https://launchpad.net/ubuntu/+source/bali-phy/3.0.3+dfsg-1/+build/14837890 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-s390x-001 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:33:03 UTC 2018 s390x Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 May 03:06:46 ntpdate[1758]: adjust time server 10.211.37.1 offset -0.001947 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14837890 /home/buildd/filecache-default/17124f3eec304530bbb077109f97da7d4ad52147 Creating target for build PACKAGEBUILD-14837890 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14837890 Starting target for build PACKAGEBUILD-14837890 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14837890 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14837890 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14837890 Updating target for build PACKAGEBUILD-14837890 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x Packages [942 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe s390x Packages [8171 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4941 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x Packages [64.4 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [41.2 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x Packages [447 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [281 kB] Fetched 15.9 MB in 3s (4775 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils build-essential cpp cpp-7 dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libargon2-0 libasan4 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libitm1 libmount1 libncurses5 libncursesw5 libp11-kit0 libprocps6 libreadline7 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libtinfo5 libubsan0 libuuid1 mount ncurses-base ncurses-bin pinentry-curses procps readline-common tar tzdata util-linux 62 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 29.9 MB of archives. After this operation, 1370 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main s390x base-files s390x 10.1ubuntu3 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main s390x libtinfo6 s390x 6.1+20180210-2ubuntu2 [80.5 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main s390x bash s390x 4.4.18-2ubuntu2 [583 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x bsdutils s390x 1:2.31.1-0.4ubuntu4 [58.0 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x tar s390x 1.30+dfsg-1 [229 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x dpkg s390x 1.19.0.5ubuntu3 [1121 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libext2fs2 s390x 1.44.1-2 [154 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x e2fsprogs s390x 1.44.1-2 [369 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main s390x ncurses-bin s390x 6.1+20180210-2ubuntu2 [159 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main s390x libncursesw6 s390x 6.1+20180210-2ubuntu2 [120 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libuuid1 s390x 2.31.1-0.4ubuntu4 [20.0 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libblkid1 s390x 2.31.1-0.4ubuntu4 [117 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libfdisk1 s390x 2.31.1-0.4ubuntu4 [152 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libmount1 s390x 2.31.1-0.4ubuntu4 [126 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libsmartcols1 s390x 2.31.1-0.4ubuntu4 [79.2 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x fdisk s390x 2.31.1-0.4ubuntu4 [103 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x util-linux s390x 2.31.1-0.4ubuntu4 [867 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main s390x base-passwd s390x 3.5.45 [46.4 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main s390x ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x mount s390x 2.31.1-0.4ubuntu4 [103 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main s390x libgomp1 s390x 8.1.0-1ubuntu2 [69.8 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main s390x libitm1 s390x 8.1.0-1ubuntu2 [26.9 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc-8-base s390x 8.1.0-1ubuntu2 [18.1 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main s390x libstdc++6 s390x 8.1.0-1ubuntu2 [398 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main s390x libcc1-0 s390x 8.1.0-1ubuntu2 [37.3 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main s390x libatomic1 s390x 8.1.0-1ubuntu2 [8428 B] Get:27 http://ftpmaster.internal/ubuntu cosmic/main s390x libgcc1 s390x 1:8.1.0-1ubuntu2 [25.1 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main s390x libcap-ng0 s390x 0.7.9-1 [11.0 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libcom-err2 s390x 1.44.1-2 [9288 B] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libgpg-error0 s390x 1.31-1 [53.1 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libss2 s390x 1.44.1-2 [10.7 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main s390x libncursesw5 s390x 6.1+20180210-2ubuntu2 [108 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main s390x libncurses5 s390x 6.1+20180210-2ubuntu2 [89.0 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main s390x libtinfo5 s390x 6.1+20180210-2ubuntu2 [76.2 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libgmp10 s390x 2:6.1.2+dfsg-3 [225 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libp11-kit0 s390x 0.23.10-2 [188 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main s390x libprocps6 s390x 2:3.3.12-3ubuntu2 [30.1 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main s390x libncurses6 s390x 6.1+20180210-2ubuntu2 [94.3 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main s390x procps s390x 2:3.3.12-3ubuntu2 [215 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libargon2-0 s390x 0~20161029-2 [35.6 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x readline-common all 7.0-4ubuntu1 [52.3 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libreadline7 s390x 7.0-4ubuntu1 [117 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libsqlite3-0 s390x 3.23.1-1 [468 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x tzdata all 2018e-1 [188 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main s390x libbinutils s390x 2.30-17ubuntu1 [305 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils-common s390x 2.30-17ubuntu1 [193 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils s390x 2.30-17ubuntu1 [3324 B] Get:48 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils-s390x-linux-gnu s390x 2.30-17ubuntu1 [1722 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main s390x libasan4 s390x 7.3.0-17ubuntu1 [318 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main s390x libubsan0 s390x 7.3.0-17ubuntu1 [120 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main s390x g++-7 s390x 7.3.0-17ubuntu1 [5989 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc-7 s390x 7.3.0-17ubuntu1 [5886 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main s390x libstdc++-7-dev s390x 7.3.0-17ubuntu1 [1454 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main s390x libgcc-7-dev s390x 7.3.0-17ubuntu1 [641 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main s390x cpp-7 s390x 7.3.0-17ubuntu1 [5186 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc-7-base s390x 7.3.0-17ubuntu1 [18.9 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x cpp s390x 4:7.3.0-3ubuntu3 [27.5 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gcc s390x 4:7.3.0-3ubuntu3 [5204 B] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x g++ s390x 4:7.3.0-3ubuntu3 [1592 B] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x build-essential s390x 12.5ubuntu2 [4740 B] Get:63 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x e2fslibs s390x 1.44.1-2 [2704 B] Get:64 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libcomerr2 s390x 1.44.1-2 [2692 B] Get:65 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x pinentry-curses s390x 1.1.0-1build1 [34.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.9 MB in 0s (69.8 MB/s) (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu3_s390x.deb ... Unpacking base-files (10.1ubuntu3) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu3) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:s390x. (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libtinfo6:s390x (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:s390x (6.1+20180210-2ubuntu2) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_s390x.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_s390x.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-1_s390x.deb ... Unpacking tar (1.30+dfsg-1) over (1.29b-2) ... Setting up tar (1.30+dfsg-1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_s390x.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.1-2_s390x.deb ... Unpacking libext2fs2:s390x (1.44.1-2) over (1.44.1-1) ... Setting up libext2fs2:s390x (1.44.1-2) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.1-2_s390x.deb ... Unpacking e2fsprogs (1.44.1-2) over (1.44.1-1) ... Setting up e2fsprogs (1.44.1-2) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking ncurses-bin (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-2ubuntu2) ... Selecting previously unselected package libncursesw6:s390x. (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libncursesw6:s390x (6.1+20180210-2ubuntu2) ... Setting up libncursesw6:s390x (6.1+20180210-2ubuntu2) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libuuid1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libuuid1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libuuid1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libblkid1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libblkid1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libblkid1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libfdisk1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libfdisk1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libmount1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libmount1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libmount1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libsmartcols1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libsmartcols1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../fdisk_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking fdisk (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up fdisk (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../util-linux_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking util-linux (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up util-linux (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) 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Unpacking libncursesw5:s390x (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Preparing to unpack .../libncurses5_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libncurses5:s390x (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libtinfo5:s390x (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up libtinfo5:s390x (6.1+20180210-2ubuntu2) ... (Reading database ... 12397 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-3_s390x.deb ... Unpacking libgmp10:s390x (2:6.1.2+dfsg-3) over (2:6.1.2+dfsg-2) ... Setting up libgmp10:s390x (2:6.1.2+dfsg-3) ... (Reading database ... 12397 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.10-2_s390x.deb ... Unpacking libp11-kit0:s390x (0.23.10-2) over (0.23.9-2) ... Setting up libp11-kit0:s390x (0.23.10-2) ... (Reading database ... 12397 files and directories currently installed.) 