https://launchpad.net/ubuntu/+source/bali-phy/3.6.0+dfsg-1/+build/20995611 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-008 4.15.0-135-generic #139-Ubuntu SMP Mon Jan 18 17:37:53 UTC 2021 s390x Buildd toolchain package versions: launchpad-buildd_194~476~ubuntu18.04.1 python3-lpbuildd_194~476~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 7 Feb 17:15:20 ntpdate[1728]: adjust time server 10.211.37.1 offset -0.002967 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20995611 --image-type chroot /home/buildd/filecache-default/9aaab3d1c3367126bc5b66d2474faf9141147628 Creating target for build PACKAGEBUILD-20995611 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20995611 Starting target for build PACKAGEBUILD-20995611 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20995611 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20995611 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20995611 Updating target for build PACKAGEBUILD-20995611 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main s390x Packages [1331 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe s390x Packages [12.4 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5437 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x Packages [144 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [54.2 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x Packages [715 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [379 kB] Fetched 21.6 MB in 4s (4923 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-11-base libisl23 libperl5.32 libxxhash0 lto-disabled-list perl-modules-5.32 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils ca-certificates coreutils cpp-10 dash dpkg dpkg-dev e2fsprogs fakeroot g++-10 gcc-10 gcc-10-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libasan6 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libitm1 libjson-c5 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblockfile-bin liblockfile1 liblz4-1 libmount1 libmpc3 libncurses6 libncursesw6 libnettle8 libnpth0 libp11-kit0 libpcre2-8-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave mount ncurses-base ncurses-bin openssl passwd patch perl perl-base readline-common sensible-utils systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata util-linux 125 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. Need to get 80.4 MB of archives. After this operation, 44.5 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main s390x libcrypt-dev s390x 1:4.4.17-1ubuntu1 [111 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc6-dev s390x 2.33-0ubuntu2 [1735 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc-dev-bin s390x 2.33-0ubuntu2 [18.7 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main s390x libcrypt1 s390x 1:4.4.17-1ubuntu1 [84.3 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x linux-libc-dev s390x 5.10.0-14.15 [1178 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main s390x libtirpc-common all 1.3.1-1 [7452 B] Get:7 http://ftpmaster.internal/ubuntu hirsute/main s390x libk5crypto3 s390x 1.18.3-4 [77.0 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main s390x libgssapi-krb5-2 s390x 1.18.3-4 [122 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main s390x libkrb5-3 s390x 1.18.3-4 [368 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main s390x libkrb5support0 s390x 1.18.3-4 [31.4 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libcom-err2 s390x 1.45.7-1ubuntu1 [10.4 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main s390x libssl1.1 s390x 1.1.1f-1ubuntu5 [1044 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main s390x libtirpc-dev s390x 1.3.1-1 [190 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main s390x libtirpc3 s390x 1.3.1-1 [75.1 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc6 s390x 2.33-0ubuntu2 [2328 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc-bin s390x 2.33-0ubuntu2 [586 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main s390x gcc-11-base s390x 11-20210203-0ubuntu1 [19.2 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main s390x libgcc-s1 s390x 11-20210203-0ubuntu1 [25.6 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main s390x base-files s390x 11ubuntu16 [60.4 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main s390x bash s390x 5.1-1ubuntu1 [751 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main s390x bsdutils s390x 1:2.36.1-1ubuntu2 [85.9 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main s390x coreutils s390x 8.32-4ubuntu2 [1459 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main s390x tar s390x 1.32+dfsg-1 [307 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main s390x dpkg s390x 1.20.7.1ubuntu2 [1263 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main s390x dash s390x 0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 [112 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main s390x grep s390x 3.6-1 [161 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main s390x gzip s390x 1.10-2ubuntu3 [101 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main s390x login s390x 1:4.8.1-1ubuntu8 [219 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main s390x libncurses6 s390x 6.2+20201114-2 [106 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main s390x libncursesw6 s390x 6.2+20201114-2 [136 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main s390x libtinfo6 s390x 6.2+20201114-2 [92.4 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main s390x ncurses-bin s390x 6.2+20201114-2 [176 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x perl-modules-5.32 all 5.32.1-2 [2755 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libperl5.32 s390x 5.32.1-2 [3946 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x perl s390x 5.32.1-2 [225 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x perl-base s390x 5.32.1-2 [1572 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main s390x libgdbm6 s390x 1.19-2 [28.1 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main s390x libgdbm-compat4 s390x 1.19-2 [6320 B] Get:39 http://ftpmaster.internal/ubuntu hirsute/main s390x util-linux s390x 2.36.1-1ubuntu2 [1072 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main s390x libdebconfclient0 s390x 0.256ubuntu1 [6076 B] Get:41 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x base-passwd s390x 3.5.49 [48.6 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main s390x init-system-helpers all 1.60 [37.8 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main s390x ncurses-base all 6.2+20201114-2 [18.4 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main s390x sysvinit-utils s390x 2.96-5ubuntu1 [20.6 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main s390x libxxhash0 s390x 0.8.0-2 [18.3 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main s390x libgcrypt20 s390x 1.8.7-2ubuntu1 [393 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main s390x liblz4-1 s390x 1.9.3-0ubuntu1 [57.8 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main s390x libstdc++6 s390x 11-20210203-0ubuntu1 [585 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main s390x systemd-sysv s390x 247.1-4ubuntu1 [10.3 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libaudit-common all 1:3.0-2ubuntu1 [4836 B] Get:51 http://ftpmaster.internal/ubuntu hirsute/main s390x libcap-ng0 s390x 0.7.9-2.2build1 [11.0 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libaudit1 s390x 1:3.0-2ubuntu1 [39.6 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main s390x libpcre2-8-0 s390x 10.35-2ubuntu1 [110 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main s390x libselinux1 s390x 3.1-2build2 [74.9 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main s390x libsemanage-common all 3.1-1build2 [10.0 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main s390x libsemanage1 s390x 3.1-1build2 [88.5 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main s390x passwd s390x 1:4.8.1-1ubuntu8 [794 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main s390x adduser all 3.118ubuntu5 [156 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main s390x systemd-timesyncd s390x 247.1-4ubuntu1 [27.1 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main s390x libapparmor1 s390x 3.0.0-0ubuntu5 [35.9 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main s390x libblkid1 s390x 2.36.1-1ubuntu2 [128 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main s390x libudev1 s390x 247.1-4ubuntu1 [75.0 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main s390x libdevmapper1.02.1 s390x 2:1.02.167-1ubuntu4 [122 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main s390x libjson-c5 s390x 0.15-2 [33.0 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main s390x libuuid1 s390x 2.36.1-1ubuntu2 [21.6 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main s390x libcryptsetup12 s390x 2:2.3.4-1ubuntu1 [184 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main s390x libnettle8 s390x 3.7-2 [155 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main s390x libhogweed6 s390x 3.7-2 [194 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main s390x libidn2-0 s390x 2.3.0-5 [51.2 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main s390x libp11-kit0 s390x 0.23.22-1 [210 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main s390x libgnutls30 s390x 3.7.0-5ubuntu1 [826 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main s390x libip4tc2 s390x 1.8.5-3ubuntu4 [20.0 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libkmod2 s390x 28-1ubuntu1 [45.6 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main s390x libseccomp2 s390x 2.4.3-1ubuntu6 [55.9 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main s390x mount s390x 2.36.1-1ubuntu2 [119 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main s390x systemd s390x 247.1-4ubuntu1 [4015 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main s390x libsystemd0 s390x 247.1-4ubuntu1 [296 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main s390x libzstd1 s390x 1.4.8+dfsg-1 [312 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main s390x libapt-pkg6.0 s390x 2.1.18 [897 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main s390x gpgv s390x 2.2.20-1ubuntu2 [218 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main s390x apt s390x 2.1.18 [1306 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x logsave s390x 1.45.7-1ubuntu1 [11.1 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libext2fs2 s390x 1.45.7-1ubuntu1 [194 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x e2fsprogs s390x 1.45.7-1ubuntu1 [535 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main s390x init s390x 1.60 [6040 B] Get:86 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libacl1 s390x 2.2.53-10 [17.5 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main s390x libattr1 s390x 1:2.4.48-6 [12.8 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main s390x libmount1 s390x 2.36.1-1ubuntu2 [142 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main s390x libsmartcols1 s390x 2.36.1-1ubuntu2 [94.2 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/main s390x libgomp1 s390x 11-20210203-0ubuntu1 [99.4 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/main s390x libitm1 s390x 11-20210203-0ubuntu1 [25.7 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute/main s390x libatomic1 s390x 11-20210203-0ubuntu1 [8388 B] Get:93 http://ftpmaster.internal/ubuntu hirsute/main s390x libasan6 s390x 10.2.1-18ubuntu2 [2278 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/main s390x libubsan1 s390x 10.2.1-18ubuntu2 [906 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main s390x g++-10 s390x 10.2.1-18ubuntu2 [8815 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main s390x gcc-10 s390x 10.2.1-18ubuntu2 [15.1 MB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main s390x libstdc++-10-dev s390x 10.2.1-18ubuntu2 [1735 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute/main s390x libgcc-10-dev s390x 10.2.1-18ubuntu2 [774 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main s390x libisl23 s390x 0.23-1 [689 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main s390x libmpc3 s390x 1.2.0-1 [43.6 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main s390x libcc1-0 s390x 11-20210203-0ubuntu1 [46.3 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libctf0 s390x 2.36-2ubuntu3 [108 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libctf-nobfd0 s390x 2.36-2ubuntu3 [110 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils-s390x-linux-gnu s390x 2.36-2ubuntu3 [1779 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libbinutils s390x 2.36-2ubuntu3 [442 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils s390x 2.36-2ubuntu3 [3336 B] Get:107 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils-common s390x 2.36-2ubuntu3 [216 kB] Get:108 http://ftpmaster.internal/ubuntu hirsute/main s390x cpp-10 s390x 10.2.1-18ubuntu2 [7439 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/main s390x gcc-10-base s390x 10.2.1-18ubuntu2 [20.4 kB] Get:110 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libss2 s390x 1.45.7-1ubuntu1 [11.2 kB] Get:111 http://ftpmaster.internal/ubuntu hirsute/main s390x sensible-utils all 0.0.14 [13.5 kB] Get:112 http://ftpmaster.internal/ubuntu hirsute/main s390x openssl s390x 1.1.1f-1ubuntu5 [615 kB] Get:113 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x ca-certificates all 20210119 [147 kB] Get:114 http://ftpmaster.internal/ubuntu hirsute/main s390x libcap2 s390x 1:2.44-1 [18.3 kB] Get:115 http://ftpmaster.internal/ubuntu hirsute/main s390x readline-common all 8.1-1 [54.1 kB] Get:116 http://ftpmaster.internal/ubuntu hirsute/main s390x libreadline8 s390x 8.1-1 [143 kB] Get:117 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libsqlite3-0 s390x 3.34.1-1 [651 kB] Get:118 http://ftpmaster.internal/ubuntu hirsute/main s390x tzdata all 2021a-1ubuntu1 [294 kB] Get:119 http://ftpmaster.internal/ubuntu hirsute/main s390x dpkg-dev all 1.20.7.1ubuntu2 [935 kB] Get:120 http://ftpmaster.internal/ubuntu hirsute/main s390x libdpkg-perl all 1.20.7.1ubuntu2 [233 kB] Get:121 http://ftpmaster.internal/ubuntu hirsute/main s390x patch s390x 2.7.6-7 [114 kB] Get:122 http://ftpmaster.internal/ubuntu hirsute/main s390x lto-disabled-list all 1 [1996 B] Get:123 http://ftpmaster.internal/ubuntu hirsute/main s390x libfakeroot s390x 1.25.3-1.1 [27.5 kB] Get:124 http://ftpmaster.internal/ubuntu hirsute/main s390x fakeroot s390x 1.25.3-1.1 [62.7 kB] Get:125 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libassuan0 s390x 2.5.4-1 [33.3 kB] Get:126 http://ftpmaster.internal/ubuntu hirsute/main s390x libnpth0 s390x 1.6-3 [8048 B] Get:127 http://ftpmaster.internal/ubuntu hirsute/main s390x gpg s390x 2.2.20-1ubuntu2 [511 kB] Get:128 http://ftpmaster.internal/ubuntu hirsute/main s390x gpgconf s390x 2.2.20-1ubuntu2 [138 kB] Get:129 http://ftpmaster.internal/ubuntu hirsute/main s390x gpg-agent s390x 2.2.20-1ubuntu2 [256 kB] Get:130 http://ftpmaster.internal/ubuntu hirsute/main s390x liblockfile-bin s390x 1.17-1 [11.7 kB] Get:131 http://ftpmaster.internal/ubuntu hirsute/main s390x liblockfile1 s390x 1.17-1 [6612 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 80.4 MB in 2s (35.9 MB/s) (Reading database ... 12766 files and directories currently installed.) 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Setting up libsqlite3-0:s390x (3.34.1-1) ... Setting up binutils-common:s390x (2.36-2ubuntu3) ... Setting up linux-libc-dev:s390x (5.10.0-14.15) ... Setting up libctf-nobfd0:s390x (2.36-2ubuntu3) ... Setting up libnpth0:s390x (1.6-3) ... Setting up libassuan0:s390x (2.5.4-1) ... Setting up libgomp1:s390x (11-20210203-0ubuntu1) ... Setting up libcap2:s390x (1:2.44-1) ... Setting up libfakeroot:s390x (1.25.3-1.1) ... Setting up libkrb5support0:s390x (1.18.3-4) ... Setting up tzdata (2021a-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Feb 7 17:15:46 UTC 2021. Universal Time is now: Sun Feb 7 17:15:46 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1.1) ... Setting up gcc-10-base:s390x (10.2.1-18ubuntu2) ... Setting up libncurses6:s390x (6.2+20201114-2) ... Setting up libmpc3:s390x (1.2.0-1) ... Setting up libatomic1:s390x (11-20210203-0ubuntu1) ... Setting up patch (2.7.6-7) ... Setting up libss2:s390x (1.45.7-1ubuntu1) ... Setting up libncursesw6:s390x (6.2+20201114-2) ... Setting up libk5crypto3:s390x (1.18.3-4) ... Setting up logsave (1.45.7-1ubuntu1) ... Setting up libubsan1:s390x (10.2.1-18ubuntu2) ... Setting up sensible-utils (0.0.14) ... Setting up libcrypt-dev:s390x (1:4.4.17-1ubuntu1) ... Setting up libkrb5-3:s390x (1.18.3-4) ... Setting up liblockfile1:s390x (1.17-1) ... Setting up libbinutils:s390x (2.36-2ubuntu3) ... Setting up libisl23:s390x (0.23-1) ... Setting up libc-dev-bin (2.33-0ubuntu2) ... Setting up openssl (1.1.1f-1ubuntu5) ... Setting up readline-common (8.1-1) ... Setting up libcc1-0:s390x (11-20210203-0ubuntu1) ... Setting up cpp-10 (10.2.1-18ubuntu2) ... Setting up libitm1:s390x (11-20210203-0ubuntu1) ... Setting up libgdbm6:s390x (1.19-2) ... Setting up libctf0:s390x (2.36-2ubuntu3) ... Setting up binutils-s390x-linux-gnu (2.36-2ubuntu3) ... Setting up libreadline8:s390x (8.1-1) ... Setting up e2fsprogs (1.45.7-1ubuntu1) ... Setting up binutils (2.36-2ubuntu3) ... Setting up libasan6:s390x (10.2.1-18ubuntu2) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 10 added, 7 removed; done. Setting up libgssapi-krb5-2:s390x (1.18.3-4) ... Setting up libgdbm-compat4:s390x (1.19-2) ... Setting up libperl5.32:s390x (5.32.1-2) ... Setting up gpgconf (2.2.20-1ubuntu2) ... Setting up gpg (2.2.20-1ubuntu2) ... Setting up libtirpc3:s390x (1.3.1-1) ... Setting up gpg-agent (2.2.20-1ubuntu2) ... Setting up libgcc-10-dev:s390x (10.2.1-18ubuntu2) ... Setting up perl (5.32.1-2) ... Setting up libtirpc-dev:s390x (1.3.1-1) ... Setting up gcc-10 (10.2.1-18ubuntu2) ... Setting up libdpkg-perl (1.20.7.1ubuntu2) ... Setting up libc6-dev:s390x (2.33-0ubuntu2) ... Setting up libstdc++-10-dev:s390x (10.2.1-18ubuntu2) ... Setting up g++-10 (10.2.1-18ubuntu2) ... Setting up dpkg-dev (1.20.7.1ubuntu2) ... Processing triggers for libc-bin (2.33-0ubuntu2) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20995611 s390x hirsute-proposed -c chroot:build-PACKAGEBUILD-20995611 --arch=s390x --dist=hirsute-proposed --nolog bali-phy_3.6.0+dfsg-1.dsc Initiating build PACKAGEBUILD-20995611 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-135-generic #139-Ubuntu SMP Mon Jan 18 17:37:53 UTC 2021 s390x sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-s390x-008.buildd +==============================================================================+ | bali-phy 3.6.0+dfsg-1 (s390x) Sun, 07 Feb 2021 17:15:49 +0000 | +==============================================================================+ Package: bali-phy Version: 3.6.0+dfsg-1 Source Version: 3.6.0+dfsg-1 Distribution: hirsute-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20995611/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- bali-phy_3.6.0+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/bali-phy-lvpYti/bali-phy-3.6.