https://launchpad.net/ubuntu/+source/ball/1.4.3~beta1-4/+build/13653354 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-004 4.4.0-119-generic #143-Ubuntu SMP Mon Apr 2 16:10:02 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_160 python-lpbuildd_160 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 21 Apr 12:05:08 ntpdate[1830]: adjust time server 10.211.37.1 offset -0.031320 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13653354 /home/buildd/filecache-default/b70461af4419c13dbae7acd6fe74d075a1a9550f Creating target for build PACKAGEBUILD-13653354 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13653354 Starting target for build PACKAGEBUILD-13653354 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13653354 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13653354 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13653354 Updating target for build PACKAGEBUILD-13653354 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf Packages [972 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe armhf Packages [8264 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4941 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf Packages [9104 B] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [7712 B] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe armhf Packages [27.6 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [20.0 kB] Fetched 15.4 MB in 6s (2559 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgdbm3 libgssapi-krb5-2 libisl15 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmpfr4 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 libustr-1.0-1 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: dirmngr gcc-8-base gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm libargon2-0 libcom-err2 libcryptsetup12 libext2fs2 libgdbm-compat4 libgdbm5 libisl19 libjson-c3 libmpfr6 libnghttp2-14 libssl1.1 libunistring2 libzstd1 The following packages will be upgraded: adduser advancecomp apt apt-transport-https base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential ca-certificates coreutils cpp cpp-7 dash debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fakeroot fdisk findutils g++ g++-7 gcc gcc-7 gcc-7-base gnupg gnupg-agent gpgv hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan4 libasn1-8-heimdal libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi6 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libidn11 libidn2-0 libip4tc0 libisl15 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblockfile-bin liblockfile1 liblz4-1 libmount1 libmpc3 libncurses5 libncursesw5 libnettle6 libnpth0 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.26 libpng16-16 libprocps6 libpsl5 libreadline7 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base make mawk mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tzdata ubuntu-keyring util-linux 156 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. Need to get 61.7 MB of archives. After this operation, 6660 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main armhf base-files armhf 10.1ubuntu1 [58.2 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main armhf debianutils armhf 4.8.4 [84.5 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main armhf bash armhf 4.4.18-2ubuntu1 [552 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main armhf bsdutils armhf 1:2.31.1-0.4ubuntu3 [55.2 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf coreutils armhf 8.28-1ubuntu1 [1128 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main armhf perl-modules-5.26 all 5.26.1-6 [2760 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main armhf libgdbm5 armhf 1.14.1-6 [23.4 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main armhf libgdbm-compat4 armhf 1.14.1-6 [5764 B] Get:9 http://ftpmaster.internal/ubuntu bionic/main armhf libperl5.26 armhf 5.26.1-6 [2885 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main armhf perl armhf 5.26.1-6 [201 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main armhf perl-base armhf 5.26.1-6 [1290 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main armhf libc6-dev armhf 2.27-3ubuntu1 [1899 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main armhf libc-dev-bin armhf 2.27-3ubuntu1 [59.4 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf linux-libc-dev armhf 4.15.0-18.19 [997 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main armhf libc6 armhf 2.27-3ubuntu1 [2207 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main armhf libc-bin armhf 2.27-3ubuntu1 [464 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main armhf gcc-8-base armhf 8-20180414-1ubuntu2 [18.2 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main armhf libgcc1 armhf 1:8-20180414-1ubuntu2 [37.1 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main armhf libzstd1 armhf 1.3.3+dfsg-2ubuntu1 [168 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main armhf dpkg armhf 1.19.0.5ubuntu2 [1095 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main armhf dash armhf 0.5.8-2.10 [80.4 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main armhf libcom-err2 armhf 1.44.1-1 [9076 B] Get:23 http://ftpmaster.internal/ubuntu bionic/main armhf libcomerr2 armhf 1.44.1-1 [2696 B] Get:24 http://ftpmaster.internal/ubuntu bionic/main armhf libext2fs2 armhf 1.44.1-1 [145 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main armhf e2fslibs armhf 1.44.1-1 [2700 B] Get:26 http://ftpmaster.internal/ubuntu bionic/main armhf e2fsprogs armhf 1.44.1-1 [369 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main armhf findutils armhf 4.6.0+git+20170828-2 [277 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main armhf hostname armhf 3.20 [10.4 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main armhf login armhf 1:4.5-1ubuntu1 [303 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main armhf libncurses5 armhf 6.1-1ubuntu1 [74.8 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main armhf libtinfo5 armhf 6.1-1ubuntu1 [68.4 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main armhf ncurses-bin armhf 6.1-1ubuntu1 [155 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main armhf libncursesw5 armhf 6.1-1ubuntu1 [95.7 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main armhf sed armhf 4.4-2 [175 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main armhf libuuid1 armhf 2.31.1-0.4ubuntu3 [19.2 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main armhf libblkid1 armhf 2.31.1-0.4ubuntu3 [112 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main armhf libsmartcols1 armhf 2.31.1-0.4ubuntu3 [74.3 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main armhf libfdisk1 armhf 2.31.1-0.4ubuntu3 [151 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main armhf libpcre3 armhf 2:8.39-9 [209 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main armhf libselinux1 armhf 2.7-2build2 [58.9 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main armhf libmount1 armhf 2.31.1-0.4ubuntu3 [122 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main armhf fdisk armhf 2.31.1-0.4ubuntu3 [97.6 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main armhf util-linux armhf 2.31.1-0.4ubuntu3 [845 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main armhf base-passwd armhf 3.5.44 [45.9 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main armhf init-system-helpers all 1.51 [37.3 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main armhf ncurses-base all 6.1-1ubuntu1 [17.3 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main armhf sysvinit-utils armhf 2.88dsf-59.10ubuntu1 [17.2 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main armhf liblz4-1 armhf 0.0~r131-2ubuntu3 [43.9 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main armhf libstdc++6 armhf 8-20180414-1ubuntu2 [349 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libudev1 armhf 237-3ubuntu9 [48.3 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main armhf libapt-pkg5.0 armhf 1.6.1 [728 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main armhf libaudit-common all 1:2.8.2-1ubuntu1 [4132 B] Get:53 http://ftpmaster.internal/ubuntu bionic/main armhf libcap-ng0 armhf 0.7.7-3.1 [9816 B] Get:54 http://ftpmaster.internal/ubuntu bionic/main armhf libaudit1 armhf 1:2.8.2-1ubuntu1 [35.5 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main armhf debconf all 1.5.66 [124 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main armhf libpam0g armhf 1.1.8-3.6ubuntu2 [49.5 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main armhf libsemanage-common all 2.7-2build2 [6904 B] Get:58 http://ftpmaster.internal/ubuntu bionic/main armhf libsemanage1 armhf 2.7-2build2 [72.1 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main armhf libpam-modules-bin armhf 1.1.8-3.6ubuntu2 [32.4 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main armhf libpam-modules armhf 1.1.8-3.6ubuntu2 [224 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main armhf passwd armhf 1:4.5-1ubuntu1 [769 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main armhf adduser all 3.116ubuntu1 [163 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main armhf libgpg-error0 armhf 1.27-6 [33.6 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main armhf libgcrypt20 armhf 1.8.1-4ubuntu1 [364 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main armhf gpgv armhf 2.2.4-1ubuntu1 [166 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main armhf ubuntu-keyring all 2018.02.28 [20.7 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main armhf libunistring2 armhf 0.9.9-0ubuntu1 [352 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main armhf libgmp10 armhf 2:6.1.2+dfsg-2 [182 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main armhf libnettle6 armhf 3.4-1 [123 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main armhf libhogweed4 armhf 3.4-1 [127 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main armhf libidn2-0 armhf 2.0.4-1.1build2 [46.1 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main armhf libffi6 armhf 3.2.1-8 [16.4 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main armhf libp11-kit0 armhf 0.23.9-2 [162 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main armhf libtasn1-6 armhf 4.13-2 [31.1 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main armhf libgnutls30 armhf 3.5.18-1ubuntu1 [585 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main armhf libseccomp2 armhf 2.3.1-2.1ubuntu4 [29.8 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main armhf apt armhf 1.6.1 [1122 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main armhf libargon2-0 armhf 0~20161029-1.1 [20.4 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main armhf libjson-c3 armhf 0.12.1-1.3 [19.6 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main armhf libdevmapper1.02.1 armhf 2:1.02.145-4.1ubuntu3 [117 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main armhf libcryptsetup12 armhf 2:2.0.2-1ubuntu1 [119 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main armhf libapparmor1 armhf 2.12-4ubuntu5 [27.3 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main armhf libcap2 armhf 1:2.25-1.2 [11.7 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main armhf libidn11 armhf 1.33-2.1ubuntu1 [43.4 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main armhf libip4tc0 armhf 1.6.1-2ubuntu2 [17.8 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main armhf libkmod2 armhf 24-1ubuntu3 [34.4 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main armhf mount armhf 2.31.1-0.4ubuntu3 [99.7 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main armhf libprocps6 armhf 2:3.3.12-3ubuntu1 [28.4 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main armhf lsb-base all 9.20170808ubuntu1 [12.5 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main armhf procps armhf 2:3.3.12-3ubuntu1 [214 kB] Get:91 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf systemd armhf 237-3ubuntu9 [2720 kB] Get:92 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libsystemd0 armhf 237-3ubuntu9 [185 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main armhf mawk armhf 1.3.3-17ubuntu3 [72.5 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main armhf init armhf 1.51 [5864 B] Get:95 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf systemd-sysv armhf 237-3ubuntu9 [11.6 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main armhf libpam-runtime all 1.1.8-3.6ubuntu2 [37.0 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/main armhf libss2 armhf 1.44.1-1 [9380 B] Get:98 http://ftpmaster.internal/ubuntu bionic/main armhf sensible-utils all 0.0.12 [14.8 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/main armhf libssl1.1 armhf 1.1.0g-2ubuntu3 [911 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/main armhf openssl armhf 1.1.0g-2ubuntu3 [510 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main armhf ca-certificates all 20180409 [151 kB] Get:102 http://ftpmaster.internal/ubuntu bionic/main armhf dmsetup armhf 2:1.02.145-4.1ubuntu3 [73.7 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main armhf readline-common all 7.0-3 [52.9 kB] Get:104 http://ftpmaster.internal/ubuntu bionic/main armhf libreadline7 armhf 7.0-3 [103 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/main armhf libslang2 armhf 2.3.1a-3ubuntu1 [381 kB] Get:106 http://ftpmaster.internal/ubuntu bionic/main armhf libsqlite3-0 armhf 3.22.0-1 [421 kB] Get:107 http://ftpmaster.internal/ubuntu bionic/main armhf tzdata all 2018d-1 [188 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/main armhf libgssapi-krb5-2 armhf 1.16-2build1 [101 kB] Get:109 http://ftpmaster.internal/ubuntu bionic/main armhf libkrb5-3 armhf 1.16-2build1 [233 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/main armhf libk5crypto3 armhf 1.16-2build1 [83.2 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/main armhf libkrb5support0 armhf 1.16-2build1 [27.5 kB] Get:112 http://ftpmaster.internal/ubuntu bionic/main armhf libkeyutils1 armhf 1.5.9-9.2ubuntu2 [7796 B] Get:113 http://ftpmaster.internal/ubuntu bionic/main armhf libpng16-16 armhf 1.6.34-1 [159 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main armhf libpsl5 armhf 0.19.1-5build1 [40.5 kB] Get:115 http://ftpmaster.internal/ubuntu bionic/main armhf libssl1.0.0 armhf 1.0.2n-1ubuntu5 [710 kB] Get:116 http://ftpmaster.internal/ubuntu bionic/main armhf multiarch-support armhf 2.27-3ubuntu1 [6912 B] Get:117 http://ftpmaster.internal/ubuntu bionic/main armhf advancecomp armhf 2.1-1 [166 kB] Get:118 http://ftpmaster.internal/ubuntu bionic/universe armhf apt-transport-https all 1.6.1 [1692 B] Get:119 http://ftpmaster.internal/ubuntu bionic/main armhf libbinutils armhf 2.30-15ubuntu1 [309 kB] Get:120 http://ftpmaster.internal/ubuntu bionic/main armhf binutils armhf 2.30-15ubuntu1 [3360 B] Get:121 http://ftpmaster.internal/ubuntu bionic/main armhf binutils-common armhf 2.30-15ubuntu1 [193 kB] Get:122 http://ftpmaster.internal/ubuntu bionic/main armhf binutils-arm-linux-gnueabihf armhf 2.30-15ubuntu1 [2175 kB] Get:123 http://ftpmaster.internal/ubuntu bionic/main armhf libgomp1 armhf 8-20180414-1ubuntu2 [66.6 kB] Get:124 http://ftpmaster.internal/ubuntu bionic/main armhf libatomic1 armhf 8-20180414-1ubuntu2 [7060 B] Get:125 http://ftpmaster.internal/ubuntu bionic/main armhf libasan4 armhf 7.3.0-16ubuntu3 [328 kB] Get:126 http://ftpmaster.internal/ubuntu bionic/main armhf libubsan0 armhf 7.3.0-16ubuntu3 [108 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main armhf libcilkrts5 armhf 7.3.0-16ubuntu3 [35.9 kB] Get:128 http://ftpmaster.internal/ubuntu bionic/main armhf g++-7 armhf 7.3.0-16ubuntu3 [6049 kB] Get:129 http://ftpmaster.internal/ubuntu bionic/main armhf gcc-7 armhf 7.3.0-16ubuntu3 [5943 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/main armhf libstdc++-7-dev armhf 7.3.0-16ubuntu3 [1535 kB] Get:131 http://ftpmaster.internal/ubuntu bionic/main armhf libgcc-7-dev armhf 7.3.0-16ubuntu3 [708 kB] Get:132 http://ftpmaster.internal/ubuntu bionic/main armhf libcc1-0 armhf 8-20180414-1ubuntu2 [32.7 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/main armhf cpp-7 armhf 7.3.0-16ubuntu3 [5296 kB] Get:134 http://ftpmaster.internal/ubuntu bionic/main armhf gcc-7-base armhf 7.3.0-16ubuntu3 [18.9 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/main armhf libisl19 armhf 0.19-1 [426 kB] Get:136 http://ftpmaster.internal/ubuntu bionic/main armhf libmpc3 armhf 1.1.0-1 [33.2 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/main armhf libmpfr6 armhf 4.0.1-1 [194 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/main armhf cpp armhf 4:7.3.0-3ubuntu2 [27.5 kB] Get:139 http://ftpmaster.internal/ubuntu bionic/main armhf gcc armhf 4:7.3.0-3ubuntu2 [5208 B] Get:140 http://ftpmaster.internal/ubuntu bionic/main armhf g++ armhf 4:7.3.0-3ubuntu2 [1576 B] Get:141 http://ftpmaster.internal/ubuntu bionic/main armhf make armhf 4.1-9.1ubuntu1 [142 kB] Get:142 http://ftpmaster.internal/ubuntu bionic/main armhf dpkg-dev all 1.19.0.5ubuntu2 [607 kB] Get:143 http://ftpmaster.internal/ubuntu bionic/main armhf libdpkg-perl all 1.19.0.5ubuntu2 [211 kB] Get:144 http://ftpmaster.internal/ubuntu bionic/main armhf patch armhf 2.7.6-2ubuntu1 [98.9 kB] Get:145 http://ftpmaster.internal/ubuntu bionic/main armhf build-essential armhf 12.4ubuntu1 [4752 B] Get:146 http://ftpmaster.internal/ubuntu bionic/main armhf gnupg-l10n all 2.2.4-1ubuntu1 [48.6 kB] Get:147 http://ftpmaster.internal/ubuntu bionic/main armhf libassuan0 armhf 2.5.1-2 [28.3 kB] Get:148 http://ftpmaster.internal/ubuntu bionic/main armhf gnupg armhf 2.2.4-1ubuntu1 [249 kB] Get:149 http://ftpmaster.internal/ubuntu bionic/universe armhf gnupg-agent all 2.2.4-1ubuntu1 [4544 B] Get:150 http://ftpmaster.internal/ubuntu bionic/main armhf gpgconf armhf 2.2.4-1ubuntu1 [105 kB] Get:151 http://ftpmaster.internal/ubuntu bionic/main armhf pinentry-curses armhf 1.1.0-1 [31.4 kB] Get:152 http://ftpmaster.internal/ubuntu bionic/main armhf libnpth0 armhf 1.5-3 [6632 B] Get:153 http://ftpmaster.internal/ubuntu bionic/main armhf gpg-agent armhf 2.2.4-1ubuntu1 [189 kB] Get:154 http://ftpmaster.internal/ubuntu bionic/main armhf gnupg-utils armhf 2.2.4-1ubuntu1 [106 kB] Get:155 http://ftpmaster.internal/ubuntu bionic/main armhf gpg armhf 2.2.4-1ubuntu1 [409 kB] Get:156 http://ftpmaster.internal/ubuntu bionic/main armhf gpg-wks-client armhf 2.2.4-1ubuntu1 [76.8 kB] Get:157 http://ftpmaster.internal/ubuntu bionic/main armhf gpg-wks-server armhf 2.2.4-1ubuntu1 [71.8 kB] Get:158 http://ftpmaster.internal/ubuntu bionic/main armhf gpgsm armhf 2.2.4-1ubuntu1 [183 kB] Get:159 http://ftpmaster.internal/ubuntu bionic/main armhf dirmngr armhf 2.2.4-1ubuntu1 [275 kB] Get:160 http://ftpmaster.internal/ubuntu bionic/main armhf libfakeroot armhf 1.22-2ubuntu1 [21.6 kB] Get:161 http://ftpmaster.internal/ubuntu bionic/main armhf fakeroot armhf 1.22-2ubuntu1 [60.3 kB] Get:162 http://ftpmaster.internal/ubuntu bionic/main armhf libroken18-heimdal armhf 7.5.0+dfsg-1 [34.1 kB] Get:163 http://ftpmaster.internal/ubuntu bionic/main armhf libasn1-8-heimdal armhf 7.5.0+dfsg-1 [136 kB] Get:164 http://ftpmaster.internal/ubuntu bionic/main armhf libnghttp2-14 armhf 1.30.0-1ubuntu1 [67.4 kB] Get:165 http://ftpmaster.internal/ubuntu bionic/main armhf libcurl3-gnutls armhf 7.58.0-2ubuntu3 [182 kB] Get:166 http://ftpmaster.internal/ubuntu bionic/main armhf libheimbase1-heimdal armhf 7.5.0+dfsg-1 [24.1 kB] Get:167 http://ftpmaster.internal/ubuntu bionic/main armhf libhcrypto4-heimdal armhf 7.5.0+dfsg-1 [76.5 kB] Get:168 http://ftpmaster.internal/ubuntu bionic/main armhf libwind0-heimdal armhf 7.5.0+dfsg-1 [47.2 kB] Get:169 http://ftpmaster.internal/ubuntu bionic/main armhf libhx509-5-heimdal armhf 7.5.0+dfsg-1 [87.9 kB] Get:170 http://ftpmaster.internal/ubuntu bionic/main armhf libkrb5-26-heimdal armhf 7.5.0+dfsg-1 [168 kB] Get:171 http://ftpmaster.internal/ubuntu bionic/main armhf libheimntlm0-heimdal armhf 7.5.0+dfsg-1 [13.1 kB] Get:172 http://ftpmaster.internal/ubuntu bionic/main armhf libgssapi3-heimdal armhf 7.5.0+dfsg-1 [78.8 kB] Get:173 http://ftpmaster.internal/ubuntu bionic/universe armhf libisl15 armhf 0.18-4 [423 kB] Get:174 http://ftpmaster.internal/ubuntu bionic/main armhf liblockfile-bin armhf 1.14-1.1 [10.9 kB] Get:175 http://ftpmaster.internal/ubuntu bionic/main armhf liblockfile1 armhf 1.14-1.1 [5784 B] Get:176 http://ftpmaster.internal/ubuntu bionic/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-3ubuntu2 [13.0 kB] Get:177 http://ftpmaster.internal/ubuntu bionic/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-3ubuntu2 [42.0 kB] Get:178 http://ftpmaster.internal/ubuntu bionic/main armhf optipng armhf 0.7.6-1.1 [80.6 kB] Get:179 http://ftpmaster.internal/ubuntu bionic/main armhf pkgbinarymangler all 138 [52.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 61.7 MB in 7s (8298 kB/s) (Reading database ... 12457 files and directories currently 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Setting up libgomp1:armhf (8-20180414-1ubuntu2) ... Setting up libatomic1:armhf (8-20180414-1ubuntu2) ... Setting up readline-common (7.0-3) ... Setting up liblockfile-bin (1.14-1.1) ... Setting up libcc1-0:armhf (8-20180414-1ubuntu2) ... Setting up make (4.1-9.1ubuntu1) ... Setting up apt-transport-https (1.6.1) ... Setting up libssl1.0.0:armhf (1.0.2n-1ubuntu5) ... Setting up libnghttp2-14:armhf (1.30.0-1ubuntu1) ... Setting up e2fslibs:armhf (1.44.1-1) ... Setting up libpng16-16:armhf (1.6.34-1) ... Setting up libreadline7:armhf (7.0-3) ... Setting up libpsl5:armhf (0.19.1-5build1) ... Setting up multiarch-support (2.27-3ubuntu1) ... Setting up tzdata (2018d-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Apr 21 12:06:08 UTC 2018. Universal Time is now: Sat Apr 21 12:06:08 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (237-3ubuntu9) ... Setting up mawk (1.3.3-17ubuntu3) ... Setting up liblockfile1:armhf (1.14-1.1) ... Setting up libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up linux-libc-dev:armhf (4.15.0-18.19) ... Setting up libmpfr6:armhf (4.0.1-1) ... Setting up advancecomp (2.1-1) ... Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libroken18-heimdal:armhf (7.5.0+dfsg-1) ... Setting up perl-modules-5.26 (5.26.1-6) ... Setting up libgdbm5:armhf (1.14.1-6) ... Setting up libkrb5support0:armhf (1.16-2build1) ... Setting up optipng (0.7.6-1.1) ... Setting up gnupg-l10n (2.2.4-1ubuntu1) ... Setting up gcc-7-base:armhf (7.3.0-16ubuntu3) ... Setting up binutils-common:armhf (2.30-15ubuntu1) ... Setting up libisl15:armhf (0.18-4) ... Setting up sensible-utils (0.0.12) ... Setting up patch (2.7.6-2ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libssl1.1:armhf (1.1.0g-2ubuntu3) ... Setting up libheimbase1-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libfakeroot:armhf (1.22-2ubuntu1) ... Setting up openssl (1.1.0g-2ubuntu3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libsqlite3-0:armhf (3.22.0-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu3) ... Setting up libmpc3:armhf (1.1.0-1) ... Setting up libc-dev-bin (2.27-3ubuntu1) ... Setting up libcomerr2:armhf (1.44.1-1) ... Setting up libgdbm-compat4:armhf (1.14.1-6) ... Setting up libkeyutils1:armhf (1.5.9-9.2ubuntu2) ... Setting up ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 8 added, 23 removed; done. Setting up libc6-dev:armhf (2.27-3ubuntu1) ... Setting up libslang2:armhf (2.3.1a-3ubuntu1) ... Setting up libassuan0:armhf (2.5.1-2) ... Setting up libisl19:armhf (0.19-1) ... Setting up libk5crypto3:armhf (1.16-2build1) ... Setting up pkgbinarymangler (138) ... Setting up libwind0-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libasan4:armhf (7.3.0-16ubuntu3) ... Setting up libbinutils:armhf (2.30-15ubuntu1) ... Setting up libcilkrts5:armhf (7.3.0-16ubuntu3) ... Setting up init (1.51) ... Setting up libasn1-8-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libubsan0:armhf (7.3.0-16ubuntu3) ... Setting up gpgconf (2.2.4-1ubuntu1) ... Setting up libhcrypto4-heimdal:armhf (7.5.0+dfsg-1) ... Setting up binutils-arm-linux-gnueabihf (2.30-15ubuntu1) ... Setting up fakeroot (1.22-2ubuntu1) ... Setting up libhx509-5-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libgcc-7-dev:armhf (7.3.0-16ubuntu3) ... Setting up cpp-7 (7.3.0-16ubuntu3) ... Setting up libstdc++-7-dev:armhf (7.3.0-16ubuntu3) ... Setting up libperl5.26:armhf (5.26.1-6) ... Setting up gpgsm (2.2.4-1ubuntu1) ... Setting up gnupg-utils (2.2.4-1ubuntu1) ... Setting up pinentry-curses (1.1.0-1) ... Setting up libkrb5-3:armhf (1.16-2build1) ... Setting up binutils (2.30-15ubuntu1) ... Setting up libkrb5-26-heimdal:armhf (7.5.0+dfsg-1) ... Setting up dirmngr (2.2.4-1ubuntu1) ... Setting up libheimntlm0-heimdal:armhf (7.5.0+dfsg-1) ... Setting up gpg (2.2.4-1ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu2) ... Setting up gcc-7 (7.3.0-16ubuntu3) ... Setting up g++-7 (7.3.0-16ubuntu3) ... Setting up gpg-agent (2.2.4-1ubuntu1) ... Installing new version of config file /etc/X11/Xsession.d/90gpg-agent ... Setting up gcc (4:7.3.0-3ubuntu2) ... Setting up gpg-wks-server (2.2.4-1ubuntu1) ... Setting up gpg-wks-client (2.2.4-1ubuntu1) ... Setting up libgssapi-krb5-2:armhf (1.16-2build1) ... Setting up perl (5.26.1-6) ... Setting up g++ (4:7.3.0-3ubuntu2) ... Setting up gnupg-agent (2.2.4-1ubuntu1) ... Setting up libgssapi3-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libcurl3-gnutls:armhf (7.58.0-2ubuntu3) ... Setting up gnupg (2.2.4-1ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu2) ... Setting up dpkg-dev (1.19.0.5ubuntu2) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Processing triggers for ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13653354 armhf bionic-proposed -c chroot:build-PACKAGEBUILD-13653354 --arch=armhf --dist=bionic-proposed --nolog 'ball_1.4.3~beta1-4.dsc' Initiating build PACKAGEBUILD-13653354 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-119-generic #143-Ubuntu SMP Mon Apr 2 16:10:02 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-004.buildd +==============================================================================+ | ball 1.4.3~beta1-4 (armhf) 21 Apr 2018 12:06 | +==============================================================================+ Package: ball Version: 1.4.3~beta1-4 Source Version: 1.4.3~beta1-4 Distribution: bionic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/ball-G7mEA3/ball-1.4.3~beta1' with '<>' I: NOTICE: Log filtering will replace 'build/ball-G7mEA3' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13653354/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ball_1.4.3~beta1-4.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-QHtKMe/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-QHtKMe/apt_archive ./ InRelease Get:2 copy:/<>/resolver-QHtKMe/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-QHtKMe/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-QHtKMe/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-QHtKMe/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (125 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgdbm3 libgssapi-krb5-2 libisl15 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmpfr4 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 libustr-1.0-1 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-QHtKMe/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12730 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), dh-python, qt4-dev-tools, libqt4-dev, libqt4-opengl-dev, python-sip-dev, flex, bison, cmake, libqtwebkit-dev, libfftw3-dev, libeigen3-dev, libgsl0-dev, python-dev, libxrender-dev, libboost-dev, libboost-iostreams-dev, libboost-thread-dev, libboost-math-dev, libboost-system-dev, libasio-dev, libboost-regex-dev, libxmu-dev, libglew-dev, libx11-dev, tidy, chrpath, libqt4-dev-bin Filtered Build-Depends: debhelper (>= 10), dh-python, qt4-dev-tools, libqt4-dev, libqt4-opengl-dev, python-sip-dev, flex, bison, cmake, libqtwebkit-dev, libfftw3-dev, libeigen3-dev, libgsl0-dev, python-dev, libxrender-dev, libboost-dev, libboost-iostreams-dev, libboost-thread-dev, libboost-math-dev, libboost-system-dev, libasio-dev, libboost-regex-dev, libxmu-dev, libglew-dev, libx11-dev, tidy, chrpath, libqt4-dev-bin dpkg-deb: building package 'sbuild-build-depends-ball-dummy' in '/<>/resolver-N_Cjpw/apt_archive/sbuild-build-depends-ball-dummy.deb'. Ign:1 copy:/<>/resolver-N_Cjpw/apt_archive ./ InRelease Get:2 copy:/<>/resolver-N_Cjpw/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-N_Cjpw/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-N_Cjpw/apt_archive ./ Sources [347 B] Get:5 copy:/<>/resolver-N_Cjpw/apt_archive ./ Packages [671 B] Fetched 3137 B in 0s (130 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ball build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgdbm3 libisl15 libmpfr4 libunistring0 libustr-1.0-1 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils chrpath cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism file flex fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian iso-codes libarchive-zip-perl libarchive13 libasio-dev libaudio2 libbison-dev libboost-atomic1.65-dev libboost-atomic1.65.1 libboost-chrono1.65-dev libboost-chrono1.65.1 libboost-date-time1.65-dev libboost-date-time1.65.1 libboost-dev libboost-iostreams-dev libboost-iostreams1.65-dev libboost-iostreams1.65.1 libboost-math-dev libboost-math1.65-dev libboost-math1.65.1 libboost-regex-dev libboost-regex1.65-dev libboost-regex1.65.1 libboost-serialization1.65-dev libboost-serialization1.65.1 libboost-system-dev libboost-system1.65-dev libboost-system1.65.1 libboost-thread-dev libboost-thread1.65-dev libboost-thread1.65.1 libboost1.65-dev libbsd0 libcap2-bin libcroco3 libcurl4 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-etnaviv1 libdrm-exynos1 libdrm-freedreno1 libdrm-nouveau2 libdrm-omap1 libdrm-radeon1 libdrm-tegra0 libdrm2 libedit2 libegl-mesa0 libegl1 libegl1-mesa libegl1-mesa-dev libeigen3-dev libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles2 libgles2-mesa-dev libglew-dev libglew2.0 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgraphite2-dev libgsl-dev libgsl23 libgslcblas0 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp1 liblcms2-2 libllvm6.0 liblzo2-2 libmagic-mgc libmagic1 libmng2 libmpdec2 libopengl0 liborc-0.4-0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-sql-sqlite libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 libqtwebkit-dev libqtwebkit4 librhash0 libsensors4 libsigsegv2 libsm-dev libsm6 libtidy5 libtiff5 libtimedate-perl libtool libuv1 libwayland-bin libwayland-client0 libwayland-cursor0 libwayland-dev libwayland-egl1-mesa libwayland-server0 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi6 libxml2 libxmu-dev libxmu-headers libxmu6 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1 libxt-dev libxt6 libxtst6 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf python python-dev python-minimal python-sip python-sip-dev python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal qdbus qt4-dev-tools qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n sip-dev tidy ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-xext-dev x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make dwz flex-doc gettext-doc libasprintf-dev libgettextpo-dev groff isoquery lrzip nas libboost-doc libboost1.65-doc libboost-container1.65-dev libboost-context1.65-dev libboost-coroutine1.65-dev libboost-exception1.65-dev libboost-fiber1.65-dev libboost-filesystem1.65-dev libboost-graph1.65-dev libboost-graph-parallel1.65-dev libboost-locale1.65-dev libboost-log1.65-dev libboost-mpi1.65-dev libboost-mpi-python1.65-dev libboost-numpy1.65-dev libboost-program-options1.65-dev libboost-python1.65-dev libboost-random1.65-dev libboost-signals1.65-dev libboost-stacktrace1.65-dev libboost-test1.65-dev libboost-timer1.65-dev libboost-type-erasure1.65-dev libboost-wave1.65-dev libboost1.65-tools-dev libmpfrc++-dev libntl-dev libeigen3-doc libmrpt-dev libfftw3-doc glew-utils libglib2.0-doc libgraphite2-utils gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libvisual-0.4-plugins gstreamer1.0-tools libice-doc icu-doc liblcms2-utils libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles libqt4-declarative-shaders qt4-qmlviewer firebird-dev libmysqlclient-dev libpq-dev libsqlite0-dev libsqlite3-dev qt4-doc unixodbc-dev libicu55 libthai0 qt4-qtconfig lm-sensors libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python-sip-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.6-venv python3.6-doc qt4-doc-html Recommended packages: libfl-dev curl | wget | lynx libssl-dev libboost-date-time-dev libpam-cap dbus libarchive-cpio-perl shared-mime-info xdg-user-dirs gstreamer1.0-plugins-base libcups2 qt-at-spi libltdl-dev libx11-doc libmail-sendmail-perl qt4-designer qt4-doc The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils chrpath cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism file flex fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian iso-codes libarchive-zip-perl libarchive13 libasio-dev libaudio2 libbison-dev libboost-atomic1.65-dev libboost-atomic1.65.1 libboost-chrono1.65-dev libboost-chrono1.65.1 libboost-date-time1.65-dev libboost-date-time1.65.1 libboost-dev libboost-iostreams-dev libboost-iostreams1.65-dev libboost-iostreams1.65.1 libboost-math-dev libboost-math1.65-dev libboost-math1.65.1 libboost-regex-dev libboost-regex1.65-dev libboost-regex1.65.1 libboost-serialization1.65-dev libboost-serialization1.65.1 libboost-system-dev libboost-system1.65-dev libboost-system1.65.1 libboost-thread-dev libboost-thread1.65-dev libboost-thread1.65.1 libboost1.65-dev libbsd0 libcap2-bin libcroco3 libcurl4 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-etnaviv1 libdrm-exynos1 libdrm-freedreno1 libdrm-nouveau2 libdrm-omap1 libdrm-radeon1 libdrm-tegra0 libdrm2 libedit2 libegl-mesa0 libegl1 libegl1-mesa libegl1-mesa-dev libeigen3-dev libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles2 libgles2-mesa-dev libglew-dev libglew2.0 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgraphite2-dev libgsl-dev libgsl23 libgslcblas0 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp1 liblcms2-2 libllvm6.0 liblzo2-2 libmagic-mgc libmagic1 libmng2 libmpdec2 libopengl0 liborc-0.4-0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-sql-sqlite libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 libqtwebkit-dev libqtwebkit4 librhash0 libsensors4 libsigsegv2 libsm-dev libsm6 libtidy5 libtiff5 libtimedate-perl libtool libuv1 libwayland-bin libwayland-client0 libwayland-cursor0 libwayland-dev libwayland-egl1-mesa libwayland-server0 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi6 libxml2 libxmu-dev libxmu-headers libxmu6 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1 libxt-dev libxt6 libxtst6 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf python python-dev python-minimal python-sip python-sip-dev python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal qdbus qt4-dev-tools qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n sbuild-build-depends-ball-dummy sip-dev tidy ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-xext-dev x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 287 newly installed, 1 to remove and 0 not upgraded. Need to get 142 MB of archives. After this operation, 658 MB of additional disk space will be used. 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bionic/main armhf cmake-data all 3.10.2-1ubuntu1 [1331 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main armhf libarchive13 armhf 3.2.2-3.1 [253 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main armhf libcurl4 armhf 7.58.0-2ubuntu3 [183 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main armhf libjsoncpp1 armhf 1.7.4-3 [65.9 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main armhf librhash0 armhf 1.3.6-2 [90.3 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main armhf libuv1 armhf 1.18.0-3 [53.5 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main armhf cmake armhf 3.10.2-1ubuntu1 [2722 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main armhf libtool all 2.4.6-2 [194 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main armhf dh-autoreconf all 17 [15.8 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main armhf libarchive-zip-perl all 1.60-1 [83.9 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main armhf libfile-stripnondeterminism-perl all 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[12.2 kB] Get:139 http://ftpmaster.internal/ubuntu bionic/main armhf libboost-system-dev armhf 1.65.1.0ubuntu1 [3060 B] Get:140 http://ftpmaster.internal/ubuntu bionic/main armhf libboost-thread1.65.1 armhf 1.65.1+dfsg-0ubuntu5 [41.5 kB] Get:141 http://ftpmaster.internal/ubuntu bionic/main armhf libboost-thread1.65-dev armhf 1.65.1+dfsg-0ubuntu5 [51.0 kB] Get:142 http://ftpmaster.internal/ubuntu bionic/main armhf libboost-thread-dev armhf 1.65.1.0ubuntu1 [2948 B] Get:143 http://ftpmaster.internal/ubuntu bionic/main armhf libdrm-amdgpu1 armhf 2.4.91-2 [17.5 kB] Get:144 http://ftpmaster.internal/ubuntu bionic/main armhf libdrm-radeon1 armhf 2.4.91-2 [19.6 kB] Get:145 http://ftpmaster.internal/ubuntu bionic/main armhf libdrm-nouveau2 armhf 2.4.91-2 [14.7 kB] Get:146 http://ftpmaster.internal/ubuntu bionic/main armhf libdrm-omap1 armhf 2.4.91-2 [6480 B] Get:147 http://ftpmaster.internal/ubuntu bionic/main armhf libdrm-freedreno1 armhf 2.4.91-2 [16.2 kB] Get:148 http://ftpmaster.internal/ubuntu bionic/main armhf libdrm-exynos1 armhf 2.4.91-2 [9436 B] Get:149 http://ftpmaster.internal/ubuntu bionic/main armhf libdrm-tegra0 armhf 2.4.91-2 [5808 B] Get:150 http://ftpmaster.internal/ubuntu bionic/main armhf libdrm-etnaviv1 armhf 2.4.91-2 [10.2 kB] Get:151 http://ftpmaster.internal/ubuntu bionic/main armhf libdrm-dev armhf 2.4.91-2 [206 kB] Get:152 http://ftpmaster.internal/ubuntu bionic/main armhf libwayland-server0 armhf 1.14.0-2 [22.8 kB] Get:153 http://ftpmaster.internal/ubuntu bionic/main armhf libgbm1 armhf 18.0.0~rc5-1ubuntu1 [21.3 kB] Get:154 http://ftpmaster.internal/ubuntu bionic/main armhf libglapi-mesa armhf 18.0.0~rc5-1ubuntu1 [28.7 kB] Get:155 http://ftpmaster.internal/ubuntu bionic/main armhf libwayland-client0 armhf 1.14.0-2 [17.8 kB] Get:156 http://ftpmaster.internal/ubuntu bionic/main armhf libx11-xcb1 armhf 2:1.6.4-3 [9578 B] Get:157 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-dri2-0 armhf 1.13-1 [6712 B] Get:158 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-dri3-0 armhf 1.13-1 [6320 B] Get:159 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-present0 armhf 1.13-1 [5472 B] Get:160 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-sync1 armhf 1.13-1 [8272 B] Get:161 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-xfixes0 armhf 1.13-1 [9036 B] Get:162 http://ftpmaster.internal/ubuntu bionic/main armhf libegl-mesa0 armhf 18.0.0~rc5-1ubuntu1 [67.5 kB] Get:163 http://ftpmaster.internal/ubuntu bionic/main armhf libglvnd0 armhf 1.0.0-2ubuntu2 [47.1 kB] Get:164 http://ftpmaster.internal/ubuntu bionic/main armhf libegl1 armhf 1.0.0-2ubuntu2 [26.5 kB] Get:165 http://ftpmaster.internal/ubuntu bionic/main armhf libegl1-mesa armhf 18.0.0~rc5-1ubuntu1 [5064 B] Get:166 http://ftpmaster.internal/ubuntu bionic/main armhf libglvnd-core-dev armhf 1.0.0-2ubuntu2 [12.7 kB] Get:167 http://ftpmaster.internal/ubuntu bionic/main armhf libgles2 armhf 1.0.0-2ubuntu2 [17.9 kB] Get:168 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-glx0 armhf 1.13-1 [20.1 kB] Get:169 http://ftpmaster.internal/ubuntu bionic/main armhf libxdamage1 armhf 1:1.1.4-3 [6488 B] Get:170 http://ftpmaster.internal/ubuntu bionic/main armhf libxfixes3 armhf 1:5.0.3-1 [9390 B] Get:171 http://ftpmaster.internal/ubuntu bionic/main armhf libllvm6.0 armhf 1:6.0-1ubuntu2 [13.5 MB] Get:172 http://ftpmaster.internal/ubuntu bionic/main armhf libsensors4 armhf 1:3.4.0-4 [25.8 kB] Get:173 http://ftpmaster.internal/ubuntu bionic/main armhf libgl1-mesa-dri armhf 18.0.0~rc5-1ubuntu1 [3718 kB] Get:174 http://ftpmaster.internal/ubuntu bionic/main armhf libglx-mesa0 armhf 18.0.0~rc5-1ubuntu1 [116 kB] Get:175 http://ftpmaster.internal/ubuntu bionic/main armhf libglx0 armhf 1.0.0-2ubuntu2 [23.3 kB] Get:176 http://ftpmaster.internal/ubuntu bionic/main armhf libgl1 armhf 1.0.0-2ubuntu2 [94.2 kB] Get:177 http://ftpmaster.internal/ubuntu bionic/main armhf libopengl0 armhf 1.0.0-2ubuntu2 [33.8 kB] Get:178 http://ftpmaster.internal/ubuntu bionic/main armhf libglvnd-dev armhf 1.0.0-2ubuntu2 [3380 B] Get:179 http://ftpmaster.internal/ubuntu bionic/main armhf libwayland-egl1-mesa armhf 18.0.0~rc5-1ubuntu1 [6952 B] Get:180 http://ftpmaster.internal/ubuntu bionic/main armhf xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:181 http://ftpmaster.internal/ubuntu bionic/main armhf x11proto-dev all 2018.4-4 [251 kB] Get:182 http://ftpmaster.internal/ubuntu bionic/main armhf x11proto-dri2-dev all 2018.4-4 [2620 B] Get:183 http://ftpmaster.internal/ubuntu bionic/main armhf x11proto-gl-dev all 2018.4-4 [2612 B] Get:184 http://ftpmaster.internal/ubuntu bionic/main armhf x11proto-core-dev all 2018.4-4 [2620 B] Get:185 http://ftpmaster.internal/ubuntu bionic/main armhf libxau-dev armhf 1:1.0.8-1 [9438 B] Get:186 http://ftpmaster.internal/ubuntu bionic/main armhf libxdmcp-dev armhf 1:1.1.2-3 [23.6 kB] Get:187 http://ftpmaster.internal/ubuntu bionic/main armhf xtrans-dev all 1.3.5-1 [70.5 kB] Get:188 http://ftpmaster.internal/ubuntu bionic/main armhf libpthread-stubs0-dev armhf 0.3-4 [4084 B] Get:189 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb1-dev armhf 1.13-1 [77.3 kB] Get:190 http://ftpmaster.internal/ubuntu bionic/main armhf libx11-dev armhf 2:1.6.4-3 [585 kB] Get:191 http://ftpmaster.internal/ubuntu bionic/main armhf x11proto-xext-dev all 2018.4-4 [2620 B] Get:192 http://ftpmaster.internal/ubuntu bionic/main armhf libxext-dev armhf 2:1.3.3-1 [77.8 kB] Get:193 http://ftpmaster.internal/ubuntu bionic/main armhf x11proto-xf86vidmode-dev all 2018.4-4 [2632 B] Get:194 http://ftpmaster.internal/ubuntu bionic/main armhf libxxf86vm-dev armhf 1:1.1.4-1 [12.7 kB] Get:195 http://ftpmaster.internal/ubuntu bionic/main armhf x11proto-fixes-dev all 1:2018.4-4 [2620 B] Get:196 http://ftpmaster.internal/ubuntu bionic/main armhf libxfixes-dev armhf 1:5.0.3-1 [9856 B] Get:197 http://ftpmaster.internal/ubuntu bionic/main armhf x11proto-damage-dev all 1:2018.4-4 [2620 B] Get:198 http://ftpmaster.internal/ubuntu bionic/main armhf libxdamage-dev armhf 1:1.1.4-3 [4692 B] Get:199 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-glx0-dev armhf 1.13-1 [26.8 kB] Get:200 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-dri2-0-dev armhf 1.13-1 [8480 B] Get:201 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-dri3-dev armhf 1.13-1 [7376 B] Get:202 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-randr0 armhf 1.13-1 [15.4 kB] Get:203 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-render0 armhf 1.13-1 [13.9 kB] Get:204 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-render0-dev armhf 1.13-1 [18.2 kB] Get:205 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-randr0-dev armhf 1.13-1 [20.3 kB] Get:206 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-shape0 armhf 1.13-1 [5684 B] Get:207 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-shape0-dev armhf 1.13-1 [7068 B] Get:208 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-xfixes0-dev armhf 1.13-1 [11.9 kB] Get:209 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-sync-dev armhf 1.13-1 [10.5 kB] Get:210 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-present-dev armhf 1.13-1 [7056 B] Get:211 http://ftpmaster.internal/ubuntu bionic/main armhf libxshmfence-dev armhf 1.2-1 [3558 B] Get:212 http://ftpmaster.internal/ubuntu bionic/main armhf libx11-xcb-dev armhf 2:1.6.4-3 [9648 B] Get:213 http://ftpmaster.internal/ubuntu bionic/main armhf libwayland-cursor0 armhf 1.14.0-2 [8860 B] Get:214 http://ftpmaster.internal/ubuntu bionic/main armhf libwayland-bin armhf 1.14.0-2 [16.7 kB] Get:215 http://ftpmaster.internal/ubuntu bionic/main armhf libwayland-dev armhf 1.14.0-2 [92.0 kB] Get:216 http://ftpmaster.internal/ubuntu bionic/main armhf libegl1-mesa-dev armhf 18.0.0~rc5-1ubuntu1 [19.8 kB] Get:217 http://ftpmaster.internal/ubuntu bionic/main armhf libexpat1-dev armhf 2.2.5-3 [106 kB] Get:218 http://ftpmaster.internal/ubuntu bionic/main armhf libfftw3-double3 armhf 3.3.7-1 [427 kB] Get:219 http://ftpmaster.internal/ubuntu bionic/main armhf libfftw3-single3 armhf 3.3.7-1 [706 kB] Get:220 http://ftpmaster.internal/ubuntu bionic/main armhf libfftw3-bin armhf 3.3.7-1 [24.9 kB] Get:221 http://ftpmaster.internal/ubuntu bionic/main armhf libfftw3-dev armhf 3.3.7-1 [1118 kB] Get:222 http://ftpmaster.internal/ubuntu bionic/main armhf libgles2-mesa-dev armhf 18.0.0~rc5-1ubuntu1 [40.6 kB] Get:223 http://ftpmaster.internal/ubuntu bionic/main armhf mesa-common-dev armhf 18.0.0~rc5-1ubuntu1 [528 kB] Get:224 http://ftpmaster.internal/ubuntu bionic/main armhf libgl1-mesa-dev armhf 18.0.0~rc5-1ubuntu1 [4444 B] Get:225 http://ftpmaster.internal/ubuntu bionic/universe armhf libglew2.0 armhf 2.0.0-5 [140 kB] Get:226 http://ftpmaster.internal/ubuntu bionic/main armhf libglu1-mesa armhf 9.0.0-2.1build1 [134 kB] Get:227 http://ftpmaster.internal/ubuntu bionic/main armhf libglu1-mesa-dev armhf 9.0.0-2.1build1 [170 kB] Get:228 http://ftpmaster.internal/ubuntu bionic/universe armhf libglew-dev armhf 2.0.0-5 [120 kB] Get:229 http://ftpmaster.internal/ubuntu bionic/universe armhf libgslcblas0 armhf 2.4+dfsg-6 [58.4 kB] Get:230 http://ftpmaster.internal/ubuntu bionic/universe armhf libgsl23 armhf 2.4+dfsg-6 [649 kB] Get:231 http://ftpmaster.internal/ubuntu bionic/universe armhf libgsl-dev armhf 2.4+dfsg-6 [850 kB] Get:232 http://ftpmaster.internal/ubuntu bionic/main armhf libgstreamer1.0-0 armhf 1.14.0-1 [786 kB] Get:233 http://ftpmaster.internal/ubuntu bionic/main armhf liborc-0.4-0 armhf 1:0.4.28-1 [117 kB] Get:234 http://ftpmaster.internal/ubuntu bionic/main armhf libgstreamer-plugins-base1.0-0 armhf 1.14.0-2ubuntu1 [614 kB] Get:235 http://ftpmaster.internal/ubuntu bionic/main armhf libice-dev armhf 2:1.0.9-2 [40.4 kB] Get:236 http://ftpmaster.internal/ubuntu bionic/main armhf libpython2.7 armhf 2.7.15~rc1-1 [901 kB] Get:237 http://ftpmaster.internal/ubuntu bionic/main armhf libpython2.7-dev armhf 2.7.15~rc1-1 [27.7 MB] Get:238 http://ftpmaster.internal/ubuntu bionic/main armhf libpython-dev armhf 2.7.15~rc1-1 [7688 B] Get:239 http://ftpmaster.internal/ubuntu bionic/universe armhf qtcore4-l10n all 4:4.8.7+dfsg-7ubuntu1 [617 kB] Get:240 http://ftpmaster.internal/ubuntu bionic/universe armhf libqtcore4 armhf 4:4.8.7+dfsg-7ubuntu1 [1355 kB] Get:241 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-xml armhf 4:4.8.7+dfsg-7ubuntu1 [81.3 kB] Get:242 http://ftpmaster.internal/ubuntu bionic/universe armhf libqtdbus4 armhf 4:4.8.7+dfsg-7ubuntu1 [154 kB] Get:243 http://ftpmaster.internal/ubuntu bionic/main armhf qtchooser armhf 64-ga1b6736-5 [22.0 kB] Get:244 http://ftpmaster.internal/ubuntu bionic/universe armhf qdbus armhf 4:4.8.7+dfsg-7ubuntu1 [26.3 kB] Get:245 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-dbus armhf 4:4.8.7+dfsg-7ubuntu1 [6436 B] Get:246 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-network armhf 4:4.8.7+dfsg-7ubuntu1 [478 kB] Get:247 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-script armhf 4:4.8.7+dfsg-7ubuntu1 [577 kB] Get:248 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-sql armhf 4:4.8.7+dfsg-7ubuntu1 [84.6 kB] Get:249 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-xmlpatterns armhf 4:4.8.7+dfsg-7ubuntu1 [873 kB] Get:250 http://ftpmaster.internal/ubuntu bionic/main armhf libjbig0 armhf 2.1-3.1build1 [23.9 kB] Get:251 http://ftpmaster.internal/ubuntu bionic/main armhf libtiff5 armhf 4.0.9-5 [135 kB] Get:252 http://ftpmaster.internal/ubuntu bionic/main armhf libxi6 armhf 2:1.7.9-1 [26.1 kB] Get:253 http://ftpmaster.internal/ubuntu bionic/main armhf libxrender1 armhf 1:0.9.10-1 [15.6 kB] Get:254 http://ftpmaster.internal/ubuntu bionic/universe armhf libqtgui4 armhf 4:4.8.7+dfsg-7ubuntu1 [3528 kB] Get:255 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-declarative armhf 4:4.8.7+dfsg-7ubuntu1 [897 kB] Get:256 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-designer armhf 4:4.8.7+dfsg-7ubuntu1 [3368 kB] Get:257 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-qt3support armhf 4:4.8.7+dfsg-7ubuntu1 [881 kB] Get:258 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-dev-bin armhf 4:4.8.7+dfsg-7ubuntu1 [1423 kB] Get:259 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-help armhf 4:4.8.7+dfsg-7ubuntu1 [181 kB] Get:260 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-scripttools armhf 4:4.8.7+dfsg-7ubuntu1 [190 kB] Get:261 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-svg armhf 4:4.8.7+dfsg-7ubuntu1 [114 kB] Get:262 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-test armhf 4:4.8.7+dfsg-7ubuntu1 [51.8 kB] Get:263 http://ftpmaster.internal/ubuntu bionic/universe armhf qt4-linguist-tools armhf 4:4.8.7+dfsg-7ubuntu1 [727 kB] Get:264 http://ftpmaster.internal/ubuntu bionic/universe armhf qt4-qmake armhf 4:4.8.7+dfsg-7ubuntu1 [1123 kB] Get:265 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-dev armhf 4:4.8.7+dfsg-7ubuntu1 [842 kB] Get:266 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-opengl armhf 4:4.8.7+dfsg-7ubuntu1 [176 kB] Get:267 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-opengl-dev armhf 4:4.8.7+dfsg-7ubuntu1 [22.8 kB] Get:268 http://ftpmaster.internal/ubuntu bionic/universe armhf libqt4-sql-sqlite armhf 4:4.8.7+dfsg-7ubuntu1 [20.8 kB] Get:269 http://ftpmaster.internal/ubuntu bionic/main armhf libxslt1.1 armhf 1.1.29-5 [131 kB] Get:270 http://ftpmaster.internal/ubuntu bionic/universe armhf libqtwebkit4 armhf 2.3.2-0ubuntu13 [7233 kB] Get:271 http://ftpmaster.internal/ubuntu bionic/universe armhf libqtwebkit-dev armhf 2.3.2-0ubuntu13 [70.1 kB] Get:272 http://ftpmaster.internal/ubuntu bionic/main armhf libsm-dev armhf 2:1.2.2-1 [14.8 kB] Get:273 http://ftpmaster.internal/ubuntu bionic/main armhf libtidy5 armhf 1:5.2.0-2 [133 kB] Get:274 http://ftpmaster.internal/ubuntu bionic/main armhf libxt-dev armhf 1:1.1.5-1 [366 kB] Get:275 http://ftpmaster.internal/ubuntu bionic/main armhf libxmu6 armhf 2:1.1.2-2 [38.3 kB] Get:276 http://ftpmaster.internal/ubuntu bionic/main armhf libxmu-headers all 2:1.1.2-2 [54.3 kB] Get:277 http://ftpmaster.internal/ubuntu bionic/main armhf libxmu-dev armhf 2:1.1.2-2 [41.6 kB] Get:278 http://ftpmaster.internal/ubuntu bionic/main armhf libxrender-dev armhf 1:0.9.10-1 [21.7 kB] Get:279 http://ftpmaster.internal/ubuntu bionic/main armhf libxtst6 armhf 2:1.2.3-1 [11.4 kB] Get:280 http://ftpmaster.internal/ubuntu bionic/main armhf python2.7-dev armhf 2.7.15~rc1-1 [287 kB] Get:281 http://ftpmaster.internal/ubuntu bionic/main armhf python-dev armhf 2.7.15~rc1-1 [1256 B] Get:282 http://ftpmaster.internal/ubuntu bionic/universe armhf python-sip armhf 4.19.7+dfsg-1 [64.2 kB] Get:283 http://ftpmaster.internal/ubuntu bionic/universe armhf sip-dev armhf 4.19.7+dfsg-1 [137 kB] Get:284 http://ftpmaster.internal/ubuntu bionic/universe armhf python-sip-dev armhf 4.19.7+dfsg-1 [21.9 kB] Get:285 http://ftpmaster.internal/ubuntu bionic/universe armhf qt4-dev-tools armhf 4:4.8.7+dfsg-7ubuntu1 [3678 kB] Get:286 http://ftpmaster.internal/ubuntu bionic/universe armhf tidy armhf 1:5.2.0-2 [24.5 kB] Get:287 http://ftpmaster.internal/ubuntu bionic/universe armhf libeigen3-dev all 3.3.4-4 [810 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 142 MB in 6s (22.7 MB/s) (Reading database ... 