobolevskite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/Au3Cu-Bogdanovite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/PtBi.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/Cu2MnAl-Heusler.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/FePt-Tetraferroplatinum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Cu0.5Fe0.5)Pt-Tulameenite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Ni0.5Fe0.5)Pt-Ferronickelplatinum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/CoFe-Wairauite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbonates -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbonates/CaMgC2O6-Dolomite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbonates/Li2CO3-Zabuyelite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbonates/MgCO3-Magnesite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbonates/Na2CO3-Natrite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbonates/CaCO3-Calcite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates/CaTiO3-Perovskite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates/Mg2TiO4-Qandilite-tetrag.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates/BaTiO3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates/MgTiO3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates/Mg2TiO4-Qandilite-cubic.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates/SrTiO3-Tausonite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Cs-Cesium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ga-Gallium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ce-Cerium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Tm-Thulium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Tl-Thallium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Mg-Magnesium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ho-Holmium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Yb-Ytterbium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/He-Helium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Lu-Lutetium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Am-Americium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/C-Graphite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ge-Germanium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Th-Thorium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/P-Phosphorus.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ne-Neon.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Cd-Cadmium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Li-Lithium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Zr-Zirconium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ni-Nickel.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Sr-Strontium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Re-Rhenium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pd-Palladium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Br-Bromine.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/As-Arsenolamprite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Sb-Antimony.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Rb-Rubidium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Si-Silicon.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ta-Tantalum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Tb-Terbium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/As-Arsenic.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Er-Erbium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Sc-Scandium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/W-Tungsten.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/S6-Sulfur.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/I-Iodine.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Bi-Bismuth.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/V-Vanadium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Eu-Europium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ir-Iridium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Xe-Xenon.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Sn-Tin-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Te-Tellurium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Mo-Molybdenum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-delta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Be-Beryllium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/La-Lanthanum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ba-Barium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ag-Silver.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pt-Platinum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Cl-Chlorine.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Au-Gold.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Se-Selenium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ac-Actinium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Al-Aluminum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/P-Phosphorus-black.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Zn-Zinc.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ar-Argon.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/C-Lonsdaleite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Nb-Niobium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Cr-Chromium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/C-Diamond.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Kr-Krypton.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Cu-Copper.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/In-Indium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Os-Osmium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-delta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Sm-Samarium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/K-Potassium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Na-Sodium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Gd-Gadolinium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/N-Nitrogen.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pr-Praseodymium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-epsilon.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Nd-Neodymium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pb-Lead.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Y-Yttrium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Dy-Dysprosium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Sn-Tin-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ru-Ruthenium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Rh-Rhodium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Co-Cobalt.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Hf-Hafnium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/B-Boron.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/silicates -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/silicates/Be3Al2(SiO3)6-Beryl.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydroxides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydroxides/KOH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydroxides/LiOH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ca(OH)2-Portlandite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydroxides/Mg(OH)2-Brucite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ni(OH)2-Theophrastite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/CuSO4.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/CoSO4.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/SrSO4-Celestine.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/PbSO4-Anglesite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-2(H2O)-Gypsum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/BaSO4-Barite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/MgSO4.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-Anhydrite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/Ca2C4O10H2.57-Oxalate-Whewellite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-cub.