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/bali-phy-lvpYti' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-jRluS9/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-jRluS9/apt_archive ./ InRelease Get:2 copy:/<>/resolver-jRluS9/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-jRluS9/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-jRluS9/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-jRluS9/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (153 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-jRluS9/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14773 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), meson (>= 0.53), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev Filtered Build-Depends: debhelper-compat (= 13), meson (>= 0.53), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev dpkg-deb: building package 'sbuild-build-depends-bali-phy-dummy' in '/<>/resolver-jRluS9/apt_archive/sbuild-build-depends-bali-phy-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-bali-phy-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-jRluS9/apt_archive ./ InRelease Get:2 copy:/<>/resolver-jRluS9/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-jRluS9/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-jRluS9/apt_archive ./ Sources [589 B] Get:5 copy:/<>/resolver-jRluS9/apt_archive ./ Packages [668 B] Fetched 2220 B in 0s (0 B/s) Reading package lists... Reading package lists... Install bali-phy build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblkid-dev libboost-chrono-dev libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-program-options-dev libboost-program-options1.74-dev libboost-program-options1.74.0 libboost-random-dev libboost-random1.74-dev libboost-random1.74.0 libboost-system-dev libboost-system1.74-dev libboost-system1.74.0 libboost1.74-dev libbrotli-dev libbrotli1 libbsd0 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcmark-gfm-extensions0 libcmark-gfm0 libdebhelper-perl libeigen3-dev libelf1 libexpat1 libexpat1-dev libffi-dev libfile-stripnondeterminism-perl libfontconfig-dev libfontconfig1 libfontconfig1-dev libfreetype-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libice-dev libice6 libicu67 liblzo2-2 libmagic-mgc libmagic1 libmd0 libmount-dev libmpdec3 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libpthread-stubs0-dev libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librange-v3-dev libselinux1-dev libsepol1-dev libsigsegv2 libsm-dev libsm6 libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2 libxrender-dev libxrender1 m4 man-db media-types meson ninja-build nlohmann-json3-dev pandoc pandoc-data pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal ucf uuid-dev x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-python1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libcairo2-doc libeigen3-doc freetype2-doc libgirepository1.0-dev libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libice-doc libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc libxcb-doc libxext-doc m4-doc apparmor less www-browser texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc nodejs php python ruby r-base-core libjs-mathjax node-katex citation-style-language-styles libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python3.9-venv python3.9-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl shared-mime-info xdg-user-dirs libpng-tools librange-v3-doc libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblkid-dev libboost-chrono-dev libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-program-options-dev libboost-program-options1.74-dev libboost-program-options1.74.0 libboost-random-dev libboost-random1.74-dev libboost-random1.74.0 libboost-system-dev libboost-system1.74-dev libboost-system1.74.0 libboost1.74-dev libbrotli-dev libbrotli1 libbsd0 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcmark-gfm-extensions0 libcmark-gfm0 libdebhelper-perl libeigen3-dev libelf1 libexpat1 libexpat1-dev libffi-dev libfile-stripnondeterminism-perl libfontconfig-dev libfontconfig1 libfontconfig1-dev libfreetype-dev libfreetype6 libfreetype6-dev libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libice-dev libice6 libicu67 liblzo2-2 libmagic-mgc libmagic1 libmd0 libmount-dev libmpdec3 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libpthread-stubs0-dev libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librange-v3-dev libselinux1-dev libsepol1-dev libsigsegv2 libsm-dev libsm6 libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2 libxrender-dev libxrender1 m4 man-db media-types meson ninja-build nlohmann-json3-dev pandoc pandoc-data pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal sbuild-build-depends-bali-phy-dummy ucf uuid-dev x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 141 newly installed, 0 to remove and 0 not upgraded. Need to get 85.4 MB of archives. After this operation, 641 MB of additional disk space will be used. Get:1 copy:/<>/resolver-jRluS9/apt_archive ./ sbuild-build-depends-bali-phy-dummy 0.invalid.0 [952 B] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libpython3.9-minimal s390x 3.9.1-4 [749 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main s390x libexpat1 s390x 2.2.10-1 [86.5 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x python3.9-minimal s390x 3.9.1-4 [1892 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x python3-minimal s390x 3.9.1-1 [24.0 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main s390x media-types all 4.0.0 [22.2 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main s390x libmpdec3 s390x 2.5.1-1 [91.9 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libpython3.9-stdlib s390x 3.9.1-4 [1653 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x python3.9 s390x 3.9.1-4 [418 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libpython3-stdlib s390x 3.9.1-1 [7244 B] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x python3 s390x 3.9.1-1 [48.8 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main s390x bsdextrautils s390x 2.36.1-1ubuntu2 [77.5 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main s390x libuchardet0 s390x 0.0.7-1 [67.5 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main s390x groff-base s390x 1.22.4-6 [912 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main s390x libpipeline1 s390x 1.5.3-1 [28.7 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main s390x man-db s390x 2.9.3-2 [1106 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main s390x libmagic-mgc s390x 1:5.39-3 [229 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main s390x libmagic1 s390x 1:5.39-3 [83.6 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main s390x file s390x 1:5.39-3 [24.0 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/universe s390x libmd0 s390x 1.0.3-1 [21.1 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libbsd0 s390x 0.11.1-1 [42.5 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libelf1 s390x 0.182+20210205-1 [48.1 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libglib2.0-0 s390x 2.66.6-1 [1322 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libglib2.0-data all 2.66.6-1 [5216 B] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libicu67 s390x 67.1-6ubuntu1 [8469 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main s390x libxml2 s390x 2.9.10+dfsg-6.3build1 [645 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x python3-pkg-resources all 52.0.0-1 [129 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main s390x ucf all 3.0043 [56.1 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main s390x gettext-base s390x 0.21-3ubuntu2 [41.0 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main s390x libxau6 s390x 1:1.0.9-0ubuntu1 [7212 B] Get:31 http://ftpmaster.internal/ubuntu hirsute/main s390x libxdmcp6 s390x 1:1.1.3-0ubuntu1 [10.4 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main s390x libxcb1 s390x 1.14-2.1 [45.0 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main s390x libx11-data all 2:1.7.0-2 [112 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main s390x libx11-6 s390x 2:1.7.0-2 [571 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main s390x libxext6 s390x 2:1.3.4-0ubuntu1 [27.0 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main s390x libsigsegv2 s390x 2.13-1 [14.2 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main s390x m4 s390x 1.4.18-5 [209 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main s390x autoconf all 2.69-14 [293 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main s390x autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main s390x automake all 1:1.16.3-2ubuntu1 [552 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main s390x autopoint all 0.21-3ubuntu2 [422 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main s390x libdebhelper-perl all 13.3.1ubuntu1 [62.2 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main s390x libtool all 2.4.6-15 [161 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x dh-autoreconf all 20 [16.1 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:47 http://ftpmaster.internal/ubuntu hirsute/main s390x libfile-stripnondeterminism-perl all 1.11.0-1 [17.0 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main s390x dh-strip-nondeterminism all 1.11.0-1 [5236 B] Get:49 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x dwz s390x 0.13+20210201-1 [169 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main s390x gettext s390x 0.21-3ubuntu2 [869 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main s390x po-debconf all 1.0.21+nmu1 [233 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main s390x debhelper all 13.3.1ubuntu1 [882 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main s390x fonts-dejavu-core all 2.37-2 [1041 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main s390x fontconfig-config all 2.13.1-4.2ubuntu2 [28.6 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libboost1.74-dev s390x 1.74.0-3ubuntu4 [9507 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libboost-chrono1.74.0 s390x 1.74.0-3ubuntu4 [225 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libboost-chrono1.74-dev s390x 1.74.0-3ubuntu4 [229 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x libboost-chrono-dev s390x 1.74.0.3ubuntu3 [3860 B] Get:60 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2.13.1-4.2ubuntu2 [152 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main s390x libpixman-1-0 s390x 0.40.0-1 [154 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main s390x libxcb-render0 s390x 1.14-2.1 [14.7 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main s390x libxcb-shm0 s390x 1.14-2.1 [5436 B] Get:80 http://ftpmaster.internal/ubuntu hirsute/main s390x libxrender1 s390x 1:0.9.10-1 [17.8 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main s390x libcairo2 s390x 1.16.0-5 [655 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main s390x libcairo-gobject2 s390x 1.16.0-5 [17.2 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main s390x liblzo2-2 s390x 2.10-2 [46.5 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main s390x libcairo-script-interpreter2 s390x 1.16.0-5 [59.2 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main s390x libexpat1-dev s390x 2.2.10-1 [130 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2ubuntu4 [166 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main s390x libpng-dev s390x 1.6.37-3 [188 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main s390x libfreetype-dev s390x 2.10.4+dfsg-1 [535 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main s390x libfreetype6-dev s390x 2.10.4+dfsg-1 [9816 B] Get:90 http://ftpmaster.internal/ubuntu hirsute/main s390x uuid-dev s390x 2.36.1-1ubuntu2 [36.5 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/main s390x pkg-config s390x 0.29.2-1ubuntu1 [45.0 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute/main s390x libfontconfig-dev s390x 2.13.1-4.2ubuntu2 [179 kB] Get:93 http://ftpmaster.internal/ubuntu hirsute/main s390x libfontconfig1-dev s390x 2.13.1-4.2ubuntu2 [2028 B] Get:94 http://ftpmaster.internal/ubuntu hirsute/main s390x xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main s390x x11proto-dev all 2020.1-1 [594 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main s390x x11proto-core-dev all 2020.1-1 [2620 B] Get:97 http://ftpmaster.internal/ubuntu hirsute/main s390x libxau-dev s390x 1:1.0.9-0ubuntu1 [9328 B] Get:98 http://ftpmaster.internal/ubuntu hirsute/main s390x libxdmcp-dev s390x 1:1.1.3-0ubuntu1 [25.3 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main s390x xtrans-dev all 1.4.0-1 [68.9 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main s390x libpthread-stubs0-dev s390x 0.4-1 [5384 B] Get:101 http://ftpmaster.internal/ubuntu hirsute/main s390x libxcb1-dev s390x 1.14-2.1 [81.9 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/main s390x libx11-dev s390x 2:1.7.0-2 [652 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute/main s390x libxrender-dev s390x 1:0.9.10-1 [24.1 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/main s390x x11proto-xext-dev all 2020.1-1 [2620 B] Get:105 http://ftpmaster.internal/ubuntu hirsute/main s390x libxext-dev s390x 2:1.3.4-0ubuntu1 [80.2 kB] Get:106 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[72.5 kB] Get:116 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x python3-lib2to3 all 3.9.1-1ubuntu1 [75.5 kB] Get:117 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x python3-distutils all 3.9.1-1ubuntu1 [140 kB] Get:118 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libglib2.0-dev-bin s390x 2.66.6-1 [110 kB] Get:119 http://ftpmaster.internal/ubuntu hirsute/main s390x libblkid-dev s390x 2.36.1-1ubuntu2 [163 kB] Get:120 http://ftpmaster.internal/ubuntu hirsute/main s390x libsepol1-dev s390x 3.1-1 [305 kB] Get:121 http://ftpmaster.internal/ubuntu hirsute/main s390x libpcre2-16-0 s390x 10.35-2ubuntu1 [104 kB] Get:122 http://ftpmaster.internal/ubuntu hirsute/main s390x libpcre2-32-0 s390x 10.35-2ubuntu1 [97.2 kB] Get:123 http://ftpmaster.internal/ubuntu hirsute/main s390x libpcre2-posix2 s390x 10.35-2ubuntu1 [5876 B] Get:124 http://ftpmaster.internal/ubuntu hirsute/main s390x libpcre2-dev s390x 10.35-2ubuntu1 [492 kB] Get:125 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s390x 0.29.0.gfm.0-6 [23.2 kB] Get:135 http://ftpmaster.internal/ubuntu hirsute/universe s390x librange-v3-dev all 0.11.0-1 [214 kB] Get:136 http://ftpmaster.internal/ubuntu hirsute/universe s390x ninja-build s390x 1.10.1-1 [124 kB] Get:137 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x meson all 0.56.2-1 [433 kB] Get:138 http://ftpmaster.internal/ubuntu hirsute/universe s390x nlohmann-json3-dev all 3.9.1-1 [606 kB] Get:139 http://ftpmaster.internal/ubuntu hirsute/universe s390x pandoc-data all 2.9.2.1-1ubuntu3 [78.5 kB] Get:140 http://ftpmaster.internal/ubuntu hirsute/universe s390x pandoc s390x 2.9.2.1-1ubuntu3 [36.9 MB] Get:141 http://ftpmaster.internal/ubuntu hirsute/universe s390x libeigen3-dev all 3.3.9-2 [817 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 85.4 MB in 2s (37.1 MB/s) Selecting previously unselected package libpython3.9-minimal:s390x. (Reading database ... 14773 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.1-4_s390x.deb ... Unpacking libpython3.9-minimal:s390x (3.9.1-4) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../libexpat1_2.2.10-1_s390x.deb ... Unpacking libexpat1:s390x (2.2.10-1) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.1-4_s390x.deb ... Unpacking python3.9-minimal (3.9.1-4) ... Setting up libpython3.9-minimal:s390x (3.9.1-4) ... Setting up libexpat1:s390x (2.2.10-1) ... Setting up python3.9-minimal (3.9.1-4) ... Selecting previously unselected package python3-minimal. (Reading database ... 15066 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.1-1_s390x.deb ... Unpacking python3-minimal (3.9.1-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... 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Setting up libpipeline1:s390x (1.5.3-1) ... Setting up libboost-system1.74.0:s390x (1.74.0-3ubuntu4) ... Setting up libpixman-1-0:s390x (0.40.0-1) ... Setting up libxau6:s390x (1:1.0.9-0ubuntu1) ... Setting up libboost1.74-dev:s390x (1.74.0-3ubuntu4) ... Setting up libpixman-1-dev:s390x (0.40.0-1) ... Setting up bsdextrautils (2.36.1-1ubuntu2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libpcre16-3:s390x (2:8.39-13) ... Setting up libicu67:s390x (67.1-6ubuntu1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:s390x (2.66.6-1) ... No schema files found: doing nothing. Setting up libboost-program-options1.74.0:s390x (1.74.0-3ubuntu4) ... Setting up libdebhelper-perl (13.3.1ubuntu1) ... Setting up libbrotli1:s390x (1.0.9-2build2) ... Setting up libboost-chrono1.74-dev:s390x (1.74.0-3ubuntu4) ... Setting up x11-common (1:7.7+19ubuntu15) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:s390x (1:5.39-3) ... Setting up libsepol1-dev:s390x (3.1-1) ... Setting up gettext-base (0.21-3ubuntu2) ... Setting up liblzo2-2:s390x (2.10-2) ... Setting up libboost-filesystem1.74.0:s390x (1.74.0-3ubuntu4) ... Setting up file (1:5.39-3) ... Setting up libffi-dev:s390x (3.4~20200819gead65ca871-0ubuntu3) ... Setting up libpthread-stubs0-dev:s390x (0.4-1) ... Setting up libpcre2-16-0:s390x (10.35-2ubuntu1) ... Setting up ninja-build (1.10.1-1) ... Setting up libboost-program-options1.74-dev:s390x (1.74.0-3ubuntu4) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libpcre2-32-0:s390x (10.35-2ubuntu1) ... Setting up libglib2.0-data (2.66.6-1) ... Setting up libexpat1-dev:s390x (2.2.10-1) ... 