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Setting up libncurses5:s390x (6.1+20180210-2ubuntu2) ... Setting up libgomp1:s390x (8.1.0-1ubuntu2) ... Setting up libatomic1:s390x (8.1.0-1ubuntu2) ... Setting up readline-common (7.0-4ubuntu1) ... Setting up libcc1-0:s390x (8.1.0-1ubuntu2) ... Setting up e2fslibs:s390x (1.44.1-2) ... Setting up libncursesw5:s390x (6.1+20180210-2ubuntu2) ... Setting up libreadline7:s390x (7.0-4ubuntu1) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat May 5 03:07:01 UTC 2018. Universal Time is now: Sat May 5 03:07:01 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up mount (2.31.1-0.4ubuntu4) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up libprocps6:s390x (2:3.3.12-3ubuntu2) ... Setting up libargon2-0:s390x (0~20161029-2) ... Setting up gcc-7-base:s390x (7.3.0-17ubuntu1) ... Setting up binutils-common:s390x (2.30-17ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libsqlite3-0:s390x (3.23.1-1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libcomerr2:s390x (1.44.1-2) ... Setting up libncurses6:s390x (6.1+20180210-2ubuntu2) ... Setting up libitm1:s390x (8.1.0-1ubuntu2) ... Setting up libasan4:s390x (7.3.0-17ubuntu1) ... Setting up libbinutils:s390x (2.30-17ubuntu1) ... Setting up libubsan0:s390x (7.3.0-17ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.30-17ubuntu1) ... Setting up libgcc-7-dev:s390x (7.3.0-17ubuntu1) ... Setting up cpp-7 (7.3.0-17ubuntu1) ... Setting up procps (2:3.3.12-3ubuntu2) ... Setting up libstdc++-7-dev:s390x (7.3.0-17ubuntu1) ... Processing triggers for systemd (237-3ubuntu10) ... Setting up binutils (2.30-17ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up gcc-7 (7.3.0-17ubuntu1) ... Setting up g++-7 (7.3.0-17ubuntu1) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14837890 s390x cosmic-proposed -c chroot:build-PACKAGEBUILD-14837890 --arch=s390x --dist=cosmic-proposed --nolog bali-phy_3.0.3+dfsg-1.dsc Initiating build PACKAGEBUILD-14837890 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:33:03 UTC 2018 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-001.buildd +==============================================================================+ | bali-phy 3.0.3+dfsg-1 (s390x) 05 May 2018 03:07 | +==============================================================================+ Package: bali-phy Version: 3.0.3+dfsg-1 Source Version: 3.0.3+dfsg-1 Distribution: cosmic-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/bali-phy-arCWAv/bali-phy-3.0.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/bali-phy-arCWAv' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14837890/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- bali-phy_3.0.3+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-av0Q4X/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-av0Q4X/apt_archive ./ InRelease Get:2 copy:/<>/resolver-av0Q4X/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-av0Q4X/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-av0Q4X/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-av0Q4X/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-av0Q4X/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12406 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11), meson (>= 0.45), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev Filtered Build-Depends: debhelper (>= 11), meson (>= 0.45), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev dpkg-deb: building package 'sbuild-build-depends-bali-phy-dummy' in '/<>/resolver-utx52B/apt_archive/sbuild-build-depends-bali-phy-dummy.deb'. Ign:1 copy:/<>/resolver-utx52B/apt_archive ./ InRelease Get:2 copy:/<>/resolver-utx52B/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-utx52B/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-utx52B/apt_archive ./ Sources [293 B] Get:5 copy:/<>/resolver-utx52B/apt_archive ./ Packages [612 B] Fetched 3024 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install bali-phy build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-chrono-dev libboost-chrono1.65-dev libboost-chrono1.65.1 libboost-dev libboost-filesystem-dev libboost-filesystem1.65-dev libboost-filesystem1.65.1 libboost-program-options-dev libboost-program-options1.65-dev libboost-program-options1.65.1 libboost-random-dev libboost-random1.65-dev libboost-random1.65.1 libboost-system-dev libboost-system1.65-dev libboost-system1.65.1 libboost1.65-dev libbsd0 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libice-dev libice6 libicu60 liblua5.1-0 liblzo2-2 libmagic-mgc libmagic1 libmpdec2 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libpthread-stubs0-dev libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libsm-dev libsm6 libtimedate-perl libtool libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2 libxrender-dev libxrender1 libyaml-0-2 m4 man-db meson mime-support ninja-build nlohmann-json-dev pandoc pandoc-data pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal ucf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.65-doc libboost-atomic1.65-dev libboost-container1.65-dev libboost-date-time1.65-dev libboost-exception1.65-dev libboost-graph1.65-dev libboost-graph-parallel1.65-dev libboost-iostreams1.65-dev libboost-locale1.65-dev libboost-log1.65-dev libboost-math1.65-dev libboost-mpi1.65-dev libboost-mpi-python1.65-dev libboost-numpy1.65-dev libboost-python1.65-dev libboost-regex1.65-dev libboost-serialization1.65-dev libboost-signals1.65-dev libboost-stacktrace1.65-dev libboost-test1.65-dev libboost-thread1.65-dev libboost-timer1.65-dev libboost-type-erasure1.65-dev libboost-wave1.65-dev libboost1.65-tools-dev libmpfrc++-dev libntl-dev libcairo2-doc libeigen3-doc libmrpt-dev libglib2.0-doc libice-doc libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libxcb-doc libxext-doc m4-doc apparmor less www-browser texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf libmail-box-perl python3-doc python3-tk python3-venv python3.6-venv python3.6-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl shared-mime-info xdg-user-dirs libpng-tools libltdl-dev libx11-doc libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-chrono-dev libboost-chrono1.65-dev libboost-chrono1.65.1 libboost-dev libboost-filesystem-dev libboost-filesystem1.65-dev libboost-filesystem1.65.1 libboost-program-options-dev libboost-program-options1.65-dev libboost-program-options1.65.1 libboost-random-dev libboost-random1.65-dev libboost-random1.65.1 libboost-system-dev libboost-system1.65-dev libboost-system1.65.1 libboost1.65-dev libbsd0 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libice-dev libice6 libicu60 liblua5.1-0 liblzo2-2 libmagic-mgc libmagic1 libmpdec2 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libpthread-stubs0-dev libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libsm-dev libsm6 libtimedate-perl libtool libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2 libxrender-dev libxrender1 libyaml-0-2 m4 man-db meson mime-support ninja-build nlohmann-json-dev pandoc pandoc-data pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal sbuild-build-depends-bali-phy-dummy ucf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 122 newly installed, 0 to remove and 1 not upgraded. Need to get 56.1 MB of archives. After this operation, 409 MB of additional disk space will be used. Get:1 copy:/<>/resolver-utx52B/apt_archive ./ sbuild-build-depends-bali-phy-dummy 0.invalid.0 [940 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main s390x libpython3.6-minimal s390x 3.6.5-6ubuntu1 [528 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main s390x libexpat1 s390x 2.2.5-3 [79.3 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main s390x python3.6-minimal s390x 3.6.5-6ubuntu1 [1487 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x python3-minimal s390x 3.6.5-3 [23.8 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main s390x mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main s390x libmpdec2 s390x 2.4.2-1ubuntu1 [80.7 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main s390x libpython3.6-stdlib s390x 3.6.5-6ubuntu1 [1675 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main s390x python3.6 s390x 3.6.5-6ubuntu1 [186 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main s390x libpython3-stdlib s390x 3.6.5-3 [7276 B] Get:11 http://ftpmaster.internal/ubuntu cosmic/main s390x python3 s390x 3.6.5-3 [10.2 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main s390x libbsd0 s390x 0.8.7-1 [40.0 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main s390x groff-base s390x 1.22.3-10 [1174 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main s390x libpipeline1 s390x 1.5.0-1 [24.1 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main s390x man-db s390x 2.8.3-2 [1007 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libmagic-mgc s390x 1:5.33-2 [193 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libmagic1 s390x 1:5.33-2 [68.2 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x file s390x 1:5.33-2 [22.7 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main s390x libelf1 s390x 0.170-0.4 [42.6 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main s390x libglib2.0-0 s390x 2.56.1-2ubuntu1 [1077 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main s390x libglib2.0-data all 2.56.1-2ubuntu1 [4220 B] Get:23 http://ftpmaster.internal/ubuntu cosmic/main s390x libicu60 s390x 60.2-3ubuntu3 [7837 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main s390x libxml2 s390x 2.9.4+dfsg1-6.1ubuntu1 [587 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main s390x libyaml-0-2 s390x 0.1.7-2ubuntu3 [41.3 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main s390x ucf all 3.0038 [50.5 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main s390x gettext-base s390x 0.19.8.1-6build1 [48.2 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main s390x libxau6 s390x 1:1.0.8-1 [7420 B] Get:29 http://ftpmaster.internal/ubuntu cosmic/main s390x libxdmcp6 s390x 1:1.1.2-3 [10.7 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main s390x libxcb1 s390x 1.13-1 [43.6 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libx11-data all 2:1.6.5-1 [113 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libx11-6 s390x 2:1.6.5-1 [542 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main s390x libxext6 s390x 2:1.3.3-1 [27.8 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main s390x m4 s390x 1.4.18-1 [195 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main s390x autoconf all 2.69-11 [322 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main s390x automake all 1:1.15.1-3ubuntu2 [509 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main s390x autopoint all 0.19.8.1-6build1 [412 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libtool all 2.4.6-2.1 [195 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main s390x dh-autoreconf all 17 [15.8 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main s390x libarchive-zip-perl all 1.60-1 [83.9 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libfile-stripnondeterminism-perl all 0.041-1 [15.3 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main s390x libtimedate-perl all 2.3000-2 [37.5 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x dh-strip-nondeterminism all 0.041-1 [5188 B] Get:46 http://ftpmaster.internal/ubuntu cosmic/main s390x libcroco3 s390x 0.6.12-2 [74.2 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main s390x gettext s390x 0.19.8.1-6build1 [858 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main s390x po-debconf all 1.0.20 [232 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main s390x debhelper all 11.2.1ubuntu1 [906 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main s390x fonts-dejavu-core all 2.37-1 [1041 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main s390x fontconfig-config all 2.12.6-0ubuntu2 [55.8 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost1.65-dev s390x 1.65.1+dfsg-0ubuntu5 [7218 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost-system1.65.1 s390x 1.65.1+dfsg-0ubuntu5 [10.4 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost-chrono1.65.1 s390x 1.65.1+dfsg-0ubuntu5 [10.2 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost-chrono1.65-dev s390x 1.65.1+dfsg-0ubuntu5 [10.1 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/universe s390x libboost-chrono-dev s390x 1.65.1.0ubuntu1 [3544 B] Get:58 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost-dev s390x 1.65.1.0ubuntu1 [3128 B] Get:59 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost-filesystem1.65.1 s390x 1.65.1+dfsg-0ubuntu5 [37.3 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost-system1.65-dev s390x 1.65.1+dfsg-0ubuntu5 [11.4 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost-filesystem1.65-dev s390x 1.65.1+dfsg-0ubuntu5 [48.7 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost-filesystem-dev s390x 1.65.1.0ubuntu1 [2960 B] Get:63 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost-program-options1.65.1 s390x 1.65.1+dfsg-0ubuntu5 [125 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost-program-options1.65-dev s390x 1.65.1+dfsg-0ubuntu5 [150 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost-program-options-dev s390x 1.65.1.0ubuntu1 [2940 B] Get:66 http://ftpmaster.internal/ubuntu cosmic/universe s390x libboost-random1.65.1 s390x 1.65.1+dfsg-0ubuntu5 [12.5 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/universe s390x libboost-random1.65-dev s390x 1.65.1+dfsg-0ubuntu5 [12.1 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/universe s390x libboost-random-dev s390x 1.65.1.0ubuntu1 [2924 B] Get:69 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost-system-dev s390x 1.65.1.0ubuntu1 [3060 B] Get:70 http://ftpmaster.internal/ubuntu cosmic/main s390x libfreetype6 s390x 2.8.1-2ubuntu2 [314 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main s390x libfontconfig1 s390x 2.12.6-0ubuntu2 [132 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main s390x libpixman-1-0 s390x 0.34.0-2 [135 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main s390x libxcb-render0 s390x 1.13-1 [14.7 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main s390x libxcb-shm0 s390x 1.13-1 [5528 B] Get:75 http://ftpmaster.internal/ubuntu cosmic/main s390x libxrender1 s390x 1:0.9.10-1 [17.8 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libcairo2 s390x 1.15.10-3 [533 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libcairo-gobject2 s390x 1.15.10-3 [16.8 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main s390x liblzo2-2 s390x 2.08-1.2 [44.6 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libcairo-script-interpreter2 s390x 1.15.10-3 [50.3 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main s390x libexpat1-dev s390x 2.2.5-3 [224 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-0ubuntu2 [173 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main s390x libpng-dev s390x 1.6.34-1 [173 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main s390x libfreetype6-dev s390x 2.8.1-2ubuntu2 [2519 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main s390x pkg-config s390x 0.29.1-0ubuntu2 [44.0 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main s390x libfontconfig1-dev s390x 2.12.6-0ubuntu2 [685 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main s390x xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main s390x x11proto-dev all 2018.4-4 [251 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main s390x x11proto-core-dev all 2018.4-4 [2620 B] Get:89 http://ftpmaster.internal/ubuntu cosmic/main s390x libxau-dev s390x 1:1.0.8-1 [9352 B] Get:90 http://ftpmaster.internal/ubuntu cosmic/main s390x libxdmcp-dev s390x 1:1.1.2-3 [25.1 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main s390x xtrans-dev all 1.3.5-1 [70.5 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main s390x libpthread-stubs0-dev s390x 0.3-4 [3892 B] Get:93 http://ftpmaster.internal/ubuntu cosmic/main s390x libxcb1-dev s390x 1.13-1 [78.4 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libx11-dev s390x 2:1.6.5-1 [606 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main s390x libxrender-dev s390x 1:0.9.10-1 [24.1 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main s390x x11proto-xext-dev all 2018.4-4 [2620 B] Get:97 http://ftpmaster.internal/ubuntu cosmic/main s390x libxext-dev s390x 2:1.3.3-1 [81.1 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main s390x x11-common all 1:7.7+19ubuntu7 [22.0 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main s390x libice6 s390x 2:1.0.9-2 [36.9 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main s390x libsm6 s390x 2:1.2.2-1 [15.3 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main s390x libice-dev s390x 2:1.0.9-2 [44.3 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main s390x libsm-dev s390x 2:1.2.2-1 [16.5 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main s390x libpixman-1-dev s390x 0.34.0-2 [149 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main s390x libxcb-render0-dev s390x 1.13-1 [18.4 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main s390x libxcb-shm0-dev s390x 1.13-1 [6664 B] Get:106 http://ftpmaster.internal/ubuntu cosmic/main s390x libglib2.0-bin s390x 2.56.1-2ubuntu1 [64.3 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main s390x python3-lib2to3 all 3.6.5-3 [76.6 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main s390x python3-distutils all 3.6.5-3 [141 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main s390x libglib2.0-dev-bin s390x 2.56.1-2ubuntu1 [101 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main s390x libpcre16-3 s390x 2:8.39-9 [79.4 kB] Get:111 http://ftpmaster.internal/ubuntu cosmic/main s390x libpcre32-3 s390x 2:8.39-9 [73.8 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main s390x libpcrecpp0v5 s390x 2:8.39-9 [14.5 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/main s390x libpcre3-dev s390x 2:8.39-9 [373 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main s390x libglib2.0-dev s390x 2.56.1-2ubuntu1 [1322 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libcairo2-dev s390x 1.15.10-3 [576 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic/universe s390x liblua5.1-0 s390x 5.1.5-8.1build2 [93.6 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic/universe s390x ninja-build s390x 1.8.2-1 [89.6 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x meson all 0.46.0-1 [228 kB] Get:119 http://ftpmaster.internal/ubuntu cosmic/universe s390x nlohmann-json-dev all 2.1.1-1.1 [364 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic/universe s390x pandoc-data all 1.19.2.4~dfsg-1build4 [40.1 kB] Get:121 http://ftpmaster.internal/ubuntu cosmic/universe s390x pandoc s390x 1.19.2.4~dfsg-1build4 [15.1 MB] Get:122 http://ftpmaster.internal/ubuntu cosmic/universe s390x libeigen3-dev all 3.3.4-4 [810 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 56.1 MB in 1s (72.5 MB/s) Selecting previously unselected package libpython3.6-minimal:s390x. (Reading database ... 12406 files and directories currently installed.) Preparing to unpack .../0-libpython3.6-minimal_3.6.5-6ubuntu1_s390x.deb ... Unpacking libpython3.6-minimal:s390x (3.6.5-6ubuntu1) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../1-libexpat1_2.2.5-3_s390x.deb ... Unpacking libexpat1:s390x (2.2.5-3) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../2-python3.6-minimal_3.6.5-6ubuntu1_s390x.deb ... Unpacking python3.6-minimal (3.6.5-6ubuntu1) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../3-python3-minimal_3.6.5-3_s390x.deb ... Unpacking python3-minimal (3.6.5-3) ... Selecting previously unselected package mime-support. Preparing to unpack .../4-mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libmpdec2:s390x. Preparing to unpack .../5-libmpdec2_2.4.2-1ubuntu1_s390x.deb ... 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Setting up libxcb-shm0-dev:s390x (1.13-1) ... Setting up libxrender-dev:s390x (1:0.9.10-1) ... Setting up libboost-filesystem-dev:s390x (1.65.1.0ubuntu1) ... Setting up libglib2.0-dev:s390x (2.56.1-2ubuntu1) ... Setting up libxcb-render0-dev:s390x (1.13-1) ... Setting up libxext-dev:s390x (2:1.3.3-1) ... Setting up libcairo2:s390x (1.15.10-3) ... Setting up libcairo-script-interpreter2:s390x (1.15.10-3) ... Setting up libcairo-gobject2:s390x (1.15.10-3) ... Setting up libcairo2-dev:s390x (1.15.10-3) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up sbuild-build-depends-bali-phy-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Processing triggers for systemd (237-3ubuntu10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-122-generic s390x (s390x) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-17ubuntu1 gcc-7_7.3.0-17ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-17ubuntu1 libstdc++6_8.1.0-1ubuntu2 linux-libc-dev_4.15.0-20.21 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu3 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 binutils-s390x-linux-gnu_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-17ubuntu1 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 file_1:5.33-2 findutils_4.6.0+git+20170828-2 fontconfig-config_2.12.6-0ubuntu2 fonts-dejavu-core_2.37-1 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-17ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-17ubuntu1 gcc-7-base_7.3.0-17ubuntu1 gcc-8-base_8.1.0-1ubuntu2 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-17ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-1ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-17ubuntu1 libblkid1_2.31.1-0.4ubuntu4 libboost-chrono-dev_1.65.1.0ubuntu1 libboost-chrono1.65-dev_1.65.1+dfsg-0ubuntu5 libboost-chrono1.65.1_1.65.1+dfsg-0ubuntu5 libboost-dev_1.65.1.0ubuntu1 libboost-filesystem-dev_1.65.1.0ubuntu1 libboost-filesystem1.65-dev_1.65.1+dfsg-0ubuntu5 libboost-filesystem1.65.1_1.65.1+dfsg-0ubuntu5 libboost-program-options-dev_1.65.1.0ubuntu1 libboost-program-options1.65-dev_1.65.1+dfsg-0ubuntu5 libboost-program-options1.65.1_1.65.1+dfsg-0ubuntu5 libboost-random-dev_1.65.1.0ubuntu1 libboost-random1.65-dev_1.65.1+dfsg-0ubuntu5 libboost-random1.65.1_1.65.1+dfsg-0ubuntu5 libboost-system-dev_1.65.1.0ubuntu1 libboost-system1.65-dev_1.65.1+dfsg-0ubuntu5 libboost-system1.65.1_1.65.1+dfsg-0ubuntu5 libboost1.65-dev_1.65.1+dfsg-0ubuntu5 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcairo-gobject2_1.15.10-3 libcairo-script-interpreter2_1.15.10-3 libcairo2_1.15.10-3 libcairo2-dev_1.15.10-3 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-1ubuntu2 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libeigen3-dev_3.3.4-4 libelf1_0.170-0.4 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.1-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libfontconfig1_2.12.6-0ubuntu2 libfontconfig1-dev_2.12.6-0ubuntu2 libfreetype6_2.8.1-2ubuntu2 libfreetype6-dev_2.8.1-2ubuntu2 libgcc-7-dev_7.3.0-17ubuntu1 libgcc1_1:8.1.0-1ubuntu2 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libglib2.0-bin_2.56.1-2ubuntu1 libglib2.0-data_2.56.1-2ubuntu1 libglib2.0-dev_2.56.1-2ubuntu1 libglib2.0-dev-bin_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-1ubuntu2 libgpg-error0_1.31-1 libhogweed4_3.4-1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-1ubuntu2 libjson-c3_0.12.1-1.3 libkmod2_24-1ubuntu3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblua5.1-0_5.1.5-8.1build2 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpdec2_2.4.2-1ubuntu1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnpth0_1.5-3 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl5.26_5.26.1-6 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libpixman-1-dev_0.34.0-2 libpng-dev_1.6.34-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libpthread-stubs0-dev_0.3-4 libpython3-stdlib_3.6.5-3 libpython3.6-minimal_3.6.5-6ubuntu1 libpython3.6-stdlib_3.6.5-6ubuntu1 libreadline7_7.0-4ubuntu1 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-2 libslang2_2.3.1a-3ubuntu1 libsm-dev_2:1.2.2-1 libsm6_2:1.2.2-1 libsmartcols1_2.31.1-0.4ubuntu4 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-17ubuntu1 libstdc++6_8.1.0-1ubuntu2 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2.1 libubsan0_7.3.0-17ubuntu1 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.4ubuntu4 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libx11-dev_2:1.6.5-1 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb-render0_1.13-1 libxcb-render0-dev_1.13-1 libxcb-shm0_1.13-1 libxcb-shm0-dev_1.13-1 libxcb1_1.13-1 libxcb1-dev_1.13-1 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxml2_2.9.4+dfsg1-6.1ubuntu1 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libyaml-0-2_0.1.7-2ubuntu3 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-20.21 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 meson_0.46.0-1 mime-support_3.60ubuntu1 mount_2.31.1-0.4ubuntu4 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 ninja-build_1.8.2-1 nlohmann-json-dev_2.1.1-1.1 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 pandoc_1.19.2.4~dfsg-1build4 pandoc-data_1.19.2.4~dfsg-1build4 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.1-6 perl-base_5.26.1-6 perl-modules-5.26_5.26.1-6 pinentry-curses_1.1.0-1build1 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 python3_3.6.5-3 python3-distutils_3.6.5-3 python3-lib2to3_3.6.5-3 python3-minimal_3.6.5-3 python3.6_3.6.5-6ubuntu1 python3.6-minimal_3.6.5-6ubuntu1 readline-common_7.0-4ubuntu1 sbuild-build-depends-bali-phy-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-1 tzdata_2018e-1 ubuntu-keyring_2018.02.28 ucf_3.0038 util-linux_2.31.1-0.4ubuntu4 x11-common_1:7.7+19ubuntu7 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 x11proto-xext-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Apr 20 14:05:13 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bali-phy_3.0.3+dfsg-1.dsc dpkg-source: info: extracting bali-phy in bali-phy-3.0.3+dfsg dpkg-source: info: unpacking bali-phy_3.0.3+dfsg.orig.tar.xz dpkg-source: info: unpacking bali-phy_3.0.3+dfsg-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14837890 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14837890 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14837890 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package bali-phy dpkg-buildpackage: info: source version 3.0.