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/H3N-Ammonia.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/C10H10Fe-Ferrocene.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/CaC2O6.375H6-Oxalate-Weddellite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/LaAlO3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-rhomb.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/YBa2Cu3O6.9-YBCO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/FeMnO3-Bixbyite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/LiNbO3-LithiumNiobate.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/(NH4)MgPO4-6(H2O)-Struvite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Mg4Si6O22.82H13.64-Sepiolite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Kaolinite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Nacrite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Mg3(O12Si4)H2-Vermiculite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/AlSi2O6H-Pyrophyllite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Dickite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Al4KSi2O12-Illite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Lepidolite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Mn1.854Fe1.656Mg0.537Si0.953O9H4-Guidottiite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Mg2Al2SiO9H4-Amesite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Fe2.25Cl0.5H2.75-Fougerite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/FeSi2O6H-Nontronite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Zn2SiO5H2-Hemimorphite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si4O12Ca0.5-Montmorillonite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/nitrides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/nitrides/InN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/nitrides/GaN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/nitrides/BN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/nitrides/Si3N4-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/nitrides/AlN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/antimonides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/antimonides/InSb.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/antimonides/GaSb.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/antimonides/AlSb.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/PbSe-Clausthalite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/HgSe-Tiemannite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/Sb2Se3-Antimonselite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/BiSe.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/ZnSe.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/Bi2Se3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/CdSe-Cadmoselite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/(MgAl2)O4-Spinel.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Anatase.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/BaO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/YbO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/FeO-Wustite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite-tetrag.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/CeO2-Cerianite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/MnO-Manganosite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/V2O5-Shcherbinaite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/TaO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/La2O3-LanthanumOxide-A.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/NiFe2O4.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/CoFe2O4.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/MoO3-Molybdite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/NbO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/AgO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Sc2O3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/CaO-Lime.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/UO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/MnO2-Pyrolusite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Stishovite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Brookite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/VO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3-IndiumOxide.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Y2O3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/CuO-Tenorite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/VO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/V2O3-Karelianite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/CoO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/MoO2-Tugarinovite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO2-Cubic.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Coesite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Ag2O.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/MgO-Periclase.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Cristobalite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/PbO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SrO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Na2O.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/PtO2-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/RuO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Rh2O3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Cr2O3-Eskolaite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/ZnO-Zincite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/UO2-Uraninite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SmO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Fe3O4-Magnetite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SnO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/HfO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/IrO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Li2O.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Cu2O-Cuprite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/WO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/NbO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Rb2O.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/CdO-Monteponite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Fe2O3-Hematite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/K2O.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Al2O3-Corundum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/PdO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SnO2-Cassiterite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/NiO-Bunsenite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Rutile.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/PbO2-Scrutinyite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydrides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydrides/LiH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydrides/KH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydrides/PdH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydrides/NaH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/phosphides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/phosphides/AlP.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/phosphides/BP.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/phosphides/InP.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/phosphides/GaP.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Greenockite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/Sb2S3-Stibnite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/Bi2S3-Bismuthinite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Zincblende.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/HgS-Metacinnabar.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Wurtzite-2H.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Hawleyite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS2-Pyrite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/SnS-Herzenbergite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/PbS-Galena.