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Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up x11proto-xext-dev (2020.1-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libx11-6:s390x (2:1.7.0-2) ... Setting up libfontconfig1:s390x (2.13.1-4.2ubuntu2) ... Setting up libsm6:s390x (2:1.2.3-1) ... Setting up libmount-dev:s390x (2.36.1-1ubuntu2) ... Setting up python3.9 (3.9.1-4) ... Setting up automake (1:1.16.3-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb1-dev:s390x (1.14-2.1) ... Setting up libxrender1:s390x (1:0.9.10-1) ... Setting up libsm-dev:s390x (2:1.2.3-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libx11-dev:s390x (2:1.7.0-2) ... Setting up libxext6:s390x (2:1.3.4-0ubuntu1) ... Setting up libboost-random-dev:s390x (1.74.0.3ubuntu3) ... Setting up python3 (3.9.1-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:s390x (1.16.0-5) ... Setting up libfreetype6-dev:s390x (2.10.4+dfsg-1) ... Setting up dh-autoreconf (20) ... Setting up libxcb-shm0-dev:s390x (1.14-2.1) ... Setting up libxcb-render0-dev:s390x (1.14-2.1) ... Setting up libxext-dev:s390x (2:1.3.4-0ubuntu1) ... Setting up libcairo-gobject2:s390x (1.16.0-5) ... Setting up python3-lib2to3 (3.9.1-1ubuntu1) ... Setting up libxrender-dev:s390x (1:0.9.10-1) ... Setting up python3-pkg-resources (52.0.0-1) ... Setting up python3-distutils (3.9.1-1ubuntu1) ... Setting up libcairo-script-interpreter2:s390x (1.16.0-5) ... Setting up libglib2.0-dev-bin (2.66.6-1) ... Setting up libfontconfig-dev:s390x (2.13.1-4.2ubuntu2) ... Setting up meson (0.56.2-1) ... Setting up debhelper (13.3.1ubuntu1) ... Setting up libglib2.0-dev:s390x (2.66.6-1) ... Setting up libcairo2-dev:s390x (1.16.0-5) ... Setting up libfontconfig1-dev:s390x (2.13.1-4.2ubuntu2) ... Setting up sbuild-build-depends-bali-phy-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.33-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-135-generic s390x (s390x) Toolchain package versions: binutils_2.36-2ubuntu3 dpkg-dev_1.20.7.1ubuntu2 g++-10_10.2.1-18ubuntu2 gcc-10_10.2.1-18ubuntu2 libc6-dev_2.33-0ubuntu2 libstdc++-10-dev_10.2.1-18ubuntu2 libstdc++6_11-20210203-0ubuntu1 linux-libc-dev_5.10.0-14.15 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1build1 apt_2.1.18 autoconf_2.69-14 automake_1:1.16.3-2ubuntu1 autopoint_0.21-3ubuntu2 autotools-dev_20180224.1+nmu1 base-files_11ubuntu16 base-passwd_3.5.49 bash_5.1-1ubuntu1 binutils_2.36-2ubuntu3 binutils-common_2.36-2ubuntu3 binutils-s390x-linux-gnu_2.36-2ubuntu3 bsdextrautils_2.36.1-1ubuntu2 bsdutils_1:2.36.1-1ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20210119 coreutils_8.32-4ubuntu2 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.1-18ubuntu2 dash_0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 debconf_1.5.74 debhelper_13.3.1ubuntu1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.7.1ubuntu2 dpkg-dev_1.20.7.1ubuntu2 dwz_0.13+20210201-1 e2fsprogs_1.45.7-1ubuntu1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.7.0-1ubuntu2 fontconfig-config_2.13.1-4.2ubuntu2 fonts-dejavu-core_2.37-2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.1-18ubuntu2 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.1-18ubuntu2 gcc-10-base_10.2.1-18ubuntu2 gcc-11-base_11-20210203-0ubuntu1 gettext_0.21-3ubuntu2 gettext-base_0.21-3ubuntu2 gpg_2.2.20-1ubuntu2 gpg-agent_2.2.20-1ubuntu2 gpgconf_2.2.20-1ubuntu2 gpgv_2.2.20-1ubuntu2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-2ubuntu3 hostname_3.23 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapparmor1_3.0.0-0ubuntu5 libapt-pkg6.0_2.1.18 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libbrotli1_1.0.9-2build2 libbsd0_0.11.1-1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.33-0ubuntu2 libc-dev-bin_2.33-0ubuntu2 libc6_2.33-0ubuntu2 libc6-dev_2.33-0ubuntu2 libcairo-gobject2_1.16.0-5 libcairo-script-interpreter2_1.16.0-5 libcairo2_1.16.0-5 libcairo2-dev_1.16.0-5 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1 libcc1-0_11-20210203-0ubuntu1 libcmark-gfm-extensions0_0.29.0.gfm.0-6 libcmark-gfm0_0.29.0.gfm.0-6 libcom-err2_1.45.7-1ubuntu1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.4-1ubuntu1 libctf-nobfd0_2.36-2ubuntu3 libctf0_2.36-2ubuntu3 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.256ubuntu1 libdebhelper-perl_13.3.1ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu4 libdpkg-perl_1.20.7.1ubuntu2 libeigen3-dev_3.3.9-2 libelf1_0.182+20210205-1 libexpat1_2.2.10-1 libexpat1-dev_2.2.10-1 libext2fs2_1.45.7-1ubuntu1 libfakeroot_1.25.3-1.1 libffi-dev_3.4~20200819gead65ca871-0ubuntu3 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.11.0-1 libfontconfig-dev_2.13.1-4.2ubuntu2 libfontconfig1_2.13.1-4.2ubuntu2 libfontconfig1-dev_2.13.1-4.2ubuntu2 libfreetype-dev_2.10.4+dfsg-1 libfreetype6_2.10.4+dfsg-1 libfreetype6-dev_2.10.4+dfsg-1 libgcc-10-dev_10.2.1-18ubuntu2 libgcc-s1_11-20210203-0ubuntu1 libgcrypt20_1.8.7-2ubuntu1 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libglib2.0-0_2.66.6-1 libglib2.0-bin_2.66.6-1 libglib2.0-data_2.66.6-1 libglib2.0-dev_2.66.6-1 libglib2.0-dev-bin_2.66.6-1 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.7.0-5ubuntu1 libgomp1_11-20210203-0ubuntu1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed6_3.7-2 libice-dev_2:1.0.10-1 libice6_2:1.0.10-1 libicu67_67.1-6ubuntu1 libidn2-0_2.3.0-5 libip4tc2_1.8.5-3ubuntu4 libisl22_0.22.1-1 libisl23_0.23-1 libitm1_11-20210203-0ubuntu1 libjson-c5_0.15-2 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2ubuntu1 libkmod2_28-1ubuntu1 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 liblockfile-bin_1.17-1 liblockfile1_1.17-1 liblz4-1_1.9.3-0ubuntu1 liblzma5_5.2.4-1ubuntu1 liblzo2-2_2.10-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.3-1 libmount-dev_2.36.1-1ubuntu2 libmount1_2.36.1-1ubuntu2 libmpc3_1.2.0-1 libmpdec3_2.5.1-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle8_3.7-2 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre16-3_2:8.39-13 libpcre2-16-0_10.35-2ubuntu1 libpcre2-32-0_10.35-2ubuntu1 libpcre2-8-0_10.35-2ubuntu1 libpcre2-dev_10.35-2ubuntu1 libpcre2-posix2_10.35-2ubuntu1 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.30_5.30.3-4 libperl5.32_5.32.1-2 libpipeline1_1.5.3-1 libpixman-1-0_0.40.0-1 libpixman-1-dev_0.40.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libpthread-stubs0-dev_0.4-1 libpython3-stdlib_3.9.1-1 libpython3.9-minimal_3.9.1-4 libpython3.9-stdlib_3.9.1-4 librange-v3-dev_0.11.0-1 libreadline8_8.1-1 libseccomp2_2.4.3-1ubuntu6 libselinux1_3.1-2build2 libselinux1-dev_3.1-2build2 libsemanage-common_3.1-1build2 libsemanage1_3.1-1build2 libsepol1_3.1-1 libsepol1-dev_3.1-1 libsigsegv2_2.13-1 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.36.1-1ubuntu2 libsqlite3-0_3.34.1-1 libss2_1.45.7-1ubuntu1 libssl1.1_1.1.1f-1ubuntu5 libstdc++-10-dev_10.2.1-18ubuntu2 libstdc++6_11-20210203-0ubuntu1 libsub-override-perl_0.09-2 libsystemd0_247.1-4ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_10.2.1-18ubuntu2 libuchardet0_0.0.7-1 libudev1_247.1-4ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36.1-1ubuntu2 libx11-6_2:1.7.0-2 libx11-data_2:1.7.0-2 libx11-dev_2:1.7.0-2 libxau-dev_1:1.0.9-0ubuntu1 libxau6_1:1.0.9-0ubuntu1 libxcb-render0_1.14-2.1 libxcb-render0-dev_1.14-2.1 libxcb-shm0_1.14-2.1 libxcb-shm0-dev_1.14-2.1 libxcb1_1.14-2.1 libxcb1-dev_1.14-2.1 libxdmcp-dev_1:1.1.3-0ubuntu1 libxdmcp6_1:1.1.3-0ubuntu1 libxext-dev_2:1.3.4-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxml2_2.9.10+dfsg-6.3build1 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libxxhash0_0.8.0-2 libzstd1_1.4.8+dfsg-1 linux-libc-dev_5.10.0-14.15 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu8 logsave_1.45.7-1ubuntu1 lsb-base_11.1.0ubuntu2 lto-disabled-list_1 m4_1.4.18-5 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_4.0.0 meson_0.56.2-1 mount_2.36.1-1ubuntu2 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 ninja-build_1.10.1-1 nlohmann-json3-dev_3.9.1-1 openssl_1.1.1f-1ubuntu5 optipng_0.7.7-1 pandoc_2.9.2.1-1ubuntu3 pandoc-data_2.9.2.1-1ubuntu3 passwd_1:4.8.1-1ubuntu8 patch_2.7.6-7 perl_5.32.1-2 perl-base_5.32.1-2 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.1-2 pinentry-curses_1.1.0-4build1 pkg-config_0.29.2-1ubuntu1 pkgbinarymangler_146 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 python3_3.9.1-1 python3-distutils_3.9.1-1ubuntu1 python3-lib2to3_3.9.1-1ubuntu1 python3-minimal_3.9.1-1 python3-pkg-resources_52.0.0-1 python3.9_3.9.1-4 python3.9-minimal_3.9.1-4 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-bali-phy-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_247.1-4ubuntu1 systemd-sysv_247.1-4ubuntu1 systemd-timesyncd_247.1-4ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.32+dfsg-1 tzdata_2021a-1ubuntu1 ubuntu-keyring_2020.06.17.1 ucf_3.0043 util-linux_2.36.1-1ubuntu2 uuid-dev_2.36.1-1ubuntu2 x11-common_1:7.7+19ubuntu15 x11proto-core-dev_2020.1-1 x11proto-dev_2020.1-1 x11proto-xext-dev_2020.1-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Feb 7 07:51:21 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bali-phy_3.6.0+dfsg-1.dsc dpkg-source: info: extracting bali-phy in /<>/bali-phy-3.6.0+dfsg dpkg-source: info: unpacking bali-phy_3.6.0+dfsg.orig.tar.xz dpkg-source: info: unpacking bali-phy_3.6.0+dfsg-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20995611 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20995611 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20995611 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package bali-phy dpkg-buildpackage: info: source version 3.6.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules binary-arch dh binary-arch --buildsystem=meson dh_update_autotools_config -a -O--buildsystem=meson dh_autoreconf -a -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/bali-phy-3.6.0+dfsg' dh_auto_configure -- -Dextra-tools=false --buildtype=release -Db_ndebug=true cd obj-s390x-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/s390x-linux-gnu -Dextra-tools=false --buildtype=release -Db_ndebug=true The Meson build system Version: 0.56.2 Source dir: /<>/bali-phy-3.6.0+dfsg Build dir: /<>/bali-phy-3.6.0+dfsg/obj-s390x-linux-gnu Build type: native build Project name: bali-phy Project version: 3.6.0 Using 'CFLAGS' from environment with value: '-g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0' Using 'LDFLAGS' from environment with value: '-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' C compiler for the host machine: cc (gcc 10.2.1 "cc (Ubuntu 10.2.1-18ubuntu2) 10.2.1 20210130") C linker for the host machine: cc ld.bfd 2.36 Using 'CXXFLAGS' from environment with value: '-g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0' Using 'LDFLAGS' from environment with value: '-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' C++ compiler for the host machine: c++ (gcc 10.2.1 "c++ (Ubuntu 10.2.1-18ubuntu2) 10.2.1 20210130") C++ linker for the host machine: c++ ld.bfd 2.36 Using 'CFLAGS' from environment with value: '-g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0' Using 'LDFLAGS' from environment with value: '-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' Using 'CXXFLAGS' from environment with value: '-g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0' Using 'LDFLAGS' from environment with value: '-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' Host machine cpu family: s390x Host machine cpu: s390x Has header "sys/resource.h" : YES Has header "fenv.h" : YES Checking for function "log2" : YES Checking for function "feenableexcept" : YES Configuring config.h using configuration Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-maybe-uninitialized: YES Compiler for C++ supports arguments -Woverloaded-virtual: YES Compiler for C++ supports arguments -Wstrict-aliasing: YES Compiler for C++ supports arguments -Wno-unknown-pragmas: YES Compiler for C++ supports arguments -fdiagnostics-show-template-tree: YES Compiler for C++ supports arguments -funroll-loops: YES Compiler for C++ supports arguments -fno-math-errno: YES Compiler for C++ supports arguments -fno-signed-zeros: YES Run-time dependency threads found: YES Found pkg-config: /usr/bin/pkg-config (0.29.2) Run-time dependency cairo found: YES 1.16.0 Run-time dependency Boost (found: chrono, filesystem, program_options, random, system) found: YES 1.74.0 (/usr) Run-time dependency eigen3 found: YES 3.3.9 Has header "nlohmann/json.hpp" : YES Library dl found: YES Has header "range/v3/view/take.hpp" : YES Library m found: YES Program pandoc found: YES (/usr/bin/pandoc) Program /<>/bali-phy-3.6.0+dfsg/tests/run-tests.py found: YES (/<>/bali-phy-3.6.0+dfsg/tests/run-tests.py) Build targets in project: 87 bali-phy 3.6.0 Architecture host: linux Libraries BOOST: system Eigen: system nlohmann::json: system range v3: system cairo: system Directories prefix: /usr Configuration optimization: 3 b_ndebug: true debug: False Found ninja-1.10.1 at /usr/bin/ninja make[1]: Leaving directory '/<>/bali-phy-3.6.0+dfsg' dh_auto_build -a -O--buildsystem=meson cd obj-s390x-linux-gnu && LC_ALL=C.UTF-8 ninja -j4 -v [1/297] /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /<>/bali-phy-3.6.0+dfsg/src @git_message@ '(.*)' /<>/bali-phy-3.6.0+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)' [2/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_pred.cc.o -MF src/util/libutil.a.p/string_pred.cc.o.d -o src/util/libutil.a.p/string_pred.cc.o -c ../src/util/string/pred.cc [3/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_strip.cc.o -MF src/util/libutil.a.p/string_strip.cc.o.d -o src/util/libutil.a.p/string_strip.cc.o -c ../src/util/string/strip.cc [4/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/log-level.cc.o -MF src/util/libutil.a.p/log-level.cc.o.d -o src/util/libutil.a.p/log-level.cc.o -c ../src/util/log-level.cc [5/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_sanitize.cc.o -MF src/util/libutil.a.p/string_sanitize.cc.o.d -o src/util/libutil.a.p/string_sanitize.cc.o -c ../src/util/string/sanitize.cc [6/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/range.cc.o -MF src/util/libutil.a.p/range.cc.o.d -o src/util/libutil.a.p/range.cc.o -c ../src/util/range.cc [7/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/demangle.cc.o -MF src/util/libutil.a.p/demangle.cc.o.d -o src/util/libutil.a.p/demangle.cc.o -c ../src/util/demangle.cc [8/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/mapping.cc.o -MF src/util/libutil.a.p/mapping.cc.o.d -o src/util/libutil.a.p/mapping.cc.o -c ../src/util/mapping.cc [9/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/io.cc.o -MF src/util/libutil.a.p/io.cc.o.d -o src/util/libutil.a.p/io.cc.o -c ../src/util/io.cc [10/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/rng.cc.o -MF src/util/libutil.a.p/rng.cc.o.d -o src/util/libutil.a.p/rng.cc.o -c ../src/util/rng.cc [11/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/graph.cc.o -MF src/util/libutil.a.p/graph.cc.o.d -o src/util/libutil.a.p/graph.cc.o -c ../src/util/graph.cc [12/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/cmdline.cc.o -MF src/util/libutil.a.p/cmdline.cc.o.d -o src/util/libutil.a.p/cmdline.cc.o -c ../src/util/cmdline.cc [13/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/permute.cc.o -MF src/util/libutil.a.p/permute.cc.o.d -o src/util/libutil.a.p/permute.cc.o -c ../src/util/permute.cc [14/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_split.cc.o -MF src/util/libutil.a.p/string_split.cc.o.d -o src/util/libutil.a.p/string_split.cc.o -c ../src/util/string/split.cc [15/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/myexception.cc.o -MF src/util/libutil.a.p/myexception.cc.o.d -o src/util/libutil.a.p/myexception.cc.o -c ../src/util/myexception.cc [16/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/file-paths.cc.o -MF src/util/libutil.a.p/file-paths.cc.o.d -o src/util/libutil.a.p/file-paths.cc.o -c ../src/util/file-paths.cc [17/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/text.cc.o -MF src/util/libutil.a.p/text.cc.o.d -o src/util/libutil.a.p/text.cc.o -c ../src/util/text.cc [18/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/time.cc.o -MF src/util/libutil.a.p/time.cc.o.d -o src/util/libutil.a.p/time.cc.o -c ../src/util/time.cc [19/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_newick-tokenizer.cc.o -MF src/libcommon.a.p/tree_newick-tokenizer.cc.o.d -o src/libcommon.a.p/tree_newick-tokenizer.cc.o -c ../src/tree/newick-tokenizer.cc [20/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/ptree.cc.o -MF src/util/libutil.a.p/ptree.cc.o.d -o src/util/libutil.a.p/ptree.cc.o -c ../src/util/ptree.cc [21/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_sequencetree.cc.o -MF src/libcommon.a.p/tree_sequencetree.cc.o.d -o src/libcommon.a.p/tree_sequencetree.cc.o -c ../src/tree/sequencetree.cc [22/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_tree-util.cc.o -MF src/libcommon.a.p/tree_tree-util.cc.o.d -o src/libcommon.a.p/tree_tree-util.cc.o -c ../src/tree/tree-util.cc [23/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_randomtree.cc.o -MF src/libcommon.a.p/tree_randomtree.cc.o.d -o src/libcommon.a.p/tree_randomtree.cc.o -c ../src/tree/randomtree.cc [24/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree-align_n_indels.cc.o -MF src/libcommon.a.p/tree-align_n_indels.cc.o.d -o src/libcommon.a.p/tree-align_n_indels.cc.o -c ../src/tree-align/n_indels.cc [25/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/file-readers.cc.o -MF src/util/libutil.a.p/file-readers.cc.o.d -o src/util/libutil.a.p/file-readers.cc.o -c ../src/util/file-readers.cc [26/297] rm -f src/util/libutil.a && gcc-ar csrD src/util/libutil.a src/util/libutil.a.p/string_pred.cc.o src/util/libutil.a.p/string_sanitize.cc.o src/util/libutil.a.p/string_strip.cc.o src/util/libutil.a.p/string_split.cc.o src/util/libutil.a.p/log-level.cc.o src/util/libutil.a.p/io.cc.o src/util/libutil.a.p/graph.cc.o src/util/libutil.a.p/range.cc.o src/util/libutil.a.p/demangle.cc.o src/util/libutil.a.p/mapping.cc.o src/util/libutil.a.p/cmdline.cc.o src/util/libutil.a.p/rng.cc.o src/util/libutil.a.p/permute.cc.o src/util/libutil.a.p/file-paths.cc.o src/util/libutil.a.p/ptree.cc.o src/util/libutil.a.p/text.cc.o src/util/libutil.a.p/myexception.cc.o src/util/libutil.a.p/time.cc.o src/util/libutil.a.p/file-readers.cc.o [27/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always 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-Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/sequence_sequence-format.cc.o -MF src/libcommon.a.p/sequence_sequence-format.cc.o.d -o src/libcommon.a.p/sequence_sequence-format.cc.o -c ../src/sequence/sequence-format.cc [29/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/sequence_sequence.cc.o -MF src/libcommon.a.p/sequence_sequence.cc.o.d -o src/libcommon.a.p/sequence_sequence.cc.o -c ../src/sequence/sequence.cc [30/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas 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-fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_alignment-random.cc.o -MF src/libcommon.a.p/alignment_alignment-random.cc.o.d -o