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build bali-phy-3.0.3+dfsg dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules build-arch dh build-arch --buildsystem=meson dh_update_autotools_config -a -O--buildsystem=meson dh_autoreconf -a -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/bali-phy-3.0.3+dfsg' dh_auto_configure -- -Dextra-tools=false cd obj-s390x-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/s390x-linux-gnu --libexecdir=lib/s390x-linux-gnu -Dextra-tools=false The Meson build system Version: 0.46.0 Source dir: /<>/bali-phy-3.0.3+dfsg Build dir: /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu Build type: native build Project name: bali-phy Native C compiler: cc (gcc 7.3.0 "cc (Ubuntu 7.3.0-17ubuntu1) 7.3.0") Appending CFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Appending LDFLAGS from environment: '-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now' Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' Native C++ compiler: c++ (gcc 7.3.0 "c++ (Ubuntu 7.3.0-17ubuntu1) 7.3.0") Appending CXXFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Appending LDFLAGS from environment: '-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now' Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' Build machine cpu family: s390x Build machine cpu: s390x Has header "sys/resource.h": YES Has header "fenv.h": YES Checking for function "log2": YES Checking for function "feenableexcept": YES Configuring config.h using configuration Compiler for C++ supports arguments -Wno-maybe-uninitialized -Wmaybe-uninitialized: YES Found pkg-config: /usr/bin/pkg-config (0.29.1) Native dependency cairo found: YES 1.15.10 Dependency Boost (program_options, random, system, filesystem, chrono) found: YES 1.65.1 Native dependency eigen3 found: YES 3.3.4 Has header "nlohmann/json.hpp": YES Library dl found: YES Program pandoc found: YES (/usr/bin/pandoc) Build targets in project: 72 Found ninja-1.8.2 at /usr/bin/ninja make[1]: Leaving directory '/<>/bali-phy-3.0.3+dfsg' dh_auto_build -a -O--buildsystem=meson cd obj-s390x-linux-gnu && LC_ALL=C.UTF-8 ninja -j4 -v [1/241] /usr/bin/python3 /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /<>/bali-phy-3.0.3+dfsg/src @git_message@ '(.*)' /<>/bali-phy-3.0.3+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)' [2/241] c++ -Isrc/src@@libsums@sta -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fno-fast-math -MD -MQ 'src/src@@libsums@sta/computation_machine_sums.cc.o' -MF 'src/src@@libsums@sta/computation_machine_sums.cc.o.d' -o 'src/src@@libsums@sta/computation_machine_sums.cc.o' -c ../src/computation/machine/sums.cc [3/241] rm -f src/liblibsums.a && gcc-ar csrD src/liblibsums.a 'src/src@@libsums@sta/computation_machine_sums.cc.o' [4/241] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/util.cc.o' -MF 'src/src@@bali-phy@sta/util.cc.o.d' -o 'src/src@@bali-phy@sta/util.cc.o' -c ../src/util.cc [5/241] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/io.cc.o' -MF 'src/src@@bali-phy@sta/io.cc.o.d' -o 'src/src@@bali-phy@sta/io.cc.o' -c ../src/io.cc [6/241] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tree_sequencetree.cc.o' -MF 'src/src@@bali-phy@sta/tree_sequencetree.cc.o.d' -o 'src/src@@bali-phy@sta/tree_sequencetree.cc.o' -c ../src/tree/sequencetree.cc [7/241] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/sequence_sequence.cc.o' -MF 'src/src@@bali-phy@sta/sequence_sequence.cc.o.d' -o 'src/src@@bali-phy@sta/sequence_sequence.cc.o' -c ../src/sequence/sequence.cc [8/241] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tree_tree-util.cc.o' -MF 'src/src@@bali-phy@sta/tree_tree-util.cc.o.d' -o 'src/src@@bali-phy@sta/tree_tree-util.cc.o' -c ../src/tree/tree-util.cc [9/241] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/sequence_alphabet.cc.o' 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'src/src@@bali-phy@sta/tools_distance-report.cc.o' -MF 'src/src@@bali-phy@sta/tools_distance-report.cc.o.d' -o 'src/src@@bali-phy@sta/tools_distance-report.cc.o' -c ../src/tools/distance-report.cc [31/241] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_mctree.cc.o' -MF 'src/src@@bali-phy@sta/tools_mctree.cc.o.d' -o 'src/src@@bali-phy@sta/tools_mctree.cc.o' -c ../src/tools/mctree.cc [32/241] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_distance-methods.cc.o' -MF 'src/src@@bali-phy@sta/tools_distance-methods.cc.o.d' -o 'src/src@@bali-phy@sta/tools_distance-methods.cc.o' -c ../src/tools/distance-methods.cc [33/241] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o' -MF 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o.d' -o 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o' -c ../src/tools/joint-A-T.cc [34/241] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_inverse.cc.o' -MF 'src/src@@bali-phy@sta/tools_inverse.cc.o.d' -o 'src/src@@bali-phy@sta/tools_inverse.cc.o' -c ../src/tools/inverse.cc [35/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp_hmm.cc.o' -c ../src/dp/dp_hmm.cc [36/241] c++ -Isrc/src@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o' -MF 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o.d' -o 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o' -c ../src/tools/consensus-tree.cc [37/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/util_ptree.cc.o' -MF 'src/src@@bali-phy@exe/util_ptree.cc.o.d' -o 'src/src@@bali-phy@exe/util_ptree.cc.o' -c ../src/util/ptree.cc [38/241] rm -f src/libbali-phy.a && gcc-ar csrD src/libbali-phy.a 'src/src@@bali-phy@sta/io.cc.o' 'src/src@@bali-phy@sta/util.cc.o' 'src/src@@bali-phy@sta/tree_sequencetree.cc.o' 'src/src@@bali-phy@sta/tree_tree.cc.o' 'src/src@@bali-phy@sta/sequence_alphabet.cc.o' 'src/src@@bali-phy@sta/sequence_sequence.cc.o' 'src/src@@bali-phy@sta/tree_tree-util.cc.o' 'src/src@@bali-phy@sta/tools_read-trees.cc.o' 'src/src@@bali-phy@sta/sequence_sequence-format.cc.o' 'src/src@@bali-phy@sta/alignment_alignment-util.cc.o' 'src/src@@bali-phy@sta/rng.cc.o' 'src/src@@bali-phy@sta/alignment_load.cc.o' 'src/src@@bali-phy@sta/alignment_alignment.cc.o' 'src/src@@bali-phy@sta/tools_statistics.cc.o' 'src/src@@bali-phy@sta/tools_partition.cc.o' 'src/src@@bali-phy@sta/tools_tree-dist.cc.o' 'src/src@@bali-phy@sta/alignment_alignment-random.cc.o' 'src/src@@bali-phy@sta/setup.cc.o' 'src/src@@bali-phy@sta/tree_randomtree.cc.o' 'src/src@@bali-phy@sta/util-random.cc.o' 'src/src@@bali-phy@sta/tools_parsimony.cc.o' 'src/src@@bali-phy@sta/alignment_index-matrix.cc.o' 'src/src@@bali-phy@sta/tools_mctree.cc.o' 'src/src@@bali-phy@sta/tools_stats-table.cc.o' 'src/src@@bali-phy@sta/tools_findroot.cc.o' 'src/src@@bali-phy@sta/tools_optimize.cc.o' 'src/src@@bali-phy@sta/tools_distance-report.cc.o' 'src/src@@bali-phy@sta/n_indels.cc.o' 'src/src@@bali-phy@sta/tools_inverse.cc.o' 'src/src@@bali-phy@sta/tools_joint-A-T.cc.o' 'src/src@@bali-phy@sta/tools_distance-methods.cc.o' 'src/src@@bali-phy@sta/tools_consensus-tree.cc.o' [39/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/substitution_substitution.cc.o' -MF 'src/src@@bali-phy@exe/substitution_substitution.cc.o.d' -o 'src/src@@bali-phy@exe/substitution_substitution.cc.o' -c ../src/substitution/substitution.cc [40/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_logger.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_logger.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_logger.cc.o' -c ../src/mcmc/logger.cc [41/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/math_exponential.cc.o' -MF 'src/src@@bali-phy@exe/math_exponential.cc.o.d' -o 'src/src@@bali-phy@exe/math_exponential.cc.o' -c ../src/math/exponential.cc [42/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/parser_desugar.cc.o' -MF 'src/src@@bali-phy@exe/parser_desugar.cc.o.d' -o 'src/src@@bali-phy@exe/parser_desugar.cc.o' -c ../src/parser/desugar.cc [43/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_moves.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_moves.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_moves.cc.o' -c ../src/mcmc/moves.cc [44/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/math_eigenvalue.cc.o' -MF 'src/src@@bali-phy@exe/math_eigenvalue.cc.o.d' -o 'src/src@@bali-phy@exe/math_eigenvalue.cc.o' -c ../src/math/eigenvalue.cc [45/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/prior.cc.o' -MF 'src/src@@bali-phy@exe/prior.cc.o.d' -o 'src/src@@bali-phy@exe/prior.cc.o' -c ../src/prior.cc [46/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/probability_choose.cc.o' -MF 'src/src@@bali-phy@exe/probability_choose.cc.o.d' -o 'src/src@@bali-phy@exe/probability_choose.cc.o' -c ../src/probability/choose.cc [47/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_mcmc.cc.o' -c ../src/mcmc/mcmc.cc [48/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_parameters.cc.o' -MF 'src/src@@bali-phy@exe/models_parameters.cc.o.d' -o 'src/src@@bali-phy@exe/models_parameters.cc.o' -c ../src/models/parameters.cc [49/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -c ../src/mcmc/sample-branch-lengths.cc [50/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_hmm.cc.o' -MF 'src/src@@bali-phy@exe/dp_hmm.cc.o.d' -o 'src/src@@bali-phy@exe/dp_hmm.cc.o' -c ../src/dp/hmm.cc [51/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_dp-engine.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-engine.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-engine.cc.o' -c ../src/dp/dp-engine.cc [52/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_TreeInterface.cc.o' -MF 'src/src@@bali-phy@exe/models_TreeInterface.cc.o.d' -o 'src/src@@bali-phy@exe/models_TreeInterface.cc.o' -c ../src/models/TreeInterface.cc [53/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_dp-array.cc.o' -MF 'src/src@@bali-phy@exe/dp_dp-array.cc.o.d' -o 'src/src@@bali-phy@exe/dp_dp-array.cc.o' -c ../src/dp/dp-array.cc [54/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/bali-phy.cc.o' -MF 'src/src@@bali-phy@exe/bali-phy.cc.o.d' -o 'src/src@@bali-phy@exe/bali-phy.cc.o' -c ../src/bali-phy.cc [55/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_3way.cc.o' -MF 'src/src@@bali-phy@exe/dp_3way.cc.o.d' -o 'src/src@@bali-phy@exe/dp_3way.cc.o' -c ../src/dp/3way.cc [56/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual 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'src/src@@bali-phy@exe/dp_dp-cube.cc.o' -c ../src/dp/dp-cube.cc [64/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -c ../src/mcmc/sample-two-nodes.cc [65/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing 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'src/src@@bali-phy@exe/models_setup.cc.o.d' -o 'src/src@@bali-phy@exe/models_setup.cc.o' -c ../src/models/setup.cc [67/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o' -MF 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o.d' -o 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o' -c ../src/dp/alignment-sums.cc [68/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare 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'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' -c ../src/mcmc/sample-topology-SPR.cc [70/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/probability_probability.cc.o' -MF 'src/src@@bali-phy@exe/probability_probability.cc.o.d' -o 'src/src@@bali-phy@exe/probability_probability.cc.o' -c ../src/probability/probability.cc [71/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_model.cc.o' -MF 'src/src@@bali-phy@exe/models_model.cc.o.d' -o 'src/src@@bali-phy@exe/models_model.cc.o' -c ../src/models/model.cc [72/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/myexception.cc.o' -MF 'src/src@@bali-phy@exe/myexception.cc.o.d' -o 'src/src@@bali-phy@exe/myexception.cc.o' -c ../src/myexception.cc [73/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/math_pow2.cc.o' -MF 'src/src@@bali-phy@exe/math_pow2.cc.o.d' -o 'src/src@@bali-phy@exe/math_pow2.cc.o' -c ../src/math/pow2.cc [74/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o' -MF 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o.d' -o 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o' -c ../src/alignment/alignment-constraint.cc [75/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/monitor.cc.o' -MF 'src/src@@bali-phy@exe/monitor.cc.o.d' -o 'src/src@@bali-phy@exe/monitor.cc.o' -c ../src/monitor.cc ../src/monitor.cc: In function ‘void report_mem()’: ../src/monitor.cc:113:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(cmd.str().c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~ [76/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/substitution_parsimony.cc.o' -MF 'src/src@@bali-phy@exe/substitution_parsimony.cc.o.d' -o 'src/src@@bali-phy@exe/substitution_parsimony.cc.o' -c ../src/substitution/parsimony.cc [77/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/n_indels2.cc.o' -MF 'src/src@@bali-phy@exe/n_indels2.cc.o.d' -o 'src/src@@bali-phy@exe/n_indels2.cc.o' -c ../src/n_indels2.cc [78/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare 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'src/src@@bali-phy@exe/mcmc_proposals.