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Sphalerite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-6H-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/SiC.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/WC.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-2H-Moissanite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-3C-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-Moissanite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/W2C.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-Ih.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-IV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-II.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-III.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VII.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/FeCl3-Molysite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/HgCl-Calomel.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/AlCl3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/NaCl-Halite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/CdCl2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/KCl-Sylvite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/CrCl3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/AlNa3F6-Cryolite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/CdI2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/PbFCl-Matlockite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/AgBr-Bromargyrite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/CaF2-Fluorite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/AgCl-Chlorargyrite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/CrCl2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/CsCl.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/KBr.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/telurides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/telurides/Bi2Te3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/telurides/ZnTe.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/telurides/BiTe.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/telurides/PbTe-Altaite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/telurides/CdTe.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/BAs.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/AlAs.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/GaAs.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/CoAs3-Skutterudite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/InAs.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/Co.87Fe.11Ni.13As3-Skutterudite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/NiAs-Nickeline.cif -- Installing: /<>/debian/tmp/usr/lib/pkgconfig/avogadro.pc -- Installing: /<>/debian/tmp/usr/bin/avopkg -- Installing: /<>/debian/tmp/usr/features/avogadro.prf -- Installing: /<>/debian/tmp/usr/include/avogadro/animation.h -- Installing: /<>/debian/tmp/usr/include/avogadro/atom.h -- Installing: /<>/debian/tmp/usr/include/avogadro/bond.h -- Installing: /<>/debian/tmp/usr/include/avogadro/camera.h -- Installing: /<>/debian/tmp/usr/include/avogadro/color3f.h -- Installing: /<>/debian/tmp/usr/include/avogadro/colorbutton.h -- Installing: /<>/debian/tmp/usr/include/avogadro/color.h -- Installing: /<>/debian/tmp/usr/include/avogadro/config.h -- Installing: /<>/debian/tmp/usr/include/avogadro/cube.h -- Installing: /<>/debian/tmp/usr/include/avogadro/dockextension.h -- Installing: /<>/debian/tmp/usr/include/avogadro/dockwidget.h -- Installing: /<>/debian/tmp/usr/include/avogadro/elementtranslator.h -- Installing: /<>/debian/tmp/usr/include/avogadro/engine.h -- Installing: /<>/debian/tmp/usr/include/avogadro/extension.h -- Installing: /<>/debian/tmp/usr/include/avogadro/fragment.h -- Installing: /<>/debian/tmp/usr/include/avogadro/glhit.h -- Installing: /<>/debian/tmp/usr/include/avogadro/global.h -- Installing: /<>/debian/tmp/usr/include/avogadro/glwidget.h -- Installing: /<>/debian/tmp/usr/include/avogadro/idlist.h -- Installing: /<>/debian/tmp/usr/include/avogadro/meshgenerator.h -- Installing: /<>/debian/tmp/usr/include/avogadro/mesh.h -- Installing: /<>/debian/tmp/usr/include/avogadro/moleculefile.h -- Installing: /<>/debian/tmp/usr/include/avogadro/molecule.h -- Installing: /<>/debian/tmp/usr/include/avogadro/navigate.h -- Installing: /<>/debian/tmp/usr/include/avogadro/neighborlist.h -- Installing: /<>/debian/tmp/usr/include/avogadro/obeigenconv.h -- Installing: /<>/debian/tmp/usr/include/avogadro/painterdevice.h -- Installing: /<>/debian/tmp/usr/include/avogadro/painter.h -- Installing: /<>/debian/tmp/usr/include/avogadro/periodictableview.h -- Installing: /<>/debian/tmp/usr/include/avogadro/plotaxis.h -- Installing: /<>/debian/tmp/usr/include/avogadro/plotobject.h -- Installing: /<>/debian/tmp/usr/include/avogadro/plotpoint.h -- Installing: /<>/debian/tmp/usr/include/avogadro/plotwidget.h -- Installing: /<>/debian/tmp/usr/include/avogadro/plugin.h -- Installing: /<>/debian/tmp/usr/include/avogadro/pluginmanager.h -- Installing: /<>/debian/tmp/usr/include/avogadro/primitive.h -- Installing: /<>/debian/tmp/usr/include/avogadro/primitivelist.h -- Installing: /<>/debian/tmp/usr/include/avogadro/protein.h -- Installing: /<>/debian/tmp/usr/include/avogadro/residue.h -- Installing: /<>/debian/tmp/usr/include/avogadro/textmatrixeditor.h -- Installing: /<>/debian/tmp/usr/include/avogadro/toolgroup.h -- Installing: /<>/debian/tmp/usr/include/avogadro/tool.h -- Installing: /<>/debian/tmp/usr/include/avogadro/undosequence.h -- Installing: /<>/debian/tmp/usr/include/avogadro/zmatrix.h -- Installing: /<>/debian/tmp/usr/include/avogadro/pythoninterpreter.h -- Installing: /<>/debian/tmp/usr/include/avogadro/pythonscript.h -- Installing: /<>/debian/tmp/usr/include/avogadro/pythonerror.h -- Installing: /<>/debian/tmp/usr/lib/libavogadro.so.1.2.0 -- Installing: /<>/debian/tmp/usr/lib/libavogadro.so.1 -- Installing: /<>/debian/tmp/usr/lib/libavogadro.so -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ar.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_bg.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_bs.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ca.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ca@valencia.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_cs.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_da.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_de.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_el.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_en_AU.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_en_CA.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_en_GB.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_es.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_et.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_eu.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_fi.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_fr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_gl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_he.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_hi.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_hu.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_id.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_it.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ja.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_kn.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ko.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ms.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_nb.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_nl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_oc.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_pl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_pt.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_pt_BR.