src/libcommon.a.p/alignment_alignment-random.cc.o -c ../src/alignment/alignment-random.cc [33/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat 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-I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_parsimony.cc.o -MF src/libcommon.a.p/tools_parsimony.cc.o.d -o src/libcommon.a.p/tools_parsimony.cc.o -c ../src/tools/parsimony.cc [41/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_partition.cc.o -MF src/libcommon.a.p/tools_partition.cc.o.d -o src/libcommon.a.p/tools_partition.cc.o -c ../src/tools/partition.cc [42/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H 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-Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_findroot.cc.o -MF src/libcommon.a.p/tools_findroot.cc.o.d -o src/libcommon.a.p/tools_findroot.cc.o -c ../src/tools/findroot.cc [44/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops 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-fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_distance-report.cc.o -MF src/libcommon.a.p/tools_distance-report.cc.o.d -o src/libcommon.a.p/tools_distance-report.cc.o -c ../src/tools/distance-report.cc [46/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_mctree.cc.o -MF src/libcommon.a.p/tools_mctree.cc.o.d -o src/libcommon.a.p/tools_mctree.cc.o -c ../src/tools/mctree.cc [47/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_inverse.cc.o -MF src/libcommon.a.p/tools_inverse.cc.o.d -o src/libcommon.a.p/tools_inverse.cc.o -c ../src/tools/inverse.cc [48/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_stats-table.cc.o -MF src/libcommon.a.p/tools_stats-table.cc.o.d -o src/libcommon.a.p/tools_stats-table.cc.o -c ../src/tools/stats-table.cc [49/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_distance-methods.cc.o -MF src/libcommon.a.p/tools_distance-methods.cc.o.d -o src/libcommon.a.p/tools_distance-methods.cc.o -c ../src/tools/distance-methods.cc [50/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/object.cc.o -MF src/computation/libcomputation.a.p/object.cc.o.d -o src/computation/libcomputation.a.p/object.cc.o -c ../src/computation/object.cc [51/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB 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src/libcommon.a.p/tools_consensus-tree.cc.o -MF src/libcommon.a.p/tools_consensus-tree.cc.o.d -o src/libcommon.a.p/tools_consensus-tree.cc.o -c ../src/tools/consensus-tree.cc [53/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB 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-DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/program.cc.o -MF src/computation/libcomputation.a.p/program.cc.o.d -o src/computation/libcomputation.a.p/program.cc.o -c ../src/computation/program.cc ../src/computation/program.cc: In member function ‘void Program::check_dependencies()’: ../src/computation/program.cc:155:10: warning: unused variable ‘index’ [-Wunused-variable] 155 | int index = find_module(name); | ^~~~~ [55/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_joint-A-T.cc.o -MF src/libcommon.a.p/tools_joint-A-T.cc.o.d -o src/libcommon.a.p/tools_joint-A-T.cc.o -c ../src/tools/joint-A-T.cc [56/297] rm -f src/libcommon.a && gcc-ar csrD src/libcommon.a src/libcommon.a.p/tree_newick-tokenizer.cc.o src/libcommon.a.p/tree_sequencetree.cc.o src/libcommon.a.p/tree_tree.cc.o src/libcommon.a.p/tree_tree-util.cc.o src/libcommon.a.p/tree_randomtree.cc.o src/libcommon.a.p/tree-align_n_indels.cc.o src/libcommon.a.p/sequence_alphabet.cc.o src/libcommon.a.p/sequence_sequence.cc.o src/libcommon.a.p/sequence_sequence-format.cc.o src/libcommon.a.p/tools_read-trees.cc.o src/libcommon.a.p/alignment_alignment-util.cc.o src/libcommon.a.p/alignment_load.cc.o src/libcommon.a.p/alignment_alignment.cc.o src/libcommon.a.p/alignment_alignment-random.cc.o src/libcommon.a.p/alignment_index-matrix.cc.o src/libcommon.a.p/tree-align_link.cc.o src/libcommon.a.p/models_path.cc.o src/libcommon.a.p/tools_statistics.cc.o src/libcommon.a.p/tools_partition.cc.o src/libcommon.a.p/tools_tree-dist.cc.o src/libcommon.a.p/tools_parsimony.cc.o src/libcommon.a.p/tools_mctree.cc.o src/libcommon.a.p/tools_stats-table.cc.o src/libcommon.a.p/tools_findroot.cc.o src/libcommon.a.p/tools_optimize.cc.o src/libcommon.a.p/tools_distance-report.cc.o src/libcommon.a.p/tools_inverse.cc.o src/libcommon.a.p/tools_joint-A-T.cc.o src/libcommon.a.p/tools_distance-methods.cc.o src/libcommon.a.p/tools_consensus-tree.cc.o [57/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/operations.cc.o -MF src/computation/libcomputation.a.p/operations.cc.o.d -o src/computation/libcomputation.a.p/operations.cc.o -c ../src/computation/operations.cc [58/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/context.cc.o -MF src/computation/libcomputation.a.p/context.cc.o.d -o src/computation/libcomputation.a.p/context.cc.o -c ../src/computation/context.cc [59/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/module.cc.o -MF src/computation/libcomputation.a.p/module.cc.o.d -o src/computation/libcomputation.a.p/module.cc.o -c ../src/computation/module.cc [60/297] c++ -Isrc/computation/libcomputation.a.p 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-O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_evaluate.cc.o -MF src/computation/libcomputation.a.p/machine_evaluate.cc.o.d -o src/computation/libcomputation.a.p/machine_evaluate.cc.o -c ../src/computation/machine/evaluate.cc [95/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_show_graph.cc.o -MF src/computation/libcomputation.a.p/machine_show_graph.cc.o.d -o src/computation/libcomputation.a.p/machine_show_graph.cc.o -c ../src/computation/machine/show_graph.cc [96/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_gc.cc.o -MF src/computation/libcomputation.a.p/machine_gc.cc.o.d -o src/computation/libcomputation.a.p/machine_gc.cc.o -c ../src/computation/machine/gc.cc [97/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_reroot.cc.o -MF src/computation/libcomputation.a.p/machine_reroot.cc.o.d -o src/computation/libcomputation.a.p/machine_reroot.cc.o -c ../src/computation/machine/reroot.cc [98/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_kind.cc.o -MF src/computation/libcomputation.a.p/expression_kind.cc.o.d -o src/computation/libcomputation.a.p/expression_kind.cc.o -c ../src/computation/expression/kind.cc [99/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_effects.cc.o -MF src/computation/libcomputation.a.p/machine_effects.cc.o.d -o src/computation/libcomputation.a.p/machine_effects.cc.o -c ../src/computation/machine/effects.cc [100/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_free-vars.cc.o -MF src/computation/libcomputation.a.p/optimization_free-vars.cc.o.d -o src/computation/libcomputation.a.p/optimization_free-vars.cc.o -c ../src/computation/optimization/free-vars.cc [101/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_graph_register.cc.o -MF src/computation/libcomputation.a.p/machine_graph_register.cc.o.d -o src/computation/libcomputation.a.p/machine_graph_register.cc.o -c ../src/computation/machine/graph_register.cc [102/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_inliner.cc.o -MF src/computation/libcomputation.a.p/optimization_inliner.cc.o.d -o src/computation/libcomputation.a.p/optimization_inliner.cc.o -c ../src/computation/optimization/inliner.cc [103/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_float-out.cc.o -MF src/computation/libcomputation.a.p/optimization_float-out.cc.o.d -o src/computation/libcomputation.a.p/optimization_float-out.cc.o -c ../src/computation/optimization/float-out.cc [104/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_occurrence.cc.o -MF src/computation/libcomputation.a.p/optimization_occurrence.cc.o.d -o src/computation/libcomputation.a.p/optimization_occurrence.cc.o -c ../src/computation/optimization/occurrence.cc [105/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-engine.cc.o -MF src/libbaliphy.a.p/dp_dp-engine.cc.o.d -o src/libbaliphy.a.p/dp_dp-engine.cc.o -c ../src/dp/dp-engine.cc [106/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_simplifier.cc.o -MF src/computation/libcomputation.a.p/optimization_simplifier.cc.o.d -o src/computation/libcomputation.a.p/optimization_simplifier.cc.o -c ../src/computation/optimization/simplifier.cc [107/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_set-levels.cc.o -MF src/computation/libcomputation.a.p/optimization_set-levels.cc.o.d -o src/computation/libcomputation.a.p/optimization_set-levels.cc.o -c ../src/computation/optimization/set-levels.cc [108/297] rm -f src/computation/libcomputation.a && gcc-ar csrD src/computation/libcomputation.a src/computation/libcomputation.a.p/object.cc.o src/computation/libcomputation.a.p/closure.cc.o src/computation/libcomputation.a.p/program.cc.o src/computation/libcomputation.a.p/preprocess.cc.o src/computation/libcomputation.a.p/module.cc.o src/computation/libcomputation.a.p/loader.cc.o src/computation/libcomputation.a.p/context.cc.o src/computation/libcomputation.a.p/operations.cc.o src/computation/libcomputation.a.p/param.cc.o src/computation/libcomputation.a.p/parser_desugar.cc.o src/computation/libcomputation.a.p/parser_desugar-case.cc.o src/computation/libcomputation.a.p/parser_rename.cc.o src/computation/libcomputation.a.p/parser_driver.cc.o src/computation/libcomputation.a.p/parser_lexer.cc.o src/computation/libcomputation.a.p/parser_parser.cc.o src/computation/libcomputation.a.p/expression_operator.cc.o src/computation/libcomputation.a.p/expression_expression.cc.o src/computation/libcomputation.a.p/expression_constructor.cc.o src/computation/libcomputation.a.p/expression_expression_ref.cc.o src/computation/libcomputation.a.p/expression_AST_node.cc.o src/computation/libcomputation.a.p/expression_apply.cc.o src/computation/libcomputation.a.p/expression_substitute.cc.o src/computation/libcomputation.a.p/expression_indexify.cc.o src/computation/libcomputation.a.p/expression_let.cc.o src/computation/libcomputation.a.p/expression_case.cc.o src/computation/libcomputation.a.p/expression_trim.cc.o src/computation/libcomputation.a.p/expression_tuple.cc.o src/computation/libcomputation.a.p/expression_list.cc.o src/computation/libcomputation.a.p/expression_var.cc.o src/computation/libcomputation.a.p/expression_lambda.cc.o src/computation/libcomputation.a.p/expression_random_variable.cc.o src/computation/libcomputation.a.p/expression_modifiable.cc.o src/computation/libcomputation.a.p/expression_reg_var.cc.o src/computation/libcomputation.a.p/expression_bool.cc.o src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o src/computation/libcomputation.a.p/expression_maybe.cc.o src/computation/libcomputation.a.p/expression_do_block.cc.o src/computation/libcomputation.a.p/machine_args.cc.o src/computation/libcomputation.a.p/machine_tokens.cc.o src/computation/libcomputation.a.p/machine_graph_register.cc.o src/computation/libcomputation.a.p/machine_show_graph.cc.o src/computation/libcomputation.a.p/machine_evaluate.cc.o src/computation/libcomputation.a.p/machine_sums.cc.o src/computation/libcomputation.a.p/machine_gc.cc.o src/computation/libcomputation.a.p/machine_reroot.cc.o src/computation/libcomputation.a.p/machine_effects.cc.o src/computation/libcomputation.a.p/expression_kind.cc.o src/computation/libcomputation.a.p/optimization_free-vars.cc.o src/computation/libcomputation.a.p/optimization_set-levels.cc.o src/computation/libcomputation.a.p/optimization_float-out.cc.o src/computation/libcomputation.a.p/optimization_occurrence.cc.o src/computation/libcomputation.a.p/optimization_inliner.cc.o src/computation/libcomputation.a.p/optimization_simplifier.cc.o [109/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. 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-Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tree-align_link2.cc.o -MF src/libbaliphy.a.p/tree-align_link2.cc.o.d -o src/libbaliphy.a.p/tree-align_link2.cc.o -c ../src/tree-align/link2.cc [148/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_unification.cc.o -MF src/libbaliphy.a.p/models_unification.cc.o.d -o src/libbaliphy.a.p/models_unification.cc.o -c ../src/models/unification.cc [149/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_typecheck.cc.o -MF src/libbaliphy.a.p/models_typecheck.cc.o.d -o src/libbaliphy.a.p/models_typecheck.cc.o -c ../src/models/typecheck.cc [150/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/probability_choose.cc.o -MF src/libbaliphy.a.p/probability_choose.cc.o.d -o src/libbaliphy.a.p/probability_choose.cc.o -c ../src/probability/choose.cc [151/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -MF src/libbaliphy.a.p/alignment_alignment-constraint.cc.o.d -o src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -c ../src/alignment/alignment-constraint.cc [152/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/imodel_imodel.cc.o -MF src/libbaliphy.a.p/imodel_imodel.cc.o.d -o src/libbaliphy.a.p/imodel_imodel.cc.o -c ../src/imodel/imodel.cc [153/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_model.cc.o -MF src/libbaliphy.a.p/models_model.cc.o.d -o src/libbaliphy.a.p/models_model.cc.o -c ../src/models/model.cc [154/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tree-align_n_indels2.cc.o -MF src/libbaliphy.a.p/tree-align_n_indels2.cc.o.d -o src/libbaliphy.a.p/tree-align_n_indels2.cc.o -c ../src/tree-align/n_indels2.cc [155/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/probability_probability.cc.o -MF src/libbaliphy.a.p/probability_probability.cc.o.d -o src/libbaliphy.a.p/probability_probability.cc.o -c ../src/probability/probability.cc [156/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/alignment_alignment-util2.cc.o -MF src/libbaliphy.a.p/alignment_alignment-util2.cc.o.d -o src/libbaliphy.a.p/alignment_alignment-util2.cc.o -c ../src/alignment/alignment-util2.cc [157/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/version.cc.o -MF src/libbaliphy.a.p/version.cc.o.d -o src/libbaliphy.a.p/version.cc.o -c ../src/version.cc ../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 67 | s<<__DATE__<<" "<<__TIME__; | ^~~~~~~~ ../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 67 | s<<__DATE__<<" "<<__TIME__; | ^~~~~~~~ [158/297] c++ -Isrc/builtins/Data.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Data.so.p/Data.cc.o -MF src/builtins/Data.so.p/Data.cc.o.d -o src/builtins/Data.so.p/Data.cc.o -c ../src/builtins/Data.cc [159/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tools_parsimony2.cc.o -MF src/libbaliphy.a.p/tools_parsimony2.cc.o.d -o src/libbaliphy.a.p/tools_parsimony2.cc.o -c ../src/tools/parsimony2.cc [160/297] rm -f src/libbaliphy.a && gcc-ar csrD src/libbaliphy.a src/libbaliphy.a.p/dp_dp_hmm.cc.o src/libbaliphy.a.p/dp_hmm.cc.o src/libbaliphy.a.p/dp_dp-engine.cc.o src/libbaliphy.a.p/dp_dp-array.cc.o src/libbaliphy.a.p/dp_dp-matrix.cc.o src/libbaliphy.a.p/dp_dp-cube.cc.o src/libbaliphy.a.p/dp_2way.cc.o src/libbaliphy.a.p/dp_3way.cc.o src/libbaliphy.a.p/dp_5way.cc.o src/libbaliphy.a.p/dp_alignment-sums.cc.o src/libbaliphy.a.p/mcmc_mcmc.cc.o src/libbaliphy.a.p/mcmc_proposals.cc.o src/libbaliphy.a.p/mcmc_slice-sampling.cc.o src/libbaliphy.a.p/mcmc_AIS.cc.o src/libbaliphy.a.p/mcmc_logger.cc.o src/libbaliphy.a.p/mcmc_moves.cc.o src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o src/libbaliphy.a.p/mcmc_sample-alignment.cc.o src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o src/libbaliphy.a.p/mcmc_sample-node.cc.o src/libbaliphy.a.p/mcmc_sample-cube.cc.o src/libbaliphy.a.p/mcmc_sample-tri.cc.o src/libbaliphy.a.p/mcmc_setup.cc.o src/libbaliphy.a.p/substitution_substitution.cc.o src/libbaliphy.a.p/substitution_parsimony.cc.o src/libbaliphy.a.p/math_exponential.cc.o src/libbaliphy.a.p/math_eigenvalue.cc.o src/libbaliphy.a.p/math_pow2.cc.o src/libbaliphy.a.p/models_parameters.cc.o src/libbaliphy.a.p/models_site-compression.cc.o src/libbaliphy.a.p/models_TreeInterface.cc.o src/libbaliphy.a.p/models_setup.cc.o src/libbaliphy.a.p/models_rules.cc.o src/libbaliphy.a.p/models_parse.cc.o src/libbaliphy.a.p/models_typecheck.cc.o src/libbaliphy.a.p/models_unification.cc.o src/libbaliphy.a.p/models_model.cc.o src/libbaliphy.a.p/tree-align_link2.cc.o src/libbaliphy.a.p/probability_choose.cc.o src/libbaliphy.a.p/probability_probability.cc.o src/libbaliphy.a.p/imodel_imodel.cc.o src/libbaliphy.a.p/alignment_alignment-constraint.cc.o src/libbaliphy.a.p/alignment_alignment-util2.cc.o src/libbaliphy.a.p/tree-align_n_indels2.cc.o src/libbaliphy.a.p/tools_parsimony2.cc.o src/libbaliphy.a.p/version.cc.o [161/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/link-partitions.cc.o -MF src/bali-phy/bali-phy.p/link-partitions.cc.o.d -o src/bali-phy/bali-phy.p/link-partitions.cc.o -c ../src/bali-phy/link-partitions.cc [162/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/bali-phy.cc.o -MF src/bali-phy/bali-phy.p/bali-phy.cc.o.d -o src/bali-phy/bali-phy.p/bali-phy.cc.o -c ../src/bali-phy/bali-phy.cc ../src/bali-phy/bali-phy.cc: In function ‘void report_mem()’: ../src/bali-phy/bali-phy.cc:122:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 122 | system(cmd.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~ [163/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/help.cc.o -MF src/bali-phy/bali-phy.p/help.cc.o.d -o src/bali-phy/bali-phy.p/help.cc.o -c ../src/bali-phy/help.cc [164/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/files.cc.o -MF src/bali-phy/bali-phy.p/files.cc.o.d -o src/bali-phy/bali-phy.p/files.cc.o -c ../src/bali-phy/files.cc [165/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/system.cc.o -MF src/bali-phy/bali-phy.p/system.cc.o.d -o src/bali-phy/bali-phy.p/system.cc.o -c ../src/bali-phy/system.cc [166/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/paths.cc.o -MF src/bali-phy/bali-phy.p/paths.cc.o.d -o src/bali-phy/bali-phy.p/paths.cc.o -c ../src/bali-phy/paths.cc [167/297] c++ -Isrc/builtins/Array.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Array.so.p/Array.cc.o -MF src/builtins/Array.so.p/Array.cc.o.d -o src/builtins/Array.so.p/Array.cc.o -c ../src/builtins/Array.cc [168/297] c++ -o src/builtins/Array.so src/builtins/Array.so.p/Array.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Array.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [169/297] c++ -o src/builtins/Data.so src/builtins/Data.so.p/Data.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Data.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [170/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/cmd_line.cc.o -MF src/bali-phy/bali-phy.p/cmd_line.cc.o.d -o src/bali-phy/bali-phy.p/cmd_line.cc.o -c ../src/bali-phy/cmd_line.cc [171/297] c++ -Isrc/builtins/Prelude.