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_proposals.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_proposals.cc.o' -c ../src/mcmc/proposals.cc [80/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/tools_parsimony2.cc.o' -MF 'src/src@@bali-phy@exe/tools_parsimony2.cc.o.d' -o 'src/src@@bali-phy@exe/tools_parsimony2.cc.o' -c ../src/tools/parsimony2.cc [81/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/version.cc.o' -MF 'src/src@@bali-phy@exe/version.cc.o.d' -o 'src/src@@bali-phy@exe/version.cc.o' -c ../src/version.cc ../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] s<<__DATE__<<" "<<__TIME__; ^~~~~~~~ ../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] s<<__DATE__<<" "<<__TIME__; ^~~~~~~~ [82/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/timer_stack.cc.o' -MF 'src/src@@bali-phy@exe/timer_stack.cc.o.d' -o 'src/src@@bali-phy@exe/timer_stack.cc.o' -c ../src/timer_stack.cc [83/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o' -c ../src/mcmc/slice-sampling.cc [84/241] c++ -Isrc/src@@subsample@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@subsample@exe/tools_subsample.cc.o' -MF 'src/src@@subsample@exe/tools_subsample.cc.o.d' -o 'src/src@@subsample@exe/tools_subsample.cc.o' -c ../src/tools/subsample.cc [85/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_operator.cc.o' -MF 'src/src@@bali-phy@exe/computation_operator.cc.o.d' -o 'src/src@@bali-phy@exe/computation_operator.cc.o' -c ../src/computation/operator.cc [86/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_setup.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_setup.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_setup.cc.o' -c ../src/mcmc/setup.cc [87/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_AIS.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_AIS.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_AIS.cc.o' -c ../src/mcmc/AIS.cc [88/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o' -c ../src/computation/expression/constructor.cc [89/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_expression.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_expression.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_expression.cc.o' -c ../src/computation/expression/expression.cc [90/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o' -c ../src/computation/expression/AST_node.cc [91/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_apply.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_apply.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_apply.cc.o' -c ../src/computation/expression/apply.cc [92/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o' -c ../src/computation/expression/expression_ref.cc [93/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o' -c ../src/computation/expression/substitute.cc [94/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o' -c ../src/computation/expression/indexify.cc [95/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_let.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_let.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_let.cc.o' -c ../src/computation/expression/let.cc [96/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_trim.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_trim.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_trim.cc.o' -c ../src/computation/expression/trim.cc [97/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o' -c ../src/computation/expression/tuple.cc [98/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_case.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_case.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_case.cc.o' -c ../src/computation/expression/case.cc ../src/computation/expression/case.cc: In function ‘expression_ref block_case(const std::vector&, const std::vector >&, const std::vector&)’: ../src/computation/expression/case.cc:139:15: warning: unused variable ‘N’ [-Wunused-variable] const int N = x.size(); ^ [99/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_list.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_list.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_list.cc.o' -c ../src/computation/expression/list.cc [100/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_dummy.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_dummy.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_dummy.cc.o' -c ../src/computation/expression/dummy.cc [101/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o' -MF 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o.d' -o 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o' -c ../src/computation/expression/lambda.cc [102/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_computation.cc.o' -MF 'src/src@@bali-phy@exe/computation_computation.cc.o.d' -o 'src/src@@bali-phy@exe/computation_computation.cc.o' -c ../src/computation/computation.cc [103/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o' -c ../src/computation/machine/tokens.cc [104/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_preprocess.cc.o' -MF 'src/src@@bali-phy@exe/computation_preprocess.cc.o.d' -o 'src/src@@bali-phy@exe/computation_preprocess.cc.o' -c ../src/computation/preprocess.cc [105/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o' -c ../src/computation/machine/graph_register.cc [106/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o' -c ../src/computation/machine/show_graph.cc [107/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_model_expression.cc.o' -MF 'src/src@@bali-phy@exe/computation_model_expression.cc.o.d' -o 'src/src@@bali-phy@exe/computation_model_expression.cc.o' -c ../src/computation/model_expression.cc [108/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_module.cc.o' -MF 'src/src@@bali-phy@exe/computation_module.cc.o.d' -o 'src/src@@bali-phy@exe/computation_module.cc.o' -c ../src/computation/module.cc [109/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o' -c ../src/computation/machine/evaluate.cc [110/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_gc.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_gc.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_gc.cc.o' -c ../src/computation/machine/gc.cc [111/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o' -MF 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o.d' -o 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o' -c ../src/computation/machine/reroot.cc [112/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_operations.cc.o' -MF 'src/src@@bali-phy@exe/computation_operations.cc.o.d' -o 'src/src@@bali-phy@exe/computation_operations.cc.o' -c ../src/computation/operations.cc [113/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_loader.cc.o' -MF 'src/src@@bali-phy@exe/computation_loader.cc.o.d' -o 'src/src@@bali-phy@exe/computation_loader.cc.o' -c ../src/computation/loader.cc [114/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_context.cc.o' -MF 'src/src@@bali-phy@exe/computation_context.cc.o.d' -o 'src/src@@bali-phy@exe/computation_context.cc.o' -c ../src/computation/context.cc [115/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat 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[117/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o' -MF 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o.d' -o 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o' -c ../src/mcmc/sample-tri.cc [118/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_program.cc.o' -MF 'src/src@@bali-phy@exe/computation_program.cc.o.d' -o 'src/src@@bali-phy@exe/computation_program.cc.o' -c ../src/computation/program.cc [119/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_A-T-model.cc.o' -MF 'src/src@@bali-phy@exe/startup_A-T-model.cc.o.d' -o 'src/src@@bali-phy@exe/startup_A-T-model.cc.o' -c 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-funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_system.cc.o' -MF 'src/src@@bali-phy@exe/startup_system.cc.o.d' -o 'src/src@@bali-phy@exe/startup_system.cc.o' -c ../src/startup/system.cc [122/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_loggers.cc.o' -MF 'src/src@@bali-phy@exe/startup_loggers.cc.o.d' -o 'src/src@@bali-phy@exe/startup_loggers.cc.o' -c ../src/startup/loggers.cc [123/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/parser_parse.cc.o' -MF 'src/src@@bali-phy@exe/parser_parse.cc.o.d' -o 'src/src@@bali-phy@exe/parser_parse.cc.o' -c ../src/parser/parse.cc ../src/parser/parse.cc: In constructor ‘HParser::HParser(HParser::error_handler_type&, const TokenDef&) [with TokenDef = HTokens, boost::mpl::vector > > > >; Iterator = boost::spirit::lex::lexertl::iterator, boost::mpl::vector > >, boost::spirit::lex::lexertl::detail::data, boost::spirit::basic_istream_iterator, mpl_::bool_, mpl_::bool_ > >]’: ../src/parser/parse.cc:563:5: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without HParser(error_handler_type& error_handler, const TokenDef& tok) ^~~~~~~ [124/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/startup_cmd_line.cc.o' -MF 'src/src@@bali-phy@exe/startup_cmd_line.cc.o.d' -o 'src/src@@bali-phy@exe/startup_cmd_line.cc.o' -c ../src/startup/cmd_line.cc [125/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_parse.cc.o' -MF 'src/src@@bali-phy@exe/models_parse.cc.o.d' -o 'src/src@@bali-phy@exe/models_parse.cc.o' -c ../src/models/parse.cc [126/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat 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-fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/models_translate.cc.o' -MF 'src/src@@bali-phy@exe/models_translate.cc.o.d' -o 'src/src@@bali-phy@exe/models_translate.cc.o' -c ../src/models/translate.cc [129/241] c++ -Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong 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-Isrc/src@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o' -c ../src/computation/optimization/inliner.cc [132/241] c++ -Isrc/builtins/src@builtins@@Array@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual 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-fPIC -Wl,--start-group -Wl,-soname,Data.so -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [138/241] c++ -Isrc/builtins/src@builtins@@Pair@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o' -MF 'src/builtins/src@builtins@@Pair@sha/Pair.cc.o.d' -o 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'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o' -MF 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o.d' -o 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o' -c ../src/computation/optimization/occurrence.cc [141/241] c++ -Isrc/builtins/src@builtins@@Prelude@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o' -MF 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o.d' -o 'src/builtins/src@builtins@@Prelude@sha/Prelude.cc.o' -c 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'src/src@@bali-phy@exe/dp_dp-array.cc.o' 'src/src@@bali-phy@exe/dp_dp-matrix.cc.o' 'src/src@@bali-phy@exe/dp_3way.cc.o' 'src/src@@bali-phy@exe/dp_2way.