12730 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package libpython3.6-minimal:armhf. (Reading database ... 12721 files and directories currently installed.) Preparing to unpack .../0-libpython3.6-minimal_3.6.5-3_armhf.deb ... Unpacking libpython3.6-minimal:armhf (3.6.5-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../1-libexpat1_2.2.5-3_armhf.deb ... Unpacking libexpat1:armhf (2.2.5-3) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../2-python3.6-minimal_3.6.5-3_armhf.deb ... Unpacking python3.6-minimal (3.6.5-3) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../3-python3-minimal_3.6.5-3_armhf.deb ... Unpacking python3-minimal (3.6.5-3) ... Selecting previously unselected package mime-support. Preparing to unpack .../4-mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libmpdec2:armhf. 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Selecting previously unselected package libxau6:armhf. Preparing to unpack .../01-libxau6_1%3a1.0.8-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.8-1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../02-libbsd0_0.8.7-1_armhf.deb ... Unpacking libbsd0:armhf (0.8.7-1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../03-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../04-libxcb1_1.13-1_armhf.deb ... Unpacking libxcb1:armhf (1.13-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../05-libx11-data_2%3a1.6.4-3_all.deb ... Unpacking libx11-data (2:1.6.4-3) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../06-libx11-6_2%3a1.6.4-3_armhf.deb ... Unpacking libx11-6:armhf (2:1.6.4-3) ... Selecting previously unselected package libxext6:armhf. 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Setting up bsdmainutils (11.1.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libgslcblas0:armhf (2.4+dfsg-6) ... Setting up libqt4-test:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up libglib2.0-bin (2.56.1-2ubuntu1) ... Setting up libboost1.65-dev:armhf (1.65.1+dfsg-0ubuntu5) ... Setting up libglvnd-core-dev:armhf (1.0.0-2ubuntu2) ... Setting up libgraphite2-dev:armhf (1.3.11-2) ... Setting up libwayland-cursor0:armhf (1.14.0-2) ... Setting up sip-dev (4.19.7+dfsg-1) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libpython2.7-stdlib:armhf (2.7.15~rc1-1) ... 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Setting up libboost-atomic1.65-dev:armhf (1.65.1+dfsg-0ubuntu5) ... Setting up fontconfig-config (2.12.6-0ubuntu2) ... Setting up python3.6 (3.6.5-3) ... Setting up libgstreamer1.0-0:armhf (1.14.0-1) ... Setcap worked! gst-ptp-helper is not suid! Setting up x11proto-core-dev (2018.4-4) ... Setting up libxshmfence-dev:armhf (1.2-1) ... Setting up libgsl23:armhf (2.4+dfsg-6) ... Setting up gettext (0.19.8.1-6) ... Setting up flex (2.6.4-6) ... Setting up libgsl-dev (2.4+dfsg-6) ... Setting up libarchive13:armhf (3.2.2-3.1) ... Setting up libeigen3-dev (3.3.4-4) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up qt4-qmake (4:4.8.7+dfsg-7ubuntu1) ... Setting up python2.7 (2.7.15~rc1-1) ... Setting up libharfbuzz0b:armhf (1.7.2-1ubuntu1) ... Setting up libtiff5:armhf (4.0.9-5) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up libxau-dev:armhf (1:1.0.8-1) ... Setting up libboost-serialization1.65-dev:armhf (1.65.1+dfsg-0ubuntu5) ... Setting up autoconf (2.69-11) ... Setting up libqt4-sql:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up libboost-chrono1.65-dev:armhf (1.65.1+dfsg-0ubuntu5) ... Setting up file (1:5.32-2) ... Setting up libmng2:armhf (2.0.2-0ubuntu3) ... Setting up libdrm2:armhf (2.4.91-2) ... Setting up libpython-stdlib:armhf (2.7.15~rc1-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up gir1.2-harfbuzz-0.0:armhf (1.7.2-1ubuntu1) ... Setting up libdrm-etnaviv1:armhf (2.4.91-2) ... Setting up libpython2.7:armhf (2.7.15~rc1-1) ... Setting up libfftw3-dev:armhf (3.3.7-1) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:armhf (2:1.0.9-2) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2.7-dev:armhf (2.7.15~rc1-1) ... Setting up libboost-system1.65-dev:armhf (1.65.1+dfsg-0ubuntu5) ... Setting up libdrm-radeon1:armhf (2.4.91-2) ... Setting up libboost-dev:armhf (1.65.1.0ubuntu1) ... Setting up libdrm-nouveau2:armhf (2.4.91-2) ... Setting up libwayland-dev:armhf (1.14.0-2) ... Setting up libboost-math1.65-dev:armhf (1.65.1+dfsg-0ubuntu5) ... Setting up cmake (3.10.2-1ubuntu1) ... Setting up libboost-math-dev:armhf (1.65.1.0ubuntu1) ... Setting up python2.7-dev (2.7.15~rc1-1) ... Setting up libqtdbus4:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up libxcb1:armhf (1.13-1) ... Setting up libharfbuzz-gobject0:armhf (1.7.2-1ubuntu1) ... Setting up python (2.7.15~rc1-1) ... Setting up python-sip (4.19.7+dfsg-1) ... Setting up libtool (2.4.6-2) ... Setting up libpython3-stdlib:armhf (3.6.5-3) ... Setting up libxcb-present0:armhf (1.13-1) ... Setting up libgstreamer-plugins-base1.0-0:armhf (1.14.0-2ubuntu1) ... Setting up libpython-dev:armhf (2.7.15~rc1-1) ... Setting up libfontconfig1:armhf (2.12.6-0ubuntu2) ... Setting up libxcb-dri2-0:armhf (1.13-1) ... Setting up libsm6:armhf (2:1.2.2-1) ... Setting up libxcb-dri3-0:armhf (1.13-1) ... Setting up libxcb-glx0:armhf (1.13-1) ... Setting up libxcb-randr0:armhf (1.13-1) ... Setting up libxcb-xfixes0:armhf (1.13-1) ... Setting up libxcb-render0:armhf (1.13-1) ... Setting up libharfbuzz-icu0:armhf (1.7.2-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.6.5-3) ... Setting up libdrm-amdgpu1:armhf (2.4.91-2) ... Setting up libdrm-exynos1:armhf (2.4.91-2) ... Setting up libdrm-freedreno1:armhf (2.4.91-2) ... Setting up libqt4-script:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up libboost-date-time1.65-dev:armhf (1.65.1+dfsg-0ubuntu5) ... Setting up python-dev (2.7.15~rc1-1) ... Setting up libboost-system-dev:armhf (1.65.1.0ubuntu1) ... Setting up libdrm-omap1:armhf (2.4.91-2) ... Setting up libicu-le-hb0:armhf (1.0.3+git161113-4) ... Setting up libgbm1:armhf (18.0.0~rc5-1ubuntu1) ... Setting up libx11-6:armhf (2:1.6.4-3) ... Setting up libgl1-mesa-dri:armhf (18.0.0~rc5-1ubuntu1) ... Setting up libqt4-sql-sqlite:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up libdrm-tegra0:armhf (2.4.91-2) ... Setting up qdbus (4:4.8.7+dfsg-7ubuntu1) ... Setting up libxcb-sync1:armhf (1.13-1) ... Setting up python-sip-dev (4.19.7+dfsg-1) ... Setting up libboost-thread1.65-dev:armhf (1.65.1+dfsg-0ubuntu5) ... Setting up libice-dev:armhf (2:1.0.9-2) ... Setting up libiculx60:armhf (60.2-3ubuntu3) ... Setting up libxt6:armhf (1:1.1.5-1) ... Setting up libxcb-shape0:armhf (1.13-1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libxcb1-dev:armhf (1.13-1) ... Setting up libxcb-glx0-dev:armhf (1.13-1) ... Setting up libegl-mesa0:armhf (18.0.0~rc5-1ubuntu1) ... Setting up libx11-dev:armhf (2:1.6.4-3) ... Setting up libqt4-dbus:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up python3-lib2to3 (3.6.5-3) ... Setting up libqt4-network:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up python3-distutils (3.6.5-3) ... Setting up libxcb-sync-dev:armhf (1.13-1) ... Setting up libaudio2:armhf (1.9.4-6) ... Setting up fontconfig (2.12.6-0ubuntu2) ... Regenerating fonts cache... done. Setting up libx11-xcb-dev:armhf (2:1.6.4-3) ... Setting up libsm-dev:armhf (2:1.2.2-1) ... Setting up libxdamage1:armhf (1:1.1.4-3) ... Setting up libboost-thread-dev:armhf (1.65.1.0ubuntu1) ... Setting up libxext6:armhf (2:1.3.3-1) ... Setting up libxfixes3:armhf (1:5.0.3-1) ... Setting up libglib2.0-dev-bin (2.56.1-2ubuntu1) ... Setting up libdrm-dev:armhf (2.4.91-2) ... Setting up libxmu-headers (2:1.1.2-2) ... Setting up libxrender-dev:armhf (1:0.9.10-1) ... Setting up libqt4-xmlpatterns:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up libglib2.0-dev:armhf (2.56.1-2ubuntu1) ... Setting up libxtst6:armhf (2:1.2.3-1) ... Setting up libxmu6:armhf (2:1.1.2-2) ... Setting up libxcb-dri2-0-dev:armhf (1.13-1) ... Setting up libxcb-render0-dev:armhf (1.13-1) ... Setting up libegl1:armhf (1.0.0-2ubuntu2) ... Setting up libxcb-dri3-dev:armhf (1.13-1) ... Setting up libxext-dev:armhf (2:1.3.3-1) ... Setting up libwayland-egl1-mesa:armhf (18.0.0~rc5-1ubuntu1) ... Setting up libxcb-shape0-dev:armhf (1.13-1) ... Setting up libxxf86vm1:armhf (1:1.1.4-1) ... Setting up libxxf86vm-dev:armhf (1:1.1.4-1) ... Setting up libxfixes-dev:armhf (1:5.0.3-1) ... Setting up dh-python (3.20180325ubuntu2) ... Setting up libglx-mesa0:armhf (18.0.0~rc5-1ubuntu1) ... Setting up libegl1-mesa:armhf (18.0.0~rc5-1ubuntu1) ... Setting up libxi6:armhf (2:1.7.9-1) ... Setting up libxcb-randr0-dev:armhf (1.13-1) ... Setting up libxt-dev:armhf (1:1.1.5-1) ... Setting up mesa-common-dev:armhf (18.0.0~rc5-1ubuntu1) ... Setting up libxmu-dev:armhf (2:1.1.2-2) ... Setting up libxcb-xfixes0-dev:armhf (1.13-1) ... Setting up libxdamage-dev:armhf (1:1.1.4-3) ... Setting up libxcb-present-dev:armhf (1.13-1) ... Setting up libglx0:armhf (1.0.0-2ubuntu2) ... Setting up libgl1:armhf (1.0.0-2ubuntu2) ... Setting up libglew2.0:armhf (2.0.0-5) ... Setting up libglu1-mesa:armhf (9.0.0-2.1build1) ... Setting up libglvnd-dev:armhf (1.0.0-2ubuntu2) ... Setting up libgl1-mesa-dev:armhf (18.0.0~rc5-1ubuntu1) ... Setting up libegl1-mesa-dev:armhf (18.0.0~rc5-1ubuntu1) ... Setting up libglu1-mesa-dev:armhf (9.0.0-2.1build1) ... Setting up libgles2-mesa-dev:armhf (18.0.0~rc5-1ubuntu1) ... Setting up libglew-dev:armhf (2.0.0-5) ... Setting up libqtgui4:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up dh-autoreconf (17) ... Setting up libqt4-designer:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-help:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up libicu-dev (60.2-3ubuntu3) ... Setting up dh-strip-nondeterminism (0.040-1.1~build1) ... Setting up libboost-regex1.65-dev:armhf (1.65.1+dfsg-0ubuntu5) ... Setting up libharfbuzz-dev:armhf (1.7.2-1ubuntu1) ... Setting up libqt4-svg:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-scripttools:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqtwebkit4:armhf (2.3.2-0ubuntu13) ... Setting up debhelper (11.1.6ubuntu1) ... Setting up libqt4-opengl:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-declarative:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up libicu-le-hb-dev:armhf (1.0.3+git161113-4) ... Setting up libqt4-qt3support:armhf (4:4.8.7+dfsg-7ubuntu1) ... Setting up libboost-iostreams1.65-dev:armhf (1.65.1+dfsg-0ubuntu5) ... Setting up libqt4-dev-bin (4:4.8.7+dfsg-7ubuntu1) ... Setting up libboost-iostreams-dev:armhf (1.65.1.0ubuntu1) ... Setting up libboost-regex-dev:armhf (1.65.1.0ubuntu1) ... Setting up qt4-dev-tools (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-dev (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-opengl-dev (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqtwebkit-dev (2.3.2-0ubuntu13) ... Setting up sbuild-build-depends-ball-dummy (0.invalid.0) ... (Reading database ... 42871 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Processing triggers for systemd (237-3ubuntu9) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-119-generic arm64 (armv7l) Toolchain package versions: binutils_2.30-15ubuntu1 dpkg-dev_1.19.0.5ubuntu2 g++-7_7.3.0-16ubuntu3 gcc-7_7.3.0-16ubuntu3 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-16ubuntu3 libstdc++6_8-20180414-1ubuntu2 linux-libc-dev_4.15.0-18.19 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.1 apt-transport-https_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1ubuntu1 base-passwd_3.5.44 bash_4.4.18-2ubuntu1 binutils_2.30-15ubuntu1 binutils-arm-linux-gnueabihf_2.30-15ubuntu1 binutils-common_2.30-15ubuntu1 bison_2:3.0.4.dfsg-1build1 bsdmainutils_11.1.2ubuntu1 bsdutils_1:2.31.1-0.4ubuntu3 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 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readline-common_7.0-3 sbuild-build-depends-ball-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sip-dev_4.19.7+dfsg-1 systemd_237-3ubuntu9 systemd-sysv_237-3ubuntu9 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tidy_1:5.2.0-2 tzdata_2018d-1 ubuntu-keyring_2018.02.28 ucf_3.0038 util-linux_2.31.1-0.4ubuntu3 x11-common_1:7.7+19ubuntu7 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-dri2-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-gl-dev_2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Sep 21 14:11:15 2017 UTC gpgv: using RSA key 578A0494D1C646D1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ball_1.4.3~beta1-4.dsc dpkg-source: info: extracting ball in ball-1.4.3~beta1 dpkg-source: info: unpacking ball_1.4.3~beta1.orig.tar.gz dpkg-source: info: unpacking ball_1.4.3~beta1-4.debian.tar.xz dpkg-source: info: applying 0001-missingSigned.patch dpkg-source: info: applying fix-compilation-of-BinaryFingerprintMethods_test.patch dpkg-source: info: applying fix-string-gcc5.patch dpkg-source: info: applying fix-poseClustering-with-boost-1.60.patch dpkg-source: info: applying nopsboxit.patch dpkg-source: info: applying link_against_x11.patch dpkg-source: info: applying findsip.patch dpkg-source: info: applying disable-assign-positions-from-template.patch dpkg-source: info: applying fix-FingerprintSimilarityClustering.patch dpkg-source: info: applying fix-Python-bindings-for-Box.patch dpkg-source: info: applying remove_Socket_test.patch dpkg-source: info: applying modify-rtti-isKindOf-to-take-pointer.patch dpkg-source: info: applying fix-PoseClustering_Test-replace-file-compare-with-deserialize.patch dpkg-source: info: applying fix-XDRPersistenceManager_test.patch dpkg-source: info: applying disable-AmberFF_test.patch dpkg-source: info: applying gcc7_458598c...a0eb440.diff dpkg-source: info: applying desperately_remove_failing_tests.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13653354 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13653354 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13653354 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ball dpkg-buildpackage: info: source version 1.4.3~beta1-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build ball-1.4.3~beta1 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean debian/rules:47: Building for armhf which is not amd64. We will run the test suite, but ignore any errors to prevent FTBFS. See Debian bug #830894 for the discussion and how you can help. dh clean --buildsystem=cmake --builddirectory=build --with python2 debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' debian/rules:47: Building for armhf which is not amd64. We will run the test suite, but ignore any errors to prevent FTBFS. See Debian bug #830894 for the discussion and how you can help. [ -d source ] && cd source ; \ if [ -f Makefile ] ; \ then \ make clean ; \ cd PYTHON/EXTENSIONS; \ make clean; \ rm -rf ../lib/Linux*; \ rm -rf ../doc/doxygen/latex/*; \ rm -f /<>/source/config.status 2>/dev/null; \ fi rm -f data/BALLView/translations/BALLView.de_DE.qm rm -f data/BALLView/translations/BALLView.zh_TW.qm rm -f doc/TUTORIAL/*.aux rm -rf build find . -name "*.o" | xargs -r rm find . -type l | xargs -r rm find doc/TUTORIAL/ -name "tutorial.*" | egrep -v ".(tex|bib)$" |xargs -r rm rm -f include/BALL/BALL.doc # find . -name "*.doc" -delete # Remove self-create UI header file rm -f include/BALL/VIEW/UIC/ui_assignBondOrderConfigurationDialog.h \ include/BALL/VIEW/UIC/ui_assignBondOrderResultsDialog.h \ include/BALL/VIEW/UIC/ui_atomOverview.h make[1]: Leaving directory '/<>' dh_clean -O--buildsystem=cmake -O--builddirectory=build rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libball1.4-data.substvars debian/libball1.4.substvars debian/libball1.4-dev.substvars debian/libballview1.4.substvars debian/libballview1.4-dev.substvars debian/python-ball.substvars debian/python-ballview.substvars debian/ballview.substvars debian/libball1.4-doc.substvars debian/files rm -fr -- debian/libball1.4-data/ debian/tmp/ debian/libball1.4/ debian/libball1.4-dev/ debian/libballview1.4/ debian/libballview1.4-dev/ debian/python-ball/ debian/python-ballview/ debian/ballview/ debian/libball1.4-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch debian/rules:47: Building for armhf which is not amd64. We will run the test suite, but ignore any errors to prevent FTBFS. See Debian bug #830894 for the discussion and how you can help. dh build-arch --buildsystem=cmake --builddirectory=build --with python2 dh_update_autotools_config -a -O--buildsystem=cmake -O--builddirectory=build dh_autoreconf -a -O--buildsystem=cmake -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' debian/rules:47: Building for armhf which is not amd64. We will run the test suite, but ignore any errors to prevent FTBFS. See Debian bug #830894 for the discussion and how you can help. mkdir -p build cd build && LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" \ cmake .. -DCMAKE_SOURCE_DIR=/<> -DCMAKE_INSTALL_PREFIX=./usr -DBALL_PATH=/usr -DBALL_DATA_PATH=/usr/share/BALL-1.4/data -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- g++ requires -std=c++0x for tr1 -- Compiler checks for conversion: OFF -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Check size of char -- Check size of char - done -- Check size of short -- Check size of short - done -- Check size of int -- Check size of int - done -- Check size of long -- Check size of long - done -- Check size of size_t -- Check size of size_t - done -- Check size of void* -- Check size of void* - done -- Check size of unsigned short -- Check size of unsigned short - done -- Check size of unsigned int -- Check size of unsigned int - done -- Check size of unsigned long -- Check size of unsigned long - done -- Check size of unsigned long long -- Check size of unsigned long long - done -- Check size of float -- Check size of float - done -- Check size of double -- Check size of double - done -- Check size of uint64_t -- Check size of uint64_t - done -- Check size of uint32_t -- Check size of uint32_t - done -- Check size of uint16_t -- Check size of uint16_t - done -- Looking for C++ include unistd.h -- Looking for C++ include unistd.h - found -- Looking for C++ include process.h -- Looking for C++ include process.h - not found -- Looking for C++ include time.h -- Looking for C++ include time.h - found -- Looking for C++ include limits.h -- Looking for C++ include limits.h - found -- Looking for C++ include dirent.h -- Looking for C++ include dirent.h - found -- Looking for C++ include direct.h -- Looking for C++ include direct.h - not found -- Looking for C++ include pwd.h -- Looking for C++ include pwd.h - found -- Looking for C++ include stdint.h -- Looking for C++ include stdint.h - found -- Looking for C++ include sys/ioctl.h -- Looking for C++ include sys/ioctl.h - found -- Looking for C++ include sys/time.h -- Looking for C++ include sys/time.h - found -- Looking for C++ include sys/stat.h -- Looking for C++ include sys/stat.h - found -- Looking for C++ include sys/times.h -- Looking for C++ include sys/times.h - found -- Looking for C++ include sys/types.h -- Looking for C++ include sys/types.h - found -- Looking for C++ include sys/param.h -- Looking for C++ include sys/param.h - found -- Looking for C++ include sys/socket.h -- Looking for C++ include sys/socket.h - found -- Looking for C++ include sys/sysinfo.h -- Looking for C++ include sys/sysinfo.h - found -- Do we need float.h for limits.h? -- Looking for FLT_MIN -- Looking for FLT_MIN - not found -- Looking for FLT_MIN -- Looking for FLT_MIN - found -- Performing Test BALL_HAS_NUMERIC_LIMITS -- Performing Test BALL_HAS_NUMERIC_LIMITS - Success -- Looking for C++ include regex.h -- Looking for C++ include regex.h - found -- Looking for C++ include netinet/in.h -- Looking for C++ include netinet/in.h - found -- Looking for C++ include netdb.h -- Looking for C++ include netdb.h - found -- Performing Test BALL_HAS_MODE_T -- Performing Test BALL_HAS_MODE_T - Success -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for C++ include ieeefp.h -- Looking for C++ include ieeefp.h - not found -- Looking for C++ include values.h -- Looking for C++ include values.h - found -- Looking for kill -- Looking for kill - found -- Looking for sysconf -- Looking for sysconf - found -- Performing Test BALL_ALLOW_LONG64_TYPE_OVERLOADS -- Performing Test BALL_ALLOW_LONG64_TYPE_OVERLOADS - Success -- Performing Test BALL_HAS_ANSI_IOSTREAM -- Performing Test BALL_HAS_ANSI_IOSTREAM - Success -- Performing Test BALL_HAS_INLINE_TPL_ARGS -- Performing Test BALL_HAS_INLINE_TPL_ARGS - Success -- Checking for gnu slist -- Performing Test BALL_HAS_GNU_SLIST -- Performing Test BALL_HAS_GNU_SLIST - Success -- Checking for gnu slist - Found -- Checking for C++11 initializer lists -- Performing Test BALL_HAS_INITIALIZER_LISTS -- Performing Test BALL_HAS_INITIALIZER_LISTS - Success -- Checking for C++11 initializer lists - Found -- Performing Test BALL_HAS_EXTERN_TEMPLATES -- Performing Test BALL_HAS_EXTERN_TEMPLATES - Success -- Performing Test BALL_HAS_RVALUE_REFERENCES -- Performing Test BALL_HAS_RVALUE_REFERENCES - Success -- Performing Test BALL_STD_STRING_HAS_RVALUE_REFERENCES -- Performing Test BALL_STD_STRING_HAS_RVALUE_REFERENCES - Success -- Performing Test BALL_HAS_NOEXCEPT -- Performing Test BALL_HAS_NOEXCEPT - Success -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATORS -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATORS - Success -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_FUNCTIONS -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_FUNCTIONS - Success -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_INITLIST_INSERT -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_INITLIST_INSERT - Failed -- Performing Test BALL_HAS_STD_STRING_SHRINK_TO_FIT -- Performing Test BALL_HAS_STD_STRING_SHRINK_TO_FIT - Success -- Performing Test BALL_HAS_STD_STRING_FRONT_BACK -- Performing Test BALL_HAS_STD_STRING_FRONT_BACK - Success -- Performing Test BALL_HAS_STD_STRING_POP_BACK -- Performing Test BALL_HAS_STD_STRING_POP_BACK - Success -- Looking for vsnprintf -- Looking for vsnprintf - found -- [GCC only] STL debug mode: OFF -- Found BISON: /usr/bin/bison -- Found FLEX: /usr/bin/flex -- Checking for yylex_destroy support in flex -- Checking for yylex_destroy support in flex - Not found -- Looking for C++ include rpc/types.h -- Looking for C++ include rpc/types.h - found -- Performing Test XDR_HAS_RPC_XDR_H -- Performing Test XDR_HAS_RPC_XDR_H - Success -- Looking for xdr_int -- Looking for xdr_int - found -- Looking for xdr_u_hyper -- Looking for xdr_u_hyper - found -- Looking for 64-bit XDR type (for xdr_u_hyper) -- Performing Test XDR_64Bit_Type -- Performing Test XDR_64Bit_Type - Success -- Checking for xdrrec_create signature -- Performing Test BALL_XDRREC_CREATE_CHAR_CHAR_INT -- Performing Test BALL_XDRREC_CREATE_CHAR_CHAR_INT - Success -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.65.1 -- Found the following Boost libraries: -- system -- thread -- iostreams -- regex -- date_time -- serialization -- chrono -- atomic -- /usr/include -- Performing Test BALL_HAS_BOOST_UNORDERED_MAP -- Performing Test BALL_HAS_BOOST_UNORDERED_MAP - Success -- Using GSL from /usr -- Checking for libfftw. -- FFTW: Found double precision -- FFTW: Found float precision -- Could NOT find LPSolve (missing: LPSOLVE_LIBRARIES LPSOLVE_INCLUDE_PATH LPSOLVE_LINKS) -- Looking for math.h -- Looking for math.h - found -- Could NOT find LibSVM (missing: LIBSVM_LIBRARY LIBSVM_INCLUDE_DIR LIBSVM_INCLUDE_DIRS LIBSVM_ROOT_DIR) -- [Warning] FindTBB.cmake: The use of TBB_ARCHITECTURE and TBB_COMPILER is deprecated and may not be supported in future versions. Please set (using tbbvars.[bat|csh|sh]). ERROR: Intel TBB NOT found! -- Looked for Threading Building Blocks in /opt/intel/tbb;/usr/local/include;/usr/include;/usr -- Intel Threading Building Blocks not found! -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake (found version "4.8.7") Qt PHONON library not found. -- QT qmake at /usr/bin/qmake -- QT moc at /usr/lib/arm-linux-gnueabihf/qt4/bin/moc -- QT uic at /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found OpenGL: /usr/lib/arm-linux-gnueabihf/libOpenGL.so -- Could not find RTfact header file (RTpie/IRayTracer.hpp)! Real time ray tracing will be disabled! -- Found PythonInterp: /usr/bin/python2.7 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython2.7.so -- Found SIP version: 4.19.7 -- Found SIP: /usr/bin/sip (Required is at least version "4.8") -- spnav_include-NOTFOUND -- Could not find SpaceNavigator libraries. Disabling the SpaceNavigator plugin -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Checking for module 'loudmouth-1.0' -- No package 'loudmouth-1.0' found -- libloudmouth not found. Disabling the XML3D plugin. -- Could not find VRPN libraries. Disabling the VRPN plugin -- Could not find VRPN libraries. Disabling the VRPNHD plugin -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Doxygen not found. Disabling all documentation targets! -- Doxygen or Latex missing. Disabling 'tutorial' target! -- -- ----------------------------------------------------------------- -- -- You have successfully configured BALL. -- -- For a full list of make targets execute: -- 'make targets' -- -- ----------------------------------------------------------------- -- -- Cannot register BALL with CMake! For external code, set the path to BALL during find_package() manually. -- Configuring done -- Generating done -- Build files have been written to: /<>/build make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' debian/rules:47: Building for armhf which is not amd64. We will run the test suite, but ignore any errors to prevent FTBFS. See Debian bug #830894 for the discussion and how you can help. ## Fix upstream issue of missing UI files uic-qt4 source/VIEW/DIALOGS/assignBondOrderConfigurationDialog.ui > include/BALL/VIEW/UIC/ui_assignBondOrderConfigurationDialog.h uic-qt4 source/VIEW/DIALOGS/assignBondOrderResultsDialog.ui > include/BALL/VIEW/UIC/ui_assignBondOrderResultsDialog.h uic-qt4 source/VIEW/DIALOGS/atomOverview.ui > include/BALL/VIEW/UIC/ui_atomOverview.h ## ... ## Uhmmm, seems we need to do this for all UI files mentioned in ## source/VIEW/DIALOGS/sources.cmake ## but I really hope some cmake expert might be able to find a clue ## how to trigger cmake to do it as intended by upstream. ## Somehow the code ## ADD_BALL_UIFILES("VIEW/DIALOGS" "") ## needs to be called before the build code below can be started make -C build BALL VIEW BALLView build_tests install make[2]: Entering directory '/<>/build' make[3]: Entering directory '/<>/build' make[4]: Entering directory '/<>/build' make[5]: Entering directory '/<>/build' [ 0%] Generating source/SYSTEM/moc_simpleDownloader.C [ 0%] [BISON][CIFParserParser] Building parser with bison 3.0.4 source/FORMAT/CIFParserParser.y: warning: 5 shift/reduce conflicts [-Wconflicts-sr] [ 0%] [FLEX][CIFParserLexer] Building scanner with flex 2.6.4 [ 0%] [BISON][GAMESSDatParserParser] Building parser with bison 3.0.4 source/FORMAT/GAMESSDatParserParser.y: warning: 3 shift/reduce conflicts [-Wconflicts-sr] [ 0%] [FLEX][GAMESSDatParserLexer] Building scanner with flex 2.6.4 [ 0%] [BISON][expressionParserParser] Building parser with bison 3.0.4 [ 0%] [FLEX][expressionParserLexer] Building scanner with flex 2.6.4 [ 0%] [BISON][parsedFunctionParser] Building parser with bison 3.0.4 [ 0%] [FLEX][parsedFunctionLexer] Building scanner with flex 2.6.4 [ 0%] [BISON][GAFFCESParserParser] Building parser with bison 3.0.4 [ 0%] [FLEX][GAFFCESParserLexer] Building scanner with flex 2.6.4 [ 0%] [BISON][smilesParserParser] Building parser with bison 3.0.4 [ 0%] [FLEX][smilesParserLexer] Building scanner with flex 2.6.4 [ 0%] [BISON][smartsParserParser] Building parser with bison 3.0.4 source/STRUCTURE/smartsParserParser.y: warning: 26 shift/reduce conflicts [-Wconflicts-sr] [ 0%] [FLEX][smartsParserLexer] Building scanner with flex 2.6.4 Scanning dependencies of target BALL make[5]: Leaving directory '/<>/build' make[5]: Entering directory '/<>/build' [ 0%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/autoDeletable.o [ 0%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/composite.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/source/CONCEPT/composite.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/embeddable.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/embeddable.h:9, from /<>/source/CONCEPT/embeddable.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/enumerator.o In file included from /<>/source/CONCEPT/enumerator.C:8:0: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/factory.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/factory.h:9, from /<>/source/CONCEPT/factory.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/object.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/CONCEPT/object.h:13, from /<>/source/CONCEPT/object.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/objectCreator.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/CONCEPT/objectCreator.h:9, from /<>/source/CONCEPT/objectCreator.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/moleculeObjectCreator.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/CONCEPT/objectCreator.h:9, from /<>/include/BALL/CONCEPT/moleculeObjectCreator.h:9, from /<>/source/CONCEPT/moleculeObjectCreator.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/persistenceManager.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/CONCEPT/persistenceManager.h:9, from /<>/source/CONCEPT/persistenceManager.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/preferencesObject.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/CONCEPT/preferencesObject.h:5, from /<>/source/CONCEPT/preferencesObject.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/processor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/source/CONCEPT/processor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/property.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/source/CONCEPT/property.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/CONCEPT/property.C: In member function ‘void BALL::PropertyManager::dump(std::ostream&, BALL::Size) const’: /<>/source/CONCEPT/property.C:316:22: warning: this statement may fall through [-Wimplicit-fallthrough=] s << "OBJECT: " << named_properties_[i].getObject(); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/CONCEPT/property.C:317:5: note: here case NamedProperty::SMART_OBJECT: ^~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/selectable.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/selectable.h:11, from /<>/source/CONCEPT/selectable.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/textPersistenceManager.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/CONCEPT/persistenceManager.h:9, from /<>/include/BALL/CONCEPT/textPersistenceManager.h:11, from /<>/source/CONCEPT/textPersistenceManager.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/timeStamp.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/CONCEPT/persistenceManager.h:9, from /<>/include/BALL/CONCEPT/timeStamp.h:21, from /<>/source/CONCEPT/timeStamp.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/visitor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/visitor.h:9, from /<>/source/CONCEPT/visitor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/molecularInformation.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/CONCEPT/molecularInformation.h:9, from /<>/source/CONCEPT/molecularInformation.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/XDRPersistenceManager.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/CONCEPT/persistenceManager.h:9, from /<>/include/BALL/CONCEPT/XDRPersistenceManager.h:9, from /<>/source/CONCEPT/XDRPersistenceManager.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/client.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/client.h:9, from /<>/source/CONCEPT/client.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/constants.o [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/exception.o In file included from /<>/source/COMMON/exception.C:5:0: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/COMMON/exception.C:338:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory) ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/hash.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/hash.h:9, from /<>/source/COMMON/hash.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/init.o [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/logStream.o [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/rtti.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/source/COMMON/rtti.C:8: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/version.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/source/COMMON/version.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/graphAlgorithms.o In file included from /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:9:0, from /<>/source/DATATYPE/GRAPH/graphAlgorithms.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/DATATYPE/GRAPH/graphAlgorithms.C:1:0: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h: In function ‘BALL::GRAPH::UndoEliminateOperation BALL::GRAPH::eliminateVertexUndoable(const typename BALL::GRAPH::GraphTraits::VertexType&, UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:184:129: warning: typedef ‘EdgeProperties’ locally defined but not used [-Wunused-local-typedefs] typedef typename boost::property_traits::type>::value_type EdgeProperties; ^~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/molecularGraph.o In file included from /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:9:0, from /<>/include/BALL/DATATYPE/GRAPH/molecularGraph.h:16, from /<>/source/DATATYPE/GRAPH/molecularGraph.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/molecularGraph.h:16:0, from /<>/source/DATATYPE/GRAPH/molecularGraph.C:1: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h: In function ‘BALL::GRAPH::UndoEliminateOperation BALL::GRAPH::eliminateVertexUndoable(const typename BALL::GRAPH::GraphTraits::VertexType&, UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:184:129: warning: typedef ‘EdgeProperties’ locally defined but not used [-Wunused-local-typedefs] typedef typename boost::property_traits::type>::value_type EdgeProperties; ^~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/treeWidth.o In file included from /<>/include/BALL/DATATYPE/GRAPH/treeWidth.h:13:0, from /<>/source/DATATYPE/GRAPH/treeWidth.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/treeWidth.h:21:0, from /<>/source/DATATYPE/GRAPH/treeWidth.C:1: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h: In function ‘BALL::GRAPH::UndoEliminateOperation BALL::GRAPH::eliminateVertexUndoable(const typename BALL::GRAPH::GraphTraits::VertexType&, UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:184:129: warning: typedef ‘EdgeProperties’ locally defined but not used [-Wunused-local-typedefs] typedef typename boost::property_traits::type>::value_type EdgeProperties; ^~~~~~~~~~~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/treeWidth.h:509:0, from /<>/source/DATATYPE/GRAPH/treeWidth.C:1: /<>/include/BALL/DATATYPE/GRAPH/treeWidth.iC: In constructor ‘BALL::TreeWidth::TreeWidth(const UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/treeWidth.iC:49:76: warning: typedef ‘FillInHeuristic’ locally defined but not used [-Wunused-local-typedefs] typedef typename TreeWidthImplementation::FillInHeuristic FillInHeuristic; ^~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/bitVector.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/bitVector.h:9, from /<>/source/DATATYPE/bitVector.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/contourSurface.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/contourSurface.h:9, from /<>/source/DATATYPE/contourSurface.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/hashGrid.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/hashGrid.h:9, from /<>/source/DATATYPE/hashGrid.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/options.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/source/DATATYPE/options.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularExpression.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/source/DATATYPE/regularExpression.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularData1D.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularData1D.h:9, from /<>/source/DATATYPE/regularData1D.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularData2D.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/CONCEPT/persistenceManager.h:9, from /<>/include/BALL/MATHS/vector2.h:9, from /<>/include/BALL/DATATYPE/regularData2D.h:9, from /<>/source/DATATYPE/regularData2D.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularData3D.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/include/BALL/DATATYPE/regularData3D.h:9, from /<>/source/DATATYPE/regularData3D.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/string.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/source/DATATYPE/string.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/atomicContactEnergy.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/ENERGY/atomicContactEnergy.h:11, from /<>/source/ENERGY/atomicContactEnergy.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/ENERGY/atomicContactEnergy.C:16:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/source/ENERGY/atomicContactEnergy.C:12:0: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::ACEFastAtomType*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::ACEFastAtomType*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::ACEFastAtomType*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::ACEFastAtomType*]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::ACEFastAtomType*; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/ENERGY/atomicContactEnergy.C:250:37: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/composedEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/ENERGY/composedEnergyProcessor.h:11, from /<>/source/ENERGY/composedEnergyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/coulomb.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/ENERGY/coulomb.h:11, from /<>/source/ENERGY/coulomb.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/distanceCoulomb.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/ENERGY/distanceCoulomb.h:11, from /<>/source/ENERGY/distanceCoulomb.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/energyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/ENERGY/energyProcessor.h:11, from /<>/source/ENERGY/energyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/amiraMeshFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/amiraMeshFile.h:10, from /<>/source/FORMAT/amiraMeshFile.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/antechamberFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/antechamberFile.h:9, from /<>/source/FORMAT/antechamberFile.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/FORMAT/antechamberFile.C: In member function ‘virtual bool BALL::AntechamberFile::write(const BALL::AtomContainer&)’: /<>/source/FORMAT/antechamberFile.C:100:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (atom_type.size()>10) ^~ /<>/source/FORMAT/antechamberFile.C:103:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ String atom_name = at_it->getElement().getSymbol(); ^~~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/bruker1DFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/JCAMPFile.h:9, from /<>/include/BALL/FORMAT/bruker1DFile.h:9, from /<>/source/FORMAT/bruker1DFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/bruker2DFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/JCAMPFile.h:9, from /<>/include/BALL/FORMAT/bruker2DFile.h:9, from /<>/source/FORMAT/bruker2DFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/commandlineParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/commandlineParser.h:5, from /<>/source/FORMAT/commandlineParser.