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Prelude.so.p/Prelude.cc.o -MF src/builtins/Prelude.so.p/Prelude.cc.o.d -o src/builtins/Prelude.so.p/Prelude.cc.o -c ../src/builtins/Prelude.cc [172/297] c++ -o src/builtins/Prelude.so src/builtins/Prelude.so.p/Prelude.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Prelude.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [173/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/loggers.cc.o -MF src/bali-phy/bali-phy.p/loggers.cc.o.d -o src/bali-phy/bali-phy.p/loggers.cc.o -c ../src/bali-phy/loggers.cc [174/297] c++ -Isrc/builtins/Pair.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Pair.so.p/Pair.cc.o -MF src/builtins/Pair.so.p/Pair.cc.o.d -o src/builtins/Pair.so.p/Pair.cc.o -c ../src/builtins/Pair.cc [175/297] c++ -o src/builtins/Pair.so src/builtins/Pair.so.p/Pair.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Pair.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [176/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/A-T-model.cc.o -MF src/bali-phy/bali-phy.p/A-T-model.cc.o.d -o src/bali-phy/bali-phy.p/A-T-model.cc.o -c ../src/bali-phy/A-T-model.cc [177/297] c++ -Isrc/builtins/Alphabet.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Alphabet.so.p/Alphabet.cc.o -MF src/builtins/Alphabet.so.p/Alphabet.cc.o.d -o src/builtins/Alphabet.so.p/Alphabet.cc.o -c ../src/builtins/Alphabet.cc [178/297] c++ -o src/bali-phy/bali-phy src/bali-phy/bali-phy.p/link-partitions.cc.o src/bali-phy/bali-phy.p/bali-phy.cc.o src/bali-phy/bali-phy.p/help.cc.o src/bali-phy/bali-phy.p/A-T-model.cc.o src/bali-phy/bali-phy.p/files.cc.o src/bali-phy/bali-phy.p/loggers.cc.o src/bali-phy/bali-phy.p/system.cc.o src/bali-phy/bali-phy.p/cmd_line.cc.o src/bali-phy/bali-phy.p/paths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-export-dynamic -Wl,--whole-archive -Wl,--start-group src/util/libutil.a src/libcommon.a src/computation/libcomputation.a src/libbaliphy.a -Wl,--no-whole-archive -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -ldl -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [179/297] c++ -o src/builtins/Alphabet.so src/builtins/Alphabet.so.p/Alphabet.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alphabet.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [180/297] c++ -Isrc/builtins/Modifiables.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Modifiables.so.p/Modifiables.cc.o -MF src/builtins/Modifiables.so.p/Modifiables.cc.o.d -o src/builtins/Modifiables.so.p/Modifiables.cc.o -c ../src/builtins/Modifiables.cc [181/297] c++ -o src/builtins/Modifiables.so src/builtins/Modifiables.so.p/Modifiables.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Modifiables.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [182/297] c++ -Isrc/builtins/Distribution.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Distribution.so.p/Distribution.cc.o -MF src/builtins/Distribution.so.p/Distribution.cc.o.d -o src/builtins/Distribution.so.p/Distribution.cc.o -c ../src/builtins/Distribution.cc [183/297] c++ -o src/builtins/Distribution.so src/builtins/Distribution.so.p/Distribution.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [184/297] c++ -Isrc/builtins/Range.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Range.so.p/Range.cc.o -MF src/builtins/Range.so.p/Range.cc.o.d -o src/builtins/Range.so.p/Range.cc.o -c ../src/builtins/Range.cc [185/297] c++ -o src/builtins/Range.so src/builtins/Range.so.p/Range.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [186/297] c++ -Isrc/builtins/PopGen.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/PopGen.so.p/PopGen.cc.o -MF src/builtins/PopGen.so.p/PopGen.cc.o.d -o src/builtins/PopGen.so.p/PopGen.cc.o -c ../src/builtins/PopGen.cc [187/297] c++ -o src/builtins/PopGen.so src/builtins/PopGen.so.p/PopGen.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [188/297] c++ -Isrc/builtins/Alignment.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Alignment.so.p/Alignment.cc.o -MF src/builtins/Alignment.so.p/Alignment.cc.o.d -o src/builtins/Alignment.so.p/Alignment.cc.o -c ../src/builtins/Alignment.cc [189/297] c++ -o src/builtins/Alignment.so src/builtins/Alignment.so.p/Alignment.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alignment.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [190/297] c++ -Isrc/builtins/Vector.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Vector.so.p/Vector.cc.o -MF src/builtins/Vector.so.p/Vector.cc.o.d -o src/builtins/Vector.so.p/Vector.cc.o -c ../src/builtins/Vector.cc [191/297] c++ -o src/builtins/Vector.so src/builtins/Vector.so.p/Vector.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [192/297] c++ -Isrc/builtins/Environment.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Environment.so.p/Environment.cc.o -MF src/builtins/Environment.so.p/Environment.cc.o.d -o src/builtins/Environment.so.p/Environment.cc.o -c ../src/builtins/Environment.cc [193/297] c++ -o src/builtins/Environment.so src/builtins/Environment.so.p/Environment.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [194/297] c++ -Isrc/builtins/MCMC.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/MCMC.so.p/MCMC.cc.o -MF src/builtins/MCMC.so.p/MCMC.cc.o.d -o src/builtins/MCMC.so.p/MCMC.cc.o -c ../src/builtins/MCMC.cc [195/297] c++ -o src/builtins/MCMC.so src/builtins/MCMC.so.p/MCMC.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [196/297] c++ -Isrc/builtins/SModel.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/SModel.so.p/SModel.cc.o -MF src/builtins/SModel.so.p/SModel.cc.o.d -o src/builtins/SModel.so.p/SModel.cc.o -c ../src/builtins/SModel.cc [197/297] c++ -o src/builtins/SModel.so src/builtins/SModel.so.p/SModel.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [198/297] c++ -Isrc/builtins/Real.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Real.so.p/Real.cc.o -MF src/builtins/Real.so.p/Real.cc.o.d -o src/builtins/Real.so.p/Real.cc.o -c ../src/builtins/Real.cc [199/297] c++ -o src/builtins/Real.so src/builtins/Real.so.p/Real.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Real.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [200/297] c++ -Isrc/builtins/Bits.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Bits.so.p/Bits.cc.o -MF src/builtins/Bits.so.p/Bits.cc.o.d -o src/builtins/Bits.so.p/Bits.cc.o -c ../src/builtins/Bits.cc [201/297] c++ -o src/builtins/Bits.so src/builtins/Bits.so.p/Bits.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Bits.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [202/297] c++ -Isrc/builtins/Text.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Text.so.p/Text.cc.o -MF src/builtins/Text.so.p/Text.cc.o.d -o src/builtins/Text.so.p/Text.cc.o -c ../src/builtins/Text.cc [203/297] c++ -o src/builtins/Text.so src/builtins/Text.so.p/Text.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Text.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [204/297] c++ -Isrc/builtins/Char.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Char.so.p/Char.cc.o -MF src/builtins/Char.so.p/Char.cc.o.d -o src/builtins/Char.so.p/Char.cc.o -c ../src/builtins/Char.cc [205/297] c++ -o src/builtins/Char.so src/builtins/Char.so.p/Char.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Char.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [206/297] c++ -Isrc/builtins/Foreign.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Foreign.so.p/Foreign.cc.o -MF src/builtins/Foreign.so.p/Foreign.cc.o.d -o src/builtins/Foreign.so.p/Foreign.cc.o -c ../src/builtins/Foreign.cc [207/297] c++ -o src/builtins/Foreign.so src/builtins/Foreign.so.p/Foreign.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Foreign.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [208/297] c++ -Isrc/model_P.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/model_P.p/tools_model_P.cc.o -MF src/model_P.p/tools_model_P.cc.o.d -o src/model_P.p/tools_model_P.cc.o -c ../src/tools/model_P.cc [209/297] c++ -o src/model_P src/model_P.p/tools_model_P.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [210/297] c++ -Isrc/builtins/SMC.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/SMC.so.p/SMC.cc.o -MF src/builtins/SMC.so.p/SMC.cc.o.d -o src/builtins/SMC.so.p/SMC.cc.o -c ../src/builtins/SMC.cc [211/297] c++ -o src/builtins/SMC.so src/builtins/SMC.so.p/SMC.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -Wl,--end-group [212/297] c++ -Isrc/stats-select.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/stats-select.p/tools_stats-select.cc.o -MF src/stats-select.p/tools_stats-select.cc.o.d -o src/stats-select.p/tools_stats-select.cc.o -c ../src/tools/stats-select.cc [213/297] c++ -o src/stats-select src/stats-select.p/tools_stats-select.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [214/297] c++ -Isrc/statreport.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/statreport.p/tools_statreport.cc.o -MF src/statreport.p/tools_statreport.cc.o.d -o src/statreport.p/tools_statreport.cc.o -c ../src/tools/statreport.cc [215/297] c++ -o src/statreport src/statreport.p/tools_statreport.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [216/297] c++ -Isrc/alignment-gild.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-gild.p/tools_alignment-gild.cc.o -MF src/alignment-gild.p/tools_alignment-gild.cc.o.d -o src/alignment-gild.p/tools_alignment-gild.cc.o -c ../src/tools/alignment-gild.cc [217/297] c++ -o src/alignment-gild src/alignment-gild.p/tools_alignment-gild.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [218/297] c++ -Isrc/alignment-consensus.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-consensus.p/tools_alignment-consensus.cc.o -MF src/alignment-consensus.p/tools_alignment-consensus.cc.o.d -o src/alignment-consensus.p/tools_alignment-consensus.cc.o -c ../src/tools/alignment-consensus.cc [219/297] c++ -o src/alignment-consensus src/alignment-consensus.p/tools_alignment-consensus.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [220/297] c++ -Isrc/alignment-chop-internal.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -MF src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o.d -o src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -c ../src/tools/alignment-chop-internal.cc [221/297] c++ -o src/alignment-chop-internal src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [222/297] c++ -Isrc/alignment-max.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-max.p/tools_alignment-max.cc.o -MF src/alignment-max.p/tools_alignment-max.cc.o.d -o src/alignment-max.p/tools_alignment-max.cc.o -c ../src/tools/alignment-max.cc [223/297] c++ -o src/alignment-max src/alignment-max.p/tools_alignment-max.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [224/297] c++ -Isrc/alignment-translate.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-translate.p/tools_alignment-translate.cc.o -MF src/alignment-translate.p/tools_alignment-translate.cc.o.d -o src/alignment-translate.p/tools_alignment-translate.cc.o -c ../src/tools/alignment-translate.cc [225/297] c++ -o src/alignment-translate src/alignment-translate.p/tools_alignment-translate.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [226/297] c++ -Isrc/alignment-info.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-info.p/tools_alignment-info.cc.o -MF src/alignment-info.p/tools_alignment-info.cc.o.d -o src/alignment-info.p/tools_alignment-info.cc.o -c ../src/tools/alignment-info.cc [227/297] c++ -o src/alignment-info src/alignment-info.p/tools_alignment-info.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [228/297] c++ -Isrc/alignment-indices.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-indices.p/tools_alignment-indices.cc.o -MF src/alignment-indices.p/tools_alignment-indices.cc.o.d -o src/alignment-indices.p/tools_alignment-indices.cc.o -c ../src/tools/alignment-indices.cc [229/297] c++ -o src/alignment-indices src/alignment-indices.p/tools_alignment-indices.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [230/297] c++ -Isrc/alignment-cat.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-cat.p/tools_alignment-cat.cc.o -MF src/alignment-cat.p/tools_alignment-cat.cc.o.d -o src/alignment-cat.p/tools_alignment-cat.cc.o -c ../src/tools/alignment-cat.cc [231/297] c++ -o src/alignment-cat src/alignment-cat.p/tools_alignment-cat.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [232/297] c++ -Isrc/tree-mean-lengths.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -MF src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o.d -o src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -c ../src/tools/tree-mean-lengths.cc [233/297] c++ -o src/tree-mean-lengths src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [234/297] c++ -Isrc/mctree-mean-lengths.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -MF src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o.d -o src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -c ../src/tools/mctree-mean-lengths.cc [235/297] c++ -o src/mctree-mean-lengths src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [236/297] c++ -Isrc/trees-consensus.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-consensus.p/tools_trees-consensus.cc.o -MF src/trees-consensus.p/tools_trees-consensus.cc.o.d -o src/trees-consensus.p/tools_trees-consensus.cc.o -c ../src/tools/trees-consensus.cc [237/297] c++ -o src/trees-consensus src/trees-consensus.p/tools_trees-consensus.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [238/297] c++ -Isrc/alignment-find.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-find.p/tools_alignment-find.cc.o -MF src/alignment-find.p/tools_alignment-find.cc.o.d -o src/alignment-find.p/tools_alignment-find.cc.o -c ../src/tools/alignment-find.cc [239/297] c++ -o src/alignment-find src/alignment-find.p/tools_alignment-find.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [240/297] c++ -Isrc/trees-to-SRQ.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -MF src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o.d -o src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -c ../src/tools/trees-to-SRQ.cc [241/297] c++ -o src/trees-to-SRQ src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [242/297] c++ -Isrc/pickout.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/pickout.p/tools_pickout.cc.o -MF src/pickout.p/tools_pickout.cc.o.d -o src/pickout.p/tools_pickout.cc.o -c ../src/tools/pickout.cc [243/297] c++ -o src/pickout src/pickout.p/tools_pickout.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [244/297] c++ -Isrc/cut-range.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/cut-range.p/tools_cut-range.cc.o -MF src/cut-range.p/tools_cut-range.cc.o.d -o src/cut-range.p/tools_cut-range.cc.o -c ../src/tools/cut-range.cc [245/297] c++ -o src/cut-range src/cut-range.p/tools_cut-range.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [246/297] c++ -Isrc/tree-tool.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/tree-tool.p/tools_tree-tool.cc.o -MF src/tree-tool.p/tools_tree-tool.cc.o.d -o src/tree-tool.p/tools_tree-tool.cc.o -c ../src/tools/tree-tool.cc [247/297] c++ -Isrc/trees-distances.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-distances.p/tools_trees-distances.cc.o -MF src/trees-distances.p/tools_trees-distances.cc.o.d -o src/trees-distances.p/tools_trees-distances.cc.o -c ../src/tools/trees-distances.cc [248/297] c++ -o src/trees-distances src/trees-distances.p/tools_trees-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [249/297] c++ -o src/tree-tool src/tree-tool.p/tools_tree-tool.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [250/297] c++ -Isrc/alignment-thin.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-thin.p/tools_alignment-thin.cc.o -MF src/alignment-thin.p/tools_alignment-thin.cc.o.d -o src/alignment-thin.p/tools_alignment-thin.cc.o -c ../src/tools/alignment-thin.cc [251/297] c++ -o src/alignment-thin src/alignment-thin.p/tools_alignment-thin.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [252/297] c++ -Isrc/alignment-draw.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-draw.p/tools_colors.cc.o -MF src/alignment-draw.p/tools_colors.cc.o.d -o src/alignment-draw.p/tools_colors.cc.o -c ../src/tools/colors.cc [253/297] c++ -Isrc/alignment-draw.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK 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-Isrc/alignments-diff.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignments-diff.p/tools_alignments-diff.cc.o -MF src/alignments-diff.p/tools_alignments-diff.cc.o.d -o src/alignments-diff.p/tools_alignments-diff.cc.o -c ../src/tools/alignments-diff.cc [256/297] c++ -Isrc/trees-bootstrap.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-bootstrap.p/tools_bootstrap.cc.o -MF src/trees-bootstrap.p/tools_bootstrap.cc.o.d -o src/trees-bootstrap.p/tools_bootstrap.cc.o -c ../src/tools/bootstrap.cc [257/297] c++ -o src/alignments-diff src/alignments-diff.p/tools_alignments-diff.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [258/297] c++ -Isrc/trees-bootstrap.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-bootstrap.p/tools_trees-bootstrap.cc.o -MF src/trees-bootstrap.p/tools_trees-bootstrap.cc.o.d -o src/trees-bootstrap.p/tools_trees-bootstrap.cc.o -c ../src/tools/trees-bootstrap.cc [259/297] c++ -o src/trees-bootstrap src/trees-bootstrap.p/tools_trees-bootstrap.cc.o src/trees-bootstrap.p/tools_bootstrap.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [260/297] c++ -Isrc/alignment-distances.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-distances.p/tools_alignment-distances.cc.o -MF src/alignment-distances.p/tools_alignment-distances.cc.o.d -o src/alignment-distances.p/tools_alignment-distances.cc.o -c ../src/tools/alignment-distances.cc [261/297] c++ -o src/alignment-distances src/alignment-distances.p/tools_alignment-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [262/297] c++ -Isrc/bali-subsample.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-subsample.p/tools_subsample.cc.o -MF src/bali-subsample.p/tools_subsample.cc.o.d -o src/bali-subsample.p/tools_subsample.cc.o -c ../src/tools/subsample.cc [263/297] c++ -o src/bali-subsample src/bali-subsample.p/tools_subsample.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [264/297] /usr/bin/meson --internal exe --capture doc/bali-phy.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy.md [265/297] /usr/bin/meson --internal exe --capture doc/model_P.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/model_P.md [266/297] /usr/bin/meson --internal exe --capture doc/statreport.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/statreport.md [267/297] /usr/bin/meson --internal exe --capture doc/stats-select.