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ru.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_sk.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_sl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_sq.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_sr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_sv.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_th.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_tr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ug.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_uk.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_vi.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_zh_CN.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_zh_TW.qm -- Installing: /<>/debian/tmp/usr/lib/avogadro/AvogadroTargets.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/AvogadroTargets-none.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/labelengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/labelengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/wireengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/wireengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/hbondengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/hbondengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/forceengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/forceengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/sphereengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/sphereengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/stickengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/stickengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/ribbonengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/ribbonengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/cartoonengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/cartoonengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/ringengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/ringengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/polygonengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/polygonengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/surfaceengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/surfaceengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/axesengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/axesengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/dipoleengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/dipoleengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/simplewireengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/simplewireengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/qtaimengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/qtaimengine.so" to "" -- Installing: /<>/debian/tmp/usr/share/libavogadro/engineScripts/wireframe.py -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/drawtool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/drawtool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/bondcentrictool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/bondcentrictool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/clickmeasuretool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/clickmeasuretool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/selectrotatetool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/selectrotatetool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/autoopttool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/autoopttool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/manipulatetool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/manipulatetool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/autorotatetool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/autorotatetool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/aligntool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/aligntool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/propextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/propextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/cartesianextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/cartesianextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/molecularpropextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/molecularpropextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/forcefieldextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/forcefieldextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/hydrogensextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/hydrogensextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/invertchiralextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/invertchiralextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/selectextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/selectextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/insertfragmentextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/insertfragmentextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/insertpeptideextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/insertpeptideextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/insertdnaextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/insertdnaextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/h2methylextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/h2methylextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/pythonterminal.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/pythonterminal.so" to "" -- Installing: /<>/debian/tmp/usr/share/libavogadro/extensionScripts/example.py -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/animationextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/animationextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/povrayextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/povrayextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/vrmlextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/vrmlextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/fileimportextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/fileimportextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/shaderextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/shaderextension.so" to "" -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/clip.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/gooch.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/light.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/marble.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/per-pixel-lighting.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/per_pixel2.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/phong-use-diffuse.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/phong.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/plasma.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/x-ray-cryos.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/x-ray.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/clip.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/gooch.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/light.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/marble.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/per-pixel-lighting.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/per_pixel2.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/phong-use-diffuse.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/phong.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/plasma.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/x-ray-cryos.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/x-ray.