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/dockResultFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/FORMAT/PDBFile.h:9, from /<>/include/BALL/FORMAT/dockResultFile.h:9, from /<>/source/FORMAT/dockResultFile.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/dockResultFile.h:11:0, from /<>/source/FORMAT/dockResultFile.C:6: /<>/include/BALL/DOCKING/COMMON/result.h:128:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getInputConformer(Ligand* lig) throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/DOCKING/COMMON/result.h:134:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getFirstOutputConformation(Ligand* lig) throw(Exception::GeneralException); ^~~~~ In file included from /<>/source/FORMAT/dockResultFile.C:6:0: /<>/include/BALL/FORMAT/dockResultFile.h:43:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Receptor* readReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:53:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Ligand* readLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:73:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector readResults() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:88:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Molecule* read() throw (Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:89:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool write(const Molecule& mol) throw (File::CannotWrite); ^~~~~ In file included from /<>/source/FORMAT/dockResultFile.C:6:0: /<>/include/BALL/FORMAT/dockResultFile.h:203:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptors_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:204:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptor_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:205:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:206:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:207:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readPDBAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:209:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResults_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:210:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:211:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readSubResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:212:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readEntry() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:224:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigands() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:225:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigand_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:226:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:227:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformations(FlexibleMolecule* target) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:228:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformation(Conformation* conformation) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:229:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readCoordinates() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:230:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibility() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:231:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibilities() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:232:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFullFlexResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:233:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readRotamericResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:234:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtoms() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:235:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:236:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBonds() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:237:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBond() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:240:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:241:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:242:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:243:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:244:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildResidue() throw(Exception::ParseError); ^~~~~ /<>/source/FORMAT/dockResultFile.C: In copy constructor ‘BALL::DockResultFile::DockResultFile(const BALL::DockResultFile&)’: /<>/source/FORMAT/dockResultFile.C:161:3: warning: base class ‘class std::basic_ios’ should be explicitly initialized in the copy constructor [-Wextra] DockResultFile::DockResultFile(const DockResultFile &df) ^~~~~~~~~~~~~~ /<>/source/FORMAT/dockResultFile.C:161:3: warning: base class ‘class BALL::GenericMolFile’ should be explicitly initialized in the copy constructor [-Wextra] /<>/source/FORMAT/dockResultFile.C:161:56: warning: unused parameter ‘df’ [-Wunused-parameter] DockResultFile::DockResultFile(const DockResultFile &df) ^~ /<>/source/FORMAT/dockResultFile.C: At global scope: /<>/source/FORMAT/dockResultFile.C:248:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:321:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (BALL::File::CannotWrite) ^~~~~ /<>/source/FORMAT/dockResultFile.C:547:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1067:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1098:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1161:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1199:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1241:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1272:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1280:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1288:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1332:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1366:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1409:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1455:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1490:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1517:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1547:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1610:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1648:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1689:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1718:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1781:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1810:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1845:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1876:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1884:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1932:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1967:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1975:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1989:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:2029:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CCP4File.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CCP4File.h:10, from /<>/source/FORMAT/CCP4File.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/FORMAT/CCP4File.C: In member function ‘virtual bool BALL::CCP4File::readSymmetryRecords()’: /<>/source/FORMAT/CCP4File.C:231:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (sym_lines < offset_symops_/80) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CIFFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from /<>/source/FORMAT/CIFFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/DCDFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/trajectoryFile.h:9, from /<>/include/BALL/FORMAT/DCDFile.h:9, from /<>/source/FORMAT/DCDFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/trajectoryFile.h:13:0, from /<>/include/BALL/FORMAT/DCDFile.h:9, from /<>/source/FORMAT/DCDFile.C:5: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/DSN6File.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/DSN6File.h:9, from /<>/source/FORMAT/DSN6File.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/GAMESSDatFile.h:9, from /<>/source/FORMAT/GAMESSDatFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/genericMolFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/source/FORMAT/genericMolFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/HINFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/HINFile.h:9, from /<>/source/FORMAT/HINFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/HMOFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/HMOFile.h:8, from /<>/source/FORMAT/HMOFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/INIFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/source/FORMAT/INIFile.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/JCAMPFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/JCAMPFile.h:9, from /<>/source/FORMAT/JCAMPFile.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/KCFFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/KCFFile.h:9, from /<>/source/FORMAT/KCFFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/lineBasedFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/source/FORMAT/lineBasedFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/molDB.o In file included from /<>/include/BALL/FORMAT/molDB.h:10:0, from /<>/source/FORMAT/molDB.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/molDB.h:18:0, from /<>/source/FORMAT/molDB.C:6: /<>/include/BALL/DOCKING/COMMON/result.h:128:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getInputConformer(Ligand* lig) throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/DOCKING/COMMON/result.h:134:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getFirstOutputConformation(Ligand* lig) throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/include/BALL/STRUCTURE/molecularSimilarity.h:17, from /<>/include/BALL/FORMAT/molDB.h:20, from /<>/source/FORMAT/molDB.C:6: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOLFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/MOLFile.h:9, from /<>/source/FORMAT/MOLFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/molFileFactory.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/molFileFactory.h:9, from /<>/source/FORMAT/molFileFactory.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/dockResultFile.h:11:0, from /<>/source/FORMAT/molFileFactory.C:11: /<>/include/BALL/DOCKING/COMMON/result.h:128:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getInputConformer(Ligand* lig) throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/DOCKING/COMMON/result.h:134:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getFirstOutputConformation(Ligand* lig) throw(Exception::GeneralException); ^~~~~ In file included from /<>/source/FORMAT/molFileFactory.C:11:0: /<>/include/BALL/FORMAT/dockResultFile.h:43:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Receptor* readReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:53:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Ligand* readLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:73:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector readResults() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:88:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Molecule* read() throw (Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:89:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool write(const Molecule& mol) throw (File::CannotWrite); ^~~~~ In file included from /<>/source/FORMAT/molFileFactory.C:11:0: /<>/include/BALL/FORMAT/dockResultFile.h:203:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptors_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:204:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptor_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:205:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:206:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:207:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readPDBAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:209:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResults_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:210:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:211:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readSubResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:212:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readEntry() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:224:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigands() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:225:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigand_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:226:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:227:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformations(FlexibleMolecule* target) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:228:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformation(Conformation* conformation) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:229:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readCoordinates() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:230:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibility() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:231:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibilities() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:232:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFullFlexResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:233:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readRotamericResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:234:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtoms() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:235:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:236:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBonds() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:237:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBond() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:240:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:241:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:242:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:243:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:244:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildResidue() throw(Exception::ParseError); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOPACInputFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/MOPACInputFile.h:13, from /<>/source/FORMAT/MOPACInputFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOPACOutputFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/MOPACOutputFile.h:13, from /<>/source/FORMAT/MOPACOutputFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/SDFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/MOLFile.h:9, from /<>/include/BALL/FORMAT/SDFile.h:9, from /<>/source/FORMAT/SDFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOL2File.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/MOL2File.h:9, from /<>/source/FORMAT/MOL2File.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/FORMAT/MOL2File.C:17:0: /<>/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:105:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/NMRStarFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from /<>/include/BALL/FORMAT/NMRStarFile.h:9, from /<>/source/FORMAT/NMRStarFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/NMRStarFile.h:17:0, from /<>/source/FORMAT/NMRStarFile.C:5: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/paramFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/paramFile.h:9, from /<>/source/FORMAT/paramFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/parameters.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/include/BALL/FORMAT/parameters.h:12, from /<>/source/FORMAT/parameters.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/parameterSection.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/source/FORMAT/parameterSection.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBdefs.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/FORMAT/PDBdefs.h:9, from /<>/source/FORMAT/PDBdefs.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBFileGeneral.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/FORMAT/PDBFile.h:9, from /<>/source/FORMAT/PDBFileGeneral.C:10: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBFileDetails.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/FORMAT/PDBFile.h:9, from /<>/source/FORMAT/PDBFileDetails.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/FORMAT/PDBFile.h:9, from /<>/source/FORMAT/PDBFileDetails.C:9: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {BALL::PDB::Structure::NCSMatrix}; _Tp = BALL::PDB::Structure::NCSMatrix; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In static member function ‘static void BALL::PDBFile::extractStructure_(const BALL::AtomContainer&, BALL::PDB::Structure&)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBInfo.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9:0, from /<>/include/BALL/FORMAT/PDBRecords.h:12, from /<>/include/BALL/FORMAT/PDBInfo.h:12, from /<>/source/FORMAT/PDBInfo.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBRecords.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9:0, from /<>/include/BALL/FORMAT/PDBRecords.h:12, from /<>/source/FORMAT/PDBRecords.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/pubchemDownloader.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/FORMAT/pubchemDownloader.h:9, from /<>/source/FORMAT/pubchemDownloader.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/resourceFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/FORMAT/resourceFile.h:9, from /<>/source/FORMAT/resourceFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/SCWRLRotamerFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/SCWRLRotamerFile.h:8, from /<>/source/FORMAT/SCWRLRotamerFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/rotamerLibrary.h:13:0, from /<>/source/FORMAT/SCWRLRotamerFile.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/trajectoryFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/trajectoryFile.h:9, from /<>/source/FORMAT/trajectoryFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/trajectoryFile.h:13:0, from /<>/source/FORMAT/trajectoryFile.C:5: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/source/FORMAT/trajectoryFile.C: In member function ‘bool BALL::TrajectoryFile::operator==(const BALL::TrajectoryFile&) const’: /<>/source/FORMAT/trajectoryFile.C:44:30: warning: self-comparison always evaluates to true [-Wtautological-compare] && (number_of_snapshots_ == number_of_snapshots_) ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/trajectoryFileFactory.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/trajectoryFileFactory.h:9, from /<>/source/FORMAT/trajectoryFileFactory.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/trajectoryFile.h:13:0, from /<>/source/FORMAT/trajectoryFileFactory.C:7: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/source/FORMAT/trajectoryFileFactory.C: In static member function ‘static BALL::TrajectoryFile* BALL::TrajectoryFileFactory::detectFormat(const BALL::String&)’: /<>/source/FORMAT/trajectoryFileFactory.C:103:68: warning: unused parameter ‘name’ [-Wunused-parameter] TrajectoryFile* TrajectoryFileFactory::detectFormat(const String& name) ^~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/TRRFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/trajectoryFile.h:9, from /<>/include/BALL/FORMAT/TRRFile.h:9, from /<>/source/FORMAT/TRRFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/trajectoryFile.h:13:0, from /<>/include/BALL/FORMAT/TRRFile.h:9, from /<>/source/FORMAT/TRRFile.C:5: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/FORMAT/TRRFile.C:7:0: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/XYZFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/XYZFile.h:9, from /<>/source/FORMAT/XYZFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CIFParserParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/build/source/FORMAT/CIFParserParser.C: In function ‘int CIFParserparse()’: /<>/build/source/FORMAT/CIFParserParser.C:1795:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] yyerror (YY_("syntax error")); ^ /<>/build/source/FORMAT/CIFParserParser.C:1939:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] yyerror (YY_("memory exhausted")); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 1 and 7648 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 5100 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 1 and 7648 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 5100 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 5100 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 5100 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ /<>/build/source/FORMAT/CIFParserParser.C:63:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] #define yyparse CIFParserparse ^ /<>/build/source/FORMAT/CIFParserParser.C:1096:1: note: in expansion of macro ‘yyparse’ yyparse (void) ^~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/ext/string_conversions.h:43, from /usr/include/c++/7/bits/basic_string.h:6349, from /usr/include/c++/7/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 __bos (__s), __fmt, __va_arg_pack ()); ^ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CIFParserLexer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserLexer.l:2: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/build/source/FORMAT/CIFParserLexer.C:2176:17: warning: ‘void yyunput(int, char*)’ defined but not used [-Wunused-function] static void yyunput (int c, char * yy_bp ) ^~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/GAMESSDatFile.h:9, from source/FORMAT/GAMESSDatParserParser.y:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserLexer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/GAMESSDatFile.h:9, from source/FORMAT/GAMESSDatParserLexer.l:2: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/build/source/FORMAT/GAMESSDatParserLexer.C:2637:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] static void yynoreturn yy_fatal_error (const char* msg ) ^~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/atom.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/source/KERNEL/atom.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/KERNEL/atom.C:5:0: /<>/include/BALL/KERNEL/atom.h: In constructor ‘BALL::Atom::Atom()’: /<>/include/BALL/KERNEL/atom.h:992:19: warning: ‘BALL::Atom::force_’ will be initialized after [-Wreorder] Vector3 force_; ^~~~~~ /<>/include/BALL/KERNEL/atom.h:623:27: warning: ‘BALL::MolecularInteractions* BALL::Atom::interactions’ [-Wreorder] MolecularInteractions* interactions; ^~~~~~~~~~~~ /<>/source/KERNEL/atom.C:21:2: warning: when initialized here [-Wreorder] Atom::Atom() ^~~~ In file included from /<>/source/KERNEL/atom.C:5:0: /<>/include/BALL/KERNEL/atom.h: In copy constructor ‘BALL::Atom::Atom(const BALL::Atom&, bool)’: /<>/include/BALL/KERNEL/atom.h:992:19: warning: ‘BALL::Atom::force_’ will be initialized after [-Wreorder] Vector3 force_; ^~~~~~ /<>/include/BALL/KERNEL/atom.h:623:27: warning: ‘BALL::MolecularInteractions* BALL::Atom::interactions’ [-Wreorder] MolecularInteractions* interactions; ^~~~~~~~~~~~ /<>/source/KERNEL/atom.C:40:2: warning: when initialized here [-Wreorder] Atom::Atom(const Atom& atom, bool deep) ^~~~ In file included from /<>/source/KERNEL/atom.C:5:0: /<>/include/BALL/KERNEL/atom.h: In constructor ‘BALL::Atom::Atom(BALL::Element&, const BALL::String&, const BALL::String&, BALL::Atom::Type, const Vector3&, const Vector3&, const Vector3&, float, float, BALL::Index)’: /<>/include/BALL/KERNEL/atom.h:992:19: warning: ‘BALL::Atom::force_’ will be initialized after [-Wreorder] Vector3 force_; ^~~~~~ /<>/include/BALL/KERNEL/atom.h:623:27: warning: ‘BALL::MolecularInteractions* BALL::Atom::interactions’ [-Wreorder] MolecularInteractions* interactions; ^~~~~~~~~~~~ /<>/source/KERNEL/atom.C:59:2: warning: when initialized here [-Wreorder] Atom::Atom ^~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/atomContainer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/source/KERNEL/atomContainer.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/bond.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/KERNEL/bond.h:9, from /<>/source/KERNEL/bond.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/chain.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/source/KERNEL/chain.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expression.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/KERNEL/expression.h:9, from /<>/source/KERNEL/expression.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/KERNEL/expression.C:6: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionPredicate.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/source/KERNEL/expressionPredicate.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionTree.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/include/BALL/KERNEL/expressionTree.h:11, from /<>/source/KERNEL/expressionTree.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/include/BALL/KERNEL/expressionTree.h:11, from /<>/include/BALL/KERNEL/expressionParser.h:9, from /<>/source/KERNEL/expressionParser.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/extractors.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/KERNEL/extractors.h:14, from /<>/source/KERNEL/extractors.C:10: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/fragment.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/source/KERNEL/fragment.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/global.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/global.h:11, from /<>/source/KERNEL/global.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/molecularInteractions.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/molecularInteractions.h:4, from /<>/source/KERNEL/molecularInteractions.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/molecule.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/source/KERNEL/molecule.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/nucleicAcid.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/include/BALL/KERNEL/nucleicAcid.h:9, from /<>/source/KERNEL/nucleicAcid.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/nucleotide.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/nucleotide.h:9, from /<>/source/KERNEL/nucleotide.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/PDBAtom.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/PDBAtom.h:9, from /<>/source/KERNEL/PDBAtom.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/predicate.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/KERNEL/predicate.h:11, from /<>/source/KERNEL/predicate.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/protein.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/source/KERNEL/protein.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/PTE.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/source/KERNEL/PTE.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/residue.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/source/KERNEL/residue.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/KERNEL/residue.C:8:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/secondaryStructure.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/secondaryStructure.h:9, from /<>/source/KERNEL/secondaryStructure.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/selector.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/KERNEL/expression.h:9, from /<>/include/BALL/KERNEL/selector.h:11, from /<>/source/KERNEL/selector.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/standardPredicates.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/KERNEL/standardPredicates.h:11, from /<>/source/KERNEL/standardPredicates.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/KERNEL/standardPredicates.C:7: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/system.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/source/KERNEL/system.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionParserParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/include/BALL/KERNEL/expressionTree.h:11, from /<>/include/BALL/KERNEL/expressionParser.h:9, from source/KERNEL/expressionParserParser.y:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ source/KERNEL/expressionParserParser.y:11:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] source/KERNEL/expressionParserParser.y:126:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] [ 26%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionParserLexer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/include/BALL/KERNEL/expressionTree.h:11, from /<>/include/BALL/KERNEL/expressionParser.h:9, from source/KERNEL/expressionParserLexer.l:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/build/source/KERNEL/expressionParserLexer.C:1845:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] static void yynoreturn yy_fatal_error (const char* msg ) ^~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/analyticalGeometry.o In file included from /<>/include/BALL/MATHS/analyticalGeometry.h:9:0, from /<>/source/MATHS/analyticalGeometry.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/angle.o In file included from /<>/include/BALL/MATHS/angle.h:9:0, from /<>/source/MATHS/angle.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/box3.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/box3.h:11, from /<>/source/MATHS/box3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/circle3.o In file included from /<>/include/BALL/MATHS/circle3.h:11:0, from /<>/source/MATHS/circle3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/cubicSpline1D.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/cubicSpline1D.h:8, from /<>/source/MATHS/cubicSpline1D.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/cubicSpline2D.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/cubicSpline1D.h:8, from /<>/include/BALL/MATHS/cubicSpline2D.h:8, from /<>/source/MATHS/cubicSpline2D.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/function.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/function.h:9, from /<>/source/MATHS/function.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/line3.o In file included from /<>/include/BALL/MATHS/line3.h:11:0, from /<>/source/MATHS/line3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/matrix44.o In file included from /<>/include/BALL/MATHS/matrix44.h:11:0, from /<>/source/MATHS/matrix44.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/parsedFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MATHS/parsedFunction.h:9, from /<>/source/MATHS/parsedFunction.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/plane3.o In file included from /<>/include/BALL/MATHS/line3.h:11:0, from /<>/include/BALL/MATHS/plane3.h:16, from /<>/source/MATHS/plane3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/piecewiseFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/piecewiseFunction.h:9, from /<>/source/MATHS/piecewiseFunction.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/piecewisePolynomial.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/piecewiseFunction.h:9, from /<>/include/BALL/MATHS/piecewisePolynomial.h:11, from /<>/source/MATHS/piecewisePolynomial.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/quaternion.o In file included from /<>/include/BALL/MATHS/matrix44.h:11:0, from /<>/include/BALL/MATHS/quaternion.h:8, from /<>/source/MATHS/quaternion.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/randomNumberGenerator.o In file included from /<>/source/MATHS/randomNumberGenerator.C:7:0: /<>/include/BALL/MATHS/randomNumberGenerator.h:72:58: warning: ‘RandomNumberGenerator’ is deprecated [-Wdeprecated-declarations] RandomNumberGenerator(const RandomNumberGenerator& rng); ^ In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/source/MATHS/randomNumberGenerator.C:8: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/MATHS/randomNumberGenerator.C:20:5: warning: ‘RandomNumberGenerator’ is deprecated [-Wdeprecated-declarations] rng) ^ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/simpleBox3.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/simpleBox3.h:11, from /<>/source/MATHS/simpleBox3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/sphere3.o In file included from /<>/include/BALL/MATHS/line3.h:11:0, from /<>/include/BALL/MATHS/plane3.h:16, from /<>/include/BALL/MATHS/sphere3.h:15, from /<>/source/MATHS/sphere3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/surface.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/include/BALL/MATHS/surface.h:9, from /<>/source/MATHS/surface.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/vector2.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/source/MATHS/vector2.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/vector3.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/source/MATHS/vector3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/vector4.o In file included from /<>/include/BALL/MATHS/vector4.h:9:0, from /<>/source/MATHS/vector4.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/FFT1D.o In file included from /<>/include/BALL/MATHS/FFT1D.h:9:0, from /<>/source/MATHS/FFT1D.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/FFT2D.o In file included from /<>/include/BALL/MATHS/FFT2D.h:9:0, from /<>/source/MATHS/FFT2D.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/FFT3D.o In file included from /<>/include/BALL/MATHS/FFT3D.h:9:0, from /<>/source/MATHS/FFT3D.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/parsedFunctionParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MATHS/parsedFunction.h:9, from source/MATHS/parsedFunctionParser.y:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/parsedFunctionLexer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MATHS/parsedFunction.h:9, from source/MATHS/parsedFunctionLexer.l:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/build/source/MATHS/parsedFunctionLexer.C:1869:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] static void yynoreturn yy_fatal_error (const char* msg ) ^~~~~~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amber.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SYSTEM/path.h:22, from /<>/source/MOLMEC/AMBER/amber.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amber.h:14:0, from /<>/source/MOLMEC/AMBER/amber.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amber.C:8:0: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /<>/source/MOLMEC/AMBER/amber.C:9: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14:0, from /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /<>/source/MOLMEC/AMBER/amber.C:9: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amber.C:9:0: /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:55:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual bool setup() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amber.C:10:0: /<>/include/BALL/MOLMEC/AMBER/amberBend.h:57:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amber.C:11:0: /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:111:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/source/MOLMEC/AMBER/amber.C:12: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amber.C:12:0: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/AMBER/amber.C:151:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberBend.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberBend.h:10, from /<>/source/MOLMEC/AMBER/amberBend.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /<>/source/MOLMEC/AMBER/amberBend.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14:0, from /<>/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /<>/source/MOLMEC/AMBER/amberBend.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberBend.C:5:0: /<>/include/BALL/MOLMEC/AMBER/amberBend.h:57:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amber.h:14:0, from /<>/source/MOLMEC/AMBER/amberBend.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberBend.C:6:0: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/AMBER/amberBend.C:38:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberNonBonded.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:11, from /<>/source/MOLMEC/AMBER/amberNonBonded.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/source/MOLMEC/AMBER/amberNonBonded.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23:0, from /<>/source/MOLMEC/AMBER/amberNonBonded.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/source/MOLMEC/AMBER/amberNonBonded.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/source/MOLMEC/AMBER/amberNonBonded.C:5: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberNonBonded.C:5:0: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberNonBonded.C:6:0: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/AMBER/amberNonBonded.C:210:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/AMBER/amberNonBonded.C:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/AMBER/amberNonBonded.C: In member function ‘virtual void BALL::AmberNonBonded::update(const std::vector >&)’: /<>/source/MOLMEC/AMBER/amberNonBonded.C:533:18: warning: the compiler can assume that the address of ‘atom_vector’ will never be NULL [-Waddress] if(&atom_vector==0) ~~~~~~~~~~~~^~~ /<>/source/MOLMEC/AMBER/amberNonBonded.C: At global scope: /<>/source/MOLMEC/AMBER/amberNonBonded.C:547:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/AMBER/amberNonBonded.C: In member function ‘virtual void BALL::AmberNonBonded::update(const std::vector >&)’: /<>/source/MOLMEC/AMBER/amberNonBonded.C:533:3: warning: nonnull argument ‘atom_vector’ compared to NULL [-Wnonnull-compare] if(&atom_vector==0) ^~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberStretch.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:10, from /<>/source/MOLMEC/AMBER/amberStretch.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /<>/source/MOLMEC/AMBER/amberStretch.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14:0, from /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /<>/source/MOLMEC/AMBER/amberStretch.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberStretch.C:5:0: /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:55:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual bool setup() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amber.h:14:0, from /<>/source/MOLMEC/AMBER/amberStretch.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberStretch.C:6:0: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/AMBER/amberStretch.C:38:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberTorsion.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:11, from /<>/source/MOLMEC/AMBER/amberTorsion.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:19, from /<>/source/MOLMEC/AMBER/amberTorsion.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:19:0, from /<>/source/MOLMEC/AMBER/amberTorsion.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:23:0, from /<>/source/MOLMEC/AMBER/amberTorsion.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberTorsion.C:5:0: /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:111:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberTorsion.C:6:0: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/AMBER/amberTorsion.C:55:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFTypeProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:9, from /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1:0: /<>/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:105:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:8:0: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:103:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from /<>/source/MOLMEC/AMBER/GAFFCESParser.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/GAFFCESParser.C:15:0: /<>/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:105:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from source/MOLMEC/AMBER/GAFFCESParserParser.y:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserLexer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from source/MOLMEC/AMBER/GAFFCESParserLexer.l:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/build/source/MOLMEC/AMBER/GAFFCESParserLexer.C:1996:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] static void yynoreturn yy_fatal_error (const char* msg ) ^~~~~~~~~~~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmm.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmm.h:11, from /<>/source/MOLMEC/CHARMM/charmm.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmm.h:15:0, from /<>/source/MOLMEC/CHARMM/charmm.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmm.C:7:0: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /<>/source/MOLMEC/CHARMM/charmm.C:8: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14:0, from /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /<>/source/MOLMEC/CHARMM/charmm.C:8: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmm.C:8:0: /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:55:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual bool setup() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmm.C:9:0: /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:56:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmm.C:10:0: /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:116:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmm.C:11:0: /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:83:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:33:0, from /<>/source/MOLMEC/CHARMM/charmm.C:12: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmm.C:12:0: /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:113:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:160:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/CHARMM/charmm.C:158:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmBend.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:10, from /<>/source/MOLMEC/CHARMM/charmmBend.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /<>/source/MOLMEC/CHARMM/charmmBend.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14:0, from /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /<>/source/MOLMEC/CHARMM/charmmBend.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmBend.C:5:0: /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:56:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmm.h:15:0, from /<>/source/MOLMEC/CHARMM/charmmBend.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmBend.C:6:0: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/CHARMM/charmmBend.C:38:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmImproperTorsion.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:11, from /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:23, from /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:23:0, from /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:27:0, from /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5:0: /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:83:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:6:0: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:55:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmNonBonded.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:13, from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:29, from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:29:0, from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:33, from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:33:0, from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:5:0: /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:113:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:160:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:6:0: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:214:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:493:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmStretch.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:10, from /<>/source/MOLMEC/CHARMM/charmmStretch.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /<>/source/MOLMEC/CHARMM/charmmStretch.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14:0, from /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /<>/source/MOLMEC/CHARMM/charmmStretch.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmStretch.C:5:0: /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:55:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual bool setup() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmm.h:15:0, from /<>/source/MOLMEC/CHARMM/charmmStretch.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmStretch.C:6:0: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/CHARMM/charmmStretch.C:39:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmTorsion.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:11, from /<>/source/MOLMEC/CHARMM/charmmTorsion.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:23, from /<>/source/MOLMEC/CHARMM/charmmTorsion.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:23:0, from /<>/source/MOLMEC/CHARMM/charmmTorsion.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:27:0, from /<>/source/MOLMEC/CHARMM/charmmTorsion.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmTorsion.C:5:0: /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:116:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmTorsion.C:6:0: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/CHARMM/charmmTorsion.C:56:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/assignTypes.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/MOLMEC/COMMON/assignTypes.h:13, from /<>/source/MOLMEC/COMMON/assignTypes.