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/stats-select.md [268/297] /usr/bin/meson --internal exe --capture doc/alignment-gild.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-gild.md [269/297] /usr/bin/meson --internal exe --capture doc/alignment-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-consensus.md [270/297] c++ -Isrc/draw-tree.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/draw-tree.p/tools_draw-tree.cc.o -MF src/draw-tree.p/tools_draw-tree.cc.o.d -o src/draw-tree.p/tools_draw-tree.cc.o -c ../src/tools/draw-tree.cc ../src/tools/draw-tree.cc: In function ‘MC_tree_with_lengths collapse_MC_tree(const MC_tree_with_lengths&)’: ../src/tools/draw-tree.cc:3351:10: warning: unused variable ‘right1’ [-Wunused-variable] 3351 | int right1 = MC1.mapping[b1]; | ^~~~~~ [271/297] /usr/bin/meson --internal exe --capture doc/alignment-max.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-max.md [272/297] c++ -o src/draw-tree src/draw-tree.p/tools_draw-tree.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm /usr/lib/s390x-linux-gnu/libcairo.so -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [273/297] c++ -Isrc/extract-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/extract-ancestors.p/tools_extract-ancestors.cc.o -MF src/extract-ancestors.p/tools_extract-ancestors.cc.o.d -o src/extract-ancestors.p/tools_extract-ancestors.cc.o -c ../src/tools/extract-ancestors.cc [274/297] c++ -o src/extract-ancestors src/extract-ancestors.p/tools_extract-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [275/297] /usr/bin/meson --internal exe --capture doc/alignment-indices.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-indices.md [276/297] /usr/bin/meson --internal exe --capture doc/alignment-chop-internal.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-chop-internal.md [277/297] /usr/bin/meson --internal exe --capture doc/alignment-info.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-info.md [278/297] /usr/bin/meson --internal exe --capture doc/alignment-cat.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-cat.md [279/297] /usr/bin/meson --internal exe --capture doc/alignment-translate.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-translate.md [280/297] /usr/bin/meson --internal exe --capture doc/alignment-find.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-find.md [281/297] /usr/bin/meson --internal exe --capture doc/trees-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-consensus.md [282/297] /usr/bin/meson --internal exe --capture doc/tree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-mean-lengths.md [283/297] /usr/bin/meson --internal exe --capture doc/mctree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/mctree-mean-lengths.md [284/297] /usr/bin/meson --internal exe --capture doc/trees-to-SRQ.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-to-SRQ.md [285/297] /usr/bin/meson --internal exe --capture doc/alignments-diff.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignments-diff.md [286/297] /usr/bin/meson --internal exe --capture doc/tree-tool.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-tool.md [287/297] /usr/bin/meson --internal exe --capture doc/alignment-distances.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-distances.md [288/297] /usr/bin/meson --internal exe --capture doc/alignment-draw.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-draw.md [289/297] /usr/bin/meson --internal exe --capture doc/trees-bootstrap.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-bootstrap.md [290/297] /usr/bin/meson --internal exe --capture doc/extract-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/extract-ancestors.md [291/297] /usr/bin/meson --internal exe --capture doc/draw-tree.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/draw-tree.md [292/297] /usr/bin/meson --internal exe --capture doc/summarize-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/summarize-ancestors.md [293/297] /usr/bin/meson --internal exe --capture doc/bali-subsample.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-subsample.md [294/297] /usr/bin/meson --internal exe --capture doc/bp-analyze.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bp-analyze.md [295/297] /usr/bin/meson --internal exe --capture doc/bali-phy-pkg.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy-pkg.md [296/297] c++ -Isrc/summarize-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -DNDEBUG -DNDEBUG_DP -funroll-loops -fno-math-errno -fno-signed-zeros -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -MF src/summarize-ancestors.p/tools_summarize-ancestors.cc.o.d -o src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -c ../src/tools/summarize-ancestors.cc [297/297] c++ -o src/summarize-ancestors src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/<>/bali-phy-3.6.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/s390x-linux-gnu/libboost_system.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_random.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/s390x-linux-gnu/libboost_filesystem.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX dh_auto_test -a -O--buildsystem=meson cd obj-s390x-linux-gnu && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 meson test ninja: Entering directory `/<>/bali-phy-3.6.0+dfsg/obj-s390x-linux-gnu' [1/4] Generating git-version.h with a custom command 1/36 bali-phy version OK 0.02s 2/36 bali-phy help OK 0.01s 3/36 bali-phy 5d test OK 2.23s 4/36 bali-phy 5d +A 50 OK 7.31s 5/36 bali-phy 48 +A 3 OK 9.94s 6/36 bali-phy 5d -A 200 OK 4.38s 7/36 model_P --help OK 0.01s 8/36 statreport --help OK 0.01s 9/36 stats-select --help OK 0.01s 10/36 alignment-gild --help OK 0.01s 11/36 alignment-consensus --help OK 0.01s 12/36 alignment-max --help OK 0.01s 13/36 alignment-chop-internal --help OK 0.01s 14/36 alignment-indices --help OK 0.01s 15/36 alignment-info --help OK 0.01s 16/36 alignment-cat --help OK 0.01s 17/36 alignment-translate --help OK 0.01s 18/36 alignment-find --help OK 0.01s 19/36 trees-consensus --help OK 0.01s 20/36 tree-mean-lengths --help OK 0.01s 21/36 mctree-mean-lengths --help OK 0.01s 22/36 trees-to-SRQ --help OK 0.01s 23/36 pickout --help OK 0.01s 24/36 cut-range --help OK 0.01s 25/36 trees-distances --help OK 0.01s 26/36 alignment-thin --help OK 0.01s 27/36 alignments-diff --help OK 0.01s 28/36 tree-tool --help OK 0.01s 29/36 alignment-distances --help OK 0.01s 30/36 alignment-draw --help OK 0.01s 31/36 trees-bootstrap --help OK 0.01s 32/36 draw-tree --help OK 0.01s 33/36 extract-ancestors --help OK 0.01s 34/36 summarize-ancestors --help OK 0.01s 35/36 subsample --help OK 0.01s 36/36 bali-phy testsuite OK 157.61s Ok: 36 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /<>/bali-phy-3.6.0+dfsg/obj-s390x-linux-gnu/meson-logs/testlog.txt create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=meson dh_prep -a -O--buildsystem=meson dh_auto_install -a -O--buildsystem=meson cd obj-s390x-linux-gnu && DESTDIR=/<>/bali-phy-3.6.0\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install [1/5] Generating git-version.h with a custom command [1/2] Installing files. Installing subdir /<>/bali-phy-3.6.0+dfsg/haskell to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/bali-phy-3.6.0+dfsg/haskell/Range.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/bali-phy-3.6.0+dfsg/haskell/Parse.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/bali-phy-3.6.0+dfsg/haskell/MCMC.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/bali-phy-3.6.0+dfsg/haskell/Parameters.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/bali-phy-3.6.0+dfsg/haskell/PopGen.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/bali-phy-3.6.0+dfsg/haskell/Prelude.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/bali-phy-3.6.0+dfsg/haskell/IModel.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/bali-phy-3.6.0+dfsg/haskell/SMC.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/bali-phy-3.6.0+dfsg/haskell/SModel.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/bali-phy-3.6.0+dfsg/haskell/Tree.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /<>/bali-phy-3.6.0+dfsg/haskell/Foreign/String.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /<>/bali-phy-3.6.0+dfsg/haskell/Foreign/Pair.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /<>/bali-phy-3.6.0+dfsg/haskell/Foreign/Introspection.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /<>/bali-phy-3.6.0+dfsg/haskell/Foreign/Vector.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Tuple.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Map.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Matrix.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/ReadFile.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Bool.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/JSON.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Char.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Array.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Either.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Ord.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Eq.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Text.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Function.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Maybe.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Ix.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/List.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/Set.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/Data/BitVector.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /<>/bali-phy-3.6.0+dfsg/haskell/System/Environment.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/System Installing /<>/bali-phy-3.6.0+dfsg/haskell/Compiler/IO.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/bali-phy-3.6.0+dfsg/haskell/Compiler/ST.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/bali-phy-3.6.0+dfsg/haskell/Compiler/Base.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/bali-phy-3.6.0+dfsg/haskell/Compiler/Enum.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/bali-phy-3.6.0+dfsg/haskell/Compiler/Real.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/bali-phy-3.6.0+dfsg/haskell/Compiler/Num.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /<>/bali-phy-3.6.0+dfsg/haskell/Bio/Sequence.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio Installing /<>/bali-phy-3.6.0+dfsg/haskell/Bio/Alignment.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio Installing /<>/bali-phy-3.6.0+dfsg/haskell/Bio/Alphabet.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio Installing /<>/bali-phy-3.6.0+dfsg/haskell/Bio/Alignment/Matrix.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment Installing /<>/bali-phy-3.6.0+dfsg/haskell/Bio/Alignment/Pairwise.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment Installing /<>/bali-phy-3.6.0+dfsg/haskell/Tree/Newick.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Tree Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Random.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Mixture.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Geometric.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/DirichletProcess.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Laplace.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Normal.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Cauchy.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Gamma.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Bernoulli.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Binomial.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/FakeDist.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Poisson.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Discrete.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/ExpTransform.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Exponential.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Beta.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Uniform.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/RandomAlignment.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/List.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Dirichlet.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Categorical.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/Probability/Distribution/Tree.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /<>/bali-phy-3.6.0+dfsg/haskell/BAliPhy/ATModel.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy Installing /<>/bali-phy-3.6.0+dfsg/haskell/BAliPhy/ATModel/DataPartition.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy/ATModel Installing /<>/bali-phy-3.6.0+dfsg/haskell/Control/DeepSeq.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Control Installing /<>/bali-phy-3.6.0+dfsg/haskell/Control/Monad.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Control Installing /<>/bali-phy-3.6.0+dfsg/haskell/SModel/Doublets.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/bali-phy-3.6.0+dfsg/haskell/SModel/Nucleotides.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/bali-phy-3.6.0+dfsg/haskell/SModel/Codons.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/bali-phy-3.6.0+dfsg/haskell/SModel/Frequency.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/bali-phy-3.6.0+dfsg/haskell/SModel/ReversibleMarkov.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /<>/bali-phy-3.6.0+dfsg/haskell/SModel/Likelihood.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing subdir /<>/bali-phy-3.6.0+dfsg/bindings to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/letter_pairs.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/standard_code.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/dna.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/sin.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/getAminoAcids.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/rna.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/aa.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/tan.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/letters.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/mul.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/num_branches.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/uniform_discretize.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/cos.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/log.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/getNucleotides.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/take.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/zipWith.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/intToDouble.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/unit_mixture.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/sqrt.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/map.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/quantile.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/replicate.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/codons.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/exp.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/zip.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/length.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/add.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/sub.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/div.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/constructors/Cons.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors Installing /<>/bali-phy-3.6.0+dfsg/bindings/functions/constructors/Nil.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/tn93.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/f.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/m2a.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/dNdS.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/lg08_freq.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/gtr.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/fMutSel0.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/x2.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/gtr_sym.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/get_q.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/m3_test.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/m3.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/x2_sym.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/lg08.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/f61.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/mg94k.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/mg94.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/f1x4.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/hky85.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/multi_rate.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/rs05.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/gwF.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/gy94_ext.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/m2a_test.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/markov_modulate_mixture.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/x3_sym.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/fe.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/k80.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/jtt.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/mut_sel_aa.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/mut_sel.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/inv.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/equ.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/mixture.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/f81.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/mg94_ext.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/rs07_relaxed_rates.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/x3x3.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/density.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/wag_freq.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/m8a.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/sample.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/scaled_mixture.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/m7.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/fMutSel.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/hky85_sym.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/gy94.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/multiMixtureModel.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/m8a_test.