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/phong.params -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/x-ray-cryos.params -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/x-ray.params -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/supercellextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/supercellextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/networkfetchextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/networkfetchextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/gl2psextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/gl2psextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/symmetryextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/symmetryextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/cmake/libmsym/libmsymConfig.cmake -- Installing: /<>/debian/tmp/usr/lib/cmake/libmsym/libmsymConfigVersion.cmake -- Installing: /<>/debian/tmp/usr/lib/libmsym.a -- Installing: /<>/debian/tmp/usr/include/libmsym/msym.h -- Installing: /<>/debian/tmp/usr/include/libmsym/msym_error.h -- Installing: /<>/debian/tmp/usr/lib/cmake/libmsym/libmsymTargets.cmake -- Installing: /<>/debian/tmp/usr/lib/cmake/libmsym/libmsymTargets-none.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/crystallographyextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/crystallographyextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/vibrationextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/vibrationextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/spectraextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/spectraextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/surfaceextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/surfaceextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/orbitalextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/orbitalextension.so" to "" -- Installing: /<>/debian/tmp/usr/bin/qube -- Set runtime path of "/<>/debian/tmp/usr/bin/qube" to "" -- Installing: /<>/debian/tmp/usr/lib/libavogadro_OpenQube.so.0.1.0 -- Installing: /<>/debian/tmp/usr/lib/libavogadro_OpenQube.so.0 -- Installing: /<>/debian/tmp/usr/lib/libavogadro_OpenQube.so -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/swcntbuilderextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/swcntbuilderextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/inputfileextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/inputfileextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/gamessextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/gamessextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/orcaextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/orcaextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/colors/residuecolor.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/colors/residuecolor.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/colors/atomindexcolor.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/colors/atomindexcolor.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/colors/chargecolor.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/colors/chargecolor.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/colors/distancecolor.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/colors/distancecolor.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/colors/customcolor.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/colors/customcolor.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/colors/smartscolor.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/colors/smartscolor.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/Avogadro.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python2.7/dist-packages/Avogadro.so" to "" -- Installing: /<>/debian/tmp/usr/bin/avogadro -- Set runtime path of "/<>/debian/tmp/usr/bin/avogadro" to "" -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_af.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ar.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_bg.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ca.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ca@valencia.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_cs.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_da.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_de.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_el.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_en_AU.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_en_CA.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_en_GB.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_es.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_et.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_eu.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_fi.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_fr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_fr_CA.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_gl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_he.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_hi.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_hr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_hu.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_id.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_it.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ja.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_kn.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ko.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ms.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_nb.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_nl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_oc.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_pl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_pt.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_pt_BR.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ru.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_sk.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_sl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_sq.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_sr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_sv.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ta.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_te.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_th.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_tr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ug.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_uk.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_vi.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_zh_CN.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_zh_TW.qm -- Installing: /<>/debian/tmp/usr/share/applications/avogadro.desktop -- Installing: /<>/debian/tmp/usr/share/pixmaps/avogadro-icon.png -- Installing: /<>/debian/tmp/usr/share/man/man1/avogadro.1 -- Installing: /<>/debian/tmp/usr/share/man/man1/avopkg.1 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install --list-missing dh_install: Compatibility levels before 9 are deprecated (level 7 in use) dh_install: usr/lib/libmsym.a exists in debian/tmp but is not installed to anywhere dh_install: usr/lib/cmake/libmsym/libmsymTargets.cmake exists in debian/tmp but is not installed to anywhere dh_install: usr/lib/cmake/libmsym/libmsymTargets-none.cmake exists in debian/tmp but is not installed to anywhere dh_install: usr/lib/cmake/libmsym/libmsymConfig.cmake exists in debian/tmp but is not installed to anywhere dh_install: usr/lib/cmake/libmsym/libmsymConfigVersion.cmake exists in debian/tmp but is not installed to anywhere dh_install: usr/share/libavogadro/extensionScripts/example.py exists in debian/tmp but is not installed to anywhere make[1]: Leaving directory '/<>' dh_installdocs -O--parallel dh_installchangelogs -O--parallel dh_installexamples -O--parallel dh_installexamples: Compatibility levels before 9 are deprecated (level 7 in use) dh_installman -O--parallel debian/rules override_dh_python2 make[1]: Entering directory '/<>' dh_python2 -ppython-avogadro W: dh_python2:479: Please add dh-python package to Build-Depends W: dh_python2:433: public extension linked with libpython2.7: Avogadro.so