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-alignment.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-node.cc.o' 'src/src@@bali-phy@exe/imodel_imodel.cc.o' 'src/src@@bali-phy@exe/dp_5way.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' 'src/src@@bali-phy@exe/dp_dp-cube.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-cube.cc.o' 'src/src@@bali-phy@exe/models_setup.cc.o' 'src/src@@bali-phy@exe/startup_help.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' 'src/src@@bali-phy@exe/dp_alignment-sums.cc.o' 'src/src@@bali-phy@exe/probability_probability.cc.o' 'src/src@@bali-phy@exe/models_model.cc.o' 'src/src@@bali-phy@exe/alignment_alignment-constraint.cc.o' 'src/src@@bali-phy@exe/monitor.cc.o' 'src/src@@bali-phy@exe/myexception.cc.o' 'src/src@@bali-phy@exe/math_pow2.cc.o' 'src/src@@bali-phy@exe/substitution_parsimony.cc.o' 'src/src@@bali-phy@exe/mcmc_proposals.cc.o' 'src/src@@bali-phy@exe/n_indels2.cc.o' 'src/src@@bali-phy@exe/alignment_alignment-util2.cc.o' 'src/src@@bali-phy@exe/tools_parsimony2.cc.o' 'src/src@@bali-phy@exe/version.cc.o' 'src/src@@bali-phy@exe/mcmc_slice-sampling.cc.o' 'src/src@@bali-phy@exe/timer_stack.cc.o' 'src/src@@bali-phy@exe/mcmc_setup.cc.o' 'src/src@@bali-phy@exe/mcmc_logger.cc.o' 'src/src@@bali-phy@exe/mcmc_AIS.cc.o' 'src/src@@bali-phy@exe/computation_operator.cc.o' 'src/src@@bali-phy@exe/computation_expression_expression.cc.o' 'src/src@@bali-phy@exe/computation_expression_constructor.cc.o' 'src/src@@bali-phy@exe/computation_expression_expression_ref.cc.o' 'src/src@@bali-phy@exe/computation_expression_AST_node.cc.o' 'src/src@@bali-phy@exe/computation_expression_apply.cc.o' 'src/src@@bali-phy@exe/computation_expression_substitute.cc.o' 'src/src@@bali-phy@exe/computation_expression_indexify.cc.o' 'src/src@@bali-phy@exe/computation_expression_let.cc.o' 'src/src@@bali-phy@exe/computation_expression_case.cc.o' 'src/src@@bali-phy@exe/computation_expression_trim.cc.o' 'src/src@@bali-phy@exe/computation_expression_tuple.cc.o' 'src/src@@bali-phy@exe/computation_expression_list.cc.o' 'src/src@@bali-phy@exe/computation_expression_dummy.cc.o' 'src/src@@bali-phy@exe/computation_expression_lambda.cc.o' 'src/src@@bali-phy@exe/computation_computation.cc.o' 'src/src@@bali-phy@exe/computation_machine_tokens.cc.o' 'src/src@@bali-phy@exe/computation_preprocess.cc.o' 'src/src@@bali-phy@exe/computation_machine_graph_register.cc.o' 'src/src@@bali-phy@exe/computation_machine_show_graph.cc.o' 'src/src@@bali-phy@exe/computation_module.cc.o' 'src/src@@bali-phy@exe/computation_model_expression.cc.o' 'src/src@@bali-phy@exe/computation_machine_evaluate.cc.o' 'src/src@@bali-phy@exe/computation_machine_gc.cc.o' 'src/src@@bali-phy@exe/computation_machine_reroot.cc.o' 'src/src@@bali-phy@exe/computation_operations.cc.o' 'src/src@@bali-phy@exe/computation_loader.cc.o' 'src/src@@bali-phy@exe/computation_context.cc.o' 'src/src@@bali-phy@exe/computation_closure.cc.o' 'src/src@@bali-phy@exe/computation_optimization_let-float.cc.o' 'src/src@@bali-phy@exe/computation_program.cc.o' 'src/src@@bali-phy@exe/mcmc_sample-tri.cc.o' 'src/src@@bali-phy@exe/startup_A-T-model.cc.o' 'src/src@@bali-phy@exe/startup_files.cc.o' 'src/src@@bali-phy@exe/startup_loggers.cc.o' 'src/src@@bali-phy@exe/startup_system.cc.o' 'src/src@@bali-phy@exe/startup_cmd_line.cc.o' 'src/src@@bali-phy@exe/models_rules.cc.o' 'src/src@@bali-phy@exe/models_parse.cc.o' 'src/src@@bali-phy@exe/models_translate.cc.o' 'src/src@@bali-phy@exe/models_unification.cc.o' 'src/src@@bali-phy@exe/computation_optimization_simplifier.cc.o' 'src/src@@bali-phy@exe/startup_paths.cc.o' 'src/src@@bali-phy@exe/computation_optimization_occurrence.cc.o' 'src/src@@bali-phy@exe/computation_optimization_inliner.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,-export-dynamic -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a src/liblibsums.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -ldl -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [150/241] c++ -Isrc/builtins/src@builtins@@Range@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Range@sha/Range.cc.o' -MF 'src/builtins/src@builtins@@Range@sha/Range.cc.o.d' -o 'src/builtins/src@builtins@@Range@sha/Range.cc.o' -c ../src/builtins/Range.cc [151/241] c++ -o src/builtins/Range.so 'src/builtins/src@builtins@@Range@sha/Range.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [152/241] c++ -Isrc/builtins/src@builtins@@PopGen@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o' -MF 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o.d' -o 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o' -c ../src/builtins/PopGen.cc [153/241] c++ -o src/builtins/PopGen.so 'src/builtins/src@builtins@@PopGen@sha/PopGen.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [154/241] c++ -Isrc/builtins/src@builtins@@Vector@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o' -MF 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o.d' -o 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o' -c ../src/builtins/Vector.cc [155/241] c++ -o src/builtins/Vector.so 'src/builtins/src@builtins@@Vector@sha/Vector.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [156/241] c++ -Isrc/builtins/src@builtins@@Environment@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o' -MF 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o.d' -o 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o' -c ../src/builtins/Environment.cc [157/241] c++ -Isrc/builtins/src@builtins@@MCMC@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o' -MF 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o.d' -o 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o' -c ../src/builtins/MCMC.cc [158/241] c++ -o src/builtins/Environment.so 'src/builtins/src@builtins@@Environment@sha/Environment.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [159/241] c++ -o src/builtins/MCMC.so 'src/builtins/src@builtins@@MCMC@sha/MCMC.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [160/241] c++ -Isrc/builtins/src@builtins@@SModel@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o' -MF 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o.d' -o 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o' -c ../src/builtins/SModel.cc [161/241] c++ -o src/builtins/SModel.so 'src/builtins/src@builtins@@SModel@sha/SModel.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [162/241] c++ -Isrc/src@@model_P@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@model_P@exe/tools_model_P.cc.o' -MF 'src/src@@model_P@exe/tools_model_P.cc.o.d' -o 'src/src@@model_P@exe/tools_model_P.cc.o' -c ../src/tools/model_P.cc [163/241] c++ -o src/model_P 'src/src@@model_P@exe/tools_model_P.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [164/241] c++ -Isrc/src@@stats-select@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@stats-select@exe/tools_stats-select.cc.o' -MF 'src/src@@stats-select@exe/tools_stats-select.cc.o.d' -o 'src/src@@stats-select@exe/tools_stats-select.cc.o' -c ../src/tools/stats-select.cc [165/241] c++ -o src/stats-select 'src/src@@stats-select@exe/tools_stats-select.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [166/241] c++ -Isrc/src@@statreport@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@statreport@exe/tools_statreport.cc.o' -MF 'src/src@@statreport@exe/tools_statreport.cc.o.d' -o 'src/src@@statreport@exe/tools_statreport.cc.o' -c ../src/tools/statreport.cc [167/241] c++ -o src/statreport 'src/src@@statreport@exe/tools_statreport.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [168/241] c++ -Isrc/src@@alignment-gild@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o' -MF 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o.d' -o 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o' -c ../src/tools/alignment-gild.cc [169/241] c++ -o src/alignment-gild 'src/src@@alignment-gild@exe/tools_alignment-gild.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [170/241] c++ -Isrc/src@@alignment-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -MF 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o.d' -o 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -c ../src/tools/alignment-consensus.cc [171/241] c++ -o src/alignment-consensus 'src/src@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [172/241] c++ -Isrc/builtins/src@builtins@@SMC@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o' -MF 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o.d' -o 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o' -c ../src/builtins/SMC.cc [173/241] c++ -o src/builtins/SMC.so 'src/builtins/src@builtins@@SMC@sha/SMC.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [174/241] c++ -Isrc/src@@alignment-max@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-max@exe/tools_alignment-max.cc.o' -MF 'src/src@@alignment-max@exe/tools_alignment-max.cc.o.d' -o 'src/src@@alignment-max@exe/tools_alignment-max.cc.o' -c ../src/tools/alignment-max.cc [175/241] c++ -o src/alignment-max 'src/src@@alignment-max@exe/tools_alignment-max.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [176/241] c++ -Isrc/src@@alignment-chop-internal@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -MF 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o.d' -o 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -c ../src/tools/alignment-chop-internal.cc [177/241] c++ -o src/alignment-chop-internal 'src/src@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [178/241] c++ -Isrc/src@@alignment-indices@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o' -MF 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o.d' -o 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o' -c ../src/tools/alignment-indices.cc [179/241] c++ -o src/alignment-indices 'src/src@@alignment-indices@exe/tools_alignment-indices.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [180/241] c++ -Isrc/src@@alignment-info@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-info@exe/tools_alignment-info.cc.o' -MF 'src/src@@alignment-info@exe/tools_alignment-info.cc.o.d' -o 'src/src@@alignment-info@exe/tools_alignment-info.cc.o' -c ../src/tools/alignment-info.cc [181/241] c++ -o src/alignment-info 'src/src@@alignment-info@exe/tools_alignment-info.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [182/241] c++ -Isrc/src@@alignment-find@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-find@exe/tools_alignment-find.cc.o' -MF 'src/src@@alignment-find@exe/tools_alignment-find.cc.o.d' -o 'src/src@@alignment-find@exe/tools_alignment-find.cc.o' -c ../src/tools/alignment-find.cc [183/241] c++ -o src/alignment-find 'src/src@@alignment-find@exe/tools_alignment-find.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [184/241] c++ -Isrc/src@@alignment-translate@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o' -MF 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o.d' -o 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o' -c ../src/tools/alignment-translate.cc [185/241] c++ -Isrc/src@@alignment-cat@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o' -MF 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o.d' -o 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o' -c ../src/tools/alignment-cat.cc [186/241] c++ -o src/alignment-translate 'src/src@@alignment-translate@exe/tools_alignment-translate.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [187/241] c++ -o src/alignment-cat 'src/src@@alignment-cat@exe/tools_alignment-cat.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [188/241] c++ -Isrc/src@@tree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -MF 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o.d' -o 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -c ../src/tools/tree-mean-lengths.cc [189/241] c++ -o src/tree-mean-lengths 'src/src@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [190/241] c++ -Isrc/src@@trees-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o' -MF 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o.d' -o 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o' -c ../src/tools/trees-consensus.cc [191/241] c++ -Isrc/src@@trees-to-SRQ@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -MF 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o.d' -o 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -c ../src/tools/trees-to-SRQ.cc [192/241] c++ -o src/trees-consensus 'src/src@@trees-consensus@exe/tools_trees-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [193/241] c++ -o src/trees-to-SRQ 'src/src@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [194/241] c++ -o src/subsample 'src/src@@subsample@exe/tools_subsample.