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/atomVector.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/atomVector.h:11, from /<>/source/MOLMEC/COMMON/atomVector.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/bendComponent.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:10, from /<>/source/MOLMEC/COMMON/bendComponent.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/source/MOLMEC/COMMON/bendComponent.C:1: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14:0, from /<>/source/MOLMEC/COMMON/bendComponent.C:1: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/bendComponent.C:3:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/chargeRuleProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:13, from /<>/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /<>/include/BALL/MOLMEC/COMMON/chargeRuleProcessor.h:13, from /<>/source/MOLMEC/COMMON/chargeRuleProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceField.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:11, from /<>/source/MOLMEC/COMMON/forceField.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/forceField.C:7:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/source/MOLMEC/COMMON/forceField.C:9: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/forceField.C:9:0: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/COMMON/forceField.C:527:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/COMMON/forceField.C:552:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/COMMON/forceField.C:645:36: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& ForceField::error() throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceFieldComponent.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/source/MOLMEC/COMMON/forceFieldComponent.C:8: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/source/MOLMEC/COMMON/forceFieldComponent.C:8: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/forceFieldComponent.C:8:0: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/COMMON/forceFieldComponent.C: In copy constructor ‘BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)’: /<>/source/MOLMEC/COMMON/forceFieldComponent.C:34:2: warning: base class ‘class BALL::ScoringComponent’ should be explicitly initialized in the copy constructor [-Wextra] ForceFieldComponent::ForceFieldComponent(const ForceFieldComponent& force_field_component) ^~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/COMMON/forceFieldComponent.C: At global scope: /<>/source/MOLMEC/COMMON/forceFieldComponent.C:50:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/COMMON/forceFieldComponent.C:57:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/COMMON/forceFieldComponent.C:101:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/gradient.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/gradient.h:16, from /<>/source/MOLMEC/COMMON/gradient.C:8: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/periodicBoundary.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/periodicBoundary.h:11, from /<>/source/MOLMEC/COMMON/periodicBoundary.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/periodicBoundary.C:6:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/periodicBoundary.C:7:0: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/periodicBoundary.C:8:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:28:0, from /<>/source/MOLMEC/COMMON/periodicBoundary.C:7: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = const BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:29: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = const BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/source/MOLMEC/COMMON/periodicBoundary.C:542:1: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/radiusRuleProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:13, from /<>/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /<>/include/BALL/MOLMEC/COMMON/radiusRuleProcessor.h:13, from /<>/source/MOLMEC/COMMON/radiusRuleProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleEvaluator.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:13, from /<>/source/MOLMEC/COMMON/ruleEvaluator.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:13, from /<>/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /<>/source/MOLMEC/COMMON/ruleProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShot.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /<>/source/MOLMEC/COMMON/snapShot.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/snapShot.C:6:0: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/source/MOLMEC/COMMON/snapShot.C:183:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory) ^~~~~ /<>/source/MOLMEC/COMMON/snapShot.C:235:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory) ^~~~~ /<>/source/MOLMEC/COMMON/snapShot.C:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory) ^~~~~ /<>/source/MOLMEC/COMMON/snapShot.C:305:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory) ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShotManager.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/source/MOLMEC/COMMON/snapShotManager.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:11:0, from /<>/source/MOLMEC/COMMON/snapShotManager.C:8: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/snapShotManager.C:8:0: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/snapShotManager.C:9:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/COMMON/snapShotManager.C:389:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void SnapShotManager::takeSnapShot() throw(File::CannotWrite) ^~~~~ /<>/source/MOLMEC/COMMON/snapShotManager.C:583:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(File::CannotWrite) ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/source/MOLMEC/COMMON/snapShotManager.C:7: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::SnapShot&}; _Tp = BALL::SnapShot; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {BALL::SnapShot}; _Tp = BALL::SnapShot; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/source/MOLMEC/COMMON/snapShotManager.C:7: /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool BALL::SnapShotManager::readFromFile()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/source/MOLMEC/COMMON/snapShotManager.C:7: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void BALL::SnapShotManager::takeSnapShot()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/support.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/support.h:12, from /<>/source/MOLMEC/COMMON/support.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/source/MOLMEC/COMMON/support.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/support.C:5:0: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/source/MOLMEC/COMMON/support.C:39:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory) ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:28:0, from /<>/source/MOLMEC/COMMON/support.C:5: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::Atom*; BALL::Position = unsigned int]’ /<>/source/MOLMEC/COMMON/support.C:235:39: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = const BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = const BALL::Atom*; BALL::Position = unsigned int]’ /<>/source/MOLMEC/COMMON/support.C:504:62: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/stretchComponent.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:10, from /<>/source/MOLMEC/COMMON/stretchComponent.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/source/MOLMEC/COMMON/stretchComponent.C:1: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14:0, from /<>/source/MOLMEC/COMMON/stretchComponent.C:1: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/stretchComponent.C:3:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typenameRuleProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:13, from /<>/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /<>/include/BALL/MOLMEC/COMMON/typenameRuleProcessor.h:13, from /<>/source/MOLMEC/COMMON/typenameRuleProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typeRuleProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:13, from /<>/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /<>/include/BALL/MOLMEC/COMMON/typeRuleProcessor.h:13, from /<>/source/MOLMEC/COMMON/typeRuleProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/energyMinimizer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/source/MOLMEC/MINIMIZATION/energyMinimizer.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/energyMinimizer.C:9:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:11:0, from /<>/source/MOLMEC/MINIMIZATION/energyMinimizer.C:10: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/energyMinimizer.C:10:0: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/lineSearch.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/MINIMIZATION/lineSearch.h:13, from /<>/source/MOLMEC/MINIMIZATION/lineSearch.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/lineSearch.C:10:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/steepestDescent.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/include/BALL/MOLMEC/MINIMIZATION/steepestDescent.h:11, from /<>/source/MOLMEC/MINIMIZATION/steepestDescent.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/steepestDescent.C:8:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:11:0, from /<>/source/MOLMEC/MINIMIZATION/steepestDescent.C:9: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/steepestDescent.C:9:0: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/strangLBFGS.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/include/BALL/MOLMEC/MINIMIZATION/strangLBFGS.h:11, from /<>/source/MOLMEC/MINIMIZATION/strangLBFGS.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/strangLBFGS.C:10:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/shiftedLVMM.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/include/BALL/MOLMEC/MINIMIZATION/shiftedLVMM.h:11, from /<>/source/MOLMEC/MINIMIZATION/shiftedLVMM.C:10: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/shiftedLVMM.C:11:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/conjugateGradient.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/include/BALL/MOLMEC/MINIMIZATION/conjugateGradient.h:11, from /<>/source/MOLMEC/MINIMIZATION/conjugateGradient.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/conjugateGradient.C:11:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/molecularDynamics.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:14, from /<>/source/MOLMEC/MDSIMULATION/molecularDynamics.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MDSIMULATION/molecularDynamics.C:8:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:11:0, from /<>/source/MOLMEC/MDSIMULATION/molecularDynamics.C:9: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MDSIMULATION/molecularDynamics.C:9:0: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/microCanonicalMD.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:14, from /<>/include/BALL/MOLMEC/MDSIMULATION/microCanonicalMD.h:11, from /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:8:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:11:0, from /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:9: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:9:0: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:14, from /<>/include/BALL/MOLMEC/MDSIMULATION/microCanonicalMD.h:11, from /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:7: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::MicroCanonicalMD::AuxFactors&}; _Tp = BALL::MicroCanonicalMD::AuxFactors; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:14, from /<>/include/BALL/MOLMEC/MDSIMULATION/microCanonicalMD.h:11, from /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:7: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BALL::MicroCanonicalMD::calculateFactors()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/canonicalMD.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:14, from /<>/include/BALL/MOLMEC/MDSIMULATION/canonicalMD.h:11, from /<>/source/MOLMEC/MDSIMULATION/canonicalMD.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MDSIMULATION/canonicalMD.C:8:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:11:0, from /<>/source/MOLMEC/MDSIMULATION/canonicalMD.C:9: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MDSIMULATION/canonicalMD.C:9:0: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SYSTEM/path.h:22, from /<>/source/MOLMEC/MMFF94/MMFF94.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:17:0, from /<>/source/MOLMEC/MMFF94/MMFF94.C:11: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25:0, from /<>/source/MOLMEC/MMFF94/MMFF94.C:11: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94.C:11:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94.C:12: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11:0, from /<>/source/MOLMEC/MMFF94/MMFF94.C:12: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94.C:12:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:102:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94.C:13:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:87:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:15:0, from /<>/source/MOLMEC/MMFF94/MMFF94.C:14: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94.C:14:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:89:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:105:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94.C:15:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:59:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94.C:147:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94StretchBend.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11:0, from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:15:0, from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:102:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:17:0, from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:8:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C: In member function ‘double BALL::MMFF94StretchBend::calculateStretchR0(const BALL::Bond&)’: /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:1082:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(t1 == BALL_ATOM_DEFAULT_TYPE || t2 == BALL_ATOM_DEFAULT_TYPE) { /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:1082:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(t1 == BALL_ATOM_DEFAULT_TYPE || t2 == BALL_ATOM_DEFAULT_TYPE) { In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::MMFF94StretchBend::Bend&}; _Tp = BALL::MMFF94StretchBend::Bend; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::MMFF94StretchBend::Stretch&}; _Tp = BALL::MMFF94StretchBend::Stretch; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::MMFF94StretchBend::StretchBend&}; _Tp = BALL::MMFF94StretchBend::StretchBend; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool BALL::MMFF94StretchBend::setupStretchBends_()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool BALL::MMFF94StretchBend::setupBends_()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool BALL::MMFF94StretchBend::setupStretches_()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Torsion.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11:0, from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:15:0, from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:19:0, from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:87:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:8:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:87:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::MMFF94Torsion::Torsion&}; _Tp = BALL::MMFF94Torsion::Torsion; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual bool BALL::MMFF94Torsion::setup()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Parameters.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:9:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:17:0, from /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:10: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:10:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:39:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:641:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:1220:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11:0, from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:15:0, from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:19:0, from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:59:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:8:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:70:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Processors.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11:0, from /<>/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/source/MOLMEC/MMFF94/MMFF94Processors.C:14: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Processors.C: In member function ‘virtual bool BALL::MMFF94ChargeProcessor::finish()’: /<>/source/MOLMEC/MMFF94/MMFF94Processors.C:816:20: warning: enum constant in boolean context [-Wint-in-bool-context] return Processor::CONTINUE; ^~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94NonBonded.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11:0, from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:15, from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:15:0, from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:19:0, from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:89:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:105:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:8:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:141:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:189:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/atomTypes.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/atomTypes.h:9, from /<>/source/MOLMEC/PARAMETER/atomTypes.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/charmmEEF1.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/charmmEEF1.h:12, from /<>/source/MOLMEC/PARAMETER/charmmEEF1.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/cosineTorsion.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:9, from /<>/source/MOLMEC/PARAMETER/cosineTorsion.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/forceFieldParameters.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/PARAMETER/forceFieldParameters.h:10, from /<>/source/MOLMEC/PARAMETER/forceFieldParameters.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/lennardJones.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /<>/source/MOLMEC/PARAMETER/lennardJones.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/potential1210.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/potential1210.h:9, from /<>/source/MOLMEC/PARAMETER/potential1210.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticAngleBend.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/quadraticAngleBend.h:9, from /<>/source/MOLMEC/PARAMETER/quadraticAngleBend.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticBondStretch.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/quadraticBondStretch.h:9, from /<>/source/MOLMEC/PARAMETER/quadraticBondStretch.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticImproperTorsion.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/quadraticImproperTorsion.h:12, from /<>/source/MOLMEC/PARAMETER/quadraticImproperTorsion.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/residueTorsions.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/residueTorsions.h:11, from /<>/source/MOLMEC/PARAMETER/residueTorsions.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/templates.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/templates.h:11, from /<>/source/MOLMEC/PARAMETER/templates.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/anisotropyShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/KERNEL/bond.h:9, from /<>/include/BALL/NMR/anisotropyShiftProcessor.h:11, from /<>/source/NMR/anisotropyShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/clearShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/clearShiftProcessor.h:11, from /<>/source/NMR/clearShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/EFShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/EFShiftProcessor.h:11, from /<>/source/NMR/EFShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/empiricalHSShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/FORMAT/PDBFile.h:9, from /<>/source/NMR/empiricalHSShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/NMR/empiricalHSShiftProcessor.C:6:0: /<>/include/BALL/NMR/empiricalHSShiftProcessor.h:337:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/NMR/empiricalHSShiftProcessor.C:9:0: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:1579:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C: In constructor ‘BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_::ShiftHyperSurface_(BALL::String, BALL::String, BALL::String, BALL::String, int)’: /<>/source/NMR/empiricalHSShiftProcessor.C:1577:92: warning: unused parameter ‘atomtype’ [-Wunused-parameter] EmpiricalHSShiftProcessor::ShiftHyperSurface_::ShiftHyperSurface_(String filename, String atomtype, ^~~~~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/experiment.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/include/BALL/NMR/peak.h:11, from /<>/include/BALL/NMR/peakList.h:11, from /<>/include/BALL/NMR/experiment.h:11, from /<>/source/NMR/experiment.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/HBondShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/include/BALL/NMR/HBondShiftProcessor.h:11, from /<>/source/NMR/HBondShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/haighMallionShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/NMR/haighMallionShiftProcessor.h:8, from /<>/source/NMR/haighMallionShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/createSpectrumProcessor.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/include/BALL/NMR/peak.h:11, from /<>/include/BALL/NMR/createSpectrumProcessor.h:11, from /<>/source/NMR/createSpectrumProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/NMR/createSpectrumProcessor.C:5:0: /<>/include/BALL/NMR/createSpectrumProcessor.h:75:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound, Exception::ParseError); ^~~~~ /<>/include/BALL/NMR/createSpectrumProcessor.h:105:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError, Exception::FileNotFound); ^~~~~ /<>/source/NMR/createSpectrumProcessor.C:21:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound, Exception::ParseError) ^~~~~ /<>/source/NMR/createSpectrumProcessor.C:52:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError, Exception::FileNotFound) ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/peak.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/include/BALL/NMR/peak.h:11, from /<>/source/NMR/peak.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/peakList.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/include/BALL/NMR/peak.h:11, from /<>/include/BALL/NMR/peakList.h:11, from /<>/source/NMR/peakList.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/shiftModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/shiftModel.h:11, from /<>/source/NMR/shiftModel.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/NMR/shiftModel.C:5:0: /<>/include/BALL/NMR/shiftModel.h:111:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/NMR/shiftModel.h:120:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ /<>/include/BALL/NMR/shiftModel.h:187:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/NMR/shiftModel.C:14:0: /<>/include/BALL/NMR/empiricalHSShiftProcessor.h:337:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/source/NMR/shiftModel.C:92:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/NMR/shiftModel.C:142:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/NMR/shiftModel.C:197:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer) ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/shiftModule.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/source/NMR/shiftModule.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/spectrum.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/include/BALL/NMR/peak.h:11, from /<>/include/BALL/NMR/peakList.h:11, from /<>/include/BALL/NMR/spectrum.h:11, from /<>/source/NMR/spectrum.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/NMR/spectrum.h:335:0, from /<>/source/NMR/spectrum.C:5: /<>/include/BALL/NMR/spectrum.iC: In member function ‘void BALL::Spectrum::convertToLorentzian() [with DataT = BALL::TRegularData1D; PeakT = BALL::Peak; PositionT = float]’: /<>/include/BALL/NMR/spectrum.iC:294:23: warning: variable ‘width’ set but not used [-Wunused-but-set-variable] double separation, width; ^~~~~ /<>/include/BALL/NMR/spectrum.iC: In member function ‘void BALL::Spectrum::computeAllMoments(int) [with DataT = BALL::TRegularData2D; PeakT = BALL::Peak >; PositionT = BALL::TVector2]’: /<>/include/BALL/NMR/spectrum.iC:477:62: warning: unused parameter ‘moment_number’ [-Wunused-parameter] void Spectrum::computeAllMoments(int moment_number) ^~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/johnsonBoveyShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/NMR/johnsonBoveyShiftProcessor.h:8, from /<>/source/NMR/johnsonBoveyShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/randomCoilShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/randomCoilShiftProcessor.h:8, from /<>/source/NMR/randomCoilShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/PLUGIN/BALLPlugin.o [ 50%] Building CXX object CMakeFiles/BALL.dir/source/PLUGIN/pluginManager.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/PLUGIN/pluginManager.h:9, from /<>/source/PLUGIN/pluginManager.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/PLUGIN/pluginHandler.o [ 50%] Building CXX object CMakeFiles/BALL.dir/source/PYTHON/pyInterpreter.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/PYTHON/pyInterpreter.h:11, from /<>/source/PYTHON/pyInterpreter.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/PYTHON/pyInterpreter.C:7:0: /<>/include/BALL/PYTHON/pyInterpreter.h:102:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/source/PYTHON/pyInterpreter.C:356:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/aromaticityProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/aromaticityProcessor.h:10, from /<>/source/QSAR/aromaticityProcessor.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/aromaticityProcessor.C: In member function ‘BALL::Size BALL::AromaticityProcessor::countPiElectrons_(BALL::HashSet&)’: /<>/source/QSAR/aromaticityProcessor.C:1010:6: warning: this statement may fall through [-Wimplicit-fallthrough=] if ((*i)->countBonds() > 3) ^~ /<>/source/QSAR/aromaticityProcessor.C:1014:5: note: here case 6: // C ^~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/automaticModelCreator.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/automaticModelCreator.h:2, from /<>/source/QSAR/automaticModelCreator.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/automaticModelCreator.h:2, from /<>/source/QSAR/automaticModelCreator.C:1: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘BALL::QSAR::Model* BALL::QSAR::AutomaticModelCreator::generateModel()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/bayesModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/bayesModel.h:10, from /<>/source/QSAR/bayesModel.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/classificationModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/source/QSAR/classificationModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/classificationValidation.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/classificationValidation.h:10, from /<>/source/QSAR/classificationValidation.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/configIO.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/QSAR/configIO.h:9, from /<>/source/QSAR/configIO.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/connectivityBase.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/connectivityBase.h:14, from /<>/source/QSAR/connectivityBase.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/connectivityBase.h:14, from /<>/source/QSAR/connectivityBase.C:6: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void BALL::ConnectivityBase::recursion_(std::vector&, const BALL::Atom*, BALL::HashMap&)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/connectivityDescriptors.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/connectivityBase.h:14, from /<>/include/BALL/QSAR/connectivityDescriptors.h:10, from /<>/source/QSAR/connectivityDescriptors.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/descriptor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/source/QSAR/descriptor.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/exception.o In file included from /<>/include/BALL/QSAR/exception.h:9:0, from /<>/source/QSAR/exception.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kernel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/kernel.h:10, from /<>/source/QSAR/kernel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kernelModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/source/QSAR/kernelModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/kernelModel.C: In member function ‘virtual void BALL::QSAR::KernelModel::calculateOffsets()’: /<>/source/QSAR/kernelModel.C:60:8: warning: unused variable ‘no_act’ [-Wunused-variable] int no_act = training_result_.cols(); ^~~~~~ /<>/source/QSAR/kernelModel.C: In member function ‘virtual void BALL::QSAR::KernelModel::saveToFile(std::__cxx11::string)’: /<>/source/QSAR/kernelModel.C:99:9: warning: variable ‘sterr’ set but not used [-Wunused-but-set-variable] bool sterr = 0; ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/latentVariableModel.o [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/linearModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/source/QSAR/linearModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/logitModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/logitModel.h:10, from /<>/source/QSAR/logitModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/logitModel.C: In member function ‘virtual Eigen::VectorXd BALL::QSAR::LogitModel::predict(const std::vector&, bool)’: /<>/source/QSAR/logitModel.C:90:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i = 0; i < res.rows(); i++) ~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/logitModel.h:10, from /<>/source/QSAR/logitModel.C:6: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void BALL::QSAR::LogitModel::readFromFile(std::__cxx11::string)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/Model.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/source/QSAR/Model.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/Model.C: In member function ‘void BALL::QSAR::Model::readDescriptorInformation()’: /<>/source/QSAR/Model.C:182:29: warning: variable ‘y_transform’ set but not used [-Wunused-but-set-variable] bool transform = 0; bool y_transform = 0; ^~~~~~~~~~~ /<>/source/QSAR/Model.C: In member function ‘Eigen::VectorXd BALL::QSAR::Model::getSubstanceVector(const VectorXd&, bool)’: /<>/source/QSAR/Model.C:316:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( (data != NULL && data->getNoDescriptors() != substance.rows()) || (data == NULL && substance.rows() <= *(descriptor_IDs_.end()--)) ) ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/Model.C:316:109: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( (data != NULL && data->getNoDescriptors() != substance.rows()) || (data == NULL && substance.rows() <= *(descriptor_IDs_.end()--)) ) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/Model.C: In member function ‘void BALL::QSAR::Model::readVector(Eigen::RowVectorXd&, std::ifstream&, unsigned int, bool)’: /<>/source/QSAR/Model.C:486:94: warning: unused parameter ‘column_vector’ [-Wunused-parameter] void Model::readVector(Eigen::RowVectorXd & vec, ifstream& in, unsigned int no_cells, bool column_vector) ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/source/QSAR/Model.C:6: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In member function ‘void BALL::QSAR::Model::readModelParametersFromFile(std::ifstream&)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/modelFactory.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/factory.h:9, from /<>/include/BALL/QSAR/modelFactory.h:9, from /<>/source/QSAR/modelFactory.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/nBModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/bayesModel.h:10, from /<>/include/BALL/QSAR/nBModel.h:14, from /<>/source/QSAR/nBModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/nBModel.C: In member function ‘virtual void BALL::QSAR::NBModel::saveToFile(std::__cxx11::string)’: /<>/source/QSAR/nBModel.C:241:9: warning: variable ‘centered_y’ set but not used [-Wunused-but-set-variable] bool centered_y = 0; ^~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/QSAR/common.h:4, from /<>/include/BALL/QSAR/nBModel.h:10, from /<>/source/QSAR/nBModel.C:6: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/QSAR/common.h:4, from /<>/include/BALL/QSAR/nBModel.h:10, from /<>/source/QSAR/nBModel.C:6: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual std::vector BALL::QSAR::NBModel::getParameters() const’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/nonlinearModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/source/QSAR/nonlinearModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/partialChargeBase.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/partialChargeBase.h:10, from /<>/source/QSAR/partialChargeBase.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/partialChargeDescriptors.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/partialChargeBase.h:10, from /<>/include/BALL/QSAR/partialChargeDescriptors.h:11, from /<>/source/QSAR/partialChargeDescriptors.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/partialChargeProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/include/BALL/QSAR/partialChargeProcessor.h:9, from /<>/source/QSAR/partialChargeProcessor.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/QSARData.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/source/QSAR/QSARData.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/include/BALL/STRUCTURE/molecularSimilarity.h:17, from /<>/source/QSAR/QSARData.C:8: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/source/QSAR/QSARData.C: In member function ‘void BALL::QSAR::QSARData::readSDFile(const char*, std::set&, bool, bool, bool, bool, bool)’: /<>/source/QSAR/QSARData.C:330:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int p=no_internal_descriptors; p>/source/QSAR/QSARData.C:332:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(descriptor_matrix_[p].size()>/source/QSAR/QSARData.C:343:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int act=0; act>/source/QSAR/QSARData.C:345:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(Y_[act].size()>/source/QSAR/QSARData.C: In member function ‘std::vector BALL::QSAR::QSARData::evenSplit(int, int, int) const’: /<>/source/QSAR/QSARData.C:1354:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i%no_test_splits == current_test_split_id) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/source/QSAR/QSARData.C:6: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/unordered/unordered_map.hpp:19, from /usr/include/boost/unordered_map.hpp:17, from /<>/include/BALL/DATATYPE/hashMap.h:24, from /<>/include/BALL/CONCEPT/persistenceManager.h:13, from /<>/include/BALL/CONCEPT/timeStamp.h:21, from /<>/include/BALL/CONCEPT/composite.h:41, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/source/QSAR/QSARData.C:6: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/7/bits/stl_algo.h:61:0, from /usr/include/c++/7/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/unordered/unordered_map.hpp:19, from /usr/include/boost/unordered_map.hpp:17, from /<>/include/BALL/DATATYPE/hashMap.h:24, from /<>/include/BALL/CONCEPT/persistenceManager.h:13, from /<>/include/BALL/CONCEPT/timeStamp.h:21, from /<>/include/BALL/CONCEPT/composite.h:41, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/source/QSAR/QSARData.C:6: /usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/unordered/unordered_map.hpp:19, from /usr/include/boost/unordered_map.hpp:17, from /<>/include/BALL/DATATYPE/hashMap.h:24, from /<>/include/BALL/CONCEPT/persistenceManager.h:13, from /<>/include/BALL/CONCEPT/timeStamp.h:21, from /<>/include/BALL/CONCEPT/composite.h:41, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/source/QSAR/QSARData.C:6: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void BALL::QSAR::QSARData::discretizeY(std::vector)’: /usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/source/QSAR/QSARData.C:6: /usr/include/c++/7/bits/vector.tcc: In member function ‘void BALL::QSAR::QSARData::readSDFile(const char*, std::set&, bool, bool, bool, bool, bool)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/registry.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/factory.h:9, from /<>/include/BALL/QSAR/modelFactory.h:9, from /<>/include/BALL/QSAR/registry.h:5, from /<>/source/QSAR/registry.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/regressionModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/source/QSAR/regressionModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/regressionModel.C: In member function ‘void BALL::QSAR::RegressionModel::show()’: /<>/source/QSAR/regressionModel.C:48:9: warning: variable ‘sterr’ set but not used [-Wunused-but-set-variable] bool sterr = 0; ^~~~~ /<>/source/QSAR/regressionModel.C: In member function ‘virtual void BALL::QSAR::RegressionModel::saveToFile(std::__cxx11::string)’: /<>/source/QSAR/regressionModel.C:129:9: warning: variable ‘sterr’ set but not used [-Wunused-but-set-variable] bool sterr = 0; ^~~~~ /<>/source/QSAR/regressionModel.C: In member function ‘virtual void BALL::QSAR::RegressionModel::saveDescriptorInformationToFile(std::ofstream&)’: /<>/source/QSAR/regressionModel.C:259:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] bool trained = (training_result_.rows() == descriptor_IDs_.size()); ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/regressionModel.C:285:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] bool trained = (training_result_.rows() == descriptor_names_.size()); ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/regressionValidation.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/regressionValidation.h:11, from /<>/source/QSAR/regressionValidation.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/regressionValidation.C: In member function ‘virtual void BALL::QSAR::RegressionValidation::testInputData(bool)’: /<>/source/QSAR/regressionValidation.C:253:8: warning: variable ‘col’ set but not used [-Wunused-but-set-variable] int col = model_->data->descriptor_matrix_.size(); ^~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/ringPerceptionProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /<>/source/QSAR/ringPerceptionProcessor.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/simpleBase.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/simpleBase.h:10, from /<>/source/QSAR/simpleBase.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/source/QSAR/simpleBase.C:10: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/simpleDescriptors.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/simpleBase.h:10, from /<>/include/BALL/QSAR/simpleDescriptors.h:10, from /<>/source/QSAR/simpleDescriptors.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/snBModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MATHS/parsedFunction.h:9, from /<>/include/BALL/QSAR/statistics.h:12, from /<>/include/BALL/QSAR/snBModel.h:14, from /<>/source/QSAR/snBModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/snBModel.C: In member function ‘virtual void BALL::QSAR::SNBModel::saveToFile(std::__cxx11::string)’: /<>/source/QSAR/snBModel.C:235:9: warning: variable ‘centered_y’ set but not used [-Wunused-but-set-variable] bool centered_y = 0; ^~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/statistics.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MATHS/parsedFunction.h:9, from /<>/include/BALL/QSAR/statistics.h:12, from /<>/source/QSAR/statistics.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/statistics.C: In static member function ‘static double BALL::QSAR::Statistics::calculateRankCorrelation(std::vector&, std::vector&)’: /<>/source/QSAR/statistics.C:169:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(Size i=position; i>/source/QSAR/statistics.C:189:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(Size i=position; i>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/surfaceBase.h:10, from /<>/source/QSAR/surfaceBase.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/surfaceDescriptors.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/surfaceBase.h:10, from /<>/include/BALL/QSAR/surfaceDescriptors.h:10, from /<>/source/QSAR/surfaceDescriptors.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/svmModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/svmModel.h:10, from /<>/source/QSAR/svmModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/svrModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/include/BALL/QSAR/svrModel.h:10, from /<>/source/QSAR/svrModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/validation.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/source/QSAR/validation.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/source/QSAR/validation.C:5: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/source/QSAR/validation.C:5: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BALL::QSAR::Validation::setTestLine(int, int, bool)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/allModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/allModel.h:10, from /<>/source/QSAR/allModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/allModel.C: In member function ‘virtual void BALL::QSAR::ALLModel::saveToFile(std::__cxx11::string)’: /<>/source/QSAR/allModel.C:202:9: warning: variable ‘sterr’ set but not used [-Wunused-but-set-variable] bool sterr = 0; ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/featureSelection.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/featureSelection.h:9, from /<>/source/QSAR/featureSelection.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/featureSelection.C: In member function ‘void BALL::QSAR::FeatureSelection::twinScan(int, bool)’: /<>/source/QSAR/featureSelection.C:456:59: warning: variable ‘it’ set but not used [-Wunused-but-set-variable] std::multiset< pair >::iterator it = potential_descriptors.insert(make_pair(1-model_->model_val->getCVRes(), i)); ^~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/gpModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/include/BALL/QSAR/gpModel.h:10, from /<>/source/QSAR/gpModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/gpModel.C: In member function ‘virtual double BALL::QSAR::GPModel::calculateStdErr()’: /<>/source/QSAR/gpModel.C:88:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i = 1; i <= K_t_.cols(); i++) ~~^~~~~~~~~~~~~~ /<>/source/QSAR/gpModel.C:90:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int j = 1; j <= K_t_.cols(); j++) ~~^~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/knnModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/allModel.h:10, from /<>/include/BALL/QSAR/knnModel.h:10, from /<>/source/QSAR/knnModel.