dh_numpy -ppython-avogadro dh_sip make[1]: Leaving directory '/<>' dh_installmenu -O--parallel dh_installmenu: Compatibility levels before 9 are deprecated (level 7 in use) dh_perl -O--parallel dh_link -O--parallel dh_strip_nondeterminism -O--parallel dh_compress -O--parallel dh_fixperms -O--parallel dh_strip -O--parallel dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: avogadro libavogadro1 libavogadro-dev python-avogadro dh_strip debug symbol extraction: packages to act on: avogadro libavogadro1 libavogadro-dev python-avogadro dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package avogadro: unused substitution variable ${sip:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libavogadro1: unused substitution variable ${sip:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol libavogadro-dev has no unstripped objects, ignoring find: ‘/<>/debian/libavogadro-dev-dbgsym’: No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /<>/debian/libavogadro-dev-dbgsym and no dbgdepends, ignoring /usr/bin/pkg_create_dbgsym: ignoring python* package: python-avogadro dh_strip.pkg-create-dbgsym: Compatibility levels before 9 are deprecated (level 7 in use) dh_makeshlibs -O--parallel dh_shlibdeps -O--parallel dh_installdeb -O--parallel dh_installdeb: Compatibility levels before 9 are deprecated (level 7 in use) dh_gencontrol -O--parallel dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package avogadro: unused substitution variable ${sip:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package avogadro-data: unused substitution variable ${sip:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libavogadro1: unused substitution variable ${sip:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libavogadro-dev: unused substitution variable ${sip:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: avogadro libavogadro1 libavogadro-dev python-avogadro dh_gencontrol debug symbol wrapper: packages to act on: avogadro libavogadro1 libavogadro-dev python-avogadro dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package avogadro (pkgdir debian/avogadro, ddeb package dir debian/avogadro-dbgsym) dh_gencontrol debug symbol wrapper: building avogadro-dbgsym_1.2.0-1build1_amd64.ddeb dpkg-deb: building package 'avogadro-dbgsym' in '../avogadro-dbgsym_1.2.0-1build1_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile avogadro-dbgsym_1.2.0-1build1_amd64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: processing package libavogadro1 (pkgdir debian/libavogadro1, ddeb package dir debian/libavogadro1-dbgsym) dh_gencontrol debug symbol wrapper: building libavogadro1-dbgsym_1.2.0-1build1_amd64.ddeb dpkg-deb: building package 'libavogadro1-dbgsym' in '../libavogadro1-dbgsym_1.2.0-1build1_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile libavogadro1-dbgsym_1.2.0-1build1_amd64.ddeb libs extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: no debian/libavogadro-dev-dbgsym, skipping package libavogadro-dev dh_gencontrol debug symbol wrapper: no debian/python-avogadro-dbgsym, skipping package python-avogadro dh_md5sums -O--parallel dh_builddeb -O--parallel INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing avogadro (in debian/avogadro); do_strip: , oemstrip: pkgstriptranslations: processing avogadro-data (in debian/avogadro-data); do_strip: , oemstrip: pkgstriptranslations: processing libavogadro1 (in debian/libavogadro1); do_strip: , oemstrip: pkgstriptranslations: processing libavogadro-dev (in debian/libavogadro-dev); do_strip: , oemstrip: debian/avogadro/usr/share/applications/avogadro.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libavogadro-dev/DEBIAN/control, package libavogadro-dev, directory debian/libavogadro-dev pkgstripfiles: processing control file: debian/avogadro-data/DEBIAN/control, package avogadro-data, directory debian/avogadro-data INFO: pkgstripfiles: waiting for lock (libavogadro-dev) ... INFO: pkgstripfiles: waiting for lock (avogadro-data) ... pkgstripfiles: processing control file: debian/avogadro/DEBIAN/control, package avogadro, directory debian/avogadro Searching for duplicated docs in dependency libavogadro1... symlinking changelog.Debian.gz in avogadro to file in libavogadro1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package avogadro ... WARNING: optipng failed on usr/share/pixmaps/avogadro-icon.png, ignoring o pkgstripfiles: PNG optimization (1/0) for package avogadro took 0 s dpkg-deb: building package 'avogadro' in '../avogadro_1.2.0-1build1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libavogadro-dev) ... pkgstripfiles: Truncating usr/share/doc/avogadro-data/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package avogadro-data ... pkgstripfiles: No PNG files. dpkg-deb: building package 'avogadro-data' in '../avogadro-data_1.2.0-1build1_all.deb'. INFO: pkgstripfiles: waiting for lock (libavogadro-dev) ... INFO: pkgstriptranslations version 131 INFO: pkgstripfiles: waiting for lock (libavogadro-dev) ... pkgstriptranslations: processing python-avogadro (in debian/python-avogadro); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python-avogadro/DEBIAN/control, package python-avogadro, directory debian/python-avogadro INFO: pkgstripfiles: waiting for lock (python-avogadro) ... INFO: pkgstripfiles: waiting for lock (libavogadro-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (python-avogadro) ... pkgstripfiles: processing control file: debian/libavogadro1/DEBIAN/control, package libavogadro1, directory debian/libavogadro1 pkgstripfiles: Truncating usr/share/doc/libavogadro1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libavogadro1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libavogadro1' in '../libavogadro1_1.2.0-1build1_amd64.deb'. Searching for duplicated docs in dependency libavogadro1... symlinking changelog.Debian.gz in libavogadro-dev to file in libavogadro1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libavogadro-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libavogadro-dev' in '../libavogadro-dev_1.2.0-1build1_amd64.deb'. Searching for duplicated docs in dependency libavogadro1... symlinking changelog.Debian.gz in python-avogadro to file in libavogadro1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-avogadro ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-avogadro' in '../python-avogadro_1.2.0-1build1_amd64.deb'. dpkg-genchanges --build=any,all -mLaunchpad Build Daemon >../avogadro_1.2.0-1build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build avogadro-1.2.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20161107-0259 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ avogadro_1.2.0-1build1_amd64.changes: ------------------------------------- Format: 1.8 Date: Sun, 06 Nov 2016 21:18:17 -0500 Source: avogadro Binary: avogadro avogadro-data libavogadro1 libavogadro-dev python-avogadro Architecture: all amd64 Version: 1.2.0-1build1 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Jeremy Bicha Description: avogadro - Molecular Graphics and Modelling System avogadro-data - Molecular Graphics and Modelling System (Data Files) libavogadro-dev - Molecular Graphics and Modelling System (development files) libavogadro1 - Molecular Graphics and Modelling System (library) python-avogadro - Molecular Graphics and Modelling System (Python module) Changes: avogadro (1.2.0-1build1) zesty; urgency=medium . * No-change rebuild against latest glew Checksums-Sha1: 6fcd0f67c2159701a4b408a84810485433c2f11f 276606 avogadro-data_1.2.0-1build1_all.deb d2685a370aeac44cff4fb840c4300f6394adbd17 3090084 avogadro-dbgsym_1.2.0-1build1_amd64.ddeb e68993773308aa4ffc971124590d42044295ebcf 11105728 avogadro_1.2.0-1build1_amd64.deb 6e8aefdf22a2e337d21cb3bdaa358847ac6f8520 64656 libavogadro-dev_1.2.0-1build1_amd64.deb 11829f53939fb32d6bf244f5d389cff20aa92c18 35343792 libavogadro1-dbgsym_1.2.0-1build1_amd64.ddeb 8fba6aa2dd873b90187d85a372a323073a944f61 1652654 libavogadro1_1.2.0-1build1_amd64.deb