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/branch_site.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/tn93_sym.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/x3.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/parameter_mixture.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/m1a.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/f3x4.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/x2x2.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/rs07.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/m8.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/empirical.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/jc69.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/wag.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/pam.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/rna_16a.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/Covarion/ts98.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/Covarion/galtier01.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/Covarion/wang07.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/Covarion/huelsenbeck02.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/Rates/log_normal.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/Rates/free.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/Rates/gamma.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing /<>/bali-phy-3.6.0+dfsg/bindings/models/Frequencies/uniform.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Frequencies Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/geometric.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/cauchy.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/poisson.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/log_gamma.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/log_laplace.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/beta.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/uniform.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/log_normal.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/symmetric_dirichlet.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/uniform_int.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/exponential.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/shifted_exponential.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/bernoulli.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/symmetric_dirichlet_on.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/binomial.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/iid.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/gamma.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/normal.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/shifted_gamma.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /<>/bali-phy-3.6.0+dfsg/bindings/distributions/laplace.json to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing subdir /<>/bali-phy-3.6.0+dfsg/help to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /<>/bali-phy-3.6.0+dfsg/help/alphabets.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /<>/bali-phy-3.6.0+dfsg/help/parameters.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /<>/bali-phy-3.6.0+dfsg/help/parameters/priors.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/parameters Installing /<>/bali-phy-3.6.0+dfsg/help/alphabets/genetic-code.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /<>/bali-phy-3.6.0+dfsg/help/alphabets/Triplets.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /<>/bali-phy-3.6.0+dfsg/help/alphabets/Doublets.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /<>/bali-phy-3.6.0+dfsg/help/alphabets/Codons.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /<>/bali-phy-3.6.0+dfsg/help/commands/set.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/tree.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/enable.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/alphabet.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/imodel.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/print.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/unalign.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/model.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/pre-burnin.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/align.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/seed.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/name.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/branch-lengths.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/subsample.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/package-path.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/test.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/scale.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/version.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/iterations.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/config.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/verbose.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/link.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/smodel.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/disable.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /<>/bali-phy-3.6.0+dfsg/help/commands/Rao-Blackwellize.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing subdir /<>/bali-phy-3.6.0+dfsg/examples to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples Installing /<>/bali-phy-3.6.0+dfsg/examples/models/Demo5.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/bali-phy-3.6.0+dfsg/examples/models/Demo3.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/bali-phy-3.6.0+dfsg/examples/models/Demo6.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/bali-phy-3.6.0+dfsg/examples/models/Coalmine.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/bali-phy-3.6.0+dfsg/examples/models/Demo1.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/bali-phy-3.6.0+dfsg/examples/models/Demo2.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/bali-phy-3.6.0+dfsg/examples/models/Airline.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/bali-phy-3.6.0+dfsg/examples/models/Demo4.hs to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/trp-tyr/tyr.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/trp-tyr/trp.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Globins/10-globins.xml to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Globins/some.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Globins/few-clustalw.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Globins/bglobin.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Globins/few.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Globins/10-globins-Lunter.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Globins/globins.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Globins/few-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Globins/many.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Globins/few-clustalw.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Globins/many-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/lrRNA/mollusc.gb to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/lrRNA/mollusc12.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/lrRNA/mollusc.rna.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/lrRNA/keep.pl to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/lrRNA/NOTES.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/lrRNA/mollusc.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/5d-clustalw.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/48b.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/12d-clustalw.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/12d-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/12d.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/5d.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/25-mafft.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/12d-clustalw.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/5d-clustalw.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/5d-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/48b-clustalw.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/EF-Tu/48b-clustalw.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/ferns/orig.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/ferns/orig.nex to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/ferns/config.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/ferns/config2.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/ferns/README.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/ferns/cleaned.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/76.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30-clustalw.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/76.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/37.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/additional.accessions to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/37-clustalw.ph to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/37-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30-clustalw.ph to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/37.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/37-clustalw.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/76-muscle.ph to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/76-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30.aln to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/37-muscle.ph to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/76-clustalw.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/76-clustalw.ph to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30-muscle.ph to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/other.accessions to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30.ph to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/30.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/table1.accessions to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/microbotryum/paper.txt to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/5d-clustalw.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-clustalw.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-clustalw.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-fsa.ph to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-poy.command to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-poy.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/5d.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-poy.tree to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-t-coffee.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-t-coffee.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/5d-clustalw.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-tcoffee.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/5d-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-poy.trees to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-fsa.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-t-coffee.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-t-coffee.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-clustalw.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-clustalw.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-fsa.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-muscle.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-fsa.ph to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-tcoffee.dnd to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/lectin.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/haloperoxidase.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/papain.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/lysozyme.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/rr_receiver.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/legume_lectin.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/subtilase.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Miklos-2008/annexin.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/HIV/HIVSIV.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/env-common.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/env-clustal.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/pol.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/env.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/HIV/chain-2005/pol-common.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/ITS/ITS2-trimmed.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/ITS/ITS1-trimmed.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/ITS/5.8S.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Enolase/enolase-38.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /<>/bali-phy-3.6.0+dfsg/examples/sequences/Enolase/enolase-38-trimmed.fasta to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing src/bali-phy/bali-phy to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/builtins/Array.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Data.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Prelude.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alphabet.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Pair.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Modifiables.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alignment.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/PopGen.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Distribution.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Range.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SModel.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/MCMC.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Vector.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Environment.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SMC.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Real.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Bits.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Foreign.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Text.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Char.so to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/model_P to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/statreport to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/stats-select to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/alignment-gild to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/alignment-consensus to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/alignment-max to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/alignment-chop-internal to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/alignment-indices to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/alignment-info to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/alignment-cat to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/alignment-translate to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/alignment-find to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/trees-consensus to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/tree-mean-lengths to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/mctree-mean-lengths to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/trees-to-SRQ to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/pickout to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/cut-range to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/trees-distances to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/alignment-thin to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/alignments-diff to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/tree-tool to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/alignment-distances to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/alignment-draw to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/trees-bootstrap to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/draw-tree to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/extract-ancestors to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/summarize-ancestors to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing src/bali-subsample to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing doc/bali-phy.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/model_P.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/statreport.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/stats-select.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-gild.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-consensus.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-max.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-chop-internal.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-indices.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-info.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-cat.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-translate.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-find.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-consensus.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/tree-mean-lengths.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/mctree-mean-lengths.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-to-SRQ.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/pickout.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/cut-range.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-distances.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-thin.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignments-diff.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/tree-tool.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-distances.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-draw.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-bootstrap.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/draw-tree.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/extract-ancestors.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/summarize-ancestors.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bali-subsample.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bp-analyze.