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [195/241] c++ -Isrc/src@@mctree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -MF 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o.d' -o 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -c ../src/tools/mctree-mean-lengths.cc [196/241] c++ -o src/mctree-mean-lengths 'src/src@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [197/241] c++ -Isrc/src@@pickout@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@pickout@exe/tools_pickout.cc.o' -MF 'src/src@@pickout@exe/tools_pickout.cc.o.d' -o 'src/src@@pickout@exe/tools_pickout.cc.o' -c ../src/tools/pickout.cc [198/241] c++ -o src/pickout 'src/src@@pickout@exe/tools_pickout.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [199/241] c++ -Isrc/src@@cut-range@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@cut-range@exe/tools_cut-range.cc.o' -MF 'src/src@@cut-range@exe/tools_cut-range.cc.o.d' -o 'src/src@@cut-range@exe/tools_cut-range.cc.o' -c ../src/tools/cut-range.cc [200/241] c++ -o src/cut-range 'src/src@@cut-range@exe/tools_cut-range.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [201/241] c++ -Isrc/src@@alignment-thin@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o' -MF 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o.d' -o 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o' -c ../src/tools/alignment-thin.cc [202/241] c++ -Isrc/src@@trees-distances@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-distances@exe/tools_trees-distances.cc.o' -MF 'src/src@@trees-distances@exe/tools_trees-distances.cc.o.d' -o 'src/src@@trees-distances@exe/tools_trees-distances.cc.o' -c ../src/tools/trees-distances.cc [203/241] c++ -o src/alignment-thin 'src/src@@alignment-thin@exe/tools_alignment-thin.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [204/241] c++ -o src/trees-distances 'src/src@@trees-distances@exe/tools_trees-distances.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [205/241] c++ -Isrc/src@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-draw@exe/tools_colors.cc.o' -MF 'src/src@@alignment-draw@exe/tools_colors.cc.o.d' -o 'src/src@@alignment-draw@exe/tools_colors.cc.o' -c ../src/tools/colors.cc [206/241] c++ -Isrc/src@@trees-bootstrap@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o' -MF 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o.d' -o 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o' -c ../src/tools/bootstrap.cc [207/241] c++ -Isrc/src@@alignments-diff@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o' -MF 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o.d' -o 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o' -c ../src/tools/alignments-diff.cc [208/241] c++ -o src/alignments-diff 'src/src@@alignments-diff@exe/tools_alignments-diff.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [209/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_5eae9700324d6d33c15080421152baaa788c55b5.dat [210/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_367f79030fcf0a0d68eafbd57b1914d3c98be370.dat [211/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_ed3a5ed0e3701ff563a2d06deec69201358d918f.dat [212/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_8289840147ce506731e90792ef623b91d01426fc.dat [213/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_4b8aada7003d47491c5a76c6e77e9cb86b3bbfe4.dat [214/241] c++ -Isrc/src@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o' -MF 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o.d' -o 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o' -c ../src/tools/alignment-draw.cc [215/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_595a24513603036aa4be7054eeaa7bf68ff042ff.dat [216/241] c++ -o src/alignment-draw 'src/src@@alignment-draw@exe/tools_alignment-draw.cc.o' 'src/src@@alignment-draw@exe/tools_colors.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [217/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_a698bd3f50a9617bd4ca75639e0a4435040eb454.dat [218/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_f3ca1919f74d673af9d4800adfa4c25b29cb2857.dat [219/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_08481cd6a995b1bf0494a31c9942de5a7e2cdb07.dat [220/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_5b16f2faa6c4df6aa33de4ab0e14f5dd64c98a6b.dat [221/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_9d08277209bb84cfd36ead178ea1de921118dfcc.dat [222/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_99c86f9626ad1d46339b534979e54317bd36e75c.dat [223/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_3b49b74da369db3f68b4e15b3e1c08a4deb65386.dat [224/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_c2980a08b7e55f5bd14d77690b9f4e5472925a5d.dat [225/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_b92794fb3bc025c008695f15e7cce8fad1477c62.dat [226/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_244132789aab12efdfa22b70c32fc37c7f31b368.dat [227/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_90b8fcb426584d8c0d6fc18d1cf1cb975d138adc.dat [228/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_da4c3c9a6ab00c376a332fbef2f3dfc60b403036.dat [229/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_58556ac770092d541498b37d7dad8dcf5705290d.dat [230/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_3e6ab5a4670eb3e6ac17eb3dc872538f87e75261.dat [231/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_3037d11300ba11171e2d06072918fcf6a1ed0ed5.dat [232/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_a968b83bea02636504efcd1e742bfc160ff00109.dat [233/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_199daf22773fb2417342b8cbd17de6d5121eb009.dat [234/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_57a2a40c7ebcb029a771f5d98d4f17205545e77d.dat [235/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_a7ebc04ccf23b2de6b0b664db5370552e7328ef8.dat [236/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_9374af30ba4ece1e0b9619414b954033f58a085c.dat [237/241] /usr/bin/python3 /usr/bin/meson --internal exe /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-private/meson_exe_pandoc_d6a23242dd6c1f50c7d04d4d5caca1ef55c2254b.dat [238/241] c++ -Isrc/src@@trees-bootstrap@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -MF 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o.d' -o 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -c ../src/tools/trees-bootstrap.cc [239/241] c++ -o src/trees-bootstrap 'src/src@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' 'src/src@@trees-bootstrap@exe/tools_bootstrap.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono [240/241] c++ -Isrc/src@@draw-tree@exe -Isrc -I../src -I. -I../ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/src@@draw-tree@exe/tools_draw-tree.cc.o' -MF 'src/src@@draw-tree@exe/tools_draw-tree.cc.o.d' -o 'src/src@@draw-tree@exe/tools_draw-tree.cc.o' -c ../src/tools/draw-tree.cc [241/241] c++ -o src/draw-tree 'src/src@@draw-tree@exe/tools_draw-tree.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/bali-phy-3.0.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group -lcairo -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono dh_auto_test -a -O--buildsystem=meson cd obj-s390x-linux-gnu && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 ninja test [1/4] Generating git-version.h with a custom command. [1/2] Running all tests. 1/5 bali-phy version OK 0.02 s 2/5 bali-phy help OK 0.01 s 3/5 bali-phy 5d test OK 0.94 s 4/5 bali-phy 5d +A 50 OK 5.66 s 5/5 bali-phy 5d -A 200 OK 1.27 s OK: 5 FAIL: 0 SKIP: 0 TIMEOUT: 0 Full log written to /<>/bali-phy-3.0.3+dfsg/obj-s390x-linux-gnu/meson-logs/testlog.txt create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem=meson dh_testroot -a -O--buildsystem=meson dh_prep -a -O--buildsystem=meson dh_auto_install -a -O--buildsystem=meson cd obj-s390x-linux-gnu && DESTDIR=/<>/bali-phy-3.0.3\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install [1/4] Generating git-version.h with a custom command. [1/2] Installing files. Installing subdir /<>/bali-phy-3.0.3+dfsg/modules to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing subdir /<>/bali-phy-3.0.3+dfsg/functions to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/functions Installing subdir /<>/bali-phy-3.0.3+dfsg/help to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing subdir /<>/bali-phy-3.0.3+dfsg/examples to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples Installing src/bali-phy to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/bali-phy Installing src/builtins/Array.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/Array.so Installing src/builtins/Data.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/Data.so Installing src/builtins/Prelude.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/Prelude.so Installing src/builtins/Alphabet.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/Alphabet.so Installing src/builtins/Pair.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/Pair.so Installing src/builtins/Modifiables.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/Modifiables.so Installing src/builtins/Alignment.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/Alignment.so Installing src/builtins/PopGen.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/PopGen.so Installing src/builtins/Distribution.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/Distribution.so Installing src/builtins/Range.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/Range.so Installing src/builtins/SModel.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/SModel.so Installing src/builtins/MCMC.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/MCMC.so Installing src/builtins/Vector.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/Vector.so Installing src/builtins/Environment.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/Environment.so Installing src/builtins/SMC.so to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/SMC.so Installing src/model_P to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/model_P Installing src/statreport to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/statreport Installing src/stats-select to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/stats-select Installing src/alignment-gild to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/alignment-gild Installing src/alignment-consensus to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/alignment-consensus Installing src/alignment-max to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/alignment-max Installing src/alignment-chop-internal to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/alignment-chop-internal Installing src/alignment-indices to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/alignment-indices Installing src/alignment-info to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/alignment-info Installing src/alignment-cat to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/alignment-cat Installing src/alignment-translate to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/alignment-translate Installing src/alignment-find to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/alignment-find Installing src/trees-consensus to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/trees-consensus Installing src/tree-mean-lengths to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/tree-mean-lengths Installing src/mctree-mean-lengths to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/mctree-mean-lengths Installing src/trees-to-SRQ to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/trees-to-SRQ Installing src/pickout to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/pickout Installing src/subsample to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/subsample Installing src/cut-range to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/cut-range Installing src/trees-distances to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/trees-distances Installing src/alignment-thin to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/alignment-thin Installing src/alignments-diff to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/alignments-diff Installing src/alignment-draw to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/alignment-draw Installing src/trees-bootstrap to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/trees-bootstrap Installing src/draw-tree to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin/draw-tree Installing doc/bali-phy.