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/allModel.h:10, from /<>/include/BALL/QSAR/knnModel.h:10, from /<>/source/QSAR/knnModel.C:1: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/allModel.h:10, from /<>/include/BALL/QSAR/knnModel.h:10, from /<>/source/QSAR/knnModel.C:1: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual std::vector BALL::QSAR::KNNModel::getParameters() const’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kpcrModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/include/BALL/QSAR/kpcrModel.h:10, from /<>/source/QSAR/kpcrModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kplsModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/include/BALL/QSAR/kplsModel.h:10, from /<>/source/QSAR/kplsModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/ldaModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/ldaModel.h:10, from /<>/source/QSAR/ldaModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/ldaModel.C: In member function ‘virtual Eigen::VectorXd BALL::QSAR::LDAModel::predict(const std::vector&, bool)’: /<>/source/QSAR/ldaModel.C:123:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i = 0; i < s.rows(); i++) ~~^~~~~~~~~~ /<>/source/QSAR/ldaModel.C: In member function ‘virtual void BALL::QSAR::LDAModel::saveToFile(std::__cxx11::string)’: /<>/source/QSAR/ldaModel.C:169:9: warning: variable ‘centered_y’ set but not used [-Wunused-but-set-variable] bool centered_y = 0; ^~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/mlrModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/mlrModel.h:10, from /<>/source/QSAR/mlrModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/oplsModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/plsModel.h:10, from /<>/include/BALL/QSAR/oplsModel.h:10, from /<>/source/QSAR/oplsModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/oplsModel.C: In member function ‘virtual void BALL::QSAR::OPLSModel::train()’: /<>/source/QSAR/oplsModel.C:43:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i = 1; i <= u.rows(); i++) ~~^~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/plsModel.h:10, from /<>/include/BALL/QSAR/oplsModel.h:10, from /<>/source/QSAR/oplsModel.C:6: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual std::vector BALL::QSAR::OPLSModel::getParameters() const’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/pcrModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/pcrModel.h:10, from /<>/source/QSAR/pcrModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/pcrModel.C: In static member function ‘static void BALL::QSAR::PCRModel::calculateEigenvectors(const MatrixXd&, double, Eigen::MatrixXd&)’: /<>/source/QSAR/pcrModel.C:46:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (; last_vector < svd.singularValues().rows() && cols < data.rows() && explained_var/complete_var < frac_var ; last_vector++) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/pcrModel.C:46:61: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (; last_vector < svd.singularValues().rows() && cols < data.rows() && explained_var/complete_var < frac_var ; last_vector++) ~~~~~^~~~~~~~~~~~~ /<>/source/QSAR/pcrModel.C:55:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i = 0; i < data.rows(); i++) ~~^~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/plsModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/plsModel.h:10, from /<>/source/QSAR/plsModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/rrModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/mlrModel.h:10, from /<>/include/BALL/QSAR/rrModel.h:10, from /<>/source/QSAR/rrModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/fitModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/fitModel.h:16, from /<>/source/QSAR/fitModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/fitModel.C: In member function ‘virtual Eigen::VectorXd BALL::QSAR::FitModel::predict(const std::vector&, bool)’: /<>/source/QSAR/fitModel.C:47:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int j = 0; j < v.rows(); j++) ~~^~~~~~~~~~ /<>/source/QSAR/fitModel.C: In member function ‘virtual void BALL::QSAR::FitModel::train()’: /<>/source/QSAR/fitModel.C:162:9: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] int status; ^~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/baseFunction.o [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/diffScoringFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /<>/source/SCORING/COMMON/diffScoringFunction.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /<>/source/SCORING/COMMON/diffScoringFunction.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:10:0, from /<>/source/SCORING/COMMON/diffScoringFunction.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/COMMON/diffScoringFunction.C:7:0: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/diffGridBasedScoring.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/source/SCORING/COMMON/diffGridBasedScoring.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/source/SCORING/COMMON/diffGridBasedScoring.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:10:0, from /<>/source/SCORING/COMMON/diffGridBasedScoring.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/COMMON/diffGridBasedScoring.C:7:0: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/gridBasedScoring.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/source/SCORING/COMMON/gridBasedScoring.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/source/SCORING/COMMON/gridBasedScoring.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/source/SCORING/COMMON/gridBasedScoring.C:6: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/source/SCORING/COMMON/gridBasedScoring.C:6: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BALL::GridBasedScoring::GridSetsResult::setup(BALL::Size)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/linearBaseFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/source/SCORING/COMMON/linearBaseFunction.C:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/fermiBaseFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/source/SCORING/COMMON/fermiBaseFunction.C:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/rescorer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/molFileFactory.h:9, from /<>/source/SCORING/COMMON/rescorer.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/dockResultFile.h:11:0, from /<>/source/SCORING/COMMON/rescorer.C:2: /<>/include/BALL/DOCKING/COMMON/result.h:128:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getInputConformer(Ligand* lig) throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/DOCKING/COMMON/result.h:134:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getFirstOutputConformation(Ligand* lig) throw(Exception::GeneralException); ^~~~~ In file included from /<>/source/SCORING/COMMON/rescorer.C:2:0: /<>/include/BALL/FORMAT/dockResultFile.h:43:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Receptor* readReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:53:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Ligand* readLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:73:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector readResults() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:88:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Molecule* read() throw (Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:89:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool write(const Molecule& mol) throw (File::CannotWrite); ^~~~~ In file included from /<>/source/SCORING/COMMON/rescorer.C:2:0: /<>/include/BALL/FORMAT/dockResultFile.h:203:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptors_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:204:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptor_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:205:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:206:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:207:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readPDBAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:209:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResults_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:210:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:211:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readSubResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:212:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readEntry() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:224:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigands() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:225:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigand_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:226:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:227:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformations(FlexibleMolecule* target) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:228:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformation(Conformation* conformation) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:229:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readCoordinates() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:230:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibility() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:231:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibilities() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:232:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFullFlexResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:233:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readRotamericResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:234:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtoms() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:235:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:236:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBonds() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:237:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBond() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:240:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:241:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:242:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:243:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:244:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildResidue() throw(Exception::ParseError); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/rescorer.h:14, from /<>/source/SCORING/COMMON/rescorer.C:3: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:18, from /<>/source/SCORING/COMMON/rescorer.C:4: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:10:0, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /<>/source/SCORING/COMMON/rescorer.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:10:0, from /<>/source/SCORING/COMMON/rescorer.C:5: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23:0, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/SCORING/COMMON/rescorer.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/SCORING/COMMON/rescorer.C:5: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9:0, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/SCORING/COMMON/rescorer.C:5: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25:0, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /<>/source/SCORING/COMMON/rescorer.C:8: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10:0, from /<>/source/SCORING/COMMON/rescorer.C:8: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/SCORING/COMMON/rescorer.C: In copy constructor ‘BALL::Rescorer::Rescorer(const BALL::Rescorer&)’: /<>/source/SCORING/COMMON/rescorer.C:28:37: warning: unused parameter ‘rescorer’ [-Wunused-parameter] Rescorer::Rescorer(const Rescorer& rescorer) ^~~~~~~~ /<>/source/SCORING/COMMON/rescorer.C: In member function ‘BALL::Rescorer& BALL::Rescorer::operator=(const BALL::Rescorer&)’: /<>/source/SCORING/COMMON/rescorer.C:32:50: warning: unused parameter ‘rescorer’ [-Wunused-parameter] Rescorer& Rescorer::operator = (const Rescorer& rescorer) ^~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoreGridSet.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/include/BALL/SCORING/COMMON/scoreGridSet.h:9, from /<>/source/SCORING/COMMON/scoreGridSet.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/scoreGridSet.h:10, from /<>/source/SCORING/COMMON/scoreGridSet.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13:0, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/scoreGridSet.h:10, from /<>/source/SCORING/COMMON/scoreGridSet.C:6: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:29: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/source/SCORING/COMMON/scoreGridSet.C:797:1: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringComponent.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/source/SCORING/COMMON/scoringComponent.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/source/SCORING/COMMON/scoringComponent.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/DOCKING/COMMON/sideChainOptimizer.h:9, from /<>/source/SCORING/COMMON/scoringFunction.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/DOCKING/COMMON/sideChainOptimizer.h:9, from /<>/source/SCORING/COMMON/scoringFunction.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13:0, from /<>/include/BALL/DOCKING/COMMON/sideChainOptimizer.h:9, from /<>/source/SCORING/COMMON/scoringFunction.C:5: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:29: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/source/SCORING/COMMON/scoringFunction.C:2103:1: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringOptimizer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /<>/source/SCORING/COMMON/scoringOptimizer.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /<>/source/SCORING/COMMON/scoringOptimizer.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:10:0, from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /<>/source/SCORING/COMMON/scoringOptimizer.C:13: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:10:0, from /<>/source/SCORING/COMMON/scoringOptimizer.C:13: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25:0, from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /<>/source/SCORING/COMMON/scoringOptimizer.C:14: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10:0, from /<>/source/SCORING/COMMON/scoringOptimizer.C:14: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/aromaticRingStacking.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/aromaticityProcessor.h:10, from /<>/include/BALL/SCORING/COMPONENTS/aromaticRingStacking.h:9, from /<>/source/SCORING/COMPONENTS/aromaticRingStacking.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/aromaticRingStacking.h:11, from /<>/source/SCORING/COMPONENTS/aromaticRingStacking.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/advElectrostatic.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:11, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /<>/source/SCORING/COMPONENTS/advElectrostatic.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /<>/source/SCORING/COMPONENTS/advElectrostatic.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23:0, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /<>/source/SCORING/COMPONENTS/advElectrostatic.C:6: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /<>/source/SCORING/COMPONENTS/advElectrostatic.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /<>/source/SCORING/COMPONENTS/advElectrostatic.C:6: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9:0, from /<>/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /<>/source/SCORING/COMPONENTS/advElectrostatic.C:6: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fragmentationalSolvation.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /<>/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /<>/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13:0, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /<>/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:29: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/source/SCORING/COMPONENTS/fragmentationalSolvation.C:204:1: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/burialDepth.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/burialDepth.h:9, from /<>/source/SCORING/COMPONENTS/burialDepth.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/burialDepth.h:9, from /<>/source/SCORING/COMPONENTS/burialDepth.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/buriedPolar.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/buriedPolar.h:9, from /<>/source/SCORING/COMPONENTS/buriedPolar.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/buriedPolar.h:9, from /<>/source/SCORING/COMPONENTS/buriedPolar.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPI.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/support.h:12, from /<>/source/SCORING/COMPONENTS/CHPI.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/source/SCORING/COMPONENTS/CHPI.C:9: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/CHPI.C:9:0: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/CHPI.h:9, from /<>/source/SCORING/COMPONENTS/CHPI.C:10: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPISlick.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/support.h:12, from /<>/source/SCORING/COMPONENTS/CHPISlick.C:8: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/source/SCORING/COMPONENTS/CHPISlick.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/CHPISlick.C:8:0: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/CHPISlick.h:7, from /<>/source/SCORING/COMPONENTS/CHPISlick.C:9: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/electrostatic.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:11, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/source/SCORING/COMPONENTS/electrostatic.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/source/SCORING/COMPONENTS/electrostatic.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23:0, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/source/SCORING/COMPONENTS/electrostatic.C:6: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/source/SCORING/COMPONENTS/electrostatic.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/source/SCORING/COMPONENTS/electrostatic.C:6: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9:0, from /<>/source/SCORING/COMPONENTS/electrostatic.C:6: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fresnoTypes.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /<>/source/SCORING/COMPONENTS/fresnoTypes.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /<>/source/SCORING/COMPONENTS/fresnoTypes.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/SCORING/COMPONENTS/fresnoTypes.C:7: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBond.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/hydrogenBond.h:9, from /<>/source/SCORING/COMPONENTS/hydrogenBond.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/hydrogenBond.h:9, from /<>/source/SCORING/COMPONENTS/hydrogenBond.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/source/SCORING/COMPONENTS/hydrogenBond.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/hydrogenBond.C:8:0: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBondSlick.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:6:0: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C: In member function ‘virtual void BALL::HydrogenBondSlick::update(const std::vector >&)’: /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:219:73: warning: unused parameter ‘pair_vector’ [-Wunused-parameter] void HydrogenBondSlick::update(const vector >& pair_vector) ^~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/lipophilic.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/lipophilic.h:9, from /<>/source/SCORING/COMPONENTS/lipophilic.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/lipophilic.h:9, from /<>/source/SCORING/COMPONENTS/lipophilic.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarity.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /<>/source/SCORING/COMPONENTS/polarity.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /<>/source/SCORING/COMPONENTS/polarity.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ /<>/source/SCORING/COMPONENTS/polarity.C: In member function ‘virtual void BALL::Polarity::update(const std::vector >&)’: /<>/source/SCORING/COMPONENTS/polarity.C:101:68: warning: unused parameter ‘pair_vector’ [-Wunused-parameter] void Polarity::update(const std::vector >& pair_vector) ^~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarity.C: In member function ‘virtual double BALL::Polarity::updateScore()’: /<>/source/SCORING/COMPONENTS/polarity.C:189:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (; i <= pos_x+radius && i < x_size; i++) ~~^~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarity.C:191:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int j = j0; j <= pos_y+radius && j < y_size; j++) ~~^~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarity.C:193:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int k = k0; k <= pos_z+radius && k < z_size; k++) ~~^~~~~~~~~~~~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /<>/source/SCORING/COMPONENTS/polarity.C:6: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::Atom*; BALL::Position = unsigned int]’ /<>/source/SCORING/COMPONENTS/polarity.C:179:49: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PB.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/PB.h:6, from /<>/source/SCORING/COMPONENTS/PB.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/PB.h:6, from /<>/source/SCORING/COMPONENTS/PB.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PLP.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:9:0, from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:10:0, from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:11:0, from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:12:0, from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/PLP.C:9:0: /<>/include/BALL/SCORING/COMPONENTS/PLP.h:106:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/SCORING/COMPONENTS/PLP.C:13: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/source/SCORING/COMPONENTS/PLP.C:337:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/rotationalEntropy.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/rotationalEntropy.h:9, from /<>/source/SCORING/COMPONENTS/rotationalEntropy.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/rotationalEntropy.h:9, from /<>/source/SCORING/COMPONENTS/rotationalEntropy.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/solvation.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/source/SCORING/COMPONENTS/solvation.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/source/SCORING/COMPONENTS/solvation.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /usr/include/c++/7/set:60:0, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:8, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/source/SCORING/COMPONENTS/solvation.C:6: /usr/include/c++/7/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = BALL::String; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from /usr/include/boost/detail/container_fwd.hpp:94, from /usr/include/boost/functional/hash/extensions.hpp:22, from /usr/include/boost/functional/hash/hash.hpp:594, from /usr/include/boost/functional/hash.hpp:6, from /usr/include/boost/unordered/unordered_map.hpp:18, from /usr/include/boost/unordered_map.hpp:17, from /<>/include/BALL/DATATYPE/hashMap.h:24, from /<>/include/BALL/CONCEPT/persistenceManager.h:13, from /<>/include/BALL/CONCEPT/timeStamp.h:21, from /<>/include/BALL/CONCEPT/composite.h:41, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/source/SCORING/COMPONENTS/solvation.C:6: /usr/include/c++/7/bits/stl_map.h: In constructor ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’: /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/nonpolarSolvation.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:6, from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:6, from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:35:0, from /<>/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:10, from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /<>/include/BALL/SOLVATION/solventDescriptor.h:144:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/SOLVATION/solventDescriptor.h:149:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:10:0, from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /<>/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:258:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:7: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:9:0: /<>/include/BALL/STRUCTURE/defaultProcessors.h:74:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:109:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:157:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:10:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C: In member function ‘virtual void BALL::NonpolarSolvation::update(const std::vector >&)’: /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:376:73: warning: unused parameter ‘pair_vector’ [-Wunused-parameter] void NonpolarSolvation::update(const vector >& pair_vector) ^~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarSolvation.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /<>/source/SCORING/COMPONENTS/polarSolvation.C:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /<>/source/SCORING/COMPONENTS/polarSolvation.C:3: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/polarSolvation.h:9:0, from /<>/source/SCORING/COMPONENTS/polarSolvation.C:3: /<>/include/BALL/SOLVATION/generalizedBornCase.h:121:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:131:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:166:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/SCORING/COMPONENTS/polarSolvation.C:5: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/polarSolvation.C:8:0: /<>/include/BALL/STRUCTURE/defaultProcessors.h:74:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:109:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:157:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/polarSolvation.C:9:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C: In member function ‘virtual void BALL::PolarSolvation::update(const std::vector >&)’: /<>/source/SCORING/COMPONENTS/polarSolvation.C:261:70: warning: unused parameter ‘pair_vector’ [-Wunused-parameter] void PolarSolvation::update(const vector >& pair_vector) ^~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C: In member function ‘virtual bool BALL::PolarSolvation::setup()’: /<>/source/SCORING/COMPONENTS/polarSolvation.C:191:6: warning: this statement may fall through [-Wimplicit-fallthrough=] if (verbosity_ > 1) ^~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:198:5: note: here case CALCULATION__FULL_SLICK: ^~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:199:6: warning: this statement may fall through [-Wimplicit-fallthrough=] if (verbosity_ > 1) ^~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:206:5: note: here case CALCULATION__FULL_CYCLE: ^~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:207:6: warning: this statement may fall through [-Wimplicit-fallthrough=] if (verbosity_ > 1) ^~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:214:5: note: here case CALCULATION__FULL_CYCLE_FOCUSED: ^~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:215:6: warning: this statement may fall through [-Wimplicit-fallthrough=] if (verbosity_ > 1) ^~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:222:5: note: here case CALCULATION__COULOMB: ^~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:223:6: warning: this statement may fall through [-Wimplicit-fallthrough=] if (verbosity_ > 1) ^~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:230:5: note: here case CALCULATION__EEF1: ^~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaals.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:11, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /<>/source/SCORING/COMPONENTS/vanDerWaals.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /<>/source/SCORING/COMPONENTS/vanDerWaals.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23:0, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /<>/source/SCORING/COMPONENTS/vanDerWaals.C:6: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /<>/source/SCORING/COMPONENTS/vanDerWaals.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /<>/source/SCORING/COMPONENTS/vanDerWaals.C:6: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9:0, from /<>/source/SCORING/COMPONENTS/vanDerWaals.C:6: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaalsSlick.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:7, from /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23:0, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8:0, from /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C: In member function ‘virtual void BALL::VanDerWaalsSlick::update(const std::vector >&)’: /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:646:72: warning: unused parameter ‘pair_vector’ [-Wunused-parameter] void VanDerWaalsSlick::update(const vector >& pair_vector) ^~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring.C:1: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:10:0, from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring.C:2: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:10:0, from /<>/source/SCORING/FUNCTIONS/rescoring.C:2: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring.C:1: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring.C:1: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BALL::Rescoring::addScoreContributions(BALL::Molecule*)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring1D.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring1D.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring1D.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring1D.C:6: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring1D.C:6: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BALL::Rescoring1D::generateScoreContributions_(std::vector >*, std::vector*)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring3D.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring3D.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring3D.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ /<>/source/SCORING/FUNCTIONS/rescoring3D.C: In member function ‘std::__cxx11::list*> > BALL::Rescoring3D::generateRegularData3DGrids()’: /<>/source/SCORING/FUNCTIONS/rescoring3D.C:112:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (sizeX_*sizeY_*sizeZ_ < coefficients->rows()) ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13:0, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring3D.C:6: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:29: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/source/SCORING/FUNCTIONS/rescoring3D.C:175:1: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring3D.C:6: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring3D.C:6: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void BALL::Rescoring3D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void BALL::Rescoring3D::generateScoreContributions_(BALL::Molecule*, std::vector >*, std::vector*)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring4D.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring4D.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring4D.C:1: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring4D.C:1: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring4D.C:1: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void BALL::Rescoring4D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/amberEvaluation.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9:0, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /<>/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /<>/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:12:0, from /<>/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /<>/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13:0, from /<>/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:65:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:17:0, from /<>/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/energeticEvaluation.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9:0, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/energeticEvaluation.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/energeticEvaluation.C:1: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/forceFieldEvaluation.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9:0, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:12:0, from /<>/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1:0: /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:65:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:67:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedMM.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:10:0, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:10:0, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23:0, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9:0, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/MMScoring.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /<>/source/SCORING/FUNCTIONS/MMScoring.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /<>/source/SCORING/FUNCTIONS/MMScoring.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:10:0, from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /<>/source/SCORING/FUNCTIONS/MMScoring.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:10:0, from /<>/source/SCORING/FUNCTIONS/MMScoring.C:6: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/MMScoring.C:7:0: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/source/SCORING/FUNCTIONS/MMScoring.C:8: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/MMScoring.C:8:0: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedPLP.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:10:0, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25:0, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:6: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10:0, from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:6: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:7:0: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:11:0, from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:8: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:8:0: /<>/include/BALL/SCORING/COMPONENTS/PLP.h:106:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PLPScoring.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:17:0, from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25:0, from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:6: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10:0, from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:6: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:7:0: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:11:0, from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:8: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:8:0: /<>/include/BALL/SCORING/COMPONENTS/PLP.h:106:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/randomEvaluation.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9:0, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/randomEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/randomEvaluation.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/SCORING/FUNCTIONS/randomEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/randomEvaluation.C:1: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PBScoring.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/PBScoring.h:9, from /<>/source/SCORING/FUNCTIONS/PBScoring.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/FUNCTIONS/PBScoring.h:9, from /<>/source/SCORING/FUNCTIONS/PBScoring.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickEnergy.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SCORING/FUNCTIONS/slickEnergy.h:7, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/FUNCTIONS/slickEnergy.h:11, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23:0, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:9: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:9: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:9: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8:0, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:9: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:35:0, from /<>/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:10, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:10: /<>/include/BALL/SOLVATION/solventDescriptor.h:144:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/SOLVATION/solventDescriptor.h:149:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:10:0, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:10: /<>/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:258:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/polarSolvation.h:9:0, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:11: /<>/include/BALL/SOLVATION/generalizedBornCase.h:121:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:131:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:166:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:15: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickScore.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SCORING/FUNCTIONS/slickScore.h:7, from /<>/source/SCORING/FUNCTIONS/slickScore.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/FUNCTIONS/slickScore.h:11, from /<>/source/SCORING/FUNCTIONS/slickScore.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23:0, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickScore.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20:0, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickScore.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickScore.C:7: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8:0, from /<>/source/SCORING/FUNCTIONS/slickScore.C:7: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/polarSolvation.h:9:0, from /<>/source/SCORING/FUNCTIONS/slickScore.C:9: /<>/include/BALL/SOLVATION/generalizedBornCase.h:121:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:131:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:166:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/SCORING/FUNCTIONS/slickScore.C:14: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/claverieParameter.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/include/BALL/FORMAT/parameters.h:12, from /<>/include/BALL/SOLVATION/claverieParameter.h:11, from /<>/source/SOLVATION/claverieParameter.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/electrostaticPotentialCalculator.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:11, from /<>/source/SOLVATION/electrostaticPotentialCalculator.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:19:0, from /<>/source/SOLVATION/electrostaticPotentialCalculator.C:6: /<>/include/BALL/STRUCTURE/defaultProcessors.h:74:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:109:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:157:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/SOLVATION/electrostaticPotentialCalculator.C:6:0: /<>/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:88:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ /<>/source/SOLVATION/electrostaticPotentialCalculator.C:39:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer) ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/generalizedBornCase.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/generalizedBornCase.h:11, from /<>/source/SOLVATION/generalizedBornCase.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SOLVATION/generalizedBornCase.C:7:0: /<>/include/BALL/SOLVATION/generalizedBornCase.h:121:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:131:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:166:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/source/SOLVATION/generalizedBornCase.C:56:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/SOLVATION/generalizedBornCase.C:128:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/SOLVATION/generalizedBornCase.C:451:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/molecularSurfaceGrid.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/molecularSurfaceGrid.h:11, from /<>/source/SOLVATION/molecularSurfaceGrid.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/ooiEnergy.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/ooiEnergy.h:11, from /<>/source/SOLVATION/ooiEnergy.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SOLVATION/ooiEnergy.C:13:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/PCMCavFreeEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/PCMCavFreeEnergyProcessor.h:11, from /<>/source/SOLVATION/PCMCavFreeEnergyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pierottiCavFreeEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/pierottiCavFreeEnergyProcessor.h:11, from /<>/source/SOLVATION/pierottiCavFreeEnergyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pair6_12InteractionEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SYSTEM/path.h:22, from /<>/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:35:0, from /<>/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:14: /<>/include/BALL/SOLVATION/solventDescriptor.h:144:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/SOLVATION/solventDescriptor.h:149:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:14:0: /<>/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:258:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:177:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pair6_12RDFIntegrator.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/MATHS/common.h:33, from /<>/source/SOLVATION/pair6_12RDFIntegrator.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pairExpInteractionEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/source/SOLVATION/pairExpInteractionEnergyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SOLVATION/pairExpInteractionEnergyProcessor.h:39:0, from /<>/source/SOLVATION/pairExpInteractionEnergyProcessor.C:12: /<>/include/BALL/SOLVATION/solventDescriptor.h:144:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/SOLVATION/solventDescriptor.h:149:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pairExpRDFIntegrator.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/pairExpRDFIntegrator.h:11, from /<>/source/SOLVATION/pairExpRDFIntegrator.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/poissonBoltzmann.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/poissonBoltzmann.h:13, from /<>/source/SOLVATION/poissonBoltzmann.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SOLVATION/poissonBoltzmann.C:12:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/source/SOLVATION/poissonBoltzmann.C:13:0: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::TVector4; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::TVector4; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::TVector4; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::TVector4]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::TVector4; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator >, BALL::HashGridBox3 >, unsigned int, BALL::HashGridBox3 >::BoxIteratorTraits>]’ /<>/source/SOLVATION/poissonBoltzmann.C:571:35: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/reissCavFreeEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/reissCavFreeEnergyProcessor.h:11, from /<>/source/SOLVATION/reissCavFreeEnergyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/solventDescriptor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/solventDescriptor.h:11, from /<>/source/SOLVATION/solventDescriptor.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SOLVATION/solventDescriptor.C:7:0: /<>/include/BALL/SOLVATION/solventDescriptor.h:144:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/SOLVATION/solventDescriptor.h:149:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/source/SOLVATION/solventDescriptor.C:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/SOLVATION/solventDescriptor.C:127:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/solventParameter.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/solventDescriptor.h:11, from /<>/include/BALL/SOLVATION/solventParameter.h:11, from /<>/source/SOLVATION/solventParameter.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SOLVATION/solventParameter.h:11:0, from /<>/source/SOLVATION/solventParameter.C:7: /<>/include/BALL/SOLVATION/solventDescriptor.h:144:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/SOLVATION/solventDescriptor.h:149:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/uhligCavFreeEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/uhligCavFreeEnergyProcessor.h:11, from /<>/source/SOLVATION/uhligCavFreeEnergyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9:0, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /<>/include/BALL/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.h:5, from /<>/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C:2:0: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignment.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9:0, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:9, from /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:2:0: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9:0, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9:0, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /<>/include/BALL/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.h:5, from /<>/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C:2:0: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/MATHS/common.h:33, from /<>/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:9, from /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/molecularGraph.h:16:0, from /<>/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:25, from /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h: In function ‘BALL::GRAPH::UndoEliminateOperation BALL::GRAPH::eliminateVertexUndoable(const typename BALL::GRAPH::GraphTraits::VertexType&, UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:184:129: warning: typedef ‘EdgeProperties’ locally defined but not used [-Wunused-local-typedefs] typedef typename boost::property_traits::type>::value_type EdgeProperties; ^~~~~~~~~~~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/treeWidth.h:509:0, from /<>/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:33, from /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /<>/include/BALL/DATATYPE/GRAPH/treeWidth.iC: In constructor ‘BALL::TreeWidth::TreeWidth(const UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/treeWidth.iC:49:76: warning: typedef ‘FillInHeuristic’ locally defined but not used [-Wunused-local-typedefs] typedef typename TreeWidthImplementation::FillInHeuristic FillInHeuristic; ^~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:2:0: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h: At global scope: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘virtual bool BALL::FPTBondOrderStrategy::readOptions(const BALL::Options&)’: /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:30:56: warning: unused parameter ‘options’ [-Wunused-parameter] bool FPTBondOrderStrategy::readOptions(const Options& options) ^~~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘virtual void BALL::FPTBondOrderStrategy::init()’: /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:69:13: warning: unused variable ‘result’ [-Wunused-variable] Penalty result = bond_assignments[i]->compute(); ^~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘BALL::FPTBondOrderStrategy::DPTable_* BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_::operator()(BALL::FPTBondOrderStrategy::TreeDecompositionBag&, std::vector::const_iterator, std::vector::const_iterator)’: /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:438:5: warning: this statement may fall through [-Wimplicit-fallthrough=] if (first == end || second == end || *second == NULL) ^~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:442:4: note: here case TreeWidth::INTRODUCE_BAG: ^~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9:0, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /<>/include/BALL/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.h:5, from /<>/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C:2:0: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /<>/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:2:0: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/addHydrogenProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/addHydrogenProcessor.h:9, from /<>/source/STRUCTURE/addHydrogenProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/addHydrogenProcessor.C:12:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/analyticalSES.