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bali-phy-pkg.1 to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/share/man/man1 Installing /<>/bali-phy-3.6.0+dfsg/scripts/bp-analyze to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing /<>/bali-phy-3.6.0+dfsg/scripts/bali-phy-pkg to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/bin Installing /<>/bali-phy-3.6.0+dfsg/scripts/compare-runs.R to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.6.0+dfsg/scripts/compare-runs2.R to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.6.0+dfsg/scripts/tree-plot.R to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /<>/bali-phy-3.6.0+dfsg/scripts/tree-plot-3D.R to /<>/bali-phy-3.6.0+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec dh_installdocs -a -O--buildsystem=meson dh_installchangelogs -a -O--buildsystem=meson dh_installman -a -O--buildsystem=meson dh_installsystemduser -a -O--buildsystem=meson dh_lintian -a -O--buildsystem=meson dh_perl -a -O--buildsystem=meson dh_link -a -O--buildsystem=meson dh_strip_nondeterminism -a -O--buildsystem=meson dh_compress -a -O--buildsystem=meson dh_fixperms -a -O--buildsystem=meson dh_missing -a -O--buildsystem=meson dh_dwz -a -a -O--buildsystem=meson dwz: debian/bali-phy/usr/bin/alignment-cat: .debug_info section not present dwz: debian/bali-phy/usr/bin/alignment-chop-internal: .debug_info section not present dwz: debian/bali-phy/usr/bin/alignment-consensus: .debug_info section not present dwz: debian/bali-phy/usr/bin/alignment-distances: .debug_info section not present dwz: debian/bali-phy/usr/bin/alignment-draw: .debug_info section not present dwz: debian/bali-phy/usr/bin/alignment-find: .debug_info section not present dwz: debian/bali-phy/usr/bin/alignment-gild: .debug_info section not present dwz: debian/bali-phy/usr/bin/alignment-indices: .debug_info section not present dwz: debian/bali-phy/usr/bin/alignment-info: .debug_info section not present dwz: debian/bali-phy/usr/bin/alignment-max: .debug_info section not present dwz: debian/bali-phy/usr/bin/alignment-thin: .debug_info section not present dwz: debian/bali-phy/usr/bin/alignment-translate: .debug_info section not present dwz: debian/bali-phy/usr/bin/alignments-diff: .debug_info section not present dwz: debian/bali-phy/usr/bin/bali-phy: .debug_info section not present dwz: debian/bali-phy/usr/bin/bali-subsample: .debug_info section not present dwz: debian/bali-phy/usr/bin/cut-range: .debug_info section not present dwz: debian/bali-phy/usr/bin/draw-tree: .debug_info section not present dwz: debian/bali-phy/usr/bin/extract-ancestors: .debug_info section not present dwz: debian/bali-phy/usr/bin/mctree-mean-lengths: .debug_info section not present dwz: debian/bali-phy/usr/bin/model_P: .debug_info section not present dwz: debian/bali-phy/usr/bin/pickout: .debug_info section not present dwz: debian/bali-phy/usr/bin/statreport: .debug_info section not present dwz: debian/bali-phy/usr/bin/stats-select: .debug_info section not present dwz: debian/bali-phy/usr/bin/summarize-ancestors: .debug_info section not present dwz: debian/bali-phy/usr/bin/tree-mean-lengths: .debug_info section not present dwz: debian/bali-phy/usr/bin/tree-tool: .debug_info section not present dwz: debian/bali-phy/usr/bin/trees-bootstrap: .debug_info section not present dwz: debian/bali-phy/usr/bin/trees-consensus: .debug_info section not present dwz: debian/bali-phy/usr/bin/trees-distances: .debug_info section not present dwz: debian/bali-phy/usr/bin/trees-to-SRQ: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Alignment.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Alphabet.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Array.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Bits.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Char.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Data.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Distribution.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Environment.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Foreign.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/MCMC.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Modifiables.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Pair.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/PopGen.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Prelude.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Range.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Real.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/SMC.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/SModel.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Text.so: .debug_info section not present dwz: debian/bali-phy/usr/lib/bali-phy/Vector.so: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -a -a -O--buildsystem=meson dh_makeshlibs -a -a -O--buildsystem=meson dh_shlibdeps -a -a -O--buildsystem=meson dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _Z13geometric_pdf12log_double_tS_i: it's probably a plugin dpkg-shlibdeps: warning: 32 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin dpkg-shlibdeps: warning: 26 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol _ZNK6Codons9translateEi: it's probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Text.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _Z7uniformv: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Foreign.so contains an unresolvable reference to symbol _ZNK6Object5printB5cxx11Ev: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol _ZplRK14expression_refS1_: it's probably a plugin dpkg-shlibdeps: warning: 26 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol log_verbose: it's probably a plugin dpkg-shlibdeps: warning: 43 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol _ZTV10expression: it's probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Char.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Real.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol _Z7join_opR13OperationArgs: it's probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol _Z16portable_getlineRSiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _Z5splitRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEc: it's probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _ZNK20pairwise_alignment_t7length1Ev: it's probably a plugin dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Bits.so contains an unresolvable reference to symbol _ZN14expression_refC1ERKb: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=meson dh_gencontrol -a -O--buildsystem=meson dh_md5sums -a -O--buildsystem=meson dh_builddeb -a -O--buildsystem=meson INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing bali-phy (in debian/bali-phy); do_strip: , oemstrip: pkgstriptranslations: processing bali-phy-dbgsym (in debian/.debhelper/bali-phy/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/bali-phy/DEBIAN/control, package bali-phy, directory debian/bali-phy pkgstripfiles: Truncating usr/share/doc/bali-phy/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/bali-phy/dbgsym-root/DEBIAN/control, package bali-phy-dbgsym, directory debian/.debhelper/bali-phy/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package bali-phy ... dpkg-deb: building package 'bali-phy-dbgsym' in 'debian/.debhelper/scratch-space/build-bali-phy/bali-phy-dbgsym_3.6.0+dfsg-1_s390x.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'bali-phy' in '../bali-phy_3.6.0+dfsg-1_s390x.deb'. Renaming bali-phy-dbgsym_3.6.0+dfsg-1_s390x.deb to bali-phy-dbgsym_3.6.0+dfsg-1_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../bali-phy_3.6.0+dfsg-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-02-07T17:22:16Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bali-phy_3.6.0+dfsg-1_s390x.changes: ------------------------------------ Format: 1.8 Date: Sat, 06 Feb 2021 18:56:18 -0800 Source: bali-phy Binary: bali-phy Architecture: s390x Version: 3.6.0+dfsg-1 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Benjamin Redelings Description: bali-phy - Bayesian Inference of Alignment and Phylogeny Changes: bali-phy (3.6.0+dfsg-1) unstable; urgency=medium . [ Benjamin Redelings ] * New upstream version 3.6.0+dfsg * Update standards version. * Require meson >= 0.53 * Remove unused linitian-override * Add -DNDEBUG to build rules. * Add lintian-override. . [ Andreas Tille ] * Standards-Version: 4.5.1 (routine-update) Checksums-Sha1: 20d971155bae98f6588ab9dd9a36f6e5acd5411f 510316 bali-phy-dbgsym_3.6.0+dfsg-1_s390x.ddeb fe7849c8ad09c8f997485408cfce2f1b3f5bc9dc 9488 bali-phy_3.6.0+dfsg-1_s390x.buildinfo 7c17367449d2267654289fde4c572bbbd03ad844 5694064 bali-phy_3.6.0+dfsg-1_s390x.deb Checksums-Sha256: 4343cfd57a02a5fbe702757c17f30dbd9be6f1c291b76bb35f490d9464dabeba 510316 bali-phy-dbgsym_3.6.0+dfsg-1_s390x.ddeb 439eff38c0f0e47e0522a5e46c75870310215447ba41f3efaacebe1da04f3d7b 9488 bali-phy_3.6.0+dfsg-1_s390x.buildinfo 91423986ac3712afd12ae146e125364742a345fa74b25b9cc88916714897a03f 5694064 bali-phy_3.6.0+dfsg-1_s390x.deb Files: 2500d164f6d0847e1e76211f9b8e7b03 510316 debug optional bali-phy-dbgsym_3.6.0+dfsg-1_s390x.ddeb db7f0d04c74d5e93e9fe41bc6681c93b 9488 science optional bali-phy_3.6.0+dfsg-1_s390x.buildinfo 0e17d6650ecd4c383452ab1a2296c76b 5694064 science optional bali-phy_3.6.0+dfsg-1_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: bali-phy Binary: bali-phy bali-phy-dbgsym Architecture: s390x Version: 3.6.0+dfsg-1 Checksums-Md5: 2500d164f6d0847e1e76211f9b8e7b03 510316 bali-phy-dbgsym_3.6.0+dfsg-1_s390x.ddeb 0e17d6650ecd4c383452ab1a2296c76b 5694064 bali-phy_3.6.0+dfsg-1_s390x.deb Checksums-Sha1: 20d971155bae98f6588ab9dd9a36f6e5acd5411f 510316 bali-phy-dbgsym_3.6.0+dfsg-1_s390x.ddeb 7c17367449d2267654289fde4c572bbbd03ad844 5694064 bali-phy_3.6.0+dfsg-1_s390x.deb Checksums-Sha256: 4343cfd57a02a5fbe702757c17f30dbd9be6f1c291b76bb35f490d9464dabeba 510316 bali-phy-dbgsym_3.6.0+dfsg-1_s390x.ddeb 91423986ac3712afd12ae146e125364742a345fa74b25b9cc88916714897a03f 5694064 bali-phy_3.6.0+dfsg-1_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Sun, 07 Feb 2021 17:22:16 +0000 Build-Path: /<>/bali-phy-3.6.0+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-2ubuntu1), autopoint (= 0.21-3ubuntu2), autotools-dev (= 20180224.1+nmu1), base-files (= 11ubuntu16), base-passwd (= 3.5.49), bash (= 5.1-1ubuntu1), binutils (= 2.36-2ubuntu3), binutils-common (= 2.36-2ubuntu3), binutils-s390x-linux-gnu (= 2.36-2ubuntu3), bsdextrautils (= 2.36.1-1ubuntu2), bsdutils (= 1:2.36.1-1ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-4ubuntu2), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.1-18ubuntu2), dash (= 0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1), debconf (= 1.5.74), debhelper (= 13.3.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.11.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.7.1ubuntu2), dpkg-dev (= 1.20.7.1ubuntu2), dwz (= 0.13+20210201-1), file (= 1:5.39-3), findutils (= 4.7.0-1ubuntu2), fontconfig-config (= 2.13.1-4.2ubuntu2), fonts-dejavu-core (= 2.37-2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.1-18ubuntu2), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.1-18ubuntu2), gcc-10-base (= 10.2.1-18ubuntu2), gcc-11-base (= 11-20210203-0ubuntu1), gettext (= 0.21-3ubuntu2), gettext-base (= 0.21-3ubuntu2), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-2ubuntu3), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.1-18ubuntu2), libatomic1 (= 11-20210203-0ubuntu1), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:3.0-2ubuntu1), libaudit1 (= 1:3.0-2ubuntu1), libbinutils (= 2.36-2ubuntu3), libblkid-dev (= 2.36.1-1ubuntu2), libblkid1 (= 2.36.1-1ubuntu2), libboost-chrono-dev (= 1.74.0.3ubuntu3), libboost-chrono1.74-dev (= 1.74.0-3ubuntu4), libboost-chrono1.74.0 (= 1.74.0-3ubuntu4), libboost-dev (= 1.74.0.3ubuntu3), libboost-filesystem-dev (= 1.74.0.3ubuntu3), libboost-filesystem1.74-dev (= 1.74.0-3ubuntu4), libboost-filesystem1.74.0 (= 1.74.0-3ubuntu4), libboost-program-options-dev (= 1.74.0.3ubuntu3), libboost-program-options1.74-dev (= 1.74.0-3ubuntu4), libboost-program-options1.74.0 (= 1.74.0-3ubuntu4), libboost-random-dev (= 1.74.0.3ubuntu3), libboost-random1.74-dev (= 1.74.0-3ubuntu4), libboost-random1.74.0 (= 1.74.0-3ubuntu4), libboost-system-dev (= 1.74.0.3ubuntu3), libboost-system1.74-dev (= 1.74.0-3ubuntu4), libboost-system1.74.0 (= 1.74.0-3ubuntu4), libboost1.74-dev (= 1.74.0-3ubuntu4), libbrotli-dev (= 1.0.9-2build2), libbrotli1 (= 1.0.9-2build2), libbsd0 (= 0.11.1-1), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.33-0ubuntu2), libc-dev-bin (= 2.33-0ubuntu2), libc6 (= 2.33-0ubuntu2), libc6-dev (= 2.33-0ubuntu2), libcairo-gobject2 (= 1.16.0-5), libcairo-script-interpreter2 (= 1.16.0-5), libcairo2 (= 1.16.0-5), libcairo2-dev (= 1.16.0-5), libcap-ng0 (= 0.7.9-2.2build1), libcap2 (= 1:2.44-1), libcc1-0 (= 11-20210203-0ubuntu1), libcmark-gfm-extensions0 (= 0.29.0.gfm.0-6), libcmark-gfm0 (= 0.29.0.gfm.0-6), libcom-err2 (= 1.45.7-1ubuntu1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.36-2ubuntu3), libctf0 (= 2.36-2ubuntu3), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.256ubuntu1), libdebhelper-perl (= 13.3.1ubuntu1), libdpkg-perl (= 1.20.7.1ubuntu2), libeigen3-dev (= 3.3.9-2), libelf1 (= 0.182+20210205-1), libexpat1 (= 2.2.10-1), libexpat1-dev (= 2.2.10-1), libffi-dev (= 3.4~20200819gead65ca871-0ubuntu3), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-stripnondeterminism-perl (= 1.11.0-1), libfontconfig-dev (= 2.13.1-4.2ubuntu2), libfontconfig1 (= 2.13.1-4.2ubuntu2), libfontconfig1-dev (= 2.13.1-4.2ubuntu2), libfreetype-dev (= 2.10.4+dfsg-1), libfreetype6 (= 2.10.4+dfsg-1), libfreetype6-dev (= 2.10.4+dfsg-1), libgcc-10-dev (= 10.2.1-18ubuntu2), libgcc-s1 (= 11-20210203-0ubuntu1), libgcrypt20 (= 1.8.7-2ubuntu1), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libglib2.0-0 (= 2.66.6-1), libglib2.0-bin (= 2.66.6-1), libglib2.0-data (= 2.66.6-1), libglib2.0-dev (= 2.66.6-1), libglib2.0-dev-bin (= 2.66.6-1), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgomp1 (= 11-20210203-0ubuntu1), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-4), libice-dev (= 2:1.0.10-1), libice6 (= 2:1.0.10-1), libicu67 (= 67.1-6ubuntu1), libisl23 (= 0.23-1), libitm1 (= 11-20210203-0ubuntu1), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), liblz4-1 (= 1.9.3-0ubuntu1), liblzma5 (= 5.2.4-1ubuntu1), liblzo2-2 (= 2.10-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmd0 (= 1.0.3-1), libmount-dev (= 2.36.1-1ubuntu2), libmount1 (= 2.36.1-1ubuntu2), libmpc3 (= 1.2.0-1), libmpdec3 (= 2.5.1-1), libmpfr6 (= 4.1.0-3), libncursesw6 (= 6.2+20201114-2), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre16-3 (= 2:8.39-13), libpcre2-16-0 (= 10.35-2ubuntu1), libpcre2-32-0 (= 10.35-2ubuntu1), libpcre2-8-0 (= 10.35-2ubuntu1), libpcre2-dev (= 10.35-2ubuntu1), libpcre2-posix2 (= 10.35-2ubuntu1), libpcre3 (= 2:8.39-13), libpcre3-dev (= 2:8.39-13), libpcre32-3 (= 2:8.39-13), libpcrecpp0v5 (= 2:8.39-13), libperl5.32 (= 5.32.1-2), libpipeline1 (= 1.5.3-1), libpixman-1-0 (= 0.40.0-1), libpixman-1-dev (= 0.40.0-1), libpng-dev (= 1.6.37-3), libpng16-16 (= 1.6.37-3), libpthread-stubs0-dev (= 0.4-1), libpython3-stdlib (= 3.9.1-1), libpython3.9-minimal (= 3.9.1-4), libpython3.9-stdlib (= 3.9.1-4), librange-v3-dev (= 0.11.0-1), libreadline8 (= 8.1-1), libseccomp2 (= 2.4.3-1ubuntu6), libselinux1 (= 3.1-2build2), libselinux1-dev (= 3.1-2build2), libsepol1 (= 3.1-1), libsepol1-dev (= 3.1-1), libsigsegv2 (= 2.13-1), libsm-dev (= 2:1.2.3-1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.36.1-1ubuntu2), libsqlite3-0 (= 3.34.1-1), libssl1.1 (= 1.1.1f-1ubuntu5), libstdc++-10-dev (= 10.2.1-18ubuntu2), libstdc++6 (= 11-20210203-0ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.1-4ubuntu1), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtool (= 2.4.6-15), libubsan1 (= 10.2.1-18ubuntu2), libuchardet0 (= 0.0.7-1), libudev1 (= 247.1-4ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-1ubuntu2), libx11-6 (= 2:1.7.0-2), libx11-data (= 2:1.7.0-2), libx11-dev (= 2:1.7.0-2), libxau-dev (= 1:1.0.9-0ubuntu1), libxau6 (= 1:1.0.9-0ubuntu1), libxcb-render0 (= 1.14-2.1), libxcb-render0-dev (= 1.14-2.1), libxcb-shm0 (= 1.14-2.1), libxcb-shm0-dev (= 1.14-2.1), libxcb1 (= 1.14-2.1), libxcb1-dev (= 1.14-2.1), libxdmcp-dev (= 1:1.1.3-0ubuntu1), libxdmcp6 (= 1:1.1.3-0ubuntu1), libxext-dev (= 2:1.3.4-0ubuntu1), libxext6 (= 2:1.3.4-0ubuntu1), libxml2 (= 2.9.10+dfsg-6.3build1), libxrender-dev (= 1:0.9.10-1), libxrender1 (= 1:0.9.10-1), libzstd1 (= 1.4.8+dfsg-1), linux-libc-dev (= 5.10.0-14.15), login (= 1:4.8.1-1ubuntu8), lsb-base (= 11.1.0ubuntu2), lto-disabled-list (= 1), m4 (= 1.4.18-5), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), media-types (= 4.0.0), meson (= 0.56.2-1), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), ninja-build (= 1.10.1-1), nlohmann-json3-dev (= 3.9.1-1), pandoc (= 2.9.2.1-1ubuntu3), pandoc-data (= 2.9.2.1-1ubuntu3), patch (= 2.7.6-7), perl (= 5.32.1-2), perl-base (= 5.32.1-2), perl-modules-5.32 (= 5.32.1-2), pkg-config (= 0.29.2-1ubuntu1), po-debconf (= 1.0.21+nmu1), python3 (= 3.9.1-1), python3-distutils (= 3.9.1-1ubuntu1), python3-lib2to3 (= 3.9.1-1ubuntu1), python3-minimal (= 3.9.1-1), python3-pkg-resources (= 52.0.0-1), python3.9 (= 3.9.1-4), python3.9-minimal (= 3.9.1-4), readline-common (= 8.1-1), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.32+dfsg-1), tzdata (= 2021a-1ubuntu1), ucf (= 3.0043), util-linux (= 2.36.1-1ubuntu2), uuid-dev (= 2.36.1-1ubuntu2), x11-common (= 1:7.7+19ubuntu15), x11proto-core-dev (= 2020.1-1), x11proto-dev (= 2020.1-1), x11proto-xext-dev (= 2020.1-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612666578" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bali-phy_3.6.0+dfsg-1_s390x.deb ------------------------------- new Debian package, version 2.0. size 5694064 bytes: control archive=13196 bytes. 1244 bytes, 22 lines control 42418 bytes, 495 lines md5sums Package: bali-phy Version: 3.6.0+dfsg-1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 37574 Depends: libboost-chrono1.74.0 (>= 1.74.0), libboost-filesystem1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libboost-random1.74.0 (>= 1.74.0), libc6 (>= 2.29), libcairo2 (>= 1.4.10), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), perl:any, python3 Recommends: r-base, gnuplot Suggests: figtree, seaview Section: science Priority: optional Homepage: http://www.bali-phy.org Description: Bayesian Inference of Alignment and Phylogeny BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot. . BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. 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Install-Time: 23 Job: bali-phy_3.6.0+dfsg-1.dsc Machine Architecture: s390x Package: bali-phy Package-Time: 387 Source-Version: 3.6.0+dfsg-1 Space: n/a Status: successful Version: 3.6.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2021-02-07T17:22:16Z Build needed 00:06:27, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20995611 Scanning for processes to kill in build PACKAGEBUILD-20995611