baitfisher 1.0+dfsg-2 source package in Ubuntu


baitfisher (1.0+dfsg-2) unstable; urgency=medium

  * Team upload.
  * Fix homepage URL (Thanks for the patch to Edward Betts <>)
    Closes: #874352
  * cme fix dpkg-control
  * Standards-Version: 4.1.0 (no changes needed)
  * debhelper 10
  * Unique license in copyright
  * hardening=+all

 -- Andreas Tille <email address hidden>  Wed, 06 Sep 2017 11:54:00 +0200

Upload details

Uploaded by:
Debian Med on 2017-09-06
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Cosmic release on 2018-05-01 universe misc
Bionic release on 2017-11-02 universe misc


File Size SHA-256 Checksum
baitfisher_1.0+dfsg-2.dsc 1.9 KiB 454fbea6c99f1738a1f77cf76f7cb1e9959feac9cc06cbab0fcc0211a58cdcdd
baitfisher_1.0+dfsg.orig.tar.xz 217.6 KiB 3d826dca179e46562cb7b51e72ff583f95370f7b6331ab895d3c9a13d172cb69
baitfisher_1.0+dfsg-2.debian.tar.xz 3.9 KiB 2e9f06c6e05102866c52aeded9799e2d1bcb09d04a0a72b310fd769a9393caf3

Available diffs

No changes file available.

Binary packages built by this source

baitfisher: software package for designing hybrid enrichment probes

 The BaitFisher package consists of two programs: BaitFisher and BaitFilter.
 BaitFisher was been designed to construct hybrid enrichment baits from
 multiple sequence alignments (MSAs) or annotated features in MSAs. The main
 goal of BaitFisher is to avoid redundancy in the construction of baits by
 designing fewer baits in conserved regions of the MSAs and designing more baits
 in variable regions. This makes use of the fact that hybrid enrichment baits
 can differ to some extends from the target region, which they should capture
 in the enrichment procedure.
 By specifying the allowed distance between baits and the sequences in the MSAs
 the user can control the allowed bait-to-target distance and the degree of
 reduction in the number of baits that are designed.
 See the BaitFisher paper for details.
 BaitFilter was designed (i) to determine whether baits bind unspecifically to
 a reference genome, (ii) to filter baits that only have partial length matches
 to a reference genome, (iii) to determine the optimal bait region in a MSA and
 to convert baits to a format that can be uploaded at a bait constructing
 company. The optimal bait region can be the most conserved region in the MSA
 or the region with the highest number of sequences without gaps or ambiguous

baitfisher-dbgsym: debug symbols for baitfisher