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/analyticalSES.h:9, from /<>/source/STRUCTURE/analyticalSES.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/assignBondOrderProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/kernel.h:12, from /<>/source/STRUCTURE/assignBondOrderProcessor.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/assignBondOrderProcessor.C:10:0: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ In file included from /<>/source/STRUCTURE/assignBondOrderProcessor.C:19:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/molecularGraph.h:16:0, from /<>/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:25, from /<>/source/STRUCTURE/assignBondOrderProcessor.C:30: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h: In function ‘BALL::GRAPH::UndoEliminateOperation BALL::GRAPH::eliminateVertexUndoable(const typename BALL::GRAPH::GraphTraits::VertexType&, UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:184:129: warning: typedef ‘EdgeProperties’ locally defined but not used [-Wunused-local-typedefs] typedef typename boost::property_traits::type>::value_type EdgeProperties; ^~~~~~~~~~~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/treeWidth.h:509:0, from /<>/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:33, from /<>/source/STRUCTURE/assignBondOrderProcessor.C:30: /<>/include/BALL/DATATYPE/GRAPH/treeWidth.iC: In constructor ‘BALL::TreeWidth::TreeWidth(const UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/treeWidth.iC:49:76: warning: typedef ‘FillInHeuristic’ locally defined but not used [-Wunused-local-typedefs] typedef typename TreeWidthImplementation::FillInHeuristic FillInHeuristic; ^~~~~~~~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::AssignBondOrderProcessor::operator()(BALL::AtomContainer&)’: /<>/source/STRUCTURE/assignBondOrderProcessor.C:594:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] && ((getNumberOfComputedSolutions() < max_number_of_solutions_) || (!max_number_of_solutions_)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: At global scope: /<>/source/STRUCTURE/assignBondOrderProcessor.C:630:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound()) ^~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: In member function ‘bool BALL::AssignBondOrderProcessor::precomputeBondLengthPenalties_()’: /<>/source/STRUCTURE/assignBondOrderProcessor.C:800:10: warning: variable ‘min_order’ set but not used [-Wunused-but-set-variable] Size min_order = 0; ^~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: At global scope: /<>/source/STRUCTURE/assignBondOrderProcessor.C:1300:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/atomBijection.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/atomBijection.h:9, from /<>/source/STRUCTURE/atomBijection.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/atomBijection.C:7:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/atomTyper.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/hashSet.h:9, from /<>/include/BALL/STRUCTURE/atomTyper.h:9, from /<>/source/STRUCTURE/atomTyper.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/source/STRUCTURE/atomTyper.C:13: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/binaryFingerprintMethods.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/binaryFingerprintMethods.h:9, from /<>/source/STRUCTURE/binaryFingerprintMethods.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/STRUCTURE/binaryFingerprintMethods.C: In member function ‘void BALL::BinaryFingerprintMethods::setBlockSize(short unsigned int)’: /<>/source/STRUCTURE/binaryFingerprintMethods.C:617:18: warning: ‘template class BALL::Limits’ is deprecated [-Wdeprecated-declarations] if (blocksize > Limits::max()) ^~~~~~ In file included from /<>/source/STRUCTURE/binaryFingerprintMethods.C:7:0: /<>/include/BALL/COMMON/limits.h:47:36: note: declared here class BALL_EXPORT BALL_DEPRECATED Limits ^~~~~~ /<>/source/STRUCTURE/binaryFingerprintMethods.C:619:16: warning: ‘template class BALL::Limits’ is deprecated [-Wdeprecated-declarations] blocksize_ = Limits::max() - 1; ^~~~~~ In file included from /<>/source/STRUCTURE/binaryFingerprintMethods.C:7:0: /<>/include/BALL/COMMON/limits.h:47:36: note: declared here class BALL_EXPORT BALL_DEPRECATED Limits ^~~~~~ /<>/source/STRUCTURE/binaryFingerprintMethods.C: In member function ‘BALL::BinaryFingerprintMethods::InvertedIndex* BALL::BinaryFingerprintMethods::createInvertedIndex(const std::vector*, unsigned int> >&)’: /<>/source/STRUCTURE/binaryFingerprintMethods.C:640:47: warning: ‘template class BALL::Limits’ is deprecated [-Wdeprecated-declarations] vector > feature_list(Limits::max() + 1, vector()); ^~~~~~ In file included from /<>/source/STRUCTURE/binaryFingerprintMethods.C:7:0: /<>/include/BALL/COMMON/limits.h:47:36: note: declared here class BALL_EXPORT BALL_DEPRECATED Limits ^~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/bindingPocketProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/bindingPocketProcessor.h:5, from /<>/source/STRUCTURE/bindingPocketProcessor.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/bindingPocketProcessor.C:4:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/bindingPocketProcessor.h:21:0, from /<>/source/STRUCTURE/bindingPocketProcessor.C:1: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::BindingPocketProcessor::Sphere_; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::BindingPocketProcessor::Sphere_; BALL::Position = unsigned int]’ /<>/source/STRUCTURE/bindingPocketProcessor.C:398:50: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/bindingPocketProcessor.h:5, from /<>/source/STRUCTURE/bindingPocketProcessor.C:1: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector, double> >::iterator {aka __gnu_cxx::__normal_iterator, double>*, std::vector, double> > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual bool BALL::BindingPocketProcessor::finish()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/buildBondsProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/buildBondsProcessor.h:9, from /<>/source/STRUCTURE/buildBondsProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/buildBondsProcessor.C:5:0: /<>/include/BALL/STRUCTURE/buildBondsProcessor.h:105:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] BuildBondsProcessor(const String& file_name) throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/buildBondsProcessor.h:129:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setBondLengths(const String& file_name) throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/buildBondsProcessor.h:169:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void readBondLengthsFromFile_(const String& file_name = "") throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/STRUCTURE/buildBondsProcessor.C:11:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/source/STRUCTURE/buildBondsProcessor.C:50:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] BuildBondsProcessor::BuildBondsProcessor(const String& file_name) throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/buildBondsProcessor.C:434:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void BuildBondsProcessor::setBondLengths(const String& file_name) throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/buildBondsProcessor.C:443:78: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void BuildBondsProcessor::readBondLengthsFromFile_(const String& file_name) throw(Exception::FileNotFound) ^~~~~ In file included from /<>/source/STRUCTURE/buildBondsProcessor.C:8:0: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::Atom*; BALL::Position = unsigned int]’ /<>/source/STRUCTURE/buildBondsProcessor.C:165:36: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/connectedComponentsProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/connectedComponentsProcessor.h:5, from /<>/source/STRUCTURE/connectedComponentsProcessor.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/connolly.o In file included from /<>/source/STRUCTURE/connolly.C:103:0: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/defaultProcessors.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/defaultProcessors.h:9, from /<>/source/STRUCTURE/defaultProcessors.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/defaultProcessors.C:5:0: /<>/include/BALL/STRUCTURE/defaultProcessors.h:74:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:109:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:157:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/source/STRUCTURE/defaultProcessors.C:39:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/defaultProcessors.C:148:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/defaultProcessors.C:198:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/defaultProcessors.C:223:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/disulfidBondProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/disulfidBondProcessor.h:5, from /<>/source/STRUCTURE/disulfidBondProcessor.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/disulfidBondProcessor.C:10:0: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/DNAMutator.o In file included from /<>/source/STRUCTURE/DNAMutator.C:8:0: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/STRUCTURE/DNAMutator.C:16: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ In file included from /<>/source/STRUCTURE/DNAMutator.C:21:0: /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:50:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates); ^~~~~ /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:53:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates); ^~~~~ /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:56:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates); ^~~~~ In file included from /<>/source/STRUCTURE/DNAMutator.C:22:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/source/STRUCTURE/DNAMutator.C:24:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/STRUCTURE/DNAMutator.C:25:0: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/fragmentDB.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/STRUCTURE/fragmentDB.h:9, from /<>/source/STRUCTURE/fragmentDB.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/geometricProperties.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/geometricProperties.h:9, from /<>/source/STRUCTURE/geometricProperties.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/geometricProperties.C:5:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/source/STRUCTURE/geometricProperties.C:293:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition) ^~~~~ /<>/source/STRUCTURE/geometricProperties.C:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition) ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/geometricTransformations.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/geometricTransformations.h:9, from /<>/source/STRUCTURE/geometricTransformations.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/graphEdge.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/source/STRUCTURE/graphEdge.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/graphEdge.C:5:0: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/graphFace.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphFace.h:9, from /<>/source/STRUCTURE/graphFace.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/graphFace.C:5:0: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/graphVertex.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphVertex.h:9, from /<>/source/STRUCTURE/graphVertex.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/HBondProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/HBondProcessor.h:9, from /<>/source/STRUCTURE/HBondProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/HBondProcessor.C:10:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/source/STRUCTURE/HBondProcessor.C:6:0: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::HBondProcessor::ResidueData*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::HBondProcessor::ResidueData*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::HBondProcessor::ResidueData*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::HBondProcessor::ResidueData*]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::HBondProcessor::ResidueData*; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/HBondProcessor.C:350:68: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/hybridisationProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/hybridisationProcessor.h:9, from /<>/source/STRUCTURE/hybridisationProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/hybridisationProcessor.C:6:0: /<>/include/BALL/STRUCTURE/hybridisationProcessor.h:119:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] HybridisationProcessor(const String& smarts_file_name, const String& ff_file_name) throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/hybridisationProcessor.h:143:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setAtomTypeSmarts(const String& file_name) throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/hybridisationProcessor.h:192:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomTypeSmartsFromFile_(const String& file_name = "") throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/hybridisationProcessor.h:205:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAndInitBondAnglesFromFile_(const String& file_name = "") throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/STRUCTURE/hybridisationProcessor.C:13:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C:66:117: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] HybridisationProcessor::HybridisationProcessor(const String& smarts_file_name, const String& gaff_angle_file_name) throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C:527:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C:534:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C:626:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/kekulizer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/kekulizer.h:9, from /<>/source/STRUCTURE/kekulizer.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/source/STRUCTURE/kekulizer.C:13: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/molecularSimilarity.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/molecularSimilarity.h:14, from /<>/source/STRUCTURE/molecularSimilarity.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/include/BALL/STRUCTURE/molecularSimilarity.h:17, from /<>/source/STRUCTURE/molecularSimilarity.C:6: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/mutator.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/STRUCTURE/fragmentDB.h:9, from /<>/source/STRUCTURE/mutator.C:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/nucleotideMapping.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9:0, from /<>/include/BALL/STRUCTURE/nucleotideMapping.h:6, from /<>/source/STRUCTURE/nucleotideMapping.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/numericalSAS.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/numericalSAS.h:9, from /<>/source/STRUCTURE/numericalSAS.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangle.h:9:0, from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:9, from /<>/source/STRUCTURE/numericalSAS.C:6: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangle.h:13:0, from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:9, from /<>/source/STRUCTURE/numericalSAS.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:9:0, from /<>/source/STRUCTURE/numericalSAS.C:6: /<>/include/BALL/STRUCTURE/triangle.h:137:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/triangle.h:146:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:17:0, from /<>/source/STRUCTURE/numericalSAS.C:6: /<>/include/BALL/STRUCTURE/trianglePoint.h:148:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/numericalSAS.C:7:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/source/STRUCTURE/numericalSAS.C:10:0: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = const BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = const BALL::Atom*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = const BALL::Atom*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = const BALL::Atom*]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = const BALL::Atom*; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/numericalSAS.C:150:73: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/peptides.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/peptides.h:9, from /<>/source/STRUCTURE/peptides.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/peptides.C:5:0: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/source/STRUCTURE/peptides.C:143:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()) ^~~~~ /<>/source/STRUCTURE/peptides.C:210:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()) ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/peptideBuilder.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/peptides.h:9, from /<>/include/BALL/STRUCTURE/peptideBuilder.h:9, from /<>/source/STRUCTURE/peptideBuilder.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/peptideBuilder.h:9:0, from /<>/source/STRUCTURE/peptideBuilder.C:5: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/peptideCapProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/peptideCapProcessor.h:9, from /<>/source/STRUCTURE/peptideCapProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/peptideCapProcessor.C:10:0: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/source/STRUCTURE/peptideCapProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::PeptideCapProcessor::operator()(BALL::Chain&)’: /<>/source/STRUCTURE/peptideCapProcessor.C:162:10: warning: variable ‘h1Atom’ set but not used [-Wunused-but-set-variable] Atom* h1Atom = NULL; ^~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/radialDistributionFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/piecewiseFunction.h:9, from /<>/include/BALL/MATHS/piecewisePolynomial.h:11, from /<>/include/BALL/STRUCTURE/radialDistributionFunction.h:9, from /<>/source/STRUCTURE/radialDistributionFunction.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/reconstructFragmentProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/reconstructFragmentProcessor.h:11, from /<>/source/STRUCTURE/reconstructFragmentProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RDFIntegrator.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/piecewiseFunction.h:9, from /<>/include/BALL/MATHS/piecewisePolynomial.h:11, from /<>/include/BALL/STRUCTURE/radialDistributionFunction.h:9, from /<>/include/BALL/STRUCTURE/RDFIntegrator.h:9, from /<>/source/STRUCTURE/RDFIntegrator.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RDFParameter.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/RDFParameter.h:9, from /<>/source/STRUCTURE/RDFParameter.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/RDFParameter.h:9, from /<>/source/STRUCTURE/RDFParameter.C:5: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::RadialDistributionFunction&}; _Tp = BALL::RadialDistributionFunction; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/RDFParameter.h:9, from /<>/source/STRUCTURE/RDFParameter.C:5: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual bool BALL::RDFParameter::extractSection(BALL::ForceFieldParameters&, const BALL::String&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RDFSection.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/piecewiseFunction.h:9, from /<>/include/BALL/MATHS/piecewisePolynomial.h:11, from /<>/include/BALL/STRUCTURE/radialDistributionFunction.h:9, from /<>/include/BALL/STRUCTURE/RDFSection.h:9, from /<>/source/STRUCTURE/RDFSection.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/reducedSurface.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/MATHS/common.h:33, from /<>/include/BALL/STRUCTURE/reducedSurface.h:9, from /<>/source/STRUCTURE/reducedSurface.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSEdge.h:9:0, from /<>/include/BALL/STRUCTURE/reducedSurface.h:41, from /<>/source/STRUCTURE/reducedSurface.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:41:0, from /<>/source/STRUCTURE/reducedSurface.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSFace.h:9:0, from /<>/include/BALL/STRUCTURE/reducedSurface.h:45, from /<>/source/STRUCTURE/reducedSurface.C:5: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:45:0, from /<>/source/STRUCTURE/reducedSurface.C:5: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/reducedSurface.C:5:0: /<>/include/BALL/STRUCTURE/reducedSurface.h:306:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:313:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:320:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:327:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:375:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:542:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:562:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:570:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:578:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:592:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:612:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:633:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:645:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:657:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:207:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:220:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:233:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:583:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:676:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:712:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:744:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:774:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:1006:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:1097:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:1194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:1212:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:1265:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ In file included from /<>/source/STRUCTURE/reducedSurface.C:8:0: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = unsigned int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = unsigned int]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = unsigned int; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/reducedSurface.C:1903:27: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/residueChecker.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/MATHS/common.h:33, from /<>/include/BALL/STRUCTURE/residueChecker.h:9, from /<>/source/STRUCTURE/residueChecker.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/rGroupAssembler.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/KERNEL/bond.h:9, from /<>/source/STRUCTURE/rGroupAssembler.C:2: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/rGroupAssembler.h:12:0, from /<>/source/STRUCTURE/rGroupAssembler.C:4: /<>/include/BALL/STRUCTURE/smilesParser.h:134:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/ringAnalyser.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/ringAnalyser.h:9, from /<>/source/STRUCTURE/ringAnalyser.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RSEdge.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/RSEdge.h:9, from /<>/source/STRUCTURE/RSEdge.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSEdge.h:9:0, from /<>/source/STRUCTURE/RSEdge.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/source/STRUCTURE/RSEdge.C:5:0: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSFace.h:9:0, from /<>/source/STRUCTURE/RSEdge.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/source/STRUCTURE/RSEdge.C:6:0: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/STRUCTURE/RSEdge.C:229:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RSFace.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/RSEdge.h:9, from /<>/source/STRUCTURE/RSFace.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSEdge.h:9:0, from /<>/source/STRUCTURE/RSFace.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/source/STRUCTURE/RSFace.C:5:0: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSFace.h:9:0, from /<>/source/STRUCTURE/RSFace.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/source/STRUCTURE/RSFace.C:6:0: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/STRUCTURE/RSFace.C:43:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ /<>/source/STRUCTURE/RSFace.C:97:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ /<>/source/STRUCTURE/RSFace.C:190:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RSVertex.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/RSEdge.h:9, from /<>/source/STRUCTURE/RSVertex.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSEdge.h:9:0, from /<>/source/STRUCTURE/RSVertex.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/source/STRUCTURE/RSVertex.C:5:0: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSFace.h:9:0, from /<>/source/STRUCTURE/RSVertex.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/source/STRUCTURE/RSVertex.C:6:0: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SASEdge.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SASEdge.h:9, from /<>/source/STRUCTURE/SASEdge.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASEdge.h:9:0, from /<>/source/STRUCTURE/SASEdge.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASFace.h:9:0, from /<>/source/STRUCTURE/SASEdge.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SASFace.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SASEdge.h:9, from /<>/source/STRUCTURE/SASFace.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASEdge.h:9:0, from /<>/source/STRUCTURE/SASFace.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASFace.h:9:0, from /<>/source/STRUCTURE/SASFace.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SASVertex.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SASEdge.h:9, from /<>/source/STRUCTURE/SASVertex.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASEdge.h:9:0, from /<>/source/STRUCTURE/SASVertex.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASFace.h:9:0, from /<>/source/STRUCTURE/SASVertex.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/sdGenerator.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/STRUCTURE/sdGenerator.h:9, from /<>/source/STRUCTURE/sdGenerator.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/STRUCTURE/sdGenerator.C:10: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/source/STRUCTURE/sdGenerator.C: In member function ‘void BALL::SDGenerator::prepare_()’: /<>/source/STRUCTURE/sdGenerator.C:107:10: warning: variable ‘has_acyclic_beta’ set but not used [-Wunused-but-set-variable] bool has_acyclic_beta = false; ^~~~~~~~~~~~~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SESEdge.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/source/STRUCTURE/SESEdge.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:9:0, from /<>/source/STRUCTURE/SESEdge.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:13:0, from /<>/source/STRUCTURE/SESEdge.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:9:0, from /<>/source/STRUCTURE/SESEdge.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:17:0, from /<>/source/STRUCTURE/SESEdge.C:6: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/SESEdge.C:7:0: /<>/include/BALL/STRUCTURE/SESVertex.h:145:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SESFace.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/source/STRUCTURE/SESFace.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:9:0, from /<>/source/STRUCTURE/SESFace.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:13:0, from /<>/source/STRUCTURE/SESFace.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:9:0, from /<>/source/STRUCTURE/SESFace.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:17:0, from /<>/source/STRUCTURE/SESFace.C:6: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/SESFace.C:7:0: /<>/include/BALL/STRUCTURE/SESVertex.h:145:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SESVertex.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/source/STRUCTURE/SESVertex.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:9:0, from /<>/source/STRUCTURE/SESVertex.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:13:0, from /<>/source/STRUCTURE/SESVertex.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:9:0, from /<>/source/STRUCTURE/SESVertex.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:17:0, from /<>/source/STRUCTURE/SESVertex.C:6: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/SESVertex.C:7:0: /<>/include/BALL/STRUCTURE/SESVertex.h:145:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/STRUCTURE/SESVertex.C:112:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/secondaryStructureProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/secondaryStructureProcessor.h:9, from /<>/source/STRUCTURE/secondaryStructureProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/sideChainPlacementProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/kernel.h:12, from /<>/source/STRUCTURE/sideChainPlacementProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/sideChainPlacementProcessor.C:9:0: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smilesParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/smilesParser.h:9, from /<>/source/STRUCTURE/smilesParser.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/smilesParser.C:5:0: /<>/include/BALL/STRUCTURE/smilesParser.h:134:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/source/STRUCTURE/smilesParser.C:112:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smartsParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/smartsParser.h:9, from /<>/source/STRUCTURE/smartsParser.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/smartsParser.C:5:0: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/source/STRUCTURE/smartsParser.C:733:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smartsMatcher.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/smartsParser.h:9, from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/source/STRUCTURE/smartsMatcher.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9:0, from /<>/source/STRUCTURE/smartsMatcher.C:5: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/solventAccessibleSurface.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SASEdge.h:9, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:9, from /<>/source/STRUCTURE/solventAccessibleSurface.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASEdge.h:9:0, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:9, from /<>/source/STRUCTURE/solventAccessibleSurface.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASFace.h:9:0, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:13, from /<>/source/STRUCTURE/solventAccessibleSurface.C:5: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:41:0, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:21, from /<>/source/STRUCTURE/solventAccessibleSurface.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:45:0, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:21, from /<>/source/STRUCTURE/solventAccessibleSurface.C:5: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:21:0, from /<>/source/STRUCTURE/solventAccessibleSurface.C:5: /<>/include/BALL/STRUCTURE/reducedSurface.h:306:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:313:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:320:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:327:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:375:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:542:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:562:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:570:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:578:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:592:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:612:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:633:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:645:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:657:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/solventAccessibleSurface.C:5:0: /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:86:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:91:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:100:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:105:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:114:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:119:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/source/STRUCTURE/solventAccessibleSurface.C:81:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/solventAccessibleSurface.C:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/solventAccessibleSurface.C:112:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/solventAccessibleSurface.C:125:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/solventAccessibleSurface.C:143:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/solventAccessibleSurface.C:156:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/solventExcludedSurface.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:9, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:9:0, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:9, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:13:0, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:9, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:9:0, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:13, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:17:0, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:13, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:17:0, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/STRUCTURE/SESVertex.h:145:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:21:0, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/STRUCTURE/reducedSurface.h:306:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:313:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:320:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:327:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:375:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:542:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:562:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:570:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:578:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:592:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:612:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:633:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:645:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:657:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:5:0: /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:154:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:352:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:502:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/source/STRUCTURE/solventExcludedSurface.C:630:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/source/STRUCTURE/solventExcludedSurface.C:1047:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/source/STRUCTURE/solventExcludedSurface.C:1653:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:45:0, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = int]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = int; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/solventExcludedSurface.C:1589:27: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = unsigned int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = unsigned int]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = unsigned int; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/solventExcludedSurface.C:2159:27: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/structureMapper.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/structureMapper.h:9, from /<>/source/STRUCTURE/structureMapper.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/structureMapper.C:7:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/source/STRUCTURE/structureMapper.C:9:0: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = unsigned int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = unsigned int]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = unsigned int; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/structureMapper.C:774:34: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::TVector3; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::TVector3; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::TVector3; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::TVector3]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::TVector3; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator >, BALL::HashGridBox3 >, unsigned int, BALL::HashGridBox3 >::BoxIteratorTraits>]’ /<>/source/STRUCTURE/structureMapper.C:865:40: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/surfaceProcessor.o In file included from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:9:0, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSEdge.h:9:0, from /<>/include/BALL/STRUCTURE/reducedSurface.h:41, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:41:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSFace.h:9:0, from /<>/include/BALL/STRUCTURE/reducedSurface.h:45, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:45:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12:0, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/STRUCTURE/reducedSurface.h:306:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:313:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:320:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:327:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:375:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:542:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:562:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:570:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:578:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:592:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:612:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:633:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:645:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:657:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:17:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:15, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/STRUCTURE/SESVertex.h:145:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:15:0, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:154:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:352:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:502:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSES.h:13:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:18, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/STRUCTURE/triangle.h:137:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/triangle.h:146:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSES.h:21:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:18, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/STRUCTURE/trianglePoint.h:148:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:18:0, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/STRUCTURE/triangulatedSES.h:135:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException,Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/triangulatedSES.h:196:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException,Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:21:0, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:86:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:91:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:100:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:105:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:114:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:119:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/STRUCTURE/surfaceProcessor.C:5:0: /<>/include/BALL/STRUCTURE/surfaceProcessor.h:101:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setProbeRadius(double radius) throw(Exception::OutOfRange){ ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:45:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:15, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:29: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = int; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/source/STRUCTURE/surfaceProcessor.C:109:1: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/triangle.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/triangleEdge.h:9, from /<>/source/STRUCTURE/triangle.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangleEdge.h:9:0, from /<>/source/STRUCTURE/triangle.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangleEdge.h:13:0, from /<>/source/STRUCTURE/triangle.C:5: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/source/STRUCTURE/triangle.C:6:0: /<>/include/BALL/STRUCTURE/triangle.h:137:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/triangle.h:146:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/STRUCTURE/triangle.C:7:0: /<>/include/BALL/STRUCTURE/trianglePoint.h:148:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/STRUCTURE/triangle.C:84:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/triangle.C:95:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/triangleEdge.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/triangleEdge.h:9, from /<>/source/STRUCTURE/triangleEdge.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangleEdge.h:9:0, from /<>/source/STRUCTURE/triangleEdge.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangleEdge.h:13:0, from /<>/source/STRUCTURE/triangleEdge.C:5: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/source/STRUCTURE/triangleEdge.C:6:0: /<>/include/BALL/STRUCTURE/triangle.h:137:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/triangle.h:146:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/STRUCTURE/triangleEdge.C:7:0: /<>/include/BALL/STRUCTURE/trianglePoint.h:148:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/trianglePoint.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/triangleEdge.h:9, from /<>/source/STRUCTURE/trianglePoint.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangleEdge.h:9:0, from /<>/source/STRUCTURE/trianglePoint.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangleEdge.h:13:0, from /<>/source/STRUCTURE/trianglePoint.C:5: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/source/STRUCTURE/trianglePoint.C:6:0: /<>/include/BALL/STRUCTURE/triangle.h:137:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/triangle.h:146:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/STRUCTURE/trianglePoint.C:7:0: /<>/include/BALL/STRUCTURE/trianglePoint.h:148:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/STRUCTURE/trianglePoint.C:93:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSAS.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/source/STRUCTURE/triangulatedSAS.