baitfisher 1.2.7+git20180107.e92dbf2+dfsg-1 source package in Ubuntu
Changelog
baitfisher (1.2.7+git20180107.e92dbf2+dfsg-1) unstable; urgency=medium
* Team upload.
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added registries
- yamllint cleanliness
[ Andreas Tille ]
* New upstream version
Closes: #852839
* Enable hardening (thanks for the patch to Juhani Numminen
<email address hidden>)
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Fix interpreter path for bash in examples
* Git mode in watch file since upstream does not set release tags
* Overhaul Files-Excluded: Doc now comes with source, remove code copy
of libtclap-dev
* Build-Depends: libtclap-dev
* Fix examples
* Install doc
-- Andreas Tille <email address hidden> Mon, 24 Sep 2018 14:45:13 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| baitfisher_1.2.7+git20180107.e92dbf2+dfsg-1.dsc | 2.1 KiB | 049823a202e5b0e5d04df0446720ad47ccde4997e9dd9d82d3357cb5488e4395 |
| baitfisher_1.2.7+git20180107.e92dbf2+dfsg.orig.tar.xz | 3.3 MiB | fc729bdee85642f10d057e08d19174be5a40f8e993f5827b4c5bb11c3f964181 |
| baitfisher_1.2.7+git20180107.e92dbf2+dfsg-1.debian.tar.xz | 4.0 KiB | e139b1a4e131b58085506d1ba7415fff8811e81a2cde0fd735c830ba530724d5 |
Available diffs
No changes file available.
Binary packages built by this source
- baitfisher: software package for designing hybrid enrichment probes
The BaitFisher package consists of two programs: BaitFisher and BaitFilter.
.
BaitFisher was been designed to construct hybrid enrichment baits from
multiple sequence alignments (MSAs) or annotated features in MSAs. The main
goal of BaitFisher is to avoid redundancy in the construction of baits by
designing fewer baits in conserved regions of the MSAs and designing more baits
in variable regions. This makes use of the fact that hybrid enrichment baits
can differ to some extends from the target region, which they should capture
in the enrichment procedure.
By specifying the allowed distance between baits and the sequences in the MSAs
the user can control the allowed bait-to-target distance and the degree of
reduction in the number of baits that are designed.
See the BaitFisher paper for details.
.
BaitFilter was designed (i) to determine whether baits bind unspecifically to
a reference genome, (ii) to filter baits that only have partial length matches
to a reference genome, (iii) to determine the optimal bait region in a MSA and
to convert baits to a format that can be uploaded at a bait constructing
company. The optimal bait region can be the most conserved region in the MSA
or the region with the highest number of sequences without gaps or ambiguous
nucleotides.
- baitfisher-dbgsym: No summary available for baitfisher-dbgsym in ubuntu disco.
No description available for baitfisher-dbgsym in ubuntu disco.