a3060e6535cee8e3e0d898a9e927ff372b8e96c8 223194 python-avogadro_1.2.0-1build1_amd64.deb Checksums-Sha256: d12eb45991a9367a66ea8a26be6dbfd998f2ea1957597bfb43a85b9eec10ce69 276606 avogadro-data_1.2.0-1build1_all.deb 0fa6d811364a12d9e0c3cae8abe3bd39d6e429786cfd1bde7882ab39545b03e8 3090084 avogadro-dbgsym_1.2.0-1build1_amd64.ddeb a66855ebfd140bad9e56b6ce90ef2c6548d00f30c2567cebe104c066e7ad96ca 11105728 avogadro_1.2.0-1build1_amd64.deb eaa754cc1e4678f3c452026ad6eb47401390d5c1597a775d03353740fbcb9418 64656 libavogadro-dev_1.2.0-1build1_amd64.deb 759eb65194e5c37c45acb74b0b3f6fba7197e5baa1e8bc61b756655e0cef18cf 35343792 libavogadro1-dbgsym_1.2.0-1build1_amd64.ddeb 440eef3dc26a12b893f70824b171f1138108b4386eaff2f85c6f5579fa3a74c7 1652654 libavogadro1_1.2.0-1build1_amd64.deb 6a0e62532c5a4dc8791757fbc71831aa0b6ec6888c59abfb30e89e16eab9c864 223194 python-avogadro_1.2.0-1build1_amd64.deb Files: b5c3adaf63e2dcbb90d903ace7e1118b 276606 science optional avogadro-data_1.2.0-1build1_all.deb d8decb591a1c3289e1b8fc0e12c5e1b7 3090084 science extra avogadro-dbgsym_1.2.0-1build1_amd64.ddeb e394453a46c584be7bcb0625247e3c63 11105728 science optional avogadro_1.2.0-1build1_amd64.deb fbbde6f9ef757aeddfca0cdf28a94329 64656 libdevel extra libavogadro-dev_1.2.0-1build1_amd64.deb 4a75c886b92fe83b59dab8468d9925e3 35343792 libs extra libavogadro1-dbgsym_1.2.0-1build1_amd64.ddeb 5f54e314515740bb5a8ea630e916db9f 1652654 libs optional libavogadro1_1.2.0-1build1_amd64.deb 98d3d94bd47910fbd586eca7a5d80e38 223194 python extra python-avogadro_1.2.0-1build1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ avogadro-data_1.2.0-1build1_all.deb ----------------------------------- new debian package, version 2.0. size 276606 bytes: control archive=27302 bytes. 822 bytes, 19 lines control 83162 bytes, 957 lines md5sums Package: avogadro-data Source: avogadro Version: 1.2.0-1build1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 3323 Breaks: avogadro (<< 1.0.0-2), libavogadro0 (<< 1.0.0-2) Replaces: avogadro (<< 1.0.0-2), libavogadro0 (<< 1.0.0-2) Section: science Priority: optional Homepage: http://avogadro.sourceforge.net/ Description: Molecular Graphics and Modelling System (Data Files) Avogadro is a molecular graphics and modelling system targeted at molecules and biomolecules. It can visualize properties like molecular orbitals or electrostatic potentials and features an intuitive molecular builder. . This package contains data files like molecular builder fragments or OpenGL shaders. drwxr-xr-x root/root 0 2016-11-07 02:18 ./ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/share/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/share/avogadro/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/share/avogadro/builder/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/share/avogadro/builder/amino/ -rw-r--r-- root/root 685 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-ala.zmat -rw-r--r-- root/root 1566 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-arg.zmat -rw-r--r-- root/root 962 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-asn.zmat -rw-r--r-- root/root 891 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-asp.zmat -rw-r--r-- root/root 753 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-cys.zmat -rw-r--r-- root/root 1168 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-gln.zmat -rw-r--r-- root/root 1097 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-glu.zmat -rw-r--r-- root/root 1167 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-his.zmat -rw-r--r-- root/root 1314 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-ile.zmat -rw-r--r-- root/root 1311 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-leu.zmat -rw-r--r-- root/root 1440 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-lys.zmat -rw-r--r-- root/root 1165 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-met.zmat -rw-r--r-- root/root 1373 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-phe.zmat -rw-r--r-- root/root 959 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-pro.zmat -rw-r--r-- root/root 753 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-ser.zmat -rw-r--r-- root/root 964 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-thr.zmat -rw-r--r-- root/root 1650 2016-06-03 19:31 ./usr/share/avogadro/builder/amino/d-trp.zmat -rw-r--r-- root/root 1441 2016-06-03 19:31 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Section: science Priority: optional Homepage: http://avogadro.sourceforge.net/ Description: Molecular Graphics and Modelling System Avogadro is a molecular graphics and modelling system targeted at molecules and biomolecules. It can visualize properties like molecular orbitals or electrostatic potentials and features an intuitive molecular builder. . Features include: * Molecular modeller with automatic force-field based geometry optimization * Molecular Mechanics including constraints and conformer searches * Visualization of molecular orbitals and general isosurfaces * Visualization of vibrations and plotting of vibrational spectra * Support for crystallographic unit cells * Input generation for the Gaussian, GAMESS and MOLPRO quantum chemistry packages * Flexible plugin architecture and Python scripting . 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Description: Molecular Graphics and Modelling System (development files) Avogadro is a molecular graphics and modelling system targeted at small to medium molecules. It can visualize properties like molecular orbitals or electrostatic potentials and features an intuitive molecular builder. . 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-rw-r--r-- root/root 823 2016-11-07 02:18 ./usr/share/qt4/mkspecs/avogadro.prf libavogadro1_1.2.0-1build1_amd64.deb ------------------------------------ new debian package, version 2.0. size 1652654 bytes: control archive=2829 bytes. 1089 bytes, 20 lines control 5186 bytes, 63 lines md5sums 63 bytes, 2 lines shlibs 60 bytes, 2 lines triggers Package: libavogadro1 Source: avogadro Version: 1.2.0-1build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 6984 Depends: libboost-python1.62.0, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libgl1-mesa-glx | libgl1, libglew2.0 (>= 1.12.0), libglu1-mesa | libglu1, libopenbabel4v5, libpython2.7 (>= 2.7), libqt4-network (>= 4:4.5.3), libqt4-opengl (>= 4:4.5.3), libqtcore4 (>= 4:4.8.0), libqtgui4 (>= 4:4.8.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Recommends: avogadro-data (>= 1.0.0-2), python-avogadro Conflicts: libavogadro0 Replaces: libavogadro0 Section: libs Priority: optional Homepage: http://avogadro.sourceforge.net/ Description: Molecular Graphics and Modelling System (library) Avogadro is a molecular graphics and modelling system targeted at small to medium molecules. It can visualize properties like molecular orbitals or electrostatic potentials and features an intuitive molecular builder. . This package provides the shared library. drwxr-xr-x root/root 0 2016-11-07 02:18 ./ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/lib/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/lib/avogadro/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/lib/avogadro/1_2/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/lib/avogadro/1_2/colors/ -rw-r--r-- root/root 18824 2016-11-07 02:18 ./usr/lib/avogadro/1_2/colors/atomindexcolor.so -rw-r--r-- root/root 18832 2016-11-07 02:18 ./usr/lib/avogadro/1_2/colors/chargecolor.so -rw-r--r-- root/root 18960 2016-11-07 02:18 ./usr/lib/avogadro/1_2/colors/customcolor.so -rw-r--r-- root/root 18840 2016-11-07 02:18 ./usr/lib/avogadro/1_2/colors/distancecolor.so -rw-r--r-- root/root 35448 2016-11-07 02:18 ./usr/lib/avogadro/1_2/colors/residuecolor.so -rw-r--r-- root/root 27336 2016-11-07 02:18 ./usr/lib/avogadro/1_2/colors/smartscolor.so drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/lib/avogadro/1_2/engines/ -rw-r--r-- 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root/root 