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASEdge.h:9:0, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:9, from /<>/source/STRUCTURE/triangulatedSAS.C:11: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASFace.h:9:0, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:13, from /<>/source/STRUCTURE/triangulatedSAS.C:11: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:41:0, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:21, from /<>/source/STRUCTURE/triangulatedSAS.C:11: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:45:0, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:21, from /<>/source/STRUCTURE/triangulatedSAS.C:11: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:21:0, from /<>/source/STRUCTURE/triangulatedSAS.C:11: /<>/include/BALL/STRUCTURE/reducedSurface.h:306:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:313:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:320:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:327:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:375:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:542:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:562:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:570:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:578:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:592:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:612:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:633:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:645:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:657:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/triangulatedSAS.C:11:0: /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:86:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:91:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:100:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:105:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:114:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:119:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/STRUCTURE/triangulatedSAS.C:12:0: /<>/include/BALL/STRUCTURE/triangle.h:137:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/triangle.h:146:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/STRUCTURE/triangulatedSAS.C:14:0: /<>/include/BALL/STRUCTURE/trianglePoint.h:148:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/STRUCTURE/triangulatedSAS.C: In member function ‘void BALL::SASTriangulator::onePointOutside(BALL::Index, BALL::Triangle*, BALL::TriangulatedSurface&, BALL::HashGrid3&)’: /<>/source/STRUCTURE/triangulatedSAS.C:426:18: warning: variable ‘v2’ set but not used [-Wunused-but-set-variable] TrianglePoint* v2; ^~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSAS.h:49:0, from /<>/source/STRUCTURE/triangulatedSAS.C:15: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::TrianglePoint*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::TrianglePoint*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::TrianglePoint*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::TrianglePoint*]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::TrianglePoint*; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/triangulatedSAS.C:583:27: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSES.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:9, from /<>/source/STRUCTURE/triangulatedSES.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:9:0, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:9, from /<>/source/STRUCTURE/triangulatedSES.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:13:0, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:9, from /<>/source/STRUCTURE/triangulatedSES.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:9:0, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:13, from /<>/source/STRUCTURE/triangulatedSES.C:5: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:17:0, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:13, from /<>/source/STRUCTURE/triangulatedSES.C:5: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:17:0, from /<>/source/STRUCTURE/triangulatedSES.C:5: /<>/include/BALL/STRUCTURE/SESVertex.h:145:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:21:0, from /<>/source/STRUCTURE/triangulatedSES.C:5: /<>/include/BALL/STRUCTURE/reducedSurface.h:306:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:313:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:320:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:327:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:375:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:542:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:562:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:570:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:578:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:592:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:612:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:633:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:645:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:657:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/triangulatedSES.C:5:0: /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:154:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:352:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:502:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/source/STRUCTURE/triangulatedSES.C:6:0: /<>/include/BALL/STRUCTURE/triangle.h:137:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/triangle.h:146:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/STRUCTURE/triangulatedSES.C:8:0: /<>/include/BALL/STRUCTURE/trianglePoint.h:148:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/triangulatedSES.C:9:0: /<>/include/BALL/STRUCTURE/triangulatedSES.h:135:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException,Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/triangulatedSES.h:196:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException,Exception::DivisionByZero); ^~~~~ /<>/source/STRUCTURE/triangulatedSES.C:85:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException,Exception::DivisionByZero) ^~~~~ /<>/source/STRUCTURE/triangulatedSES.C:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException,Exception::DivisionByZero) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:45:0, from /<>/source/STRUCTURE/triangulatedSES.C:5: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:29: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = int; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/source/STRUCTURE/triangulatedSES.C:1763:1: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:9, from /<>/source/STRUCTURE/triangulatedSES.C:5: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::TVector3&}; _Tp = BALL::TVector3; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:9, from /<>/source/STRUCTURE/triangulatedSES.C:5: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BALL::SESTriangulator::partitionNonFreeSingularEdge(BALL::SESEdge*)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BALL::SESTriangulator::triangulateSingularToricFace(BALL::SESFace*, const double&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSurface.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/triangle.h:9, from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:9, from /<>/source/STRUCTURE/triangulatedSurface.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangle.h:9:0, from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:9, from /<>/source/STRUCTURE/triangulatedSurface.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangle.h:13:0, from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:9, from /<>/source/STRUCTURE/triangulatedSurface.C:5: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:9:0, from /<>/source/STRUCTURE/triangulatedSurface.C:5: /<>/include/BALL/STRUCTURE/triangle.h:137:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/triangle.h:146:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:17:0, from /<>/source/STRUCTURE/triangulatedSurface.C:5: /<>/include/BALL/STRUCTURE/trianglePoint.h:148:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/STRUCTURE/triangulatedSurface.C: In member function ‘void BALL::TriangulatedSphere::buildFourTriangles(BALL::TriangulatedSphere::Face, BALL::Triangle*, BALL::Triangle*, BALL::Triangle*, BALL::Triangle*)’: /<>/source/STRUCTURE/triangulatedSurface.C:1222:17: warning: array subscript is above array bounds [-Warray-bounds] if (face.e[i]->vertex_[0] == p3) ~~~~~~~~^ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/UCK.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/STRUCTURE/UCK.h:9, from /<>/source/STRUCTURE/UCK.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/residueRotamerSet.o In file included from /<>/include/BALL/MATHS/angle.h:9:0, from /<>/include/BALL/STRUCTURE/residueRotamerSet.h:9, from /<>/source/STRUCTURE/residueRotamerSet.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/residueRotamerSet.C:5:0: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/STRUCTURE/residueRotamerSet.C:8:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/source/STRUCTURE/residueRotamerSet.C:307:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& ResidueRotamerSet::operator [] (Position index) const throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/residueRotamerSet.C:318:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/rotamerLibrary.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/STRUCTURE/fragmentDB.h:9, from /<>/include/BALL/STRUCTURE/rotamerLibrary.h:9, from /<>/source/STRUCTURE/rotamerLibrary.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/rotamerLibrary.h:13:0, from /<>/source/STRUCTURE/rotamerLibrary.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RMSDMinimizer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/atomBijection.h:9, from /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:9, from /<>/source/STRUCTURE/RMSDMinimizer.C:10: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/RMSDMinimizer.C:10:0: /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:50:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates); ^~~~~ /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:53:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates); ^~~~~ /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:56:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates); ^~~~~ /<>/source/STRUCTURE/RMSDMinimizer.C:42:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates) ^~~~~ /<>/source/STRUCTURE/RMSDMinimizer.C:56:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates) ^~~~~ /<>/source/STRUCTURE/RMSDMinimizer.C:151:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates) ^~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smilesParserParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/smilesParser.h:9, from source/STRUCTURE/smilesParserParser.y:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from source/STRUCTURE/smilesParserParser.y:3:0: /<>/include/BALL/STRUCTURE/smilesParser.h:134:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smilesParserLexer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/smilesParser.h:9, from source/STRUCTURE/smilesParserLexer.l:2: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from source/STRUCTURE/smilesParserLexer.l:2:0: /<>/include/BALL/STRUCTURE/smilesParser.h:134:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/build/source/STRUCTURE/smilesParserLexer.C:1933:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] static void yynoreturn yy_fatal_error (const char* msg ) ^~~~~~~~~~~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smartsParserParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/smartsParser.h:9, from source/STRUCTURE/smartsParserParser.y:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from source/STRUCTURE/smartsParserParser.y:3:0: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smartsParserLexer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/smartsParser.h:9, from source/STRUCTURE/smartsParserLexer.l:2: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from source/STRUCTURE/smartsParserLexer.l:2:0: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/build/source/STRUCTURE/smartsParserLexer.C:2023:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] static void yynoreturn yy_fatal_error (const char* msg ) ^~~~~~~~~~~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/conformation.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/DOCKING/COMMON/conformation.h:8, from /<>/source/DOCKING/COMMON/conformation.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 88%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/constraints.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/include/BALL/DOCKING/COMMON/constraints.h:10, from /<>/source/DOCKING/COMMON/constraints.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/source/DOCKING/COMMON/constraints.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/conformationSet.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9:0, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:9, from /<>/source/DOCKING/COMMON/conformationSet.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/source/DOCKING/COMMON/conformationSet.C:6: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/DOCKING/COMMON/conformationSet.C:10:0: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ In file included from /<>/source/DOCKING/COMMON/conformationSet.C:11:0: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/DATATYPE/hashMap.h:13, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:9, from /<>/source/DOCKING/COMMON/conformationSet.C:6: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::SnapShot&}; _Tp = BALL::SnapShot; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/DATATYPE/hashMap.h:13, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:9, from /<>/source/DOCKING/COMMON/conformationSet.C:6: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BALL::ConformationSet::add(float, const BALL::System&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool BALL::ConformationSet::readDCDFile(const BALL::String&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/dockingAlgorithm.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:10, from /<>/source/DOCKING/COMMON/dockingAlgorithm.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:18, from /<>/source/DOCKING/COMMON/dockingAlgorithm.C:5: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/source/DOCKING/COMMON/dockingAlgorithm.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/FORMAT/dockResultFile.h:11:0, from /<>/source/DOCKING/COMMON/dockingAlgorithm.C:9: /<>/include/BALL/DOCKING/COMMON/result.h:128:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getInputConformer(Ligand* lig) throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/DOCKING/COMMON/result.h:134:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getFirstOutputConformation(Ligand* lig) throw(Exception::GeneralException); ^~~~~ In file included from /<>/source/DOCKING/COMMON/dockingAlgorithm.C:9:0: /<>/include/BALL/FORMAT/dockResultFile.h:43:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Receptor* readReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:53:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Ligand* readLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:73:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector readResults() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:88:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Molecule* read() throw (Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:89:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool write(const Molecule& mol) throw (File::CannotWrite); ^~~~~ In file included from /<>/source/DOCKING/COMMON/dockingAlgorithm.C:9:0: /<>/include/BALL/FORMAT/dockResultFile.h:203:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptors_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:204:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptor_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:205:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:206:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:207:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readPDBAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:209:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResults_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:210:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:211:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readSubResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:212:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readEntry() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:224:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigands() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:225:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigand_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:226:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:227:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformations(FlexibleMolecule* target) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:228:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformation(Conformation* conformation) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:229:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readCoordinates() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:230:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibility() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:231:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibilities() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:232:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFullFlexResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:233:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readRotamericResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:234:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtoms() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:235:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:236:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBonds() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:237:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBond() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:240:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:241:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:242:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:243:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:244:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildResidue() throw(Exception::ParseError); ^~~~~ In file included from /<>/source/DOCKING/COMMON/dockingAlgorithm.C:13:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/source/DOCKING/COMMON/dockingAlgorithm.C: In member function ‘virtual double BALL::DockingAlgorithm::dockLigand(BALL::AtomContainer&, bool)’: /<>/source/DOCKING/COMMON/dockingAlgorithm.C:304:53: warning: unused parameter ‘ligand’ [-Wunused-parameter] double DockingAlgorithm::dockLigand(AtomContainer& ligand, bool verbose) ^~~~~~ /<>/source/DOCKING/COMMON/dockingAlgorithm.C:304:66: warning: unused parameter ‘verbose’ [-Wunused-parameter] double DockingAlgorithm::dockLigand(AtomContainer& ligand, bool verbose) ^~~~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/constraints.h:26:0, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:30, from /<>/source/DOCKING/COMMON/dockingAlgorithm.C:5: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = unsigned int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = unsigned int]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = unsigned int; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/DOCKING/COMMON/dockingAlgorithm.C:713:36: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::TVector3; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:26: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::TVector3; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::TVector3; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::TVector3]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::TVector3; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator >, BALL::HashGridBox3 >, unsigned int, BALL::HashGridBox3 >::BoxIteratorTraits>]’ /<>/source/DOCKING/COMMON/dockingAlgorithm.C:805:38: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/dockResult.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/source/DOCKING/COMMON/dockResult.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/DOCKING/COMMON/dockResult.h:15, from /<>/source/DOCKING/COMMON/dockResult.C:9: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/DOCKING/COMMON/dockResult.C:9:0: /<>/include/BALL/DOCKING/COMMON/dockResult.h:104:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/DOCKING/COMMON/dockResult.h:115:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/DOCKING/COMMON/dockResult.h:120:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/DOCKING/COMMON/dockResult.h:125:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/DOCKING/COMMON/dockResult.h:130:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/DOCKING/COMMON/dockResult.h:148:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/source/DOCKING/COMMON/dockResult.C:102:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/DOCKING/COMMON/dockResult.C:120:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/DOCKING/COMMON/dockResult.C:147:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/DOCKING/COMMON/dockResult.C:166:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/DOCKING/COMMON/dockResult.C:178:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/DOCKING/COMMON/dockResult.C:215:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/flexDefinition.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/include/BALL/DOCKING/COMMON/flexDefinition.h:9, from /<>/source/DOCKING/COMMON/flexDefinition.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/flexibleMolecule.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/include/BALL/DOCKING/COMMON/flexibleMolecule.h:9, from /<>/source/DOCKING/COMMON/flexibleMolecule.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/gridAnalysis.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/DOCKING/COMMON/gridAnalysis.h:9, from /<>/source/DOCKING/COMMON/gridAnalysis.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/DOCKING/COMMON/gridAnalysis.h:9, from /<>/source/DOCKING/COMMON/gridAnalysis.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/poseClustering.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/DOCKING/COMMON/poseClustering.h:9, from /<>/source/DOCKING/COMMON/poseClustering.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/DOCKING/COMMON/poseClustering.h:13, from /<>/source/DOCKING/COMMON/poseClustering.C:5: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/DOCKING/COMMON/poseClustering.C:8:0: /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:50:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates); ^~~~~ /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:53:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates); ^~~~~ /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:56:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates); ^~~~~ In file included from /<>/source/DOCKING/COMMON/poseClustering.C:9:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/source/DOCKING/COMMON/poseClustering.C: In member function ‘bool BALL::PoseClustering::nearestNeighborChainCompute_()’: /<>/source/DOCKING/COMMON/poseClustering.C:927:8: warning: unused variable ‘run_parallel’ [-Wunused-variable] bool run_parallel = options.getBool(PoseClustering::Option::RUN_PARALLEL); ^~~~~~~~~~~~ /<>/source/DOCKING/COMMON/poseClustering.C: In member function ‘void BALL::PoseClustering::printCluster_(BALL::Index, std::ostream&) const’: /<>/source/DOCKING/COMMON/poseClustering.C:2470:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (cluster_representatives_.size() <= i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/receptor.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/include/BALL/DOCKING/COMMON/receptor.h:9, from /<>/source/DOCKING/COMMON/receptor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/result.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/include/BALL/DOCKING/COMMON/receptor.h:9, from /<>/include/BALL/DOCKING/COMMON/result.h:9, from /<>/source/DOCKING/COMMON/result.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/DOCKING/COMMON/result.C:5:0: /<>/include/BALL/DOCKING/COMMON/result.h:128:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getInputConformer(Ligand* lig) throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/DOCKING/COMMON/result.h:134:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getFirstOutputConformation(Ligand* lig) throw(Exception::GeneralException); ^~~~~ /<>/source/DOCKING/COMMON/result.C:222:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/source/DOCKING/COMMON/result.C:237:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/include/BALL/DOCKING/COMMON/receptor.h:9, from /<>/include/BALL/DOCKING/COMMON/result.h:9, from /<>/source/DOCKING/COMMON/result.C:5: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::Result::ResultData&}; _Tp = BALL::Result::ResultData; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/COMMON/logStream.h:36, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/include/BALL/DOCKING/COMMON/receptor.h:9, from /<>/include/BALL/DOCKING/COMMON/result.h:9, from /<>/source/DOCKING/COMMON/result.C:5: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BALL::Result::add(BALL::String, BALL::Result::ResultData&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector BALL::Result::getOutputConformations(BALL::Ligand*)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/sideChainOptimizer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/DOCKING/COMMON/sideChainOptimizer.h:9, from /<>/source/DOCKING/COMMON/sideChainOptimizer.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/DOCKING/COMMON/sideChainOptimizer.h:9, from /<>/source/DOCKING/COMMON/sideChainOptimizer.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/staticLigandFragment.o In file included from /<>/include/BALL/MATHS/matrix44.h:11:0, from /<>/include/BALL/DOCKING/COMMON/staticLigandFragment.h:9, from /<>/source/DOCKING/COMMON/staticLigandFragment.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/structurePreparer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/DOCKING/COMMON/structurePreparer.h:10, from /<>/source/DOCKING/COMMON/structurePreparer.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/DOCKING/COMMON/structurePreparer.C:7:0: /<>/include/BALL/STRUCTURE/defaultProcessors.h:74:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:109:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:157:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/DOCKING/COMMON/structurePreparer.C:13:0: /<>/include/BALL/STRUCTURE/buildBondsProcessor.h:105:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] BuildBondsProcessor(const String& file_name) throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/buildBondsProcessor.h:129:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setBondLengths(const String& file_name) throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/buildBondsProcessor.h:169:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void readBondLengthsFromFile_(const String& file_name = "") throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:17:0, from /<>/source/DOCKING/COMMON/structurePreparer.C:15: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25:0, from /<>/source/DOCKING/COMMON/structurePreparer.C:15: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/DOCKING/COMMON/structurePreparer.C:15:0: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /<>/source/DOCKING/COMMON/structurePreparer.C:18: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:9:0, from /<>/source/DOCKING/COMMON/structurePreparer.C:18: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:11:0, from /<>/source/DOCKING/COMMON/structurePreparer.C:18: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/DOCKING/COMMON/structurePreparer.C:18:0: /<>/include/BALL/SCORING/COMPONENTS/PLP.h:106:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/dockProblem.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/HINFile.h:9, from /<>/source/DOCKING/GENETICDOCK/dockProblem.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/DOCKING/GENETICDOCK/dockProblem.C:12:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:18, from /<>/include/BALL/DOCKING/GENETICDOCK/evolutionaryDocking.h:18, from /<>/source/DOCKING/GENETICDOCK/dockProblem.C:18: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/DOCKING/GENETICDOCK/evolutionaryDocking.h:21, from /<>/source/DOCKING/GENETICDOCK/dockProblem.C:18: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:10:0, from /<>/include/BALL/DOCKING/GENETICDOCK/dockProblem.h:19, from /<>/source/DOCKING/GENETICDOCK/dockProblem.C:19: /<>/include/BALL/MATHS/randomNumberGenerator.h:72:58: warning: ‘RandomNumberGenerator’ is deprecated [-Wdeprecated-declarations] RandomNumberGenerator(const RandomNumberGenerator& rng); ^ In file included from /<>/include/BALL/DOCKING/GENETICDOCK/dockProblem.h:19:0, from /<>/source/DOCKING/GENETICDOCK/dockProblem.C:19: /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:178:29: warning: ‘RandomNumberGenerator’ is deprecated [-Wdeprecated-declarations] RandomNumberGenerator rng_; ^~~~ In file included from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:10:0, from /<>/include/BALL/DOCKING/GENETICDOCK/dockProblem.h:19, from /<>/source/DOCKING/GENETICDOCK/dockProblem.C:19: /<>/include/BALL/MATHS/randomNumberGenerator.h:63:36: note: declared here class BALL_EXPORT BALL_DEPRECATED RandomNumberGenerator ^~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/evolutionaryDocking.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/include/BALL/DATATYPE/regularData3D.h:9, from /<>/include/BALL/DOCKING/GENETICDOCK/evolutionaryDocking.h:10, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:18, from /<>/include/BALL/DOCKING/GENETICDOCK/evolutionaryDocking.h:18, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:5: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/DOCKING/GENETICDOCK/evolutionaryDocking.h:21, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:10:0, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:6: /<>/include/BALL/MATHS/randomNumberGenerator.h:72:58: warning: ‘RandomNumberGenerator’ is deprecated [-Wdeprecated-declarations] RandomNumberGenerator(const RandomNumberGenerator& rng); ^ In file included from /<>/include/BALL/DOCKING/GENETICDOCK/geneticIndividual.h:11:0, from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:12, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:6: /<>/include/BALL/DOCKING/GENETICDOCK/genes.h:50:34: warning: ‘RandomNumberGenerator’ is deprecated [-Wdeprecated-declarations] static RandomNumberGenerator rng_; ^~~~ In file included from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:10:0, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:6: /<>/include/BALL/MATHS/randomNumberGenerator.h:63:36: note: declared here class BALL_EXPORT BALL_DEPRECATED RandomNumberGenerator ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:6:0: /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:178:29: warning: ‘RandomNumberGenerator’ is deprecated [-Wdeprecated-declarations] RandomNumberGenerator rng_; ^~~~ In file included from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:10:0, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:6: /<>/include/BALL/MATHS/randomNumberGenerator.h:63:36: note: declared here class BALL_EXPORT BALL_DEPRECATED RandomNumberGenerator ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:10:0, from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:10:0, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:8: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23:0, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:9: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:9: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9:0, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:9: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25:0, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:10: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10:0, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:10: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/genes.o In file included from /<>/include/BALL/MATHS/matrix44.h:11:0, from /<>/include/BALL/MATHS/quaternion.h:8, from /<>/include/BALL/DOCKING/GENETICDOCK/genes.h:10, from /<>/source/DOCKING/GENETICDOCK/genes.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/DOCKING/GENETICDOCK/genes.C:6:0: /<>/include/BALL/MATHS/randomNumberGenerator.h:72:58: warning: ‘RandomNumberGenerator’ is deprecated [-Wdeprecated-declarations] RandomNumberGenerator(const RandomNumberGenerator& rng); ^ /<>/source/DOCKING/GENETICDOCK/genes.C:14:38: warning: ‘RandomNumberGenerator’ is deprecated [-Wdeprecated-declarations] RandomNumberGenerator GenericGene::rng_; ^~~~ In file included from /<>/source/DOCKING/GENETICDOCK/genes.C:6:0: /<>/include/BALL/MATHS/randomNumberGenerator.h:63:36: note: declared here class BALL_EXPORT BALL_DEPRECATED RandomNumberGenerator ^~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/geneticAlgorithm.o In file included from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:10:0, from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:9: /<>/include/BALL/MATHS/randomNumberGenerator.h:72:58: warning: ‘RandomNumberGenerator’ is deprecated [-Wdeprecated-declarations] RandomNumberGenerator(const RandomNumberGenerator& rng); ^ In file included from /<>/include/BALL/MATHS/matrix44.h:11:0, from /<>/include/BALL/MATHS/quaternion.h:8, from /<>/include/BALL/DOCKING/GENETICDOCK/genes.h:10, from /<>/include/BALL/DOCKING/GENETICDOCK/geneticIndividual.h:11, from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:12, from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/GENETICDOCK/geneticIndividual.h:11:0, from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:12, from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:9: /<>/include/BALL/DOCKING/GENETICDOCK/genes.h:50:34: warning: ‘RandomNumberGenerator’ is deprecated [-Wdeprecated-declarations] static RandomNumberGenerator rng_; ^~~~ In file included from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:10:0, from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:9: /<>/include/BALL/MATHS/randomNumberGenerator.h:63:36: note: declared here class BALL_EXPORT BALL_DEPRECATED RandomNumberGenerator ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:9:0: /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:178:29: warning: ‘RandomNumberGenerator’ is deprecated [-Wdeprecated-declarations] RandomNumberGenerator rng_; ^~~~ In file included from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:10:0, from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:9: /<>/include/BALL/MATHS/randomNumberGenerator.h:63:36: note: declared here class BALL_EXPORT BALL_DEPRECATED RandomNumberGenerator ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:18, from /<>/include/BALL/DOCKING/GENETICDOCK/evolutionaryDocking.h:18, from /<>/include/BALL/DOCKING/GENETICDOCK/dockProblem.h:20, from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:10: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/DOCKING/GENETICDOCK/evolutionaryDocking.h:21, from /<>/include/BALL/DOCKING/GENETICDOCK/dockProblem.h:20, from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:10: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:9, from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:9: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::GeneticIndividual&}; _Tp = BALL::GeneticIndividual; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:9, from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:9: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BALL::GeneticAlgorithm::cleanPool(std::vector&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:9, from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:9: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void BALL::GeneticAlgorithm::select(BALL::Size)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:9, from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:9: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BALL::GeneticAlgorithm::mate()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/geneticIndividual.o In file included from /<>/include/BALL/MATHS/matrix44.h:11:0, from /<>/include/BALL/MATHS/quaternion.h:8, from /<>/include/BALL/DOCKING/GENETICDOCK/genes.h:10, from /<>/include/BALL/DOCKING/GENETICDOCK/geneticIndividual.h:11, from /<>/source/DOCKING/GENETICDOCK/geneticIndividual.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 92%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/parameter.o In file included from /<>/include/BALL/MATHS/matrix44.h:11:0, from /<>/include/BALL/MATHS/quaternion.h:8, from /<>/include/BALL/DOCKING/GENETICDOCK/parameter.h:9, from /<>/source/DOCKING/GENETICDOCK/parameter.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/rotateBond.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/hashSet.h:9, from /<>/include/BALL/DOCKING/GENETICDOCK/rotateBond.h:9, from /<>/source/DOCKING/GENETICDOCK/rotateBond.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/rotateBonds.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/source/DOCKING/GENETICDOCK/rotateBonds.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/IMGDOCK/IMGDock.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:10, from /<>/include/BALL/DOCKING/IMGDOCK/IMGDock.h:9, from /<>/source/DOCKING/IMGDOCK/IMGDock.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:18, from /<>/include/BALL/DOCKING/IMGDOCK/IMGDock.h:9, from /<>/source/DOCKING/IMGDOCK/IMGDock.C:6: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/IMGDOCK/IMGDock.h:13:0, from /<>/source/DOCKING/IMGDOCK/IMGDock.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/DOCKING/IMGDOCK/IMGDock.h:21, from /<>/source/DOCKING/IMGDOCK/IMGDock.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:10:0, from /<>/source/DOCKING/IMGDOCK/IMGDock.C:14: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23:0, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/DOCKING/IMGDOCK/IMGDock.C:15: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/DOCKING/IMGDOCK/IMGDock.C:15: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9:0, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/DOCKING/IMGDOCK/IMGDock.C:15: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25:0, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /<>/source/DOCKING/IMGDOCK/IMGDock.C:16: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10:0, from /<>/source/DOCKING/IMGDOCK/IMGDock.C:16: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/geometricFit.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/include/BALL/DATATYPE/regularData3D.h:9, from /<>/include/BALL/DOCKING/geometricFit.h:9, from /<>/source/DOCKING/geometricFit.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:18, from /<>/include/BALL/DOCKING/geometricFit.h:25, from /<>/source/DOCKING/geometricFit.C:5: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/DOCKING/geometricFit.C:20:0: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSEdge.h:9:0, from /<>/include/BALL/STRUCTURE/reducedSurface.h:41, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12, from /<>/source/DOCKING/geometricFit.C:22: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:41:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12, from /<>/source/DOCKING/geometricFit.C:22: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSFace.h:9:0, from /<>/include/BALL/STRUCTURE/reducedSurface.h:45, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12, from /<>/source/DOCKING/geometricFit.C:22: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:45:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12, from /<>/source/DOCKING/geometricFit.C:22: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12:0, from /<>/source/DOCKING/geometricFit.C:22: /<>/include/BALL/STRUCTURE/reducedSurface.h:306:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:313:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:320:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:327:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:375:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:542:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:562:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:570:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:578:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:592:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:612:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:633:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:645:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:657:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:17:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:15, from /<>/source/DOCKING/geometricFit.C:22: /<>/include/BALL/STRUCTURE/SESVertex.h:145:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:15:0, from /<>/source/DOCKING/geometricFit.C:22: /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:154:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:352:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:502:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSES.h:13:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:18, from /<>/source/DOCKING/geometricFit.C:22: /<>/include/BALL/STRUCTURE/triangle.h:137:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/triangle.h:146:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSES.h:21:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:18, from /<>/source/DOCKING/geometricFit.C:22: /<>/include/BALL/STRUCTURE/trianglePoint.h:148:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:18:0, from /<>/source/DOCKING/geometricFit.C:22: /<>/include/BALL/STRUCTURE/triangulatedSES.h:135:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException,Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/triangulatedSES.h:196:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException,Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:21:0, from /<>/source/DOCKING/geometricFit.C:22: /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:86:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:91:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:100:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:105:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:114:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:119:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/DOCKING/geometricFit.C:22:0: /<>/include/BALL/STRUCTURE/surfaceProcessor.h:101:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setProbeRadius(double radius) throw(Exception::OutOfRange){ ^~~~~ /<>/source/DOCKING/geometricFit.C: In member function ‘void BALL::GeometricFit::makeFFTGrid_(BALL::GeometricFit::ProteinIndex)’: /<>/source/DOCKING/geometricFit.C:850:9: warning: variable ‘PENALTY’ set but not used [-Wunused-but-set-variable] int PENALTY; ^~~~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/constraints.h:26:0, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:30, from /<>/include/BALL/DOCKING/geometricFit.h:25, from /<>/source/DOCKING/geometricFit.C:5: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:29: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = int; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/source/DOCKING/geometricFit.C:1978:2: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/binaryFileAdaptor.o [ 96%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/directory.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SYSTEM/directory.h:11, from /<>/source/SYSTEM/directory.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/file.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/source/SYSTEM/file.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/fileSystem.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SYSTEM/fileSystem.h:11, from /<>/source/SYSTEM/fileSystem.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/mutex.o [ 96%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/path.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SYSTEM/path.h:22, from /<>/source/SYSTEM/path.C:11: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/simpleDownloader.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SYSTEM/simpleDownloader.h:5, from /<>/source/SYSTEM/simpleDownloader.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/sysinfo.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SYSTEM/sysinfo.h:11, from /<>/source/SYSTEM/sysinfo.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/systemCalls.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SYSTEM/systemCalls.h:11, from /<>/source/SYSTEM/systemCalls.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/timer.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SYSTEM/timer.h:11, from /<>/source/SYSTEM/timer.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/networking.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SYSTEM/networking.h:13, from /<>/source/SYSTEM/networking.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/moc_simpleDownloader.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/build/source/SYSTEM/../../../include/BALL/SYSTEM/simpleDownloader.h:5, from /<>/build/source/SYSTEM/moc_simpleDownloader.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/XRAY/crystalGenerator.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/XRAY/crystalGenerator.h:8, from /<>/source/XRAY/crystalGenerator.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/XRAY/crystalGenerator.h:28:0, from /<>/source/XRAY/crystalGenerator.C:1: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ [ 96%] Building CXX object CMakeFiles/BALL.dir/source/XRAY/crystalInfo.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SYSTEM/path.h:22, from /<>/source/XRAY/crystalInfo.C:4: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [100%] Building CXX object CMakeFiles/BALL.dir/source/XRAY/spaceGroupParameters.