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/bali-phy.1 Installing doc/model_P.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/model_P.1 Installing doc/statreport.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/statreport.1 Installing doc/stats-select.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/stats-select.1 Installing doc/alignment-gild.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/alignment-gild.1 Installing doc/alignment-consensus.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/alignment-consensus.1 Installing doc/alignment-max.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/alignment-max.1 Installing doc/alignment-chop-internal.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/alignment-chop-internal.1 Installing doc/alignment-indices.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/alignment-indices.1 Installing doc/alignment-info.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/alignment-info.1 Installing doc/alignment-cat.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/alignment-cat.1 Installing doc/alignment-translate.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/alignment-translate.1 Installing doc/alignment-find.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/alignment-find.1 Installing doc/trees-consensus.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/trees-consensus.1 Installing doc/tree-mean-lengths.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/tree-mean-lengths.1 Installing doc/mctree-mean-lengths.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/mctree-mean-lengths.1 Installing doc/trees-to-SRQ.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/trees-to-SRQ.1 Installing doc/pickout.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/pickout.1 Installing doc/subsample.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/subsample.1 Installing doc/cut-range.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/cut-range.1 Installing doc/trees-distances.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/trees-distances.1 Installing doc/alignment-thin.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/alignment-thin.1 Installing doc/alignments-diff.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/alignments-diff.1 Installing doc/alignment-draw.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/alignment-draw.1 Installing doc/trees-bootstrap.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/trees-bootstrap.1 Installing doc/draw-tree.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/draw-tree.1 Installing doc/bp-analyze.1 to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/man/man1/bp-analyze.1 Installing /<>/bali-phy-3.0.3+dfsg/scripts/bp-analyze to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/bin Installing /<>/bali-phy-3.0.3+dfsg/scripts/compare-runs.R to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.0.3+dfsg/scripts/compare-runs2.R to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.0.3+dfsg/scripts/tree-plot1.R to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.0.3+dfsg/scripts/tree-plot2.R to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.0.3+dfsg/scripts/tree-plot3.R to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.0.3+dfsg/scripts/tree-plot2-3D.R to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.0.3+dfsg/scripts/tree-plot1-3D.R to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.0.3+dfsg/scripts/tree-plot3-3D.R to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.0.3+dfsg/doc/README.html to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy Installing /<>/bali-phy-3.0.3+dfsg/doc/README.xhtml to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy Installing /<>/bali-phy-3.0.3+dfsg/doc/README.pdf to /<>/bali-phy-3.0.3+dfsg/debian/bali-phy/usr/share/doc/bali-phy dh_installdocs -a -O--buildsystem=meson dh_installchangelogs -a -O--buildsystem=meson dh_installman -a -O--buildsystem=meson dh_perl -a -O--buildsystem=meson dh_link -a -O--buildsystem=meson dh_strip_nondeterminism -a -O--buildsystem=meson dh_compress -a -O--buildsystem=meson dh_fixperms -a -O--buildsystem=meson dh_missing -a -O--buildsystem=meson dh_strip -a -O--buildsystem=meson dh_makeshlibs -a -O--buildsystem=meson dh_shlibdeps -a -O--buildsystem=meson dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol _ZN14expression_refC1ERKSt16initializer_listIS_E: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol _ZN12substitution20peel_leaf_branch_SEVERKSt6vectorIiSaIiEERK8alphabetRK3BoxIS0_I14expression_refSaIS9_EEERKN5boost14dynamic_bitsetImSaImEEE: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol _ZN3DNAC1Ev: it's probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _ZTV8alphabet: it's probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol _Z8demangleRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol _ZTV11constructor: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol _Z13modifiable_opR13OperationArgs: it's probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _ZN13OperationArgs25evaluate_slot_to_closure_Ei: it's probably a plugin dpkg-shlibdeps: warning: 38 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol _Z7choose212log_double_tS_: it's probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=meson dh_gencontrol -a -O--buildsystem=meson dh_md5sums -a -O--buildsystem=meson dh_builddeb -a -O--buildsystem=meson INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing bali-phy (in debian/bali-phy); do_strip: , oemstrip: pkgstriptranslations: processing bali-phy-dbgsym (in debian/.debhelper/bali-phy/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/bali-phy/DEBIAN/control, package bali-phy, directory debian/bali-phy pkgstripfiles: Running PNG optimization (using 4 cpus) for package bali-phy ... pkgstripfiles: No PNG files. dpkg-deb: building package 'bali-phy' in '../bali-phy_3.0.3+dfsg-1_s390x.deb'. pkgstripfiles: processing control file: debian/.debhelper/bali-phy/dbgsym-root/DEBIAN/control, package bali-phy-dbgsym, directory debian/.debhelper/bali-phy/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package bali-phy-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'bali-phy-dbgsym' in 'debian/.debhelper/scratch-space/build-bali-phy/bali-phy-dbgsym_3.0.3+dfsg-1_s390x.deb'. Renaming bali-phy-dbgsym_3.0.3+dfsg-1_s390x.deb to bali-phy-dbgsym_3.0.3+dfsg-1_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../bali-phy_3.0.3+dfsg-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build bali-phy-3.0.3+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180505-0312 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bali-phy_3.0.3+dfsg-1_s390x.changes: ------------------------------------ Format: 1.8 Date: Fri, 20 Apr 2018 15:52:59 +0200 Source: bali-phy Binary: bali-phy Architecture: s390x Version: 3.0.3+dfsg-1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: bali-phy - Bayesian Inference of Alignment and Phylogeny Changes: bali-phy (3.0.3+dfsg-1) unstable; urgency=medium . * Team upload. * Require version 0.45 of meson now * New upstream version * Standards-Version: 4.1.4 Checksums-Sha1: 8fd895b36e7d0c563680c305bc0f73adc4828863 97767020 bali-phy-dbgsym_3.0.3+dfsg-1_s390x.ddeb e84f287ddc3a00215db8cccdaad7394cef189037 8283 bali-phy_3.0.3+dfsg-1_s390x.buildinfo 1bd44fcfb1f593f62ee8f25d4282191c0527f93e 4429708 bali-phy_3.0.3+dfsg-1_s390x.deb Checksums-Sha256: 417165876e19f52362f1044f8afbceabf0a0cee0b2bcee681f58d3ee4a74ee07 97767020 bali-phy-dbgsym_3.0.3+dfsg-1_s390x.ddeb 7a5637c66372dfa532d85bf9dd354ba164aa3ed6236d73a03fc36cf8b4d104ad 8283 bali-phy_3.0.3+dfsg-1_s390x.buildinfo 6d0183878b2d761eb18bbc24a7f5549f73c58f4a6678169740ae1b4e06732adc 4429708 bali-phy_3.0.3+dfsg-1_s390x.deb Files: 0c98a8f4fbc56070f56d4c64b1aa3b7e 97767020 debug optional bali-phy-dbgsym_3.0.3+dfsg-1_s390x.ddeb dd7986aa738ea7f17fdbec55bff105b4 8283 science optional bali-phy_3.0.3+dfsg-1_s390x.buildinfo b13e6a0429c62ccd671e347b4b2742ee 4429708 science optional bali-phy_3.0.3+dfsg-1_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bali-phy_3.0.3+dfsg-1_s390x.deb ------------------------------- new debian package, version 2.0. size 4429708 bytes: control archive=10436 bytes. 1212 bytes, 22 lines control 32700 bytes, 384 lines md5sums Package: bali-phy Version: 3.0.3+dfsg-1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 25321 Depends: libboost-chrono1.65.1, libboost-filesystem1.65.1, libboost-program-options1.65.1, libboost-random1.65.1, libboost-system1.65.1, libc6 (>= 2.23), libcairo2 (>= 1.4.10), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), perl:any Recommends: r-base, gnuplot Suggests: figtree, seaview Section: science Priority: optional Homepage: http://www.bali-phy.org Description: Bayesian Inference of Alignment and Phylogeny BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot. . BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene. drwxr-xr-x root/root 0 2018-04-20 13:52 ./ drwxr-xr-x root/root 0 2018-04-20 13:52 ./usr/ drwxr-xr-x root/root 0 2018-04-20 13:52 ./usr/bin/ -rwxr-xr-x root/root 538744 2018-04-20 13:52 ./usr/bin/alignment-cat -rwxr-xr-x root/root 874624 2018-04-20 13:52 ./usr/bin/alignment-chop-internal -rwxr-xr-x root/root 874640 2018-04-20 13:52 ./usr/bin/alignment-consensus -rwxr-xr-x root/root 809096 2018-04-20 13:52 ./usr/bin/alignment-draw -rwxr-xr-x root/root 739448 2018-04-20 13:52 ./usr/bin/alignment-find -rwxr-xr-x root/root 1009792 2018-04-20 13:52 ./usr/bin/alignment-gild -rwxr-xr-x root/root 796800 2018-04-20 13:52 ./usr/bin/alignment-indices -rwxr-xr-x root/root 931960 2018-04-20 13:52 ./usr/bin/alignment-info -rwxr-xr-x root/root 866440 2018-04-20 13:52 ./usr/bin/alignment-max -rwxr-xr-x root/root 870544 2018-04-20 13:52 ./usr/bin/alignment-thin -rwxr-xr-x root/root 747648 2018-04-20 13:52 ./usr/bin/alignment-translate -rwxr-xr-x root/root 759928 2018-04-20 13:52 ./usr/bin/alignments-diff -rwxr-xr-x root/root 6516216 2018-04-20 13:52 ./usr/bin/bali-phy -rwxr-xr-x root/root 75750 2018-03-27 22:38 ./usr/bin/bp-analyze -rwxr-xr-x root/root 264304 2018-04-20 13:52 ./usr/bin/cut-range -rwxr-xr-x root/root 764024 2018-04-20 13:52 ./usr/bin/draw-tree -rwxr-xr-x root/root 731256 2018-04-20 13:52 ./usr/bin/mctree-mean-lengths -rwxr-xr-x root/root 206960 2018-04-20 13:52 ./usr/bin/model_P -rwxr-xr-x root/root 186480 2018-04-20 13:52 ./usr/bin/pickout -rwxr-xr-x root/root 358520 2018-04-20 13:52 ./usr/bin/statreport -rwxr-xr-x root/root 272496 2018-04-20 13:52 ./usr/bin/stats-select -rwxr-xr-x root/root 211064 2018-04-20 13:52 ./usr/bin/subsample -rwxr-xr-x root/root 665720 2018-04-20 13:52 ./usr/bin/tree-mean-lengths -rwxr-xr-x root/root 800896 2018-04-20 13:52 ./usr/bin/trees-bootstrap -rwxr-xr-x root/root 850048 2018-04-20 13:52 ./usr/bin/trees-consensus -rwxr-xr-x root/root 731264 2018-04-20 13:52 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1334296 Build-Time: 293 Distribution: cosmic-proposed Host Architecture: s390x Install-Time: 19 Job: bali-phy_3.0.3+dfsg-1.dsc Machine Architecture: s390x Package: bali-phy Package-Time: 312 Source-Version: 3.0.3+dfsg-1 Space: 1334296 Status: successful Version: 3.0.3+dfsg-1 -------------------------------------------------------------------------------- Finished at 20180505-0312 Build needed 00:05:12, 1334296k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14837890 Scanning for processes to kill in build PACKAGEBUILD-14837890 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14837890 Stopping target for build PACKAGEBUILD-14837890 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14837890 Removing build PACKAGEBUILD-14837890