39784 2016-11-07 02:18 ./usr/lib/avogadro/1_2/engines/sphereengine.so -rw-r--r-- root/root 39656 2016-11-07 02:18 ./usr/lib/avogadro/1_2/engines/stickengine.so -rw-r--r-- root/root 60624 2016-11-07 02:18 ./usr/lib/avogadro/1_2/engines/surfaceengine.so -rw-r--r-- root/root 39760 2016-11-07 02:18 ./usr/lib/avogadro/1_2/engines/wireengine.so drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/ -rw-r--r-- root/root 114576 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/animationextension.so -rw-r--r-- root/root 81464 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/cartesianextension.so -rw-r--r-- root/root 626184 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/crystallographyextension.so -rw-r--r-- root/root 48136 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/fileimportextension.so -rw-r--r-- root/root 143520 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/forcefieldextension.so -rw-r--r-- root/root 357104 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/gamessextension.so -rw-r--r-- root/root 105904 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/gl2psextension.so -rw-r--r-- root/root 23120 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/h2methylextension.so -rw-r--r-- root/root 27280 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/hydrogensextension.so -rw-r--r-- root/root 573888 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/inputfileextension.so -rw-r--r-- root/root 60752 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/insertdnaextension.so -rw-r--r-- root/root 77432 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/insertfragmentextension.so -rw-r--r-- root/root 89800 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/insertpeptideextension.so -rw-r--r-- root/root 23120 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/invertchiralextension.so -rw-r--r-- root/root 52272 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/molecularpropextension.so -rw-r--r-- root/root 39928 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/networkfetchextension.so -rw-r--r-- root/root 172584 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/orbitalextension.so -rw-r--r-- root/root 271056 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/orcaextension.so -rw-r--r-- root/root 93632 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/povrayextension.so -rw-r--r-- root/root 114184 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/propextension.so -rw-r--r-- root/root 56368 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/pythonterminal.so -rw-r--r-- root/root 35592 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/selectextension.so -rw-r--r-- root/root 93392 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/shaderextension.so -rw-r--r-- root/root 287504 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/spectraextension.so -rw-r--r-- root/root 52384 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/supercellextension.so -rw-r--r-- root/root 131184 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/surfaceextension.so -rw-r--r-- root/root 144832 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/swcntbuilderextension.so -rw-r--r-- root/root 188568 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/symmetryextension.so -rw-r--r-- root/root 77400 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/vibrationextension.so -rw-r--r-- root/root 73024 2016-11-07 02:18 ./usr/lib/avogadro/1_2/extensions/vrmlextension.so drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/lib/avogadro/1_2/tools/ -rw-r--r-- root/root 35664 2016-11-07 02:18 ./usr/lib/avogadro/1_2/tools/aligntool.so -rw-r--r-- root/root 56744 2016-11-07 02:18 ./usr/lib/avogadro/1_2/tools/autoopttool.so -rw-r--r-- root/root 31488 2016-11-07 02:18 ./usr/lib/avogadro/1_2/tools/autorotatetool.so -rw-r--r-- root/root 81056 2016-11-07 02:18 ./usr/lib/avogadro/1_2/tools/bondcentrictool.so -rw-r--r-- root/root 43792 2016-11-07 02:18 ./usr/lib/avogadro/1_2/tools/clickmeasuretool.so -rw-r--r-- root/root 85344 2016-11-07 02:18 ./usr/lib/avogadro/1_2/tools/drawtool.so -rw-r--r-- root/root 76984 2016-11-07 02:18 ./usr/lib/avogadro/1_2/tools/manipulatetool.so -rw-r--r-- root/root 56600 2016-11-07 02:18 ./usr/lib/avogadro/1_2/tools/selectrotatetool.so lrwxrwxrwx root/root 0 2016-11-07 02:18 ./usr/lib/libavogadro.so.1 -> libavogadro.so.1.2.0 -rw-r--r-- root/root 1093920 2016-11-07 02:18 ./usr/lib/libavogadro.so.1.2.0 lrwxrwxrwx root/root 0 2016-11-07 02:18 ./usr/lib/libavogadro_OpenQube.so.0 -> libavogadro_OpenQube.so.0.1.0 -rw-r--r-- root/root 446008 2016-11-07 02:18 ./usr/lib/libavogadro_OpenQube.so.0.1.0 drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/share/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/share/doc/libavogadro1/ -rw-r--r-- root/root 1107 2016-11-07 02:18 ./usr/share/doc/libavogadro1/changelog.Debian.gz -rw-r--r-- root/root 8218 2015-09-26 19:17 ./usr/share/doc/libavogadro1/copyright python-avogadro_1.2.0-1build1_amd64.deb --------------------------------------- new debian package, version 2.0. size 223194 bytes: control archive=902 bytes. 1107 bytes, 21 lines control 235 bytes, 3 lines md5sums Package: python-avogadro Source: avogadro Version: 1.2.0-1build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1236 Depends: python-numpy (>= 1:1.10.0~b1), python-qt4, python-sip, python (<< 2.8), python (>= 2.7), python-numpy-abi9, libavogadro1, libboost-python1.62.0, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libpython2.7 (>= 2.7), libqt4-opengl (>= 4:4.5.3), libqtcore4 (>= 4:4.7.0~beta1), libqtgui4 (>= 4:4.5.3), libstdc++6 (>= 5), sip-api-11.3 Breaks: libavogadro0 (<< 0.9.8) Replaces: libavogadro0 (<< 0.9.8) Provides: python2.7-avogadro Section: python Priority: extra Homepage: http://avogadro.sourceforge.net/ Description: Molecular Graphics and Modelling System (Python module) Avogadro is a molecular graphics and modelling system targeted at small to medium molecules. It can visualize properties like molecular orbitals or electrostatic potentials and features an intuitive molecular builder. . This package provides the Python module. Python-Version: 2.7 drwxr-xr-x root/root 0 2016-11-07 02:18 ./ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/lib/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/lib/python2.7/dist-packages/ -rw-r--r-- root/root 1231992 2016-11-07 02:18 ./usr/lib/python2.7/dist-packages/Avogadro.so drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/share/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/share/doc/python-avogadro/ lrwxrwxrwx root/root 0 2016-11-07 02:18 ./usr/share/doc/python-avogadro/changelog.Debian.gz -> ../libavogadro1/changelog.Debian.gz -rw-r--r-- root/root 8218 2015-09-26 19:17 ./usr/share/doc/python-avogadro/copyright drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/share/libavogadro/ drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/share/libavogadro/engineScripts/ -rw-r--r-- root/root 1905 2016-06-03 19:31 ./usr/share/libavogadro/engineScripts/wireframe.py drwxr-xr-x root/root 0 2016-11-07 02:18 ./usr/share/libavogadro/extensionScripts/ +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 1280968 Build-Time: 859 Distribution: zesty-proposed Host Architecture: amd64 Install-Time: 83 Job: avogadro_1.2.0-1build1.dsc Machine Architecture: amd64 Package: avogadro Package-Time: 944 Source-Version: 1.2.0-1build1 Space: 1280968 Status: successful Version: 1.2.0-1build1 -------------------------------------------------------------------------------- Finished at 20161107-0259 Build needed 00:15:44, 1280968k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11155837'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11155837/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11155837'] Unmounting chroot for build PACKAGEBUILD-11155837... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11155837'] Removing build PACKAGEBUILD-11155837