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/XRAY/spaceGroupParameters.h:8, from /<>/source/XRAY/spaceGroupParameters.C:4: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/XRAY/spaceGroupParameters.C: In member function ‘virtual bool BALL::SpaceGroupParameters::extractSpaceGroup(BALL::Parameters&, const BALL::String&)’: /<>/source/XRAY/spaceGroupParameters.C:26:59: warning: unused parameter ‘parameters’ [-Wunused-parameter] bool SpaceGroupParameters::extractSpaceGroup(Parameters& parameters, const String& space_group) ^~~~~~~~~~ /<>/source/XRAY/spaceGroupParameters.C:26:85: warning: unused parameter ‘space_group’ [-Wunused-parameter] bool SpaceGroupParameters::extractSpaceGroup(Parameters& parameters, const String& space_group) ^~~~~~~~~~~ /<>/source/XRAY/spaceGroupParameters.C: In member function ‘virtual bool BALL::SpaceGroupParameters::extractSpaceGroup(BALL::Parameters&, BALL::Position)’: /<>/source/XRAY/spaceGroupParameters.C:31:59: warning: unused parameter ‘parameters’ [-Wunused-parameter] bool SpaceGroupParameters::extractSpaceGroup(Parameters& parameters, const Position iucr_no) ^~~~~~~~~~ /<>/source/XRAY/spaceGroupParameters.C:31:86: warning: unused parameter ‘iucr_no’ [-Wunused-parameter] bool SpaceGroupParameters::extractSpaceGroup(Parameters& parameters, const Position iucr_no) ^~~~~~~ [100%] Linking CXX shared library lib/libBALL.so message after library is built ========================================================================== The BALL library has been built. You should now build BALLView and the unit tests. Then you should test your installation by executing the tests. Make sure to add the BALL and contrib lib/ path to your LD_LIBRARY_PATH environment variable. Otherwise the tests and BALLView will not work. For a full list of targets execute: make targets ========================================================================== make[5]: Leaving directory '/<>/build' [100%] Built target BALL make[4]: Leaving directory '/<>/build' make[3]: Leaving directory '/<>/build' make[3]: Entering directory '/<>/build' make[4]: Entering directory '/<>/build' make[5]: Entering directory '/<>/build' make[5]: Leaving directory '/<>/build' [ 54%] Built target BALL make[5]: Entering directory '/<>/build' [ 54%] Generating source/VIEW/INPUT/moc_inputPlugin.C /<>/include/BALL/VIEW/INPUT/inputPlugin.h:0: Note: No relevant classes found. No output generated. [ 54%] Generating include/BALL/VIEW/UIC/ui_assignBondOrderConfigurationDialog.h [ 54%] Generating include/BALL/VIEW/UIC/ui_assignBondOrderResultsDialog.h [ 54%] Generating include/BALL/VIEW/UIC/ui_atomOverview.h [ 54%] Generating include/BALL/VIEW/UIC/ui_amberConfigurationDialog.h [ 54%] Generating include/BALL/VIEW/UIC/ui_bondProperties.h [ 54%] Generating include/BALL/VIEW/UIC/ui_charmmConfigurationDialog.h [ 54%] Generating include/BALL/VIEW/UIC/ui_contourSurfaceDialog.h [ 56%] Generating include/BALL/VIEW/UIC/ui_coloringSettingsDialog.h [ 56%] Generating include/BALL/VIEW/UIC/ui_compositeProperties.h [ 56%] Generating include/BALL/VIEW/UIC/ui_clippingDialog.h [ 56%] Generating include/BALL/VIEW/UIC/ui_dockDialog.h [ 56%] Generating include/BALL/VIEW/UIC/ui_dockProgressDialog.h [ 56%] Generating include/BALL/VIEW/UIC/ui_dockResultDialog.h [ 56%] Generating include/BALL/VIEW/UIC/ui_downloadPDBFile.h [ 56%] Generating include/BALL/VIEW/UIC/ui_downloadElectronDensity.h [ 56%] Generating include/BALL/VIEW/UIC/ui_editSettings.h [ 56%] Generating include/BALL/VIEW/UIC/ui_editSingleShortcut.h [ 56%] Generating include/BALL/VIEW/UIC/ui_editorPDBInfoDialog.h [ 56%] Generating include/BALL/VIEW/UIC/ui_displayProperties.h [ 56%] Generating include/BALL/VIEW/UIC/ui_fieldLinesDialog.h /<>/source/VIEW/DIALOGS/fieldLinesDialog.ui: Warning: An invalid icon property 'windowIcon' was encountered. [ 56%] Generating include/BALL/VIEW/UIC/ui_FDPBDialog.h [ 56%] Generating include/BALL/VIEW/UIC/ui_generateCrystalDialog.h [ 56%] Generating include/BALL/VIEW/UIC/ui_gridColorWidget.h [ 56%] Generating include/BALL/VIEW/UIC/ui_gridVisualizationDialog.h [ 56%] Generating include/BALL/VIEW/UIC/ui_labelDialog.h [ 58%] Generating include/BALL/VIEW/UIC/ui_lightSettings.h /<>/source/VIEW/DIALOGS/lightSettings.ui: Warning: The name 'gridLayout' (QGridLayout) is already in use, defaulting to 'gridLayout1'. [ 58%] Generating include/BALL/VIEW/UIC/ui_mainControlPreferences.h [ 58%] Generating include/BALL/VIEW/UIC/ui_materialSettings.h [ 58%] Generating include/BALL/VIEW/UIC/ui_minimizationDialog.h [ 58%] Generating include/BALL/VIEW/UIC/ui_modelSettingsDialog.h [ 58%] Generating include/BALL/VIEW/UIC/ui_modifyRepresentationDialog.h [ 58%] Generating include/BALL/VIEW/UIC/ui_molecularDynamicsDialog.h [ 58%] Generating include/BALL/VIEW/UIC/ui_MMFF94ConfigurationDialog.h [ 58%] Generating include/BALL/VIEW/UIC/ui_networkPreferences.h [ 58%] Generating include/BALL/VIEW/UIC/ui_openSavePreferences.h [ 58%] Generating include/BALL/VIEW/UIC/ui_parsedFunctionDialog.h [ 58%] Generating include/BALL/VIEW/UIC/ui_peptideDialog.h [ 58%] Generating include/BALL/VIEW/UIC/ui_pluginDialog.h [ 58%] Generating include/BALL/VIEW/UIC/ui_preferences.h [ 58%] Generating include/BALL/VIEW/UIC/ui_propEditorWidget.h [ 58%] Generating include/BALL/VIEW/UIC/ui_propertyEditor.h [ 58%] Generating include/BALL/VIEW/UIC/ui_exportGeometryDialog.h [ 58%] Generating include/BALL/VIEW/UIC/ui_PTEDialog.h [ 60%] Generating include/BALL/VIEW/UIC/ui_pubchemDialog.h [ 60%] Generating include/BALL/VIEW/UIC/ui_raytraceableContourSurfaceDialog.h [ 60%] Generating include/BALL/VIEW/UIC/ui_setCamera.h [ 60%] Generating include/BALL/VIEW/UIC/ui_setClippingPlane.h [ 60%] Generating include/BALL/VIEW/UIC/ui_shortcutDialog.h [ 60%] Generating include/BALL/VIEW/UIC/ui_snapShotVisualisation.h [ 60%] Generating include/BALL/VIEW/UIC/ui_stageSettings.h [ 60%] Generating include/BALL/VIEW/UIC/ui_stereoSettingsDialog.h [ 60%] Generating include/BALL/VIEW/UIC/ui_undoManagerDialog.h [ 60%] Generating include/BALL/VIEW/UIC/ui_pythonSettings.h [ 60%] Generating include/BALL/VIEW/UIC/ui_geometricFitDialog.h [ 60%] Generating source/VIEW/DIALOGS/moc_assignBondOrderConfigurationDialog.C [ 60%] Generating source/VIEW/DIALOGS/moc_assignBondOrderResultsDialog.C [ 60%] Generating source/VIEW/DIALOGS/moc_atomOverview.C [ 60%] Generating source/VIEW/DIALOGS/moc_amberConfigurationDialog.C [ 60%] Generating source/VIEW/DIALOGS/moc_bondProperties.C [ 60%] Generating source/VIEW/DIALOGS/moc_charmmConfigurationDialog.C [ 62%] Generating source/VIEW/DIALOGS/moc_contourSurfaceDialog.C [ 62%] Generating source/VIEW/DIALOGS/moc_coloringSettingsDialog.C [ 62%] Generating source/VIEW/DIALOGS/moc_compositeProperties.C [ 62%] Generating source/VIEW/DIALOGS/moc_clippingDialog.C [ 62%] Generating source/VIEW/DIALOGS/moc_dockDialog.C [ 62%] Generating source/VIEW/DIALOGS/moc_dockProgressDialog.C [ 62%] Generating source/VIEW/DIALOGS/moc_dockResultDialog.C [ 62%] Generating source/VIEW/DIALOGS/moc_downloadPDBFile.C [ 62%] Generating source/VIEW/DIALOGS/moc_downloadElectronDensity.C [ 62%] Generating source/VIEW/DIALOGS/moc_editSettings.C [ 62%] Generating source/VIEW/DIALOGS/moc_editSingleShortcut.C [ 62%] Generating source/VIEW/DIALOGS/moc_displayProperties.C [ 62%] Generating source/VIEW/DIALOGS/moc_fieldLinesDialog.C [ 62%] Generating source/VIEW/DIALOGS/moc_FDPBDialog.C [ 62%] Generating source/VIEW/DIALOGS/moc_generateCrystalDialog.C [ 62%] Generating source/VIEW/DIALOGS/moc_gridVisualizationDialog.C [ 62%] Generating source/VIEW/DIALOGS/moc_labelDialog.C [ 62%] Generating source/VIEW/DIALOGS/moc_lightSettings.C [ 64%] Generating source/VIEW/DIALOGS/moc_mainControlPreferences.C [ 64%] Generating source/VIEW/DIALOGS/moc_materialSettings.C [ 64%] Generating source/VIEW/DIALOGS/moc_minimizationDialog.C [ 64%] Generating source/VIEW/DIALOGS/moc_modelSettingsDialog.C [ 64%] Generating source/VIEW/DIALOGS/moc_modifyRepresentationDialog.C [ 64%] Generating source/VIEW/DIALOGS/moc_molecularDynamicsDialog.C [ 64%] Generating source/VIEW/DIALOGS/moc_molecularFileDialog.C [ 64%] Generating source/VIEW/DIALOGS/moc_MMFF94ConfigurationDialog.C [ 64%] Generating source/VIEW/DIALOGS/moc_networkPreferences.C [ 64%] Generating source/VIEW/DIALOGS/moc_openSavePreferences.C [ 64%] Generating source/VIEW/DIALOGS/moc_parsedFunctionDialog.C [ 64%] Generating source/VIEW/DIALOGS/moc_peptideDialog.C [ 64%] Generating source/VIEW/DIALOGS/moc_pluginDialog.C [ 64%] Generating source/VIEW/DIALOGS/moc_preferences.C [ 64%] Generating source/VIEW/DIALOGS/moc_exportGeometryDialog.C [ 64%] Generating source/VIEW/DIALOGS/moc_PTEDialog.C [ 64%] Generating source/VIEW/DIALOGS/moc_pubchemDialog.C [ 64%] Generating source/VIEW/DIALOGS/moc_raytraceableContourSurfaceDialog.C [ 66%] Generating source/VIEW/DIALOGS/moc_setCamera.C [ 66%] Generating source/VIEW/DIALOGS/moc_setClippingPlane.C [ 66%] Generating source/VIEW/DIALOGS/moc_serverPreferences.C [ 66%] Generating source/VIEW/DIALOGS/moc_shortcutDialog.C [ 66%] Generating source/VIEW/DIALOGS/moc_snapShotVisualisation.C [ 66%] Generating source/VIEW/DIALOGS/moc_stageSettings.C [ 66%] Generating source/VIEW/DIALOGS/moc_stereoSettingsDialog.C [ 66%] Generating source/VIEW/DIALOGS/moc_undoManagerDialog.C [ 66%] Generating source/VIEW/DIALOGS/moc_pythonSettings.C [ 66%] Generating source/VIEW/DIALOGS/moc_geometricFitDialog.C [ 66%] Generating source/VIEW/DATATYPE/moc_dataset.C [ 66%] Generating source/VIEW/DATATYPE/moc_standardDatasets.C [ 66%] Generating source/VIEW/KERNEL/MODES/moc_moveMode.C [ 66%] Generating source/VIEW/KERNEL/MODES/moc_editMode.C [ 66%] Generating source/VIEW/KERNEL/MODES/moc_interactionMode.C [ 66%] Generating source/VIEW/KERNEL/MODES/moc_interactionModeManager.C [ 66%] Generating source/VIEW/KERNEL/moc_mainControl.C [ 66%] Generating source/VIEW/KERNEL/moc_shortcutRegistry.C [ 68%] Generating source/VIEW/KERNEL/moc_serverWidget.C [ 68%] Generating source/VIEW/WIDGETS/moc_colorButton.C [ 68%] Generating source/VIEW/WIDGETS/moc_colorTable.C [ 68%] Generating source/VIEW/WIDGETS/moc_datasetControl.C [ 68%] Generating source/VIEW/WIDGETS/moc_dockingController.C [ 68%] Generating source/VIEW/WIDGETS/moc_dockWidget.C [ 68%] Generating source/VIEW/WIDGETS/moc_fileObserver.C [ 68%] Generating source/VIEW/WIDGETS/moc_genericControl.C [ 68%] Generating source/VIEW/WIDGETS/moc_geometricControl.C [ 68%] Generating source/VIEW/WIDGETS/moc_gridColorWidget.C [ 68%] Generating source/VIEW/WIDGETS/moc_helpViewer.C [ 68%] Generating source/VIEW/WIDGETS/moc_logView.C [ 68%] Generating source/VIEW/WIDGETS/moc_molecularControl.C [ 68%] Generating source/VIEW/WIDGETS/moc_molecularStructure.C [ 68%] Generating source/VIEW/WIDGETS/moc_propertyEditor.C [ 68%] Generating source/VIEW/WIDGETS/moc_scene.C [ 68%] Generating source/VIEW/WIDGETS/moc_shortcutTableView.C [ 68%] Generating source/VIEW/WIDGETS/moc_SDWidget.C [ 70%] Generating source/VIEW/WIDGETS/moc_testFramework.C [ 70%] Generating source/VIEW/WIDGETS/moc_textEditorWidget.C [ 70%] Generating source/VIEW/WIDGETS/moc_HTMLView.C [ 70%] Generating source/VIEW/WIDGETS/moc_pyWidget.C [ 70%] Generating source/VIEW/WIDGETS/moc_hotkeyTable.C Scanning dependencies of target VIEW make[5]: Leaving directory '/<>/build' make[5]: Entering directory '/<>/build' [ 70%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/assignBondOrderConfigurationDialog.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/include/BALL/VIEW/KERNEL/preferencesEntry.h:11, from /<>/include/BALL/VIEW/DIALOGS/assignBondOrderConfigurationDialog.h:10, from /<>/source/VIEW/DIALOGS/assignBondOrderConfigurationDialog.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/assignBondOrderConfigurationDialog.h:14:0, from /<>/source/VIEW/DIALOGS/assignBondOrderConfigurationDialog.C:5: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/assignBondOrderConfigurationDialog.h:18:0, from /<>/source/VIEW/DIALOGS/assignBondOrderConfigurationDialog.C:5: /<>/include/BALL/VIEW/KERNEL/modularWidget.h:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/assignBondOrderConfigurationDialog.C:5:0: /<>/include/BALL/VIEW/DIALOGS/assignBondOrderConfigurationDialog.h:86:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ /<>/source/VIEW/DIALOGS/assignBondOrderConfigurationDialog.C:164:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat) ^~~~~ [ 70%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/assignBondOrderResultsDialog.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/embeddable.h:9, from /<>/include/BALL/VIEW/KERNEL/modularWidget.h:9, from /<>/include/BALL/VIEW/DIALOGS/assignBondOrderResultsDialog.h:9, from /<>/source/VIEW/DIALOGS/assignBondOrderResultsDialog.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/assignBondOrderResultsDialog.h:9:0, from /<>/source/VIEW/DIALOGS/assignBondOrderResultsDialog.C:5: /<>/include/BALL/VIEW/KERNEL/modularWidget.h:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/assignBondOrderResultsDialog.h:17:0, from /<>/source/VIEW/DIALOGS/assignBondOrderResultsDialog.C:5: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ In file included from /<>/include/BALL/VIEW/KERNEL/message.h:9:0, from /<>/source/VIEW/DIALOGS/assignBondOrderResultsDialog.C:8: /<>/include/BALL/VIEW/KERNEL/stage.h:261:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/VIEW/KERNEL/stage.h:267:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ [ 70%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/atomOverview.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/VIEW/DIALOGS/atomOverview.h:13, from /<>/source/VIEW/DIALOGS/atomOverview.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/KERNEL/message.h:9:0, from /<>/source/VIEW/DIALOGS/atomOverview.C:9: /<>/include/BALL/VIEW/KERNEL/stage.h:261:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/VIEW/KERNEL/stage.h:267:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ [ 70%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/amberConfigurationDialog.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/include/BALL/VIEW/KERNEL/preferencesEntry.h:11, from /<>/include/BALL/VIEW/DIALOGS/amberConfigurationDialog.h:13, from /<>/source/VIEW/DIALOGS/amberConfigurationDialog.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/amberConfigurationDialog.C:5:0: /<>/include/BALL/VIEW/DIALOGS/amberConfigurationDialog.h:78:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amber.h:14:0, from /<>/source/VIEW/DIALOGS/amberConfigurationDialog.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/amberConfigurationDialog.C:7:0: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /<>/source/VIEW/DIALOGS/amberConfigurationDialog.C:8: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14:0, from /<>/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /<>/source/VIEW/DIALOGS/amberConfigurationDialog.C:8: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/amberConfigurationDialog.C:8:0: /<>/include/BALL/MOLMEC/AMBER/amberBend.h:57:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/amberConfigurationDialog.C:9:0: /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:55:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual bool setup() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/amberConfigurationDialog.C:10:0: /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:111:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27:0, from /<>/source/VIEW/DIALOGS/amberConfigurationDialog.C:11: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/amberConfigurationDialog.C:11:0: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/VIEW/DIALOGS/amberConfigurationDialog.C:89:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat) ^~~~~ [ 70%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/bondProperties.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/VIEW/DIALOGS/bondProperties.h:12, from /<>/source/VIEW/DIALOGS/bondProperties.C:4: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/dockWidget.h:5:0, from /<>/include/BALL/VIEW/WIDGETS/genericControl.h:10, from /<>/include/BALL/VIEW/WIDGETS/molecularControl.h:9, from /<>/source/VIEW/DIALOGS/bondProperties.C:5: /<>/include/BALL/VIEW/KERNEL/modularWidget.h:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ [ 70%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/charmmConfigurationDialog.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/include/BALL/VIEW/KERNEL/preferencesEntry.h:11, from /<>/include/BALL/VIEW/DIALOGS/charmmConfigurationDialog.h:13, from /<>/source/VIEW/DIALOGS/charmmConfigurationDialog.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/charmmConfigurationDialog.C:5:0: /<>/include/BALL/VIEW/DIALOGS/charmmConfigurationDialog.h:81:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmm.h:15:0, from /<>/source/VIEW/DIALOGS/charmmConfigurationDialog.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/charmmConfigurationDialog.C:7:0: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19:0, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /<>/source/VIEW/DIALOGS/charmmConfigurationDialog.C:8: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14:0, from /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /<>/source/VIEW/DIALOGS/charmmConfigurationDialog.C:8: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/charmmConfigurationDialog.C:8:0: /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:56:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/charmmConfigurationDialog.C:9:0: /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:55:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual bool setup() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/charmmConfigurationDialog.C:10:0: /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:116:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/charmmConfigurationDialog.C:11:0: /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:83:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:33:0, from /<>/source/VIEW/DIALOGS/charmmConfigurationDialog.C:12: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/charmmConfigurationDialog.C:12:0: /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:113:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:160:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/VIEW/DIALOGS/charmmConfigurationDialog.C:220:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat) ^~~~~ [ 70%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/contourSurfaceDialog.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/VIEW/DATATYPE/colorUnit.h:9, from /<>/include/BALL/VIEW/DATATYPE/colorRGBA.h:9, from /<>/include/BALL/VIEW/DIALOGS/contourSurfaceDialog.h:12, from /<>/source/VIEW/DIALOGS/contourSurfaceDialog.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/dockWidget.h:5:0, from /<>/include/BALL/VIEW/WIDGETS/genericControl.h:10, from /<>/include/BALL/VIEW/WIDGETS/datasetControl.h:15, from /<>/source/VIEW/DIALOGS/contourSurfaceDialog.C:6: /<>/include/BALL/VIEW/KERNEL/modularWidget.h:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ In file included from /<>/include/BALL/VIEW/DATATYPE/standardDatasets.h:29:0, from /<>/source/VIEW/DIALOGS/contourSurfaceDialog.C:7: /<>/include/BALL/VIEW/DIALOGS/raytraceableContourSurfaceDialog.h:98:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ [ 70%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/coloringSettingsDialog.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/include/BALL/VIEW/KERNEL/preferencesEntry.h:11, from /<>/include/BALL/VIEW/DIALOGS/coloringSettingsDialog.h:13, from /<>/source/VIEW/DIALOGS/coloringSettingsDialog.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/coloringSettingsDialog.C:5:0: /<>/include/BALL/VIEW/DIALOGS/coloringSettingsDialog.h:61:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidOption); ^~~~~ /<>/source/VIEW/DIALOGS/coloringSettingsDialog.C:347:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidOption) ^~~~~ [ 70%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/compositeProperties.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/VIEW/DIALOGS/compositeProperties.h:15, from /<>/source/VIEW/DIALOGS/compositeProperties.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 70%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/clippingDialog.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/hashSet.h:9, from /<>/include/BALL/VIEW/KERNEL/clippingPlane.h:11, from /<>/include/BALL/VIEW/DIALOGS/clippingDialog.h:13, from /<>/source/VIEW/DIALOGS/clippingDialog.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/KERNEL/message.h:9:0, from /<>/source/VIEW/DIALOGS/clippingDialog.C:8: /<>/include/BALL/VIEW/KERNEL/stage.h:261:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/VIEW/KERNEL/stage.h:267:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ [ 70%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/dockDialog.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/include/BALL/VIEW/KERNEL/preferencesEntry.h:11, from /<>/include/BALL/VIEW/DIALOGS/dockDialog.h:14, from /<>/source/VIEW/DIALOGS/dockDialog.C:16: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/dockDialog.h:26:0, from /<>/source/VIEW/DIALOGS/dockDialog.C:16: /<>/include/BALL/STRUCTURE/defaultProcessors.h:74:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:109:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:157:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:9:0, from /<>/source/VIEW/DIALOGS/dockDialog.C:18: /<>/include/BALL/VIEW/KERNEL/modularWidget.h:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:17:0, from /<>/source/VIEW/DIALOGS/dockDialog.C:18: /<>/include/BALL/VIEW/DIALOGS/amberConfigurationDialog.h:78:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:29:0, from /<>/source/VIEW/DIALOGS/dockDialog.C:18: /<>/include/BALL/VIEW/DIALOGS/charmmConfigurationDialog.h:81:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:33:0, from /<>/source/VIEW/DIALOGS/dockDialog.C:18: /<>/include/BALL/VIEW/DIALOGS/MMFF94ConfigurationDialog.h:73:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/assignBondOrderConfigurationDialog.h:14:0, from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:37, from /<>/source/VIEW/DIALOGS/dockDialog.C:18: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:37:0, from /<>/source/VIEW/DIALOGS/dockDialog.C:18: /<>/include/BALL/VIEW/DIALOGS/assignBondOrderConfigurationDialog.h:86:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ In file included from /<>/include/BALL/XRAY/crystalGenerator.h:28:0, from /<>/include/BALL/VIEW/DIALOGS/generateCrystalDialog.h:22, from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:45, from /<>/source/VIEW/DIALOGS/dockDialog.C:18: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:45:0, from /<>/source/VIEW/DIALOGS/dockDialog.C:18: /<>/include/BALL/VIEW/DIALOGS/generateCrystalDialog.h:68:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool initSpaceGroupList() throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amber.h:14:0, from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:49, from /<>/source/VIEW/DIALOGS/dockDialog.C:18: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:49:0, from /<>/source/VIEW/DIALOGS/dockDialog.C:18: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:53:0, from /<>/source/VIEW/DIALOGS/dockDialog.C:18: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25:0, from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:57, from /<>/source/VIEW/DIALOGS/dockDialog.C:18: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:57:0, from /<>/source/VIEW/DIALOGS/dockDialog.C:18: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/VIEW/KERNEL/message.h:9:0, from /<>/source/VIEW/DIALOGS/dockDialog.C:21: /<>/include/BALL/VIEW/KERNEL/stage.h:261:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/VIEW/KERNEL/stage.h:267:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:18, from /<>/include/BALL/DOCKING/geometricFit.h:25, from /<>/source/VIEW/DIALOGS/dockDialog.C:27: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/source/VIEW/DIALOGS/dockDialog.C: In member function ‘void BALL::VIEW::DockDialog::algorithmChosen()’: /<>/source/VIEW/DIALOGS/dockDialog.C:866:11: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] bool found = false; ^~~~~ [ 72%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/dockProgressDialog.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/VIEW/DIALOGS/dockProgressDialog.h:14, from /<>/source/VIEW/DIALOGS/dockProgressDialog.C:4: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:18, from /<>/include/BALL/VIEW/DIALOGS/dockProgressDialog.h:18, from /<>/source/VIEW/DIALOGS/dockProgressDialog.C:4: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ [ 72%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/dockResultDialog.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/embeddable.h:9, from /<>/include/BALL/VIEW/KERNEL/modularWidget.h:9, from /<>/include/BALL/VIEW/WIDGETS/dockingController.h:11, from /<>/include/BALL/VIEW/DIALOGS/dockResultDialog.h:14, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/dockingController.h:11:0, from /<>/include/BALL/VIEW/DIALOGS/dockResultDialog.h:14, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:5: /<>/include/BALL/VIEW/KERNEL/modularWidget.h:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/dockDialog.h:26:0, from /<>/include/BALL/VIEW/WIDGETS/dockingController.h:15, from /<>/include/BALL/VIEW/DIALOGS/dockResultDialog.h:14, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:5: /<>/include/BALL/STRUCTURE/defaultProcessors.h:74:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:109:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:157:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/dockResultDialog.C:6:0: /<>/include/BALL/VIEW/DIALOGS/amberConfigurationDialog.h:78:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:29:0, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:8: /<>/include/BALL/VIEW/DIALOGS/charmmConfigurationDialog.h:81:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:33:0, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:8: /<>/include/BALL/VIEW/DIALOGS/MMFF94ConfigurationDialog.h:73:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/assignBondOrderConfigurationDialog.h:14:0, from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:37, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:8: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:37:0, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:8: /<>/include/BALL/VIEW/DIALOGS/assignBondOrderConfigurationDialog.h:86:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ In file included from /<>/include/BALL/XRAY/crystalGenerator.h:28:0, from /<>/include/BALL/VIEW/DIALOGS/generateCrystalDialog.h:22, from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:45, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:8: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:45:0, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:8: /<>/include/BALL/VIEW/DIALOGS/generateCrystalDialog.h:68:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool initSpaceGroupList() throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amber.h:14:0, from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:49, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:49:0, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:8: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:53:0, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:8: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25:0, from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:57, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:8: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/molecularStructure.h:57:0, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:8: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17:0, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:12: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13:0, from /<>/source/VIEW/DIALOGS/dockResultDialog.C:13: /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:65:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/dockResultDialog.C:15:0: /<>/include/BALL/DOCKING/COMMON/dockResult.h:104:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/DOCKING/COMMON/dockResult.h:115:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/DOCKING/COMMON/dockResult.h:120:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/DOCKING/COMMON/dockResult.h:125:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/DOCKING/COMMON/dockResult.h:130:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/DOCKING/COMMON/dockResult.h:148:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ [ 72%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/downloadPDBFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/embeddable.h:9, from /<>/include/BALL/VIEW/KERNEL/modularWidget.h:9, from /<>/include/BALL/VIEW/DIALOGS/downloadPDBFile.h:13, from /<>/source/VIEW/DIALOGS/downloadPDBFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/downloadPDBFile.h:13:0, from /<>/source/VIEW/DIALOGS/downloadPDBFile.C:5: /<>/include/BALL/VIEW/KERNEL/modularWidget.h:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ In file included from /<>/include/BALL/VIEW/KERNEL/message.h:9:0, from /<>/source/VIEW/DIALOGS/downloadPDBFile.C:11: /<>/include/BALL/VIEW/KERNEL/stage.h:261:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/VIEW/KERNEL/stage.h:267:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ [ 72%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/downloadElectronDensity.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/embeddable.h:9, from /<>/include/BALL/VIEW/KERNEL/modularWidget.h:9, from /<>/include/BALL/VIEW/DIALOGS/downloadElectronDensity.h:10, from /<>/source/VIEW/DIALOGS/downloadElectronDensity.C:4: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/downloadElectronDensity.h:10:0, from /<>/source/VIEW/DIALOGS/downloadElectronDensity.C:4: /<>/include/BALL/VIEW/KERNEL/modularWidget.h:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ In file included from /<>/include/BALL/VIEW/DATATYPE/standardDatasets.h:29:0, from /<>/source/VIEW/DIALOGS/downloadElectronDensity.C:11: /<>/include/BALL/VIEW/DIALOGS/raytraceableContourSurfaceDialog.h:98:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ In file included from /<>/include/BALL/VIEW/KERNEL/message.h:9:0, from /<>/source/VIEW/DIALOGS/downloadElectronDensity.C:14: /<>/include/BALL/VIEW/KERNEL/stage.h:261:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/VIEW/KERNEL/stage.h:267:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/downloadElectronDensity.C:15:0: /<>/include/BALL/VIEW/KERNEL/threads.h:257:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ /<>/include/BALL/VIEW/KERNEL/threads.h:295:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ [ 72%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/editSettings.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/include/BALL/VIEW/KERNEL/preferencesEntry.h:11, from /<>/include/BALL/VIEW/DIALOGS/editSettings.h:13, from /<>/source/VIEW/DIALOGS/editSettings.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 72%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/editSingleShortcut.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/include/BALL/VIEW/KERNEL/preferencesEntry.h:11, from /<>/include/BALL/VIEW/DIALOGS/editSingleShortcut.h:10, from /<>/source/VIEW/DIALOGS/editSingleShortcut.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/editSingleShortcut.h:18:0, from /<>/source/VIEW/DIALOGS/editSingleShortcut.C:5: /<>/include/BALL/VIEW/KERNEL/modularWidget.h:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ /<>/source/VIEW/DIALOGS/editSingleShortcut.C: In member function ‘virtual void BALL::VIEW::EditSingleShortcut::keyReleaseEvent(QKeyEvent*)’: /<>/source/VIEW/DIALOGS/editSingleShortcut.C:157:9: warning: variable ‘released_key’ set but not used [-Wunused-but-set-variable] bool released_key = false; ^~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/displayProperties.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/embeddable.h:9, from /<>/include/BALL/VIEW/KERNEL/modularWidget.h:9, from /<>/include/BALL/VIEW/DIALOGS/displayProperties.h:15, from /<>/source/VIEW/DIALOGS/displayProperties.C:10: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/displayProperties.h:15:0, from /<>/source/VIEW/DIALOGS/displayProperties.C:10: /<>/include/BALL/VIEW/KERNEL/modularWidget.h:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/displayProperties.C:11:0: /<>/include/BALL/VIEW/DIALOGS/modelSettingsDialog.h:63:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidOption); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/displayProperties.C:12:0: /<>/include/BALL/VIEW/DIALOGS/coloringSettingsDialog.h:61:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidOption); ^~~~~ In file included from /<>/include/BALL/VIEW/KERNEL/message.h:9:0, from /<>/source/VIEW/DIALOGS/displayProperties.C:15: /<>/include/BALL/VIEW/KERNEL/stage.h:261:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/VIEW/KERNEL/stage.h:267:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/displayProperties.C:23:0: /<>/include/BALL/VIEW/MODELS/ballAndStickModel.h:100:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfRange); ^~~~~ /<>/include/BALL/VIEW/MODELS/ballAndStickModel.h:111:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfRange); ^~~~~ /<>/include/BALL/VIEW/MODELS/ballAndStickModel.h:200:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSEdge.h:9:0, from /<>/include/BALL/STRUCTURE/reducedSurface.h:41, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12, from /<>/include/BALL/VIEW/MODELS/surfaceModel.h:15, from /<>/source/VIEW/DIALOGS/displayProperties.C:25: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:41:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12, from /<>/include/BALL/VIEW/MODELS/surfaceModel.h:15, from /<>/source/VIEW/DIALOGS/displayProperties.C:25: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSFace.h:9:0, from /<>/include/BALL/STRUCTURE/reducedSurface.h:45, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12, from /<>/include/BALL/VIEW/MODELS/surfaceModel.h:15, from /<>/source/VIEW/DIALOGS/displayProperties.C:25: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:45:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12, from /<>/include/BALL/VIEW/MODELS/surfaceModel.h:15, from /<>/source/VIEW/DIALOGS/displayProperties.C:25: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12:0, from /<>/include/BALL/VIEW/MODELS/surfaceModel.h:15, from /<>/source/VIEW/DIALOGS/displayProperties.C:25: /<>/include/BALL/STRUCTURE/reducedSurface.h:306:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:313:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:320:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:327:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:375:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:542:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:562:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:570:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:578:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:592:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:612:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:633:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:645:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:657:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:17:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:15, from /<>/include/BALL/VIEW/MODELS/surfaceModel.h:15, from /<>/source/VIEW/DIALOGS/displayProperties.C:25: /<>/include/BALL/STRUCTURE/SESVertex.h:145:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:15:0, from /<>/include/BALL/VIEW/MODELS/surfaceModel.h:15, from /<>/source/VIEW/DIALOGS/displayProperties.C:25: /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:154:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:352:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:502:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSES.h:13:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:18, from /<>/include/BALL/VIEW/MODELS/surfaceModel.h:15, from /<>/source/VIEW/DIALOGS/displayProperties.C:25: /<>/include/BALL/STRUCTURE/triangle.h:137:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/triangle.h:146:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSES.h:21:0, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:18, from /<>/include/BALL/VIEW/MODELS/surfaceModel.h:15, from /<>/source/VIEW/DIALOGS/displayProperties.C:25: /<>/include/BALL/STRUCTURE/trianglePoint.h:148:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:18:0, from /<>/include/BALL/VIEW/MODELS/surfaceModel.h:15, from /<>/source/VIEW/DIALOGS/displayProperties.C:25: /<>/include/BALL/STRUCTURE/triangulatedSES.h:135:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException,Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/triangulatedSES.h:196:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException,Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:21:0, from /<>/include/BALL/VIEW/MODELS/surfaceModel.h:15, from /<>/source/VIEW/DIALOGS/displayProperties.C:25: /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:86:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:91:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:100:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:105:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:114:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:119:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/VIEW/MODELS/surfaceModel.h:15:0, from /<>/source/VIEW/DIALOGS/displayProperties.C:25: /<>/include/BALL/STRUCTURE/surfaceProcessor.h:101:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setProbeRadius(double radius) throw(Exception::OutOfRange){ ^~~~~ In file included from /<>/include/BALL/VIEW/MODELS/colorProcessor.h:19:0, from /<>/include/BALL/VIEW/KERNEL/representation.h:34, from /<>/include/BALL/VIEW/KERNEL/stage.h:29, from /<>/include/BALL/VIEW/KERNEL/message.h:9, from /<>/source/VIEW/DIALOGS/displayProperties.C:15: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:29: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = int; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/source/VIEW/DIALOGS/displayProperties.C:977:3: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/fieldLinesDialog.o In file included from /<>/include/BALL/MATHS/vector3.h:9:0, from /<>/include/BALL/VIEW/MODELS/fieldLineCreator.h:11, from /<>/include/BALL/VIEW/DIALOGS/fieldLinesDialog.h:13, from /<>/source/VIEW/DIALOGS/fieldLinesDialog.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 72%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/FDPBDialog.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/embeddable.h:9, from /<>/include/BALL/VIEW/KERNEL/modularWidget.h:9, from /<>/include/BALL/VIEW/DIALOGS/FDPBDialog.h:12, from /<>/source/VIEW/DIALOGS/FDPBDialog.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/FDPBDialog.h:12:0, from /<>/source/VIEW/DIALOGS/FDPBDialog.C:5: /<>/include/BALL/VIEW/KERNEL/modularWidget.h:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/FDPBDialog.h:32:0, from /<>/source/VIEW/DIALOGS/FDPBDialog.C:5: /<>/include/BALL/STRUCTURE/defaultProcessors.h:74:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:109:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:157:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/VIEW/KERNEL/message.h:9:0, from /<>/source/VIEW/DIALOGS/FDPBDialog.C:6: /<>/include/BALL/VIEW/KERNEL/stage.h:261:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/VIEW/KERNEL/stage.h:267:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/FDPBDialog.C:10:0: /<>/include/BALL/VIEW/KERNEL/threads.h:257:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ /<>/include/BALL/VIEW/KERNEL/threads.h:295:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ In file included from /<>/include/BALL/VIEW/DATATYPE/standardDatasets.h:29:0, from /<>/source/VIEW/DIALOGS/FDPBDialog.C:11: /<>/include/BALL/VIEW/DIALOGS/raytraceableContourSurfaceDialog.h:98:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ [ 72%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/generateCrystalDialog.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/embeddable.h:9, from /<>/include/BALL/VIEW/KERNEL/modularWidget.h:9, from /<>/include/BALL/VIEW/DIALOGS/generateCrystalDialog.h:10, from /<>/source/VIEW/DIALOGS/generateCrystalDialog.C:4: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/generateCrystalDialog.h:10:0, from /<>/source/VIEW/DIALOGS/generateCrystalDialog.C:4: /<>/include/BALL/VIEW/KERNEL/modularWidget.h:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ In file included from /<>/include/BALL/XRAY/crystalGenerator.h:28:0, from /<>/include/BALL/VIEW/DIALOGS/generateCrystalDialog.h:22, from /<>/source/VIEW/DIALOGS/generateCrystalDialog.C:4: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/generateCrystalDialog.C:4:0: /<>/include/BALL/VIEW/DIALOGS/generateCrystalDialog.h:68:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool initSpaceGroupList() throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/VIEW/DIALOGS/generateCrystalDialog.C:9:0: /<>/include/BALL/VIEW/KERNEL/threads.h:257:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ /<>/include/BALL/VIEW/KERNEL/threads.h:295:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ /<>/source/VIEW/DIALOGS/generateCrystalDialog.C:55:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/VIEW/DIALOGS/generateCrystalDialog.C: In member function ‘bool BALL::VIEW::GenerateCrystalDialog::initSpaceGroupList()’: /<>/source/VIEW/DIALOGS/generateCrystalDialog.C:81:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (space_group_combobox->count() != sg_list_.getNumberOfKeys()) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/gridVisualizationDialog.o In file included from /<>/build/include/BALL/COMMON/version.h:9:0, from /<>/include/BALL/common.h:24, from /<>/include/BALL/VIEW/DATATYPE/colorUnit.h:9, from /<>/include/BALL/VIEW/DATATYPE/colorRGBA.h:9, from /<>/include/BALL/VIEW/DIALOGS/gridVisualizationDialog.h:13, from /<>/source/VIEW/DIALOGS/gridVisualizationDialog.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/VIEW/DIALOGS/raytraceableContourSurfaceDialog.h:17:0, from /<>/include/BALL/VIEW/DATATYPE/standardDatasets.h:29, from /<>/include/BALL/VIEW/DIALOGS/gridVisualizationDialog.h:21, from /<>/source/VIEW/DIALOGS/gridVisualizationDialog.C:5: /<>/include/BALL/VIEW/KERNEL/modularWidget.h:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ In file included from /<>/include/BALL/VIEW/DATATYPE/standardDatasets.h:29:0, from /<>/include/BALL/VIEW/DIALOGS/gridVisualizationDialog.h:21, from /<>/source/VIEW/DIALOGS/gridVisualizationDialog.C:5: /<>/include/BALL/VIEW/DIALOGS/raytraceableContourSurfaceDialog.h:98:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::InvalidFormat); ^~~~~ In file included from /<>/include/BALL/VIEW/KERNEL/message.h:9:0, from /<>/source/VIEW/DIALOGS/gridVisualizationDialog.C:8: /<>/include/BALL/VIEW/KERNEL/stage.h:261:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/VIEW/KERNEL/stage.h:267:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/VIEW/RENDERING/glDisplayList.h:13:0, from /<>/include/BALL/VIEW/RENDERING/RENDERERS/glRenderer.h:33, from /<>/include/BALL/VIEW/WIDGETS/scene.h:13, from /<>/source/VIEW/DIALOGS/gridVisualizationDialog.C:12: /usr/include/qt4/QtOpenGL/qgl.h:85:17: error: conflicting declaration ‘typedef GLfloat GLdouble’ typedef GLfloat GLdouble; ^~~~~~~~ In file included from /<>/include/BALL/VIEW/RENDERING/RENDERERS/glRenderer.h:29:0, from /<>/include/BALL/VIEW/WIDGETS/scene.h:13, from /<>/source/VIEW/DIALOGS/gridVisualizationDialog.C:12: /usr/include/GL/glew.h:291:16: note: previous declaration as ‘typedef double GLdouble’ typedef double GLdouble; ^~~~~~~~ In file included from /<>/include/BALL/VIEW/RENDERING/RENDERERS/glRenderer.h:33:0, from /<>/include/BALL/VIEW/WIDGETS/scene.h:13, from /<>/source/VIEW/DIALOGS/gridVisualizationDialog.C:12: /<>/include/BALL/VIEW/RENDERING/glDisplayList.h:145:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(NestedDisplayList, NoDisplayListAvailable, DisplayListRedeclaration); ^~~~~ In file included from /<>/include/BALL/VIEW/RENDERING/renderWindow.h:9:0, from /<>/include/BALL/VIEW/WIDGETS/scene.h:21, from /<>/source/VIEW/DIALOGS/gridVisualizationDialog.C:12: /<>/include/BALL/VIEW/RENDERING/renderTarget.h:239:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual FrameBufferPtr getBuffer() throw(BALL::Exception::NoBufferAvailable) = 0; ^~~~~ In file included from /<>/include/BALL/VIEW/WIDGETS/scene.h:21:0, from /<>/source/VIEW/DIALOGS/gridVisualizationDialog.C:12: /<>/include/BALL/VIEW/RENDERING/renderWindow.h:80:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual FrameBufferPtr getBuffer() throw(BALL::Exception::NoBufferAvailable); ^~~~~ CMakeFiles/VIEW.dir/build.make:1202: recipe for target 'CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/gridVisualizationDialog.o' failed make[5]: *** [CMakeFiles/VIEW.dir/source/VIEW/DIALOGS/gridVisualizationDialog.o] Error 1 make[5]: Leaving directory '/<>/build' CMakeFiles/Makefile2:1069: recipe for target 'CMakeFiles/VIEW.dir/all' failed make[4]: *** [CMakeFiles/VIEW.dir/all] Error 2 make[4]: Leaving directory '/<>/build' CMakeFiles/Makefile2:1081: recipe for target 'CMakeFiles/VIEW.dir/rule' failed make[3]: *** [CMakeFiles/VIEW.dir/rule] Error 2 make[3]: Leaving directory '/<>/build' Makefile:552: recipe for target 'VIEW' failed make[2]: *** [VIEW] Error 2 make[2]: Leaving directory '/<>/build' debian/rules:57: recipe for target 'override_dh_auto_build-arch' failed make[1]: *** [override_dh_auto_build-arch] Error 2 make[1]: Leaving directory '/<>' debian/rules:22: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20180421-1326 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 923500 Build-Time: 4715 Distribution: bionic-proposed Fail-Stage: build Host Architecture: armhf Install-Time: 80 Job: ball_1.4.3~beta1-4.dsc Machine Architecture: arm64 Package: ball Package-Time: 4803 Source-Version: 1.4.3~beta1-4 Space: 923500 Status: attempted Version: 1.4.3~beta1-4 -------------------------------------------------------------------------------- Finished at 20180421-1326 Build needed 01:20:03, 923500k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13653354 Scanning for processes to kill in build PACKAGEBUILD-13653354 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13653354 Stopping target for build PACKAGEBUILD-13